0s autopkgtest [15:49:32]: starting date and time: 2024-03-23 15:49:32+0000 0s autopkgtest [15:49:32]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:49:32]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kcmweky3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade snpomatic --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-ppc64el-8.secgroup --name adt-noble-ppc64el-snpomatic-20240323-154932-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 97s autopkgtest [15:51:09]: testbed dpkg architecture: ppc64el 97s autopkgtest [15:51:09]: testbed apt version: 2.7.12 97s autopkgtest [15:51:09]: @@@@@@@@@@@@@@@@@@@@ test bed setup 98s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 98s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 98s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 98s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 99s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 99s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 99s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 99s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 99s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 99s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 99s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 99s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 99s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 102s Fetched 9623 kB in 2s (4006 kB/s) 102s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Calculating upgrade... 105s The following packages will be REMOVED: 105s libssl3 105s The following NEW packages will be installed: 105s libssl3t64 105s The following packages have been kept back: 105s curl 105s The following packages will be upgraded: 105s cloud-init fonts-ubuntu-console libbsd0 libc-bin libc6 locales openssl 105s python3-markupsafe 105s 8 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 105s Need to get 12.1 MB of archives. 105s After this operation, 10.2 kB of additional disk space will be used. 105s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6 ppc64el 2.39-0ubuntu6 [3274 kB] 106s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-bin ppc64el 2.39-0ubuntu6 [751 kB] 106s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 106s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 106s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libbsd0 ppc64el 0.12.1-1 [56.9 kB] 106s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el locales all 2.39-0ubuntu6 [4232 kB] 106s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 106s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-markupsafe ppc64el 2.1.5-1build1 [13.2 kB] 106s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el cloud-init all 24.1.2-0ubuntu1 [597 kB] 107s Preconfiguring packages ... 107s Fetched 12.1 MB in 1s (11.9 MB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 107s Preparing to unpack .../libc6_2.39-0ubuntu6_ppc64el.deb ... 107s Unpacking libc6:ppc64el (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 107s Setting up libc6:ppc64el (2.39-0ubuntu6) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 108s Preparing to unpack .../libc-bin_2.39-0ubuntu6_ppc64el.deb ... 108s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 108s Setting up libc-bin (2.39-0ubuntu6) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 108s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 108s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 108s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 108s wget depends on libssl3 (>= 3.0.0). 108s tnftp depends on libssl3 (>= 3.0.0). 108s tcpdump depends on libssl3 (>= 3.0.0). 108s systemd-resolved depends on libssl3 (>= 3.0.0). 108s systemd depends on libssl3 (>= 3.0.0). 108s sudo depends on libssl3 (>= 3.0.0). 108s rsync depends on libssl3 (>= 3.0.0). 108s python3-cryptography depends on libssl3 (>= 3.0.0). 108s openssh-server depends on libssl3 (>= 3.0.10). 108s openssh-client depends on libssl3 (>= 3.0.10). 108s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 108s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 108s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 108s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 108s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 108s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 108s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 108s libnvme1 depends on libssl3 (>= 3.0.0). 108s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 108s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 108s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 108s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 108s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 108s kmod depends on libssl3 (>= 3.0.0). 108s dhcpcd-base depends on libssl3 (>= 3.0.0). 108s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 108s 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 108s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 108s Selecting previously unselected package libssl3t64:ppc64el. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70146 files and directories currently installed.) 108s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 108s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 108s Preparing to unpack .../1-libbsd0_0.12.1-1_ppc64el.deb ... 108s Unpacking libbsd0:ppc64el (0.12.1-1) over (0.11.8-1) ... 108s Preparing to unpack .../2-locales_2.39-0ubuntu6_all.deb ... 108s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 108s Preparing to unpack .../3-fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 108s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 108s Preparing to unpack .../4-python3-markupsafe_2.1.5-1build1_ppc64el.deb ... 108s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 108s Preparing to unpack .../5-cloud-init_24.1.2-0ubuntu1_all.deb ... 109s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 109s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 109s Setting up cloud-init (24.1.2-0ubuntu1) ... 110s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 110s Setting up locales (2.39-0ubuntu6) ... 110s Generating locales (this might take a while)... 112s en_US.UTF-8... done 112s Generation complete. 112s Setting up python3-markupsafe (2.1.5-1build1) ... 112s Setting up openssl (3.0.13-0ubuntu2) ... 112s Setting up libbsd0:ppc64el (0.12.1-1) ... 112s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 112s Processing triggers for man-db (2.12.0-3) ... 113s Processing triggers for libc-bin (2.39-0ubuntu6) ... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 114s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 114s sh: Attempting to set up Debian/Ubuntu apt sources automatically 114s sh: Distribution appears to be Ubuntu 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s eatmydata is already the newest version (131-1). 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s dbus is already the newest version (1.14.10-4ubuntu1). 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s rng-tools-debian is already the newest version (2.4). 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s The following packages will be REMOVED: 116s cloud-init* python3-configobj* python3-debconf* 116s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 116s After this operation, 3256 kB disk space will be freed. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 117s Removing cloud-init (24.1.2-0ubuntu1) ... 117s Removing python3-configobj (5.0.8-3) ... 117s Removing python3-debconf (1.5.86) ... 117s Processing triggers for man-db (2.12.0-3) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 117s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 118s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 118s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 118s invoke-rc.d: policy-rc.d denied execution of try-restart. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s linux-generic is already the newest version (6.8.0-11.11+1). 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 119s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 119s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 121s Reading package lists... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s Calculating upgrade... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s autopkgtest [15:51:34]: rebooting testbed after setup commands that affected boot 277s autopkgtest [15:54:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 280s autopkgtest [15:54:12]: @@@@@@@@@@@@@@@@@@@@ apt-source snpomatic 281s Get:1 http://ftpmaster.internal/ubuntu noble/universe snpomatic 1.0-7 (dsc) [1990 B] 281s Get:2 http://ftpmaster.internal/ubuntu noble/universe snpomatic 1.0-7 (tar) [66.5 kB] 281s Get:3 http://ftpmaster.internal/ubuntu noble/universe snpomatic 1.0-7 (diff) [9876 B] 282s gpgv: Signature made Sat Dec 23 08:22:17 2023 UTC 282s gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 282s gpgv: Can't check signature: No public key 282s dpkg-source: warning: cannot verify inline signature for ./snpomatic_1.0-7.dsc: no acceptable signature found 282s autopkgtest [15:54:14]: testing package snpomatic version 1.0-7 282s autopkgtest [15:54:14]: build not needed 282s autopkgtest [15:54:14]: test test-example: preparing testbed 289s Reading package lists... 289s Building dependency tree... 289s Reading state information... 290s Starting pkgProblemResolver with broken count: 0 290s Starting 2 pkgProblemResolver with broken count: 0 290s Done 290s The following additional packages will be installed: 290s libdeflate0 libhts3 libhtscodecs2 samtools snpomatic 290s Suggested packages: 290s cwltool 290s The following NEW packages will be installed: 290s autopkgtest-satdep libdeflate0 libhts3 libhtscodecs2 samtools snpomatic 290s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 290s Need to get 1481 kB/1482 kB of archives. 290s After this operation, 4181 kB of additional disk space will be used. 290s Get:1 /tmp/autopkgtest.rcPLK5/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 290s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 290s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 290s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 290s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools ppc64el 1.19.2-1 [669 kB] 290s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el snpomatic ppc64el 1.0-7 [88.0 kB] 291s Fetched 1481 kB in 1s (2426 kB/s) 291s Selecting previously unselected package libdeflate0:ppc64el. 291s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 291s Preparing to unpack .../0-libdeflate0_1.19-1_ppc64el.deb ... 291s Unpacking libdeflate0:ppc64el (1.19-1) ... 291s Selecting previously unselected package libhtscodecs2:ppc64el. 291s Preparing to unpack .../1-libhtscodecs2_1.6.0-1_ppc64el.deb ... 291s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 291s Selecting previously unselected package libhts3:ppc64el. 291s Preparing to unpack .../2-libhts3_1.18+ds-1_ppc64el.deb ... 291s Unpacking libhts3:ppc64el (1.18+ds-1) ... 291s Selecting previously unselected package samtools. 291s Preparing to unpack .../3-samtools_1.19.2-1_ppc64el.deb ... 291s Unpacking samtools (1.19.2-1) ... 291s Selecting previously unselected package snpomatic. 291s Preparing to unpack .../4-snpomatic_1.0-7_ppc64el.deb ... 291s Unpacking snpomatic (1.0-7) ... 291s Selecting previously unselected package autopkgtest-satdep. 291s Preparing to unpack .../5-1-autopkgtest-satdep.deb ... 291s Unpacking autopkgtest-satdep (0) ... 291s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 291s Setting up libdeflate0:ppc64el (1.19-1) ... 291s Setting up snpomatic (1.0-7) ... 291s Setting up libhts3:ppc64el (1.18+ds-1) ... 291s Setting up samtools (1.19.2-1) ... 291s Setting up autopkgtest-satdep (0) ... 291s Processing triggers for man-db (2.12.0-3) ... 292s Processing triggers for libc-bin (2.39-0ubuntu6) ... 293s (Reading database ... 69830 files and directories currently installed.) 293s Removing autopkgtest-satdep (0) ... 294s autopkgtest [15:54:26]: test test-example: [----------------------- 294s [wgsim] seed = 42 294s [wgsim_core] calculating the total length of the reference sequence... 294s [wgsim_core] 1 sequences, total length: 11940 294s ref 134 C Y + 294s ref 137 G C - 294s ref 213 A R + 294s ref 276 - A + 294s ref 320 T W + 294s ref 469 A C - 294s ref 631 G T - 294s ref 678 - TTT - 294s ref 682 G K + 294s ref 796 GA - - 294s ref 974 C G - 294s ref 1056 A R + 294s ref 1156 A G - 294s ref 1170 G S + 294s ref 1298 C M + 294s ref 1326 G K + 294s ref 1343 T A - 294s ref 1422 G - - 294s ref 1639 T Y + 294s ref 1722 T G - 294s ref 2008 C M + 294s ref 2060 T K + 294s ref 2103 - G + 294s ref 2179 C M + 294s ref 2322 A M + 294s ref 2328 A W + 294s ref 2381 A T - 294s ref 2560 C Y + 294s ref 2618 G C - 294s ref 2833 - CG - 294s ref 2944 G K + 294s ref 2978 T C - 294s ref 2984 G R + 294s ref 2988 C M + 294s ref 3017 C S + 294s ref 3038 G C - 294s ref 3358 G S + 294s ref 3443 G A - 294s ref 3558 G R + 294s ref 3559 A R + 294s ref 3765 G R + 294s ref 3863 C M + 294s ref 4101 G T - 294s ref 4271 G S + 294s ref 4475 G K + 294s ref 4690 G S + 294s ref 4730 G C - 294s ref 4735 G K + 294s ref 4917 C G - 294s ref 4983 A G - 294s ref 5178 A R + 294s ref 5307 T G - 294s ref 5365 ACA - - 294s ref 5403 G S + 294s ref 5411 T C - 294s ref 5434 C S + 294s ref 5465 G - - 294s ref 5507 T Y + 294s ref 5544 A R + 294s ref 5588 - T - 294s ref 5702 A M + 294s ref 6146 T K + 294s ref 6158 G A - 294s ref 6181 G A - 294s ref 6207 A W + 294s ref 6216 T A - 294s ref 6286 T K + 294s ref 6346 GC - - 294s ref 6697 G S + 294s ref 6745 C S + 294s ref 6754 T C - 294s ref 6818 G R + 294s ref 6922 C T - 294s ref 7123 C A - 294s ref 7644 C Y + 294s ref 7699 T Y + 294s ref 7793 C T - 294s ref 7861 C T - 294s ref 7877 G C - 294s ref 7970 T G - 294s ref 7973 A G - 294s ref 8068 T W + 294s ref 8157 G C - 294s ref 8164 G R + 294s ref 8442 G K + 294s ref 8483 A R + 294s ref 8498 C Y + 294s ref 8532 A M + 294s ref 8721 C Y + 294s ref 9084 G - - 294s ref 9192 G T - 294s ref 9208 C A - 294s ref 9211 G S + 294s ref 9341 C Y + 294s ref 9372 T K + 294s ref 9393 - C + 294s ref 9597 A C - 294s ref 9621 AC - - 294s ref 9739 C A - 294s ref 9790 CATC - - 294s ref 9881 A C - 294s ref 9902 A G - 294s ref 10134 T G - 294s ref 10212 G C - 294s ref 10214 G K + 294s ref 10556 - TA - 294s ref 10751 T W + 294s ref 10777 C S + 294s ref 10799 C Y + 294s ref 10832 C S + 294s ref 10858 A G - 294s ref 11015 C Y + 294s ref 11038 C Y + 294s ref 11108 C Y + 294s ref 11179 A M + 294s ref 11217 G R + 294s ref 11275 C M + 294s ref 11290 C S + 294s ref 11481 G - - 294s ref 11566 T G - 294s ref 11655 A G - 294s ref 11771 G T - 294s Reading all chromosomes from ref.fasta ... read 1 chromosomes. 294s Indexing 1 chromosomes ... sorting ... done. 294s Setting read length to 70 294s Reading solexa pair data from reads.1.fq ... scanned 10000 solexa reads, 222 (2.22%) matched , 222 total matches, 0 skipped. 295s autopkgtest [15:54:27]: test test-example: -----------------------] 295s autopkgtest [15:54:27]: test test-example: - - - - - - - - - - results - - - - - - - - - - 295s test-example PASS 296s autopkgtest [15:54:28]: @@@@@@@@@@@@@@@@@@@@ summary 296s test-example PASS 310s Creating nova instance adt-noble-ppc64el-snpomatic-20240323-154932-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240321.img (UUID 024d6af5-fcba-4a84-85f9-01f41e1878d6)...