0s autopkgtest [12:18:49]: starting date: 2024-03-13 0s autopkgtest [12:18:49]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [12:18:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bt_96m77/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:perl,src:db5.3,src:gdbm,src:mmdebstrap --apt-upgrade vcftools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=perl/5.38.2-3.2 db5.3/5.3.28+dfsg2-5 gdbm/1.23-5.1 mmdebstrap/1.4.3-6' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-5.secgroup --name adt-noble-ppc64el-vcftools-20240313-121849-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 149s autopkgtest [12:21:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 150s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 150s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 150s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [40.4 kB] 150s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2754 kB] 151s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [448 kB] 151s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [594 kB] 152s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 152s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 152s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 152s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3111 kB] 152s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 152s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [39.1 kB] 152s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 155s Fetched 7121 kB in 3s (2040 kB/s) 155s Reading package lists... 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s Calculating upgrade... 161s The following packages were automatically installed and are no longer required: 161s libgdbm-compat4t64 libperl5.38 lto-disabled-list make perl-modules-5.38 161s Use 'sudo apt autoremove' to remove them. 161s The following packages will be REMOVED: 161s dpkg-dev libdpkg-perl libgdbm-compat4 libgdbm6 perl 161s The following NEW packages will be installed: 161s libgdbm-compat4t64 libgdbm6t64 161s The following packages have been kept back: 161s libperl5.38 161s The following packages will be upgraded: 161s perl-base perl-modules-5.38 161s 2 upgraded, 2 newly installed, 5 to remove and 1 not upgraded. 161s Need to get 5075 kB of archives. 161s After this operation, 4158 kB disk space will be freed. 161s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-base ppc64el 5.38.2-3.2 [1916 kB] 162s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm6t64 ppc64el 1.23-5.1 [41.9 kB] 162s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm-compat4t64 ppc64el 1.23-5.1 [6972 B] 162s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 163s Fetched 5075 kB in 2s (3323 kB/s) 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70112 files and directories currently installed.) 163s Removing dpkg-dev (1.22.4ubuntu5) ... 163s Removing libdpkg-perl (1.22.4ubuntu5) ... 163s Removing perl (5.38.2-3) ... 163s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69531 files and directories currently installed.) 163s Preparing to unpack .../perl-base_5.38.2-3.2_ppc64el.deb ... 163s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 164s Setting up perl-base (5.38.2-3.2) ... 164s dpkg: libgdbm6:ppc64el: dependency problems, but removing anyway as you requested: 164s python3-gdbm:ppc64el depends on libgdbm6 (>= 1.16). 164s man-db depends on libgdbm6 (>= 1.16). 164s libperl5.38:ppc64el depends on libgdbm6 (>= 1.21). 164s libgdbm-compat4:ppc64el depends on libgdbm6 (>= 1.16). 164s 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69531 files and directories currently installed.) 164s Removing libgdbm6:ppc64el (1.23-5) ... 164s Selecting previously unselected package libgdbm6t64:ppc64el. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69526 files and directories currently installed.) 164s Preparing to unpack .../libgdbm6t64_1.23-5.1_ppc64el.deb ... 164s Unpacking libgdbm6t64:ppc64el (1.23-5.1) ... 164s dpkg: libgdbm-compat4:ppc64el: dependency problems, but removing anyway as you requested: 164s libperl5.38:ppc64el depends on libgdbm-compat4 (>= 1.18-3). 164s 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69532 files and directories currently installed.) 164s Removing libgdbm-compat4:ppc64el (1.23-5) ... 164s Selecting previously unselected package libgdbm-compat4t64:ppc64el. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69527 files and directories currently installed.) 164s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_ppc64el.deb ... 164s Unpacking libgdbm-compat4t64:ppc64el (1.23-5.1) ... 164s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... 164s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 164s Setting up libgdbm6t64:ppc64el (1.23-5.1) ... 164s Setting up libgdbm-compat4t64:ppc64el (1.23-5.1) ... 164s Setting up perl-modules-5.38 (5.38.2-3.2) ... 164s Processing triggers for man-db (2.12.0-3) ... 165s Processing triggers for libc-bin (2.39-0ubuntu2) ... 165s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 165s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 165s Reading package lists... 166s Building dependency tree... 166s Reading state information... 166s The following packages will be REMOVED: 166s libgdbm-compat4t64* libperl5.38* lto-disabled-list* make* perl-modules-5.38* 166s 0 upgraded, 0 newly installed, 5 to remove and 0 not upgraded. 166s After this operation, 53.0 MB disk space will be freed. 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69533 files and directories currently installed.) 166s Removing libperl5.38:ppc64el (5.38.2-3) ... 166s Removing libgdbm-compat4t64:ppc64el (1.23-5.1) ... 166s Removing lto-disabled-list (47) ... 166s Removing make (4.3-4.1build1) ... 166s Removing perl-modules-5.38 (5.38.2-3.2) ... 166s Processing triggers for man-db (2.12.0-3) ... 166s Processing triggers for libc-bin (2.39-0ubuntu2) ... 167s sh: Attempting to set up Debian/Ubuntu apt sources automatically 167s sh: Distribution appears to be Ubuntu 167s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s eatmydata is already the newest version (131-1). 168s dbus is already the newest version (1.14.10-4ubuntu1). 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s rng-tools-debian is already the newest version (2.4). 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Reading package lists... 169s Building dependency tree... 169s Reading state information... 169s haveged is already the newest version (1.9.14-1ubuntu1). 169s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 169s Reading package lists... 169s Building dependency tree... 169s Reading state information... 170s The following additional packages will be installed: 170s libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 lto-disabled-list 170s make perl perl-modules-5.38 170s Suggested packages: 170s debian-keyring gcc | c-compiler git bzr make-doc perl-doc 170s libterm-readline-gnu-perl | libterm-readline-perl-perl 170s libtap-harness-archive-perl 170s Recommended packages: 170s build-essential gcc | c-compiler fakeroot libalgorithm-merge-perl 170s libfile-fcntllock-perl 170s The following packages will be REMOVED: 170s libdb5.3 170s The following NEW packages will be installed: 170s dpkg-dev libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 170s lto-disabled-list make perl perl-modules-5.38 170s 0 upgraded, 9 newly installed, 1 to remove and 0 not upgraded. 170s Need to get 7626 kB/10.7 MB of archives. 170s After this operation, 57.2 MB of additional disk space will be used. 170s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-5build1 [868 kB] 170s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libperl5.38t64 ppc64el 5.38.2-3.2 [4957 kB] 171s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl ppc64el 5.38.2-3.2 [231 kB] 172s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libdpkg-perl all 1.22.4ubuntu5 [268 kB] 172s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el make ppc64el 4.3-4.1build1 [211 kB] 172s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el lto-disabled-list all 47 [12.4 kB] 172s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el dpkg-dev all 1.22.4ubuntu5 [1078 kB] 172s Fetched 7626 kB in 2s (3590 kB/s) 172s dpkg: libdb5.3:ppc64el: dependency problems, but removing anyway as you requested: 172s libsasl2-modules-db:ppc64el depends on libdb5.3. 172s libpython3.12-stdlib:ppc64el depends on libdb5.3. 172s libpython3.11-stdlib:ppc64el depends on libdb5.3. 172s libpam-modules:ppc64el depends on libdb5.3. 172s iproute2 depends on libdb5.3. 172s apt-utils depends on libdb5.3. 172s 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67568 files and directories currently installed.) 172s Removing libdb5.3:ppc64el (5.3.28+dfsg2-4) ... 172s Selecting previously unselected package libdb5.3t64:ppc64el. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67562 files and directories currently installed.) 172s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-5build1_ppc64el.deb ... 172s Unpacking libdb5.3t64:ppc64el (5.3.28+dfsg2-5build1) ... 172s Setting up libdb5.3t64:ppc64el (5.3.28+dfsg2-5build1) ... 172s Selecting previously unselected package perl-modules-5.38. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67568 files and directories currently installed.) 172s Preparing to unpack .../0-perl-modules-5.38_5.38.2-3.2_all.deb ... 172s Unpacking perl-modules-5.38 (5.38.2-3.2) ... 173s Selecting previously unselected package libgdbm-compat4t64:ppc64el. 173s Preparing to unpack .../1-libgdbm-compat4t64_1.23-5.1_ppc64el.deb ... 173s Unpacking libgdbm-compat4t64:ppc64el (1.23-5.1) ... 173s Selecting previously unselected package libperl5.38t64:ppc64el. 173s Preparing to unpack .../2-libperl5.38t64_5.38.2-3.2_ppc64el.deb ... 173s Unpacking libperl5.38t64:ppc64el (5.38.2-3.2) ... 173s Selecting previously unselected package perl. 173s Preparing to unpack .../3-perl_5.38.2-3.2_ppc64el.deb ... 173s Unpacking perl (5.38.2-3.2) ... 173s Selecting previously unselected package libdpkg-perl. 173s Preparing to unpack .../4-libdpkg-perl_1.22.4ubuntu5_all.deb ... 173s Unpacking libdpkg-perl (1.22.4ubuntu5) ... 173s Selecting previously unselected package make. 173s Preparing to unpack .../5-make_4.3-4.1build1_ppc64el.deb ... 173s Unpacking make (4.3-4.1build1) ... 173s Selecting previously unselected package lto-disabled-list. 173s Preparing to unpack .../6-lto-disabled-list_47_all.deb ... 173s Unpacking lto-disabled-list (47) ... 173s Selecting previously unselected package dpkg-dev. 173s Preparing to unpack .../7-dpkg-dev_1.22.4ubuntu5_all.deb ... 173s Unpacking dpkg-dev (1.22.4ubuntu5) ... 173s Setting up lto-disabled-list (47) ... 173s Setting up libgdbm-compat4t64:ppc64el (1.23-5.1) ... 173s Setting up make (4.3-4.1build1) ... 173s Setting up perl-modules-5.38 (5.38.2-3.2) ... 173s Setting up libperl5.38t64:ppc64el (5.38.2-3.2) ... 173s Setting up perl (5.38.2-3.2) ... 173s Setting up libdpkg-perl (1.22.4ubuntu5) ... 173s Setting up dpkg-dev (1.22.4ubuntu5) ... 173s Processing triggers for man-db (2.12.0-3) ... 174s Processing triggers for libc-bin (2.39-0ubuntu2) ... 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s The following packages will be REMOVED: 178s cloud-init* python3-configobj* python3-debconf* 179s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 179s After this operation, 3252 kB disk space will be freed. 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70114 files and directories currently installed.) 179s Removing cloud-init (24.1.1-0ubuntu1) ... 179s Removing python3-configobj (5.0.8-3) ... 179s Removing python3-debconf (1.5.86) ... 179s Processing triggers for man-db (2.12.0-3) ... 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69725 files and directories currently installed.) 180s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 180s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 180s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 181s linux-generic is already the newest version (6.8.0-11.11+1). 181s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 181s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 182s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 182s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 182s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 182s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 186s Reading package lists... 186s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 186s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 186s Reading package lists... 186s Building dependency tree... 186s Reading state information... 186s Calculating upgrade... 186s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 186s Reading package lists... 187s Building dependency tree... 187s Reading state information... 187s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 187s autopkgtest [12:21:56]: rebooting testbed after setup commands that affected boot 364s autopkgtest [12:24:53]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 364s autopkgtest [12:24:53]: testbed dpkg architecture: ppc64el 365s autopkgtest [12:24:54]: @@@@@@@@@@@@@@@@@@@@ apt-source vcftools 366s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 366s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 366s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 367s Get:1 http://ftpmaster.internal/ubuntu noble/universe vcftools 0.1.16-3 (dsc) [2071 B] 367s Get:2 http://ftpmaster.internal/ubuntu noble/universe vcftools 0.1.16-3 (tar) [245 kB] 367s Get:3 http://ftpmaster.internal/ubuntu noble/universe vcftools 0.1.16-3 (diff) [14.0 kB] 367s gpgv: Signature made Thu Oct 7 06:07:18 2021 UTC 367s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 367s gpgv: issuer "tille@debian.org" 367s gpgv: Can't check signature: No public key 367s dpkg-source: warning: cannot verify inline signature for ./vcftools_0.1.16-3.dsc: no acceptable signature found 368s autopkgtest [12:24:57]: testing package vcftools version 0.1.16-3 368s autopkgtest [12:24:57]: build not needed 368s autopkgtest [12:24:57]: test run-unit-test: preparing testbed 373s Reading package lists... 373s Building dependency tree... 373s Reading state information... 373s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 373s Starting 2 pkgProblemResolver with broken count: 0 373s Done 373s Done 374s Starting pkgProblemResolver with broken count: 0 374s Starting 2 pkgProblemResolver with broken count: 0 374s Done 374s The following additional packages will be installed: 374s libalgorithm-diff-perl libcapture-tiny-perl libclass-data-inheritable-perl 374s libdeflate0 libdevel-stacktrace-perl libexception-class-perl libhtscodecs2 374s libsub-uplevel-perl libtest-deep-perl libtest-differences-perl 374s libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl 374s tabix vcftools 374s Recommended packages: 374s libalgorithm-diff-xs-perl 374s The following NEW packages will be installed: 374s libalgorithm-diff-perl libcapture-tiny-perl libclass-data-inheritable-perl 374s libdeflate0 libdevel-stacktrace-perl libexception-class-perl libhtscodecs2 374s libsub-uplevel-perl libtest-deep-perl libtest-differences-perl 374s libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl 374s tabix vcftools 374s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 374s 1 not fully installed or removed. 374s Need to get 1576 kB of archives. 374s After this operation, 6461 kB of additional disk space will be used. 374s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 374s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 374s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el tabix ppc64el 1.18+ds-1 [692 kB] 375s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libclass-data-inheritable-perl all 0.08-3 [8084 B] 375s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libdevel-stacktrace-perl all 2.0500-1 [22.1 kB] 375s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libexception-class-perl all 1.45-1 [28.6 kB] 375s Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtest-deep-perl all 1.204-1 [47.1 kB] 375s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libcapture-tiny-perl all 0.48-2 [20.2 kB] 375s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libalgorithm-diff-perl all 1.201-1 [41.8 kB] 375s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtext-diff-perl all 1.45-2 [25.6 kB] 375s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtest-differences-perl all 0.71-1 [15.8 kB] 375s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsub-uplevel-perl all 0.2800-3 [11.6 kB] 375s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtest-exception-perl all 0.43-3 [13.4 kB] 375s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtest-warn-perl all 0.37-2 [12.6 kB] 375s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtest-most-perl all 0.38-1 [21.5 kB] 375s Get:16 http://ftpmaster.internal/ubuntu noble/universe ppc64el vcftools ppc64el 0.1.16-3 [445 kB] 375s Fetched 1576 kB in 1s (1582 kB/s) 375s Selecting previously unselected package libdeflate0:ppc64el. 375s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69670 files and directories currently installed.) 375s Preparing to unpack .../00-libdeflate0_1.19-1_ppc64el.deb ... 375s Unpacking libdeflate0:ppc64el (1.19-1) ... 375s Selecting previously unselected package libhtscodecs2:ppc64el. 375s Preparing to unpack .../01-libhtscodecs2_1.6.0-1_ppc64el.deb ... 375s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 375s Selecting previously unselected package tabix. 375s Preparing to unpack .../02-tabix_1.18+ds-1_ppc64el.deb ... 375s Unpacking tabix (1.18+ds-1) ... 375s Selecting previously unselected package libclass-data-inheritable-perl. 375s Preparing to unpack .../03-libclass-data-inheritable-perl_0.08-3_all.deb ... 375s Unpacking libclass-data-inheritable-perl (0.08-3) ... 375s Selecting previously unselected package libdevel-stacktrace-perl. 375s Preparing to unpack .../04-libdevel-stacktrace-perl_2.0500-1_all.deb ... 375s Unpacking libdevel-stacktrace-perl (2.0500-1) ... 375s Selecting previously unselected package libexception-class-perl. 375s Preparing to unpack .../05-libexception-class-perl_1.45-1_all.deb ... 375s Unpacking libexception-class-perl (1.45-1) ... 376s Selecting previously unselected package libtest-deep-perl. 376s Preparing to unpack .../06-libtest-deep-perl_1.204-1_all.deb ... 376s Unpacking libtest-deep-perl (1.204-1) ... 376s Selecting previously unselected package libcapture-tiny-perl. 376s Preparing to unpack .../07-libcapture-tiny-perl_0.48-2_all.deb ... 376s Unpacking libcapture-tiny-perl (0.48-2) ... 376s Selecting previously unselected package libalgorithm-diff-perl. 376s Preparing to unpack .../08-libalgorithm-diff-perl_1.201-1_all.deb ... 376s Unpacking libalgorithm-diff-perl (1.201-1) ... 376s Selecting previously unselected package libtext-diff-perl. 376s Preparing to unpack .../09-libtext-diff-perl_1.45-2_all.deb ... 376s Unpacking libtext-diff-perl (1.45-2) ... 376s Selecting previously unselected package libtest-differences-perl. 376s Preparing to unpack .../10-libtest-differences-perl_0.71-1_all.deb ... 376s Unpacking libtest-differences-perl (0.71-1) ... 376s Selecting previously unselected package libsub-uplevel-perl. 376s Preparing to unpack .../11-libsub-uplevel-perl_0.2800-3_all.deb ... 376s Unpacking libsub-uplevel-perl (0.2800-3) ... 376s Selecting previously unselected package libtest-exception-perl. 376s Preparing to unpack .../12-libtest-exception-perl_0.43-3_all.deb ... 376s Unpacking libtest-exception-perl (0.43-3) ... 376s Selecting previously unselected package libtest-warn-perl. 376s Preparing to unpack .../13-libtest-warn-perl_0.37-2_all.deb ... 376s Unpacking libtest-warn-perl (0.37-2) ... 376s Selecting previously unselected package libtest-most-perl. 376s Preparing to unpack .../14-libtest-most-perl_0.38-1_all.deb ... 376s Unpacking libtest-most-perl (0.38-1) ... 376s Selecting previously unselected package vcftools. 376s Preparing to unpack .../15-vcftools_0.1.16-3_ppc64el.deb ... 376s Unpacking vcftools (0.1.16-3) ... 376s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 376s Setting up vcftools (0.1.16-3) ... 376s Setting up libtest-deep-perl (1.204-1) ... 376s Setting up libalgorithm-diff-perl (1.201-1) ... 376s Setting up libdeflate0:ppc64el (1.19-1) ... 376s Setting up libclass-data-inheritable-perl (0.08-3) ... 376s Setting up libtext-diff-perl (1.45-2) ... 376s Setting up libcapture-tiny-perl (0.48-2) ... 376s Setting up libsub-uplevel-perl (0.2800-3) ... 376s Setting up libdevel-stacktrace-perl (2.0500-1) ... 376s Setting up tabix (1.18+ds-1) ... 376s Setting up libtest-warn-perl (0.37-2) ... 376s Setting up libtest-differences-perl (0.71-1) ... 376s Setting up libexception-class-perl (1.45-1) ... 376s Setting up libtest-exception-perl (0.43-3) ... 376s Setting up libtest-most-perl (0.38-1) ... 376s Setting up autopkgtest-satdep (0) ... 376s Processing triggers for man-db (2.12.0-3) ... 376s Processing triggers for libc-bin (2.39-0ubuntu2) ... 379s (Reading database ... 69950 files and directories currently installed.) 379s Removing autopkgtest-satdep (0) ... 380s autopkgtest [12:25:09]: test run-unit-test: [----------------------- 380s FaSlice.pm 380s Vcf.pm 380s VcfStats.pm 380s fill-aa 380s fill-an-ac 380s fill-fs 380s fill-ref-md5 380s test.t 380s vcf-annotate 380s vcf-compare 380s vcf-concat 380s vcf-consensus 380s vcf-contrast 380s vcf-convert 380s vcf-fix-newlines 380s vcf-fix-ploidy 380s vcf-indel-stats 380s vcf-isec 380s vcf-merge 380s vcf-phased-join 380s vcf-query 380s vcf-shuffle-cols 380s vcf-sort 380s vcf-stats 380s vcf-subset 380s vcf-to-tab 380s vcf-tstv 380s vcf-validator 380s vcftools 380s 1..68 380s ok 1 - Is bgzip OK? .. cat /tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite/../testdata/merge-test-a.vcf | bgzip -c > /tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite/../testdata/merge-test-a.vcf.gz 380s ok 2 - Is tabix OK? .. tabix /tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite/../testdata/merge-test-a.vcf.gz 380s ok 3 - Testing validator .. perl -I/tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite -MVcf -e validate /tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite/../testdata/valid-3.3.vcf 381s ok 4 - Testing validator .. perl -I/tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite -MVcf -e validate /tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite/../testdata/valid-4.0.vcf 381s ok 5 - Testing validator .. perl -I/tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite -MVcf -e validate /tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite/../testdata/valid-4.1.vcf 381s ok 6 - Testing validator .. perl -I/tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite -MVcf -e validate /tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite/../testdata/floats.vcf 381s ok 7 - Testing formatting followed by validation .. perl -I/tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite -MVcf -e validate 2>&1 381s ok 8 - Testing formatting followed by validation .. perl -I/tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite -MVcf -e validate 2>&1 381s ok 9 - Testing formatting followed by validation .. perl -I/tmp/autopkgtest.2Aq70U/autopkgtest_tmp/testsuite -MVcf -e validate 2>&1 381s ok 10 - Testing next_data_array 381s ok 11 - Testing next_data_array 381s ok 12 - Testing next_data_array 381s ok 13 - Testing next_data_array 381s ok 14 - Testing add_columns with genotypes full, 4.0. 381s ok 15 - Testing add_columns with genotypes brief, 4.0. 381s ok 16 - Testing add_columns brief, 4.0. 381s ok 17 - Testing add_columns no gtypes, 4.0. 381s ok 18 - Testing vcf-isec .. perl -I../. -MVcf /usr/bin/vcf-isec -f -n +2 merge-test-a.vcf.gz merge-test-b.vcf.gz merge-test-c.vcf.gz 381s ok 19 - Testing vcf-query .. perl -I../. -MVcf /usr/bin/vcf-query -f '%CHROM:%POS\tref=%REF\talt=%ALT\tqual=%QUAL\t%INFO/DP[\t%SAMPLE=%GT]\n' cmp-test-a.vcf 381s ok 20 - Testing vcf-shuffle-cols .. perl -I../. -MVcf /usr/bin/vcf-shuffle-cols -t cmp-test-a.vcf shuffle-test.vcf 381s ok 21 - Testing vcf-concat .. perl -I../. -MVcf /usr/bin/vcf-concat -s 3 concat-a.vcf.gz concat-b.vcf.gz concat-c.vcf.gz 381s ok 22 - Testing fill-an-ac .. perl -I../. -MVcf /usr/bin/fill-an-ac concat-a.vcf 381s ok 23 - Testing fill-an-ac .. perl -I../. -MVcf /usr/bin/vcf-indel-stats -e indel-stats.tab < indel-stats.vcf 381s Looks as fasta file snippet, the sequence 1 starts at position 1 381s Looks as fasta file snippet, the sequence 2 starts at position 1 381s ok 24 - Testing vcf-consensus .. perl -I../. -MVcf /usr/bin/vcf-consensus consensus.vcf.gz < consensus.fa 381s Looks as fasta file snippet, the sequence 1 starts at position 1 381s Looks as fasta file snippet, the sequence 2 starts at position 1 381s ok 25 - Testing vcf-consensus .. perl -I../. -MVcf /usr/bin/vcf-consensus -s NA001 consensus.vcf.gz < consensus.fa 381s ok 26 - Testing vcf-fix-ploidy .. cat fix-ploidy.vcf | perl -I../. -MVcf /usr/bin/vcf-fix-ploidy -s fix-ploidy.samples -p fix-ploidy.txt 2>/dev/null | vcf-query -f '%POS[\t%SAMPLE %GTR %PL]\n' 381s ok 27 - Testing API event_type(A,C) .. s 1 C 381s ok 28 - Testing API event_type(A,ACGT) .. i 3 CGT 381s ok 29 - Testing API event_type(ACGT,A) .. i -3 CGT 381s ok 30 - Testing API event_type(ACGT,ACT) .. i -1 G 381s ok 31 - Testing API event_type(ACGT,AAA) .. o 3 AAA 381s ok 32 - Testing API event_type(A,.) .. r 0 A 381s ok 33 - Testing API event_type(A,) .. u 0 381s ok 34 - Testing API event_type(ACG,AGC) .. s 2 AGC 381s ok 35 - Testing API event_type(A,.A) .. b 381s ok 36 - Testing API event_type(A,A.) .. b 381s ok 37 - Testing get_tag_index(GT:GL:PL,'GT',':') 381s ok 38 - Testing get_tag_index(GT:GL:PL,'GL',':') 381s ok 39 - Testing get_tag_index(GT:GL:PL,'PL',':') 381s ok 40 - Testing get_tag_index(GT:GL:PL,0,':') 381s ok 41 - Testing get_tag_index(GT:GL:PL,1,':') 381s ok 42 - Testing get_tag_index(GT:GL:PL,2,':') 381s ok 43 - Testing get_tag_index(GT:GL:PL,'XX',0,':') 381s ok 44 - Testing get_tag_index(GT:GL:PL,'XX',1,':') 381s ok 45 - Testing get_tag_index(GT:GL:PL,'XX',2,':') 381s ok 46 - Testing get_tag_index(GT:GL:PL,'XX',4,':') 381s ok 47 - Testing decode_genotype('C',['G','T'],'0/1/2|1/0|1|2') 381s ok 48 - Testing decode_genotype('C',['G','T'],'2|1') 381s ok 49 - Testing decode_genotype('C',['G','T'],'2') 381s ok 50 - Testing get_info_field(NS=2;HM;AF=0.333;AFA=T;DB,'NS') 381s ok 51 - Testing get_info_field(NS=2;HM;AF=0.333;AFA=T;DB,'AF') 381s ok 52 - Testing get_info_field(NS=2;HM;AF=0.333;AFA=T;DB,'AFA') 381s ok 53 - Testing get_info_field(NS=2;HM;AF=0.333;AFA=T;DB,'HM') 381s ok 54 - Testing get_info_field(NS=2;HM;AF=0.333;AFA=T;DB,'DB') 381s ok 55 - Testing get_info_field(NS=2;HM;AF=0.333;AFA=T;DB,'DBX') 381s ok 56 - Testing get_info_field('DB','DB') 381s ok 57 - Testing get_info_field('XDB','DB') 381s ok 58 - Testing split_gt('0/1') 381s ok 59 - Testing split_gt('0') 381s ok 60 - Testing normalize_alleles(TTGGTAT,TTGGTATCTAGTGGTAT,TGGTATCTAGTGGTAT) 381s ok 61 - Testing normalize_alleles(TT,TCTAGTGGTAAT,TCT) 381s ok 62 - Testing normalize_alleles(TGGGGGG,TGGGGGGG) 381s ok 63 - Testing normalize_alleles(CAAAAAA,CAAAAA) 381s ok 64 - Testing normalize_alleles(CA,CT) 381s ok 65 - Testing normalize_alleles_pos(GAACCCACA,GA) 381s ok 66 - Testing normalize_alleles_pos(CAGTAAAA,CAGAAAA) 381s ok 67 - Testing normalize_alleles_pos(CAGTAAA,CAGAAAA) 381s ok 68 - Testing normalize_alleles_pos(GA,GACC) 381s PASS 382s autopkgtest [12:25:11]: test run-unit-test: -----------------------] 382s run-unit-test PASS 382s autopkgtest [12:25:11]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 382s autopkgtest [12:25:11]: @@@@@@@@@@@@@@@@@@@@ summary 382s run-unit-test PASS 394s Creating nova instance adt-noble-ppc64el-vcftools-20240313-121849-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240313.img (UUID 1799f203-2779-4c2a-9ae5-df9474cae1d2)...