0s autopkgtest [15:50:13]: starting date and time: 2024-03-23 15:50:13+0000 0s autopkgtest [15:50:13]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:50:13]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.18yksqs4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade wtdbg2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-3.secgroup --name adt-noble-ppc64el-wtdbg2-20240323-155013-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 181s autopkgtest [15:53:14]: testbed dpkg architecture: ppc64el 181s autopkgtest [15:53:14]: testbed apt version: 2.7.12 181s autopkgtest [15:53:14]: @@@@@@@@@@@@@@@@@@@@ test bed setup 182s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 182s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 183s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 184s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 184s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 184s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 184s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 184s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 184s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 184s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 185s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 185s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 185s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 188s Fetched 9623 kB in 4s (2492 kB/s) 188s Reading package lists... 191s Reading package lists... 191s Building dependency tree... 191s Reading state information... 192s Calculating upgrade... 192s The following packages will be REMOVED: 192s libssl3 192s The following NEW packages will be installed: 192s libssl3t64 192s The following packages have been kept back: 192s curl 192s The following packages will be upgraded: 192s openssl 192s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 192s Need to get 3151 kB of archives. 192s After this operation, 73.7 kB of additional disk space will be used. 192s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 192s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 193s Fetched 3151 kB in 1s (2978 kB/s) 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 193s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 193s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 193s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 193s wget depends on libssl3 (>= 3.0.0). 193s tnftp depends on libssl3 (>= 3.0.0). 193s tcpdump depends on libssl3 (>= 3.0.0). 193s systemd-resolved depends on libssl3 (>= 3.0.0). 193s systemd depends on libssl3 (>= 3.0.0). 193s sudo depends on libssl3 (>= 3.0.0). 193s rsync depends on libssl3 (>= 3.0.0). 193s python3-cryptography depends on libssl3 (>= 3.0.0). 193s openssh-server depends on libssl3 (>= 3.0.10). 193s openssh-client depends on libssl3 (>= 3.0.10). 193s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 193s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 193s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 193s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 193s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 193s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 193s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 193s libnvme1 depends on libssl3 (>= 3.0.0). 193s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 193s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 193s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 193s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 193s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 193s kmod depends on libssl3 (>= 3.0.0). 193s dhcpcd-base depends on libssl3 (>= 3.0.0). 193s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 193s 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 193s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 193s Selecting previously unselected package libssl3t64:ppc64el. 193s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 193s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 193s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 193s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 193s Setting up openssl (3.0.13-0ubuntu2) ... 193s Processing triggers for man-db (2.12.0-3) ... 194s Processing triggers for libc-bin (2.39-0ubuntu6) ... 194s Reading package lists... 195s Building dependency tree... 195s Reading state information... 195s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 195s sh: Attempting to set up Debian/Ubuntu apt sources automatically 195s sh: Distribution appears to be Ubuntu 196s Reading package lists... 196s Building dependency tree... 196s Reading state information... 197s eatmydata is already the newest version (131-1). 197s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s Reading package lists... 197s Building dependency tree... 197s Reading state information... 197s dbus is already the newest version (1.14.10-4ubuntu1). 197s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s Reading package lists... 197s Building dependency tree... 197s Reading state information... 197s rng-tools-debian is already the newest version (2.4). 197s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s The following packages will be REMOVED: 198s cloud-init* python3-configobj* python3-debconf* 198s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 198s After this operation, 3256 kB disk space will be freed. 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 198s Removing cloud-init (24.1.2-0ubuntu1) ... 199s Removing python3-configobj (5.0.8-3) ... 199s Removing python3-debconf (1.5.86) ... 199s Processing triggers for man-db (2.12.0-3) ... 199s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 199s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 200s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 200s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 200s invoke-rc.d: policy-rc.d denied execution of try-restart. 200s Reading package lists... 200s Building dependency tree... 200s Reading state information... 200s linux-generic is already the newest version (6.8.0-11.11+1). 200s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 201s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 201s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 201s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 203s Reading package lists... 203s Reading package lists... 204s Building dependency tree... 204s Reading state information... 204s Calculating upgrade... 204s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 204s Reading package lists... 204s Building dependency tree... 204s Reading state information... 204s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s autopkgtest [15:53:38]: rebooting testbed after setup commands that affected boot 242s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 249s autopkgtest [15:54:22]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 252s autopkgtest [15:54:25]: @@@@@@@@@@@@@@@@@@@@ apt-source wtdbg2 259s Get:1 http://ftpmaster.internal/ubuntu noble/universe wtdbg2 2.5-9 (dsc) [2079 B] 259s Get:2 http://ftpmaster.internal/ubuntu noble/universe wtdbg2 2.5-9 (tar) [237 kB] 259s Get:3 http://ftpmaster.internal/ubuntu noble/universe wtdbg2 2.5-9 (diff) [121 MB] 259s gpgv: Signature made Thu Dec 1 16:43:57 2022 UTC 259s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 259s gpgv: issuer "tille@debian.org" 259s gpgv: Can't check signature: No public key 259s dpkg-source: warning: cannot verify inline signature for ./wtdbg2_2.5-9.dsc: no acceptable signature found 261s autopkgtest [15:54:34]: testing package wtdbg2 version 2.5-9 386s autopkgtest [15:56:39]: build not needed 538s autopkgtest [15:59:11]: test run-unit-test: preparing testbed 549s Reading package lists... 549s Building dependency tree... 549s Reading state information... 549s Starting pkgProblemResolver with broken count: 0 549s Starting 2 pkgProblemResolver with broken count: 0 549s Done 550s The following additional packages will be installed: 550s bwa libdeflate0 libhts3 libhtscodecs2 minimap2 samtools wtdbg2-examples 550s Suggested packages: 550s cwltool 550s The following NEW packages will be installed: 550s autopkgtest-satdep bwa libdeflate0 libhts3 libhtscodecs2 minimap2 samtools 550s wtdbg2-examples 550s 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. 550s Need to get 123 MB/123 MB of archives. 550s After this operation, 126 MB of additional disk space will be used. 550s Get:1 /tmp/autopkgtest.IxgdQl/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [732 B] 550s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el bwa ppc64el 0.7.17-7 [214 kB] 550s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 550s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 550s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 550s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el minimap2 ppc64el 2.24+dfsg-3build2 [396 kB] 550s Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools ppc64el 1.19.2-1 [669 kB] 550s Get:8 http://ftpmaster.internal/ubuntu noble/universe ppc64el wtdbg2-examples all 2.5-9 [121 MB] 554s Fetched 123 MB in 4s (28.9 MB/s) 554s Selecting previously unselected package bwa. 554s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 554s Preparing to unpack .../0-bwa_0.7.17-7_ppc64el.deb ... 554s Unpacking bwa (0.7.17-7) ... 554s Selecting previously unselected package libdeflate0:ppc64el. 554s Preparing to unpack .../1-libdeflate0_1.19-1_ppc64el.deb ... 554s Unpacking libdeflate0:ppc64el (1.19-1) ... 554s Selecting previously unselected package libhtscodecs2:ppc64el. 554s Preparing to unpack .../2-libhtscodecs2_1.6.0-1_ppc64el.deb ... 554s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 554s Selecting previously unselected package libhts3:ppc64el. 554s Preparing to unpack .../3-libhts3_1.18+ds-1_ppc64el.deb ... 554s Unpacking libhts3:ppc64el (1.18+ds-1) ... 555s Selecting previously unselected package minimap2. 555s Preparing to unpack .../4-minimap2_2.24+dfsg-3build2_ppc64el.deb ... 555s Unpacking minimap2 (2.24+dfsg-3build2) ... 555s Selecting previously unselected package samtools. 555s Preparing to unpack .../5-samtools_1.19.2-1_ppc64el.deb ... 555s Unpacking samtools (1.19.2-1) ... 555s Selecting previously unselected package wtdbg2-examples. 555s Preparing to unpack .../6-wtdbg2-examples_2.5-9_all.deb ... 555s Unpacking wtdbg2-examples (2.5-9) ... 555s Selecting previously unselected package autopkgtest-satdep. 555s Preparing to unpack .../7-1-autopkgtest-satdep.deb ... 555s Unpacking autopkgtest-satdep (0) ... 555s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 555s Setting up bwa (0.7.17-7) ... 555s Setting up minimap2 (2.24+dfsg-3build2) ... 555s Setting up libdeflate0:ppc64el (1.19-1) ... 555s Setting up wtdbg2-examples (2.5-9) ... 555s Setting up libhts3:ppc64el (1.18+ds-1) ... 555s Setting up samtools (1.19.2-1) ... 555s Setting up autopkgtest-satdep (0) ... 555s Processing triggers for man-db (2.12.0-3) ... 556s Processing triggers for libc-bin (2.39-0ubuntu6) ... 558s (Reading database ... 69861 files and directories currently installed.) 558s Removing autopkgtest-satdep (0) ... 559s autopkgtest [15:59:32]: test run-unit-test: [----------------------- 562s selfSampleData/reference.fasta 562s selfSampleData/pacbio_filtered.fastq 562s selfSampleData/README 562s selfSampleData/pacbio.spec 562s Begin Execution 562s /tmp/autopkgtest.IxgdQl/build.qMN/src/debian/tests/run-unit-test: line 19: wtdbg2: command not found 562s autopkgtest [15:59:35]: test run-unit-test: -----------------------] 564s autopkgtest [15:59:37]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 564s run-unit-test FAIL non-zero exit status 127 564s autopkgtest [15:59:37]: @@@@@@@@@@@@@@@@@@@@ summary 564s run-unit-test FAIL non-zero exit status 127 606s Creating nova instance adt-noble-ppc64el-wtdbg2-20240323-155013-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...