0s autopkgtest [15:49:36]: starting date and time: 2024-03-23 15:49:36+0000 0s autopkgtest [15:49:36]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:49:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6nx_hs7q/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade srst2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-5.secgroup --name adt-noble-ppc64el-srst2-20240323-154935-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 105s autopkgtest [15:51:21]: testbed dpkg architecture: ppc64el 106s autopkgtest [15:51:22]: testbed apt version: 2.7.12 106s autopkgtest [15:51:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 107s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 107s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 107s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 107s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 107s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 107s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 107s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 107s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 107s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 107s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 108s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 108s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 108s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 111s Fetched 9623 kB in 2s (3856 kB/s) 111s Reading package lists... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s Calculating upgrade... 114s The following packages will be REMOVED: 114s libssl3 114s The following NEW packages will be installed: 114s libssl3t64 114s The following packages have been kept back: 114s curl 114s The following packages will be upgraded: 114s cloud-init fonts-ubuntu-console libbsd0 libc-bin libc6 locales openssl 114s python3-markupsafe 114s 8 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 114s Need to get 12.1 MB of archives. 114s After this operation, 10.2 kB of additional disk space will be used. 114s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6 ppc64el 2.39-0ubuntu6 [3274 kB] 115s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-bin ppc64el 2.39-0ubuntu6 [751 kB] 115s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 115s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 115s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libbsd0 ppc64el 0.12.1-1 [56.9 kB] 115s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el locales all 2.39-0ubuntu6 [4232 kB] 115s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 115s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-markupsafe ppc64el 2.1.5-1build1 [13.2 kB] 115s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el cloud-init all 24.1.2-0ubuntu1 [597 kB] 116s Preconfiguring packages ... 116s Fetched 12.1 MB in 1s (9335 kB/s) 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 116s Preparing to unpack .../libc6_2.39-0ubuntu6_ppc64el.deb ... 116s Unpacking libc6:ppc64el (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 116s Setting up libc6:ppc64el (2.39-0ubuntu6) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 117s Preparing to unpack .../libc-bin_2.39-0ubuntu6_ppc64el.deb ... 117s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 117s Setting up libc-bin (2.39-0ubuntu6) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 117s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 117s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 117s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 117s wget depends on libssl3 (>= 3.0.0). 117s tnftp depends on libssl3 (>= 3.0.0). 117s tcpdump depends on libssl3 (>= 3.0.0). 117s systemd-resolved depends on libssl3 (>= 3.0.0). 117s systemd depends on libssl3 (>= 3.0.0). 117s sudo depends on libssl3 (>= 3.0.0). 117s rsync depends on libssl3 (>= 3.0.0). 117s python3-cryptography depends on libssl3 (>= 3.0.0). 117s openssh-server depends on libssl3 (>= 3.0.10). 117s openssh-client depends on libssl3 (>= 3.0.10). 117s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 117s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 117s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 117s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 117s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 117s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 117s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 117s libnvme1 depends on libssl3 (>= 3.0.0). 117s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 117s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 117s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 117s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 117s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 117s kmod depends on libssl3 (>= 3.0.0). 117s dhcpcd-base depends on libssl3 (>= 3.0.0). 117s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 117s 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 117s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 117s Selecting previously unselected package libssl3t64:ppc64el. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70146 files and directories currently installed.) 117s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 117s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 117s Preparing to unpack .../1-libbsd0_0.12.1-1_ppc64el.deb ... 117s Unpacking libbsd0:ppc64el (0.12.1-1) over (0.11.8-1) ... 117s Preparing to unpack .../2-locales_2.39-0ubuntu6_all.deb ... 117s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 117s Preparing to unpack .../3-fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 117s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 117s Preparing to unpack .../4-python3-markupsafe_2.1.5-1build1_ppc64el.deb ... 117s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 117s Preparing to unpack .../5-cloud-init_24.1.2-0ubuntu1_all.deb ... 117s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 118s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 118s Setting up cloud-init (24.1.2-0ubuntu1) ... 119s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 119s Setting up locales (2.39-0ubuntu6) ... 119s Generating locales (this might take a while)... 121s en_US.UTF-8... done 121s Generation complete. 121s Setting up python3-markupsafe (2.1.5-1build1) ... 121s Setting up openssl (3.0.13-0ubuntu2) ... 121s Setting up libbsd0:ppc64el (0.12.1-1) ... 121s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 121s Processing triggers for man-db (2.12.0-3) ... 122s Processing triggers for libc-bin (2.39-0ubuntu6) ... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 123s sh: Attempting to set up Debian/Ubuntu apt sources automatically 123s sh: Distribution appears to be Ubuntu 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s eatmydata is already the newest version (131-1). 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s dbus is already the newest version (1.14.10-4ubuntu1). 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 124s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s rng-tools-debian is already the newest version (2.4). 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s The following packages will be REMOVED: 125s cloud-init* python3-configobj* python3-debconf* 125s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 125s After this operation, 3256 kB disk space will be freed. 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 125s Removing cloud-init (24.1.2-0ubuntu1) ... 126s Removing python3-configobj (5.0.8-3) ... 126s Removing python3-debconf (1.5.86) ... 126s Processing triggers for man-db (2.12.0-3) ... 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 126s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 127s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 127s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 127s invoke-rc.d: policy-rc.d denied execution of try-restart. 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s linux-generic is already the newest version (6.8.0-11.11+1). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 128s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 128s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 130s Reading package lists... 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s Calculating upgrade... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s autopkgtest [15:51:47]: rebooting testbed after setup commands that affected boot 286s autopkgtest [15:54:22]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 289s autopkgtest [15:54:25]: @@@@@@@@@@@@@@@@@@@@ apt-source srst2 291s Get:1 http://ftpmaster.internal/ubuntu noble/universe srst2 0.2.0-11 (dsc) [2144 B] 291s Get:2 http://ftpmaster.internal/ubuntu noble/universe srst2 0.2.0-11 (tar) [1380 kB] 291s Get:3 http://ftpmaster.internal/ubuntu noble/universe srst2 0.2.0-11 (diff) [17.9 kB] 291s gpgv: Signature made Thu Jan 18 20:18:47 2024 UTC 291s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 291s gpgv: issuer "tille@debian.org" 291s gpgv: Can't check signature: No public key 291s dpkg-source: warning: cannot verify inline signature for ./srst2_0.2.0-11.dsc: no acceptable signature found 291s autopkgtest [15:54:27]: testing package srst2 version 0.2.0-11 292s autopkgtest [15:54:28]: build not needed 294s autopkgtest [15:54:30]: test run-unit-test: preparing testbed 307s Reading package lists... 307s Building dependency tree... 307s Reading state information... 308s Starting pkgProblemResolver with broken count: 0 308s Starting 2 pkgProblemResolver with broken count: 0 308s Done 308s The following additional packages will be installed: 308s bowtie2 cd-hit fontconfig-config fonts-dejavu-core fonts-dejavu-extra 308s fonts-dejavu-mono fonts-urw-base35 libblas3 libcairo2 libdeflate0 308s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 308s libharfbuzz0b libhts3 libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 308s libjpeg8 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 308s libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 308s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python3-biopython 308s python3-cairo python3-decorator python3-freetype python3-mock python3-numpy 308s python3-pil python3-reportlab python3-rlpycairo python3-scipy samtools 308s sgml-base srst2 w3c-sgml-lib x11-common xfonts-encodings xfonts-utils 308s xml-core 308s Suggested packages: 308s bowtie2-examples fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 308s liblcms2-utils python3-tk bwa clustalo clustalw dialign dssp emboss fasttree 308s mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib 308s python3-mmtf python3-rdflib python3-psycopg2 raxml t-coffee wise 308s python-mock-doc gcc gfortran python3-dev python3-pytest python-pil-doc 308s pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel 308s rl-renderpm python-scipy-doc cwltool sgml-base-doc debhelper 308s Recommended packages: 308s python-biopython-doc ncbi-blast+ python3-olefile g++ | c++-compiler 308s python3-rpy2 308s The following NEW packages will be installed: 308s autopkgtest-satdep bowtie2 cd-hit fontconfig-config fonts-dejavu-core 308s fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 libblas3 libcairo2 308s libdeflate0 libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 308s libharfbuzz0b libhts3 libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 308s libjpeg8 liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 308s libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 308s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python3-biopython 308s python3-cairo python3-decorator python3-freetype python3-mock python3-numpy 308s python3-pil python3-reportlab python3-rlpycairo python3-scipy samtools 308s sgml-base srst2 w3c-sgml-lib x11-common xfonts-encodings xfonts-utils 308s xml-core 308s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 308s Need to get 56.5 MB/56.5 MB of archives. 308s After this operation, 241 MB of additional disk space will be used. 308s Get:1 /tmp/autopkgtest.Wm0ZaJ/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 308s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el sgml-base all 1.31 [11.4 kB] 308s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 308s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el cd-hit ppc64el 4.8.1-4 [547 kB] 308s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 308s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 309s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontenc1 ppc64el 1:1.1.8-1 [15.7 kB] 309s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 309s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 309s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-utils ppc64el 1:7.7+6build2 [112 kB] 309s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 309s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 309s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-extra all 2.37-8 [1947 kB] 309s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 309s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 309s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB] 309s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] 309s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] 309s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 309s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB] 309s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 309s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 309s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 309s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 309s Get:25 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 309s Get:26 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 309s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB] 309s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 309s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 309s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 309s Get:31 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1 [32.8 kB] 309s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] 309s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 309s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB] 309s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 309s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 309s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 309s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 309s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB] 309s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB] 309s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 309s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB] 309s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB] 309s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-cairo ppc64el 1.25.1-2 [162 kB] 309s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-freetype all 2.4.0-1 [83.1 kB] 309s Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 309s Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-reportlab all 4.1.0-1 [683 kB] 309s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el xml-core all 0.19 [20.3 kB] 309s Get:49 http://ftpmaster.internal/ubuntu noble/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 309s Get:50 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biopython ppc64el 1.81+dfsg-3 [1738 kB] 309s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 309s Get:52 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools ppc64el 1.19.2-1 [669 kB] 309s Get:53 http://ftpmaster.internal/ubuntu noble/universe ppc64el bowtie2 ppc64el 2.5.2-1 [1367 kB] 309s Get:54 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-scipy ppc64el 1.11.4-6 [21.4 MB] 310s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el srst2 ppc64el 0.2.0-11 [61.8 kB] 310s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mock all 5.1.0-1 [64.1 kB] 310s Fetched 56.5 MB in 2s (26.7 MB/s) 310s Selecting previously unselected package sgml-base. 310s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 310s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 310s Unpacking sgml-base (1.31) ... 310s Selecting previously unselected package libgomp1:ppc64el. 310s Preparing to unpack .../01-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 310s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 310s Selecting previously unselected package cd-hit. 310s Preparing to unpack .../02-cd-hit_4.8.1-4_ppc64el.deb ... 310s Unpacking cd-hit (4.8.1-4) ... 310s Selecting previously unselected package fonts-dejavu-mono. 310s Preparing to unpack .../03-fonts-dejavu-mono_2.37-8_all.deb ... 310s Unpacking fonts-dejavu-mono (2.37-8) ... 310s Selecting previously unselected package fonts-dejavu-core. 310s Preparing to unpack .../04-fonts-dejavu-core_2.37-8_all.deb ... 311s Unpacking fonts-dejavu-core (2.37-8) ... 311s Selecting previously unselected package libfontenc1:ppc64el. 311s Preparing to unpack .../05-libfontenc1_1%3a1.1.8-1_ppc64el.deb ... 311s Unpacking libfontenc1:ppc64el (1:1.1.8-1) ... 311s Selecting previously unselected package x11-common. 311s Preparing to unpack .../06-x11-common_1%3a7.7+23ubuntu2_all.deb ... 311s Unpacking x11-common (1:7.7+23ubuntu2) ... 311s Selecting previously unselected package xfonts-encodings. 311s Preparing to unpack .../07-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 311s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 311s Selecting previously unselected package xfonts-utils. 311s Preparing to unpack .../08-xfonts-utils_1%3a7.7+6build2_ppc64el.deb ... 311s Unpacking xfonts-utils (1:7.7+6build2) ... 311s Selecting previously unselected package fonts-urw-base35. 311s Preparing to unpack .../09-fonts-urw-base35_20200910-8_all.deb ... 311s Unpacking fonts-urw-base35 (20200910-8) ... 311s Selecting previously unselected package fontconfig-config. 311s Preparing to unpack .../10-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 311s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 311s Selecting previously unselected package fonts-dejavu-extra. 311s Preparing to unpack .../11-fonts-dejavu-extra_2.37-8_all.deb ... 311s Unpacking fonts-dejavu-extra (2.37-8) ... 311s Selecting previously unselected package libblas3:ppc64el. 311s Preparing to unpack .../12-libblas3_3.12.0-3_ppc64el.deb ... 311s Unpacking libblas3:ppc64el (3.12.0-3) ... 311s Selecting previously unselected package libfontconfig1:ppc64el. 311s Preparing to unpack .../13-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 311s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 311s Selecting previously unselected package libpixman-1-0:ppc64el. 311s Preparing to unpack .../14-libpixman-1-0_0.42.2-1_ppc64el.deb ... 311s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ... 311s Selecting previously unselected package libxcb-render0:ppc64el. 311s Preparing to unpack .../15-libxcb-render0_1.15-1_ppc64el.deb ... 311s Unpacking libxcb-render0:ppc64el (1.15-1) ... 311s Selecting previously unselected package libxcb-shm0:ppc64el. 311s Preparing to unpack .../16-libxcb-shm0_1.15-1_ppc64el.deb ... 311s Unpacking libxcb-shm0:ppc64el (1.15-1) ... 311s Selecting previously unselected package libxrender1:ppc64el. 311s Preparing to unpack .../17-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 311s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 311s Selecting previously unselected package libcairo2:ppc64el. 311s Preparing to unpack .../18-libcairo2_1.18.0-1_ppc64el.deb ... 311s Unpacking libcairo2:ppc64el (1.18.0-1) ... 311s Selecting previously unselected package libdeflate0:ppc64el. 311s Preparing to unpack .../19-libdeflate0_1.19-1_ppc64el.deb ... 311s Unpacking libdeflate0:ppc64el (1.19-1) ... 311s Selecting previously unselected package libgfortran5:ppc64el. 311s Preparing to unpack .../20-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 311s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 311s Selecting previously unselected package libgraphite2-3:ppc64el. 311s Preparing to unpack .../21-libgraphite2-3_1.3.14-2_ppc64el.deb ... 311s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 311s Selecting previously unselected package libharfbuzz0b:ppc64el. 311s Preparing to unpack .../22-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 311s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 311s Selecting previously unselected package libhtscodecs2:ppc64el. 311s Preparing to unpack .../23-libhtscodecs2_1.6.0-1_ppc64el.deb ... 311s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 311s Selecting previously unselected package libhts3:ppc64el. 311s Preparing to unpack .../24-libhts3_1.18+ds-1_ppc64el.deb ... 311s Unpacking libhts3:ppc64el (1.18+ds-1) ... 311s Selecting previously unselected package libimagequant0:ppc64el. 311s Preparing to unpack .../25-libimagequant0_2.18.0-1_ppc64el.deb ... 311s Unpacking libimagequant0:ppc64el (2.18.0-1) ... 311s Selecting previously unselected package libjpeg-turbo8:ppc64el. 311s Preparing to unpack .../26-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 311s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 311s Selecting previously unselected package libjpeg8:ppc64el. 311s Preparing to unpack .../27-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 311s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 311s Selecting previously unselected package liblapack3:ppc64el. 311s Preparing to unpack .../28-liblapack3_3.12.0-3_ppc64el.deb ... 311s Unpacking liblapack3:ppc64el (3.12.0-3) ... 311s Selecting previously unselected package liblbfgsb0:ppc64el. 311s Preparing to unpack .../29-liblbfgsb0_3.0+dfsg.4-1_ppc64el.deb ... 311s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 311s Selecting previously unselected package liblcms2-2:ppc64el. 311s Preparing to unpack .../30-liblcms2-2_2.14-2_ppc64el.deb ... 311s Unpacking liblcms2-2:ppc64el (2.14-2) ... 311s Selecting previously unselected package liblerc4:ppc64el. 311s Preparing to unpack .../31-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 311s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 311s Selecting previously unselected package libraqm0:ppc64el. 311s Preparing to unpack .../32-libraqm0_0.10.1-1_ppc64el.deb ... 311s Unpacking libraqm0:ppc64el (0.10.1-1) ... 311s Selecting previously unselected package libsharpyuv0:ppc64el. 311s Preparing to unpack .../33-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 311s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 311s Selecting previously unselected package libjbig0:ppc64el. 311s Preparing to unpack .../34-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 311s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 311s Selecting previously unselected package libwebp7:ppc64el. 311s Preparing to unpack .../35-libwebp7_1.3.2-0.4_ppc64el.deb ... 311s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 311s Selecting previously unselected package libtiff6:ppc64el. 311s Preparing to unpack .../36-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 311s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 312s Selecting previously unselected package libwebpdemux2:ppc64el. 312s Preparing to unpack .../37-libwebpdemux2_1.3.2-0.4_ppc64el.deb ... 312s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ... 312s Selecting previously unselected package libwebpmux3:ppc64el. 312s Preparing to unpack .../38-libwebpmux3_1.3.2-0.4_ppc64el.deb ... 312s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ... 312s Selecting previously unselected package python3-numpy. 312s Preparing to unpack .../39-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 312s Unpacking python3-numpy (1:1.24.2-2) ... 312s Selecting previously unselected package libopenjp2-7:ppc64el. 312s Preparing to unpack .../40-libopenjp2-7_2.5.0-2_ppc64el.deb ... 312s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ... 312s Selecting previously unselected package python3-pil:ppc64el. 312s Preparing to unpack .../41-python3-pil_10.2.0-1_ppc64el.deb ... 312s Unpacking python3-pil:ppc64el (10.2.0-1) ... 312s Selecting previously unselected package python3-cairo. 312s Preparing to unpack .../42-python3-cairo_1.25.1-2_ppc64el.deb ... 312s Unpacking python3-cairo (1.25.1-2) ... 312s Selecting previously unselected package python3-freetype. 312s Preparing to unpack .../43-python3-freetype_2.4.0-1_all.deb ... 312s Unpacking python3-freetype (2.4.0-1) ... 312s Selecting previously unselected package python3-rlpycairo. 312s Preparing to unpack .../44-python3-rlpycairo_0.3.0-3_all.deb ... 312s Unpacking python3-rlpycairo (0.3.0-3) ... 312s Selecting previously unselected package python3-reportlab. 312s Preparing to unpack .../45-python3-reportlab_4.1.0-1_all.deb ... 312s Unpacking python3-reportlab (4.1.0-1) ... 312s Selecting previously unselected package xml-core. 312s Preparing to unpack .../46-xml-core_0.19_all.deb ... 312s Unpacking xml-core (0.19) ... 312s Selecting previously unselected package w3c-sgml-lib. 312s Preparing to unpack .../47-w3c-sgml-lib_1.3-3_all.deb ... 312s Unpacking w3c-sgml-lib (1.3-3) ... 312s Selecting previously unselected package python3-biopython. 312s Preparing to unpack .../48-python3-biopython_1.81+dfsg-3_ppc64el.deb ... 312s Unpacking python3-biopython (1.81+dfsg-3) ... 312s Selecting previously unselected package python3-decorator. 312s Preparing to unpack .../49-python3-decorator_5.1.1-5_all.deb ... 312s Unpacking python3-decorator (5.1.1-5) ... 312s Selecting previously unselected package samtools. 312s Preparing to unpack .../50-samtools_1.19.2-1_ppc64el.deb ... 312s Unpacking samtools (1.19.2-1) ... 312s Selecting previously unselected package bowtie2. 312s Preparing to unpack .../51-bowtie2_2.5.2-1_ppc64el.deb ... 312s Unpacking bowtie2 (2.5.2-1) ... 312s Selecting previously unselected package python3-scipy. 312s Preparing to unpack .../52-python3-scipy_1.11.4-6_ppc64el.deb ... 312s Unpacking python3-scipy (1.11.4-6) ... 313s Selecting previously unselected package srst2. 313s Preparing to unpack .../53-srst2_0.2.0-11_ppc64el.deb ... 313s Unpacking srst2 (0.2.0-11) ... 313s Selecting previously unselected package python3-mock. 313s Preparing to unpack .../54-python3-mock_5.1.0-1_all.deb ... 313s Unpacking python3-mock (5.1.0-1) ... 313s Selecting previously unselected package autopkgtest-satdep. 313s Preparing to unpack .../55-1-autopkgtest-satdep.deb ... 313s Unpacking autopkgtest-satdep (0) ... 313s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 313s Setting up libgraphite2-3:ppc64el (1.3.14-2) ... 313s Setting up liblcms2-2:ppc64el (2.14-2) ... 313s Setting up libpixman-1-0:ppc64el (0.42.2-1) ... 313s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ... 313s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 313s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ... 313s Setting up libxcb-render0:ppc64el (1.15-1) ... 313s Setting up x11-common (1:7.7+23ubuntu2) ... 314s Setting up libdeflate0:ppc64el (1.19-1) ... 314s Setting up libxcb-shm0:ppc64el (1.15-1) ... 314s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ... 314s Setting up python3-freetype (2.4.0-1) ... 314s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ... 314s Setting up bowtie2 (2.5.2-1) ... 314s Setting up python3-mock (5.1.0-1) ... 314s Setting up python3-decorator (5.1.1-5) ... 314s Setting up libfontenc1:ppc64el (1:1.1.8-1) ... 314s Setting up libblas3:ppc64el (3.12.0-3) ... 314s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 314s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 314s Setting up libimagequant0:ppc64el (2.18.0-1) ... 314s Setting up fonts-dejavu-mono (2.37-8) ... 314s Setting up fonts-dejavu-core (2.37-8) ... 314s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 314s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 314s Setting up libwebp7:ppc64el (1.3.2-0.4) ... 314s Setting up fonts-dejavu-extra (2.37-8) ... 314s Setting up libopenjp2-7:ppc64el (2.5.0-2) ... 314s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ... 314s Setting up sgml-base (1.31) ... 314s Setting up libwebpmux3:ppc64el (1.3.2-0.4) ... 314s Setting up cd-hit (4.8.1-4) ... 314s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 314s Setting up liblapack3:ppc64el (3.12.0-3) ... 314s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 314s Setting up libhts3:ppc64el (1.18+ds-1) ... 314s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 314s Setting up libwebpdemux2:ppc64el (1.3.2-0.4) ... 314s Setting up xfonts-utils (1:7.7+6build2) ... 314s Setting up samtools (1.19.2-1) ... 314s Setting up libraqm0:ppc64el (0.10.1-1) ... 314s Setting up python3-numpy (1:1.24.2-2) ... 316s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 316s Setting up xml-core (0.19) ... 317s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 317s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 317s Setting up python3-scipy (1.11.4-6) ... 320s Setting up fonts-urw-base35 (20200910-8) ... 320s Setting up libcairo2:ppc64el (1.18.0-1) ... 320s Setting up python3-pil:ppc64el (10.2.0-1) ... 320s Setting up python3-cairo (1.25.1-2) ... 320s Setting up python3-rlpycairo (0.3.0-3) ... 320s Setting up python3-reportlab (4.1.0-1) ... 321s Processing triggers for libc-bin (2.39-0ubuntu6) ... 321s Processing triggers for man-db (2.12.0-3) ... 322s Processing triggers for sgml-base (1.31) ... 322s Setting up w3c-sgml-lib (1.3-3) ... 349s Setting up python3-biopython (1.81+dfsg-3) ... 350s Setting up srst2 (0.2.0-11) ... 351s /usr/share/srst2/database_clustering/VFDB_cdhit_to_csv.py:53: SyntaxWarning: invalid escape sequence '\(' 351s in_brackets = re.findall('\((.*?)\)', full_name) 351s /usr/share/srst2/database_clustering/align_plot_tree_min3.py:28: SyntaxWarning: invalid escape sequence '\.' 351s r(''' 351s /usr/share/srst2/getmlst.py:181: SyntaxWarning: invalid escape sequence '\d' 351s m = re.match('>(.*)([_-])(\d*)',head).groups() 351s /usr/share/srst2/srst2.py:90: SyntaxWarning: invalid escape sequence '\-' 351s parser.add_argument('--other', type=str, help='Other arguments to pass to bowtie2 (must be escaped, e.g. "\--no-mixed".', required=False) 351s /usr/share/srst2/srst2.py:99: SyntaxWarning: invalid escape sequence '\-' 351s parser.add_argument('--samtools_args', type=str, help='Other arguments to pass to samtools mpileup (must be escaped, e.g. "\-A").', required=False) 351s /usr/share/srst2/srst2.py:241: SyntaxWarning: invalid escape sequence '\d' 351s m = re.search("NM:i:(\d+)\s",line) 351s Setting up autopkgtest-satdep (0) ... 353s (Reading database ... 74726 files and directories currently installed.) 353s Removing autopkgtest-satdep (0) ... 354s autopkgtest [15:55:30]: test run-unit-test: [----------------------- 354s ........... 354s ---------------------------------------------------------------------- 354s Ran 11 tests in 0.023s 354s 354s OK 355s ................. 355s ---------------------------------------------------------------------- 355s Ran 17 tests in 0.035s 355s 355s OK 355s autopkgtest [15:55:31]: test run-unit-test: -----------------------] 355s autopkgtest [15:55:31]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 355s run-unit-test PASS 357s autopkgtest [15:55:33]: @@@@@@@@@@@@@@@@@@@@ summary 357s run-unit-test PASS 372s Creating nova instance adt-noble-ppc64el-srst2-20240323-154935-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240321.img (UUID 024d6af5-fcba-4a84-85f9-01f41e1878d6)...