0s autopkgtest [18:45:08]: starting date and time: 2024-03-18 18:45:08+0000 0s autopkgtest [18:45:08]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:45:08]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8vagwp42/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:ncbi-blast+,src:mbedtls --apt-upgrade transdecoder --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ncbi-blast+/2.12.0+ds-4build1 mbedtls/2.28.7-1.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-24.secgroup --name adt-noble-ppc64el-transdecoder-20240318-184508-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 152s autopkgtest [18:47:40]: testbed dpkg architecture: ppc64el 152s autopkgtest [18:47:40]: testbed apt version: 2.7.12 152s autopkgtest [18:47:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 153s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 154s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.0 kB] 154s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB] 154s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 154s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3720 kB] 154s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [643 kB] 154s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 154s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 154s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 154s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4012 kB] 155s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 155s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [48.4 kB] 155s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 158s Fetched 9098 kB in 3s (3627 kB/s) 158s Reading package lists... 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s Calculating upgrade... 162s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 163s sh: Attempting to set up Debian/Ubuntu apt sources automatically 163s sh: Distribution appears to be Ubuntu 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 164s eatmydata is already the newest version (131-1). 164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 164s dbus is already the newest version (1.14.10-4ubuntu1). 164s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 164s Reading package lists... 164s Building dependency tree... 164s Reading state information... 165s rng-tools-debian is already the newest version (2.4). 165s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s The following packages will be REMOVED: 165s cloud-init* python3-configobj* python3-debconf* 165s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 165s After this operation, 3252 kB disk space will be freed. 165s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 165s Removing cloud-init (24.1.1-0ubuntu1) ... 166s Removing python3-configobj (5.0.8-3) ... 166s Removing python3-debconf (1.5.86) ... 166s Processing triggers for man-db (2.12.0-3) ... 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69706 files and directories currently installed.) 167s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 167s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 167s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 167s invoke-rc.d: policy-rc.d denied execution of try-restart. 167s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s linux-generic is already the newest version (6.8.0-11.11+1). 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 168s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 168s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 171s Reading package lists... 171s Reading package lists... 171s Building dependency tree... 171s Reading state information... 171s Calculating upgrade... 171s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s Reading package lists... 172s Building dependency tree... 172s Reading state information... 172s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 172s autopkgtest [18:48:00]: rebooting testbed after setup commands that affected boot 352s autopkgtest [18:51:00]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 355s autopkgtest [18:51:03]: @@@@@@@@@@@@@@@@@@@@ apt-source transdecoder 358s Get:1 http://ftpmaster.internal/ubuntu noble/universe transdecoder 5.7.1-2 (dsc) [2260 B] 358s Get:2 http://ftpmaster.internal/ubuntu noble/universe transdecoder 5.7.1-2 (tar) [15.0 MB] 358s Get:3 http://ftpmaster.internal/ubuntu noble/universe transdecoder 5.7.1-2 (diff) [5940 B] 358s gpgv: Signature made Thu Sep 14 10:39:31 2023 UTC 358s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 358s gpgv: Can't check signature: No public key 358s dpkg-source: warning: cannot verify inline signature for ./transdecoder_5.7.1-2.dsc: no acceptable signature found 359s autopkgtest [18:51:07]: testing package transdecoder version 5.7.1-2 359s autopkgtest [18:51:07]: build not needed 406s autopkgtest [18:51:54]: test run-tests: preparing testbed 408s Reading package lists... 408s Building dependency tree... 408s Reading state information... 408s Starting pkgProblemResolver with broken count: 1 408s Starting 2 pkgProblemResolver with broken count: 1 408s Investigating (0) autopkgtest-satdep:ppc64el < none -> 0 @un puN Ib > 408s Broken autopkgtest-satdep:ppc64el Depends on transdecoder:ppc64el < none | 5.7.1-2 @un uH > 408s Considering transdecoder:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 408s Re-Instated liburi-perl:ppc64el 408s Re-Instated zip:ppc64el 408s Re-Instated unzip:ppc64el 408s Re-Instated libpaper1:ppc64el 408s Re-Instated libpaper-utils:ppc64el 408s Re-Instated xdg-utils:ppc64el 408s Re-Instated libblas3:ppc64el 408s Re-Instated fonts-dejavu-mono:ppc64el 408s Re-Instated fonts-dejavu-core:ppc64el 408s Re-Instated fontconfig-config:ppc64el 408s Re-Instated libfontconfig1:ppc64el 408s Re-Instated libpixman-1-0:ppc64el 408s Re-Instated libxcb-render0:ppc64el 408s Re-Instated libxcb-shm0:ppc64el 408s Re-Instated libxrender1:ppc64el 408s Re-Instated libcairo2:ppc64el 408s Re-Instated libgomp1:ppc64el 408s Re-Instated libjpeg-turbo8:ppc64el 408s Re-Instated libjpeg8:ppc64el 408s Re-Instated libgfortran5:ppc64el 408s Re-Instated liblapack3:ppc64el 408s Re-Instated fontconfig:ppc64el 408s Re-Instated libgraphite2-3:ppc64el 408s Re-Instated libharfbuzz0b:ppc64el 408s Re-Instated libthai-data:ppc64el 408s Re-Instated libdatrie1:ppc64el 408s Re-Instated libthai0:ppc64el 408s Re-Instated libpango-1.0-0:ppc64el 408s Re-Instated libpangoft2-1.0-0:ppc64el 408s Re-Instated libpangocairo-1.0-0:ppc64el 408s Re-Instated libtcl8.6:ppc64el 408s Re-Instated libdeflate0:ppc64el 408s Re-Instated libjbig0:ppc64el 408s Re-Instated liblerc4:ppc64el 408s Re-Instated libsharpyuv0:ppc64el 408s Re-Instated libwebp7:ppc64el 408s Re-Instated libtiff6:ppc64el 408s Re-Instated libxft2:ppc64el 408s Re-Instated x11-common:ppc64el 408s Re-Instated libxss1:ppc64el 408s Re-Instated libtk8.6:ppc64el 408s Re-Instated libice6:ppc64el 408s Re-Instated libsm6:ppc64el 408s Re-Instated libxt6:ppc64el 408s Re-Instated r-base-core:ppc64el 408s Re-Instated transdecoder:ppc64el 408s Broken autopkgtest-satdep:ppc64el Depends on transdecoder-doc:ppc64el < none | 5.7.1-2 @un uH > 408s Considering transdecoder-doc:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 408s Re-Instated transdecoder-doc:ppc64el 408s Broken autopkgtest-satdep:ppc64el Depends on ncbi-blast+:ppc64el < none | 2.12.0+ds-4 @un uH > 408s Considering ncbi-blast+:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 408s Re-Instated ncbi-data:ppc64el 408s Re-Instated libmbedcrypto7:ppc64el 408s Re-Instated libmbedx509-1:ppc64el 408s Re-Instated libmbedtls14:ppc64el 408s Re-Instated ncbi-blast+:ppc64el 408s Broken autopkgtest-satdep:ppc64el Depends on hmmer:ppc64el < none @un H > 408s Done 408s Some packages could not be installed. This may mean that you have 408s requested an impossible situation or if you are using the unstable 408s distribution that some required packages have not yet been created 408s or been moved out of Incoming. 408s The following information may help to resolve the situation: 408s 408s The following packages have unmet dependencies: 408s autopkgtest-satdep : Depends: hmmer but it is not installable 408s E: Unable to correct problems, you have held broken packages. 408s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 409s Reading package lists... 409s Building dependency tree... 409s Reading state information... 409s Starting pkgProblemResolver with broken count: 1 409s Starting 2 pkgProblemResolver with broken count: 1 409s Investigating (0) autopkgtest-satdep:ppc64el < none -> 0 @un puN Ib > 409s Broken autopkgtest-satdep:ppc64el Depends on transdecoder:ppc64el < none | 5.7.1-2 @un uH > 409s Considering transdecoder:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 409s Re-Instated liburi-perl:ppc64el 409s Re-Instated zip:ppc64el 409s Re-Instated unzip:ppc64el 409s Re-Instated libpaper1:ppc64el 409s Re-Instated libpaper-utils:ppc64el 409s Re-Instated xdg-utils:ppc64el 409s Re-Instated libblas3:ppc64el 409s Re-Instated fonts-dejavu-mono:ppc64el 409s Re-Instated fonts-dejavu-core:ppc64el 409s Re-Instated fontconfig-config:ppc64el 409s Re-Instated libfontconfig1:ppc64el 409s Re-Instated libpixman-1-0:ppc64el 409s Re-Instated libxcb-render0:ppc64el 409s Re-Instated libxcb-shm0:ppc64el 409s Re-Instated libxrender1:ppc64el 409s Re-Instated libcairo2:ppc64el 409s Re-Instated libgomp1:ppc64el 409s Re-Instated libjpeg-turbo8:ppc64el 409s Re-Instated libjpeg8:ppc64el 409s Re-Instated libgfortran5:ppc64el 409s Re-Instated liblapack3:ppc64el 409s Re-Instated fontconfig:ppc64el 409s Re-Instated libgraphite2-3:ppc64el 409s Re-Instated libharfbuzz0b:ppc64el 409s Re-Instated libthai-data:ppc64el 409s Re-Instated libdatrie1:ppc64el 409s Re-Instated libthai0:ppc64el 409s Re-Instated libpango-1.0-0:ppc64el 409s Re-Instated libpangoft2-1.0-0:ppc64el 409s Re-Instated libpangocairo-1.0-0:ppc64el 409s Re-Instated libtcl8.6:ppc64el 409s Re-Instated libdeflate0:ppc64el 409s Re-Instated libjbig0:ppc64el 409s Re-Instated liblerc4:ppc64el 409s Re-Instated libsharpyuv0:ppc64el 409s Re-Instated libwebp7:ppc64el 409s Re-Instated libtiff6:ppc64el 409s Re-Instated libxft2:ppc64el 409s Re-Instated x11-common:ppc64el 409s Re-Instated libxss1:ppc64el 409s Re-Instated libtk8.6:ppc64el 409s Re-Instated libice6:ppc64el 409s Re-Instated libsm6:ppc64el 409s Re-Instated libxt6:ppc64el 409s Re-Instated r-base-core:ppc64el 409s Re-Instated transdecoder:ppc64el 409s Broken autopkgtest-satdep:ppc64el Depends on transdecoder-doc:ppc64el < none | 5.7.1-2 @un uH > 409s Considering transdecoder-doc:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 409s Re-Instated transdecoder-doc:ppc64el 409s Broken autopkgtest-satdep:ppc64el Depends on ncbi-blast+:ppc64el < none | 2.12.0+ds-4 @un uH > 409s Considering ncbi-blast+:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 409s Re-Instated ncbi-data:ppc64el 409s Re-Instated libmbedcrypto7:ppc64el 409s Re-Instated libmbedx509-1:ppc64el 409s Re-Instated libmbedtls14:ppc64el 409s Re-Instated ncbi-blast+:ppc64el 409s Broken autopkgtest-satdep:ppc64el Depends on hmmer:ppc64el < none @un H > 409s Done 409s Some packages could not be installed. This may mean that you have 409s requested an impossible situation or if you are using the unstable 409s distribution that some required packages have not yet been created 409s or been moved out of Incoming. 409s The following information may help to resolve the situation: 409s 409s The following packages have unmet dependencies: 409s autopkgtest-satdep : Depends: hmmer but it is not installable 409s E: Unable to correct problems, you have held broken packages. 409s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 409s Reading package lists... 409s Building dependency tree... 409s Reading state information... 409s Package hmmer is not available, but is referred to by another package. 409s This may mean that the package is missing, has been obsoleted, or 409s is only available from another source 409s 409s E: Package 'hmmer' has no installation candidate 409s run-tests SKIP installation fails and skip-not-installable set 409s autopkgtest [18:51:57]: @@@@@@@@@@@@@@@@@@@@ summary 409s run-tests SKIP installation fails and skip-not-installable set 444s Creating nova instance adt-noble-ppc64el-transdecoder-20240318-184508-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240318.img (UUID 290ce4c5-ca44-4691-9a55-79589f8700e4)...