0s autopkgtest [02:33:47]: starting date and time: 2024-04-19 02:33:47+0000 0s autopkgtest [02:33:47]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [02:33:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.yb7pwo5t/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:nodejs --apt-upgrade seqan-raptor --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=nodejs/18.19.1+dfsg-6ubuntu5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-16.secgroup --name adt-noble-ppc64el-seqan-raptor-20240419-023347-juju-7f2275-prod-proposed-migration-environment-2-fcbb38fd-7971-4dfa-9d76-becc8a0f7aba --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 173s autopkgtest [02:36:40]: testbed dpkg architecture: ppc64el 174s autopkgtest [02:36:41]: testbed apt version: 2.7.14build2 174s autopkgtest [02:36:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 175s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 175s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.3 kB] 175s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B] 175s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [326 kB] 175s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [54.4 kB] 175s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [95.5 kB] 175s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 175s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [976 B] 175s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 175s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [433 kB] 175s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 175s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [1004 B] 175s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 177s Fetched 1054 kB in 1s (1181 kB/s) 177s Reading package lists... 179s sh: 4: dhclient: not found 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 181s Calculating upgrade... 181s The following packages will be upgraded: 181s apport apport-core-dump-handler initramfs-tools initramfs-tools-bin 181s initramfs-tools-core libnetplan1 libnuma1 libunwind8 make man-db 181s netcat-openbsd netplan-generator netplan.io numactl python3-apport 181s python3-netplan python3-problem-report 181s 17 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 181s Need to get 2255 kB of archives. 181s After this operation, 19.5 kB disk space will be freed. 181s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-problem-report all 2.28.1-0ubuntu1 [23.8 kB] 181s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-apport all 2.28.1-0ubuntu1 [92.1 kB] 181s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el apport-core-dump-handler all 2.28.1-0ubuntu1 [16.8 kB] 181s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el apport all 2.28.1-0ubuntu1 [83.5 kB] 181s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el netplan-generator ppc64el 1.0-2ubuntu1 [59.3 kB] 181s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-netplan ppc64el 1.0-2ubuntu1 [21.8 kB] 181s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el initramfs-tools all 0.142ubuntu25 [9054 B] 181s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el initramfs-tools-core all 0.142ubuntu25 [50.1 kB] 181s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el initramfs-tools-bin ppc64el 0.142ubuntu25 [21.1 kB] 181s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el netplan.io ppc64el 1.0-2ubuntu1 [66.6 kB] 181s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libnetplan1 ppc64el 1.0-2ubuntu1 [138 kB] 181s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el netcat-openbsd ppc64el 1.226-1ubuntu2 [46.2 kB] 181s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libnuma1 ppc64el 2.0.18-1build1 [28.2 kB] 181s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el man-db ppc64el 2.12.0-4build2 [1281 kB] 182s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libunwind8 ppc64el 1.6.2-3build1 [60.1 kB] 182s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el make ppc64el 4.3-4.1build2 [214 kB] 182s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el numactl ppc64el 2.0.18-1build1 [43.9 kB] 182s Preconfiguring packages ... 182s Fetched 2255 kB in 1s (2866 kB/s) 182s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 182s Preparing to unpack .../00-python3-problem-report_2.28.1-0ubuntu1_all.deb ... 182s Unpacking python3-problem-report (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 182s Preparing to unpack .../01-python3-apport_2.28.1-0ubuntu1_all.deb ... 182s Unpacking python3-apport (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 182s Preparing to unpack .../02-apport-core-dump-handler_2.28.1-0ubuntu1_all.deb ... 182s Unpacking apport-core-dump-handler (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 182s Preparing to unpack .../03-apport_2.28.1-0ubuntu1_all.deb ... 182s Unpacking apport (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 182s Preparing to unpack .../04-netplan-generator_1.0-2ubuntu1_ppc64el.deb ... 182s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 182s Unpacking netplan-generator (1.0-2ubuntu1) over (1.0-2build1) ... 182s Preparing to unpack .../05-python3-netplan_1.0-2ubuntu1_ppc64el.deb ... 182s Unpacking python3-netplan (1.0-2ubuntu1) over (1.0-2build1) ... 182s Preparing to unpack .../06-initramfs-tools_0.142ubuntu25_all.deb ... 183s Unpacking initramfs-tools (0.142ubuntu25) over (0.142ubuntu24) ... 183s Preparing to unpack .../07-initramfs-tools-core_0.142ubuntu25_all.deb ... 183s Unpacking initramfs-tools-core (0.142ubuntu25) over (0.142ubuntu24) ... 183s Preparing to unpack .../08-initramfs-tools-bin_0.142ubuntu25_ppc64el.deb ... 183s Unpacking initramfs-tools-bin (0.142ubuntu25) over (0.142ubuntu24) ... 183s Preparing to unpack .../09-netplan.io_1.0-2ubuntu1_ppc64el.deb ... 183s Unpacking netplan.io (1.0-2ubuntu1) over (1.0-2build1) ... 183s Preparing to unpack .../10-libnetplan1_1.0-2ubuntu1_ppc64el.deb ... 183s Unpacking libnetplan1:ppc64el (1.0-2ubuntu1) over (1.0-2build1) ... 183s Preparing to unpack .../11-netcat-openbsd_1.226-1ubuntu2_ppc64el.deb ... 183s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ... 183s Preparing to unpack .../12-libnuma1_2.0.18-1build1_ppc64el.deb ... 183s Unpacking libnuma1:ppc64el (2.0.18-1build1) over (2.0.18-1) ... 183s Preparing to unpack .../13-man-db_2.12.0-4build2_ppc64el.deb ... 183s Unpacking man-db (2.12.0-4build2) over (2.12.0-4build1) ... 183s Preparing to unpack .../14-libunwind8_1.6.2-3build1_ppc64el.deb ... 183s Unpacking libunwind8:ppc64el (1.6.2-3build1) over (1.6.2-3) ... 183s Preparing to unpack .../15-make_4.3-4.1build2_ppc64el.deb ... 183s Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ... 183s Preparing to unpack .../16-numactl_2.0.18-1build1_ppc64el.deb ... 183s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ... 183s Setting up python3-problem-report (2.28.1-0ubuntu1) ... 183s Setting up netcat-openbsd (1.226-1ubuntu2) ... 183s Setting up libnetplan1:ppc64el (1.0-2ubuntu1) ... 183s Setting up man-db (2.12.0-4build2) ... 183s Updating database of manual pages ... 185s man-db.service is a disabled or a static unit not running, not starting it. 185s Setting up libunwind8:ppc64el (1.6.2-3build1) ... 185s Setting up python3-apport (2.28.1-0ubuntu1) ... 186s Setting up make (4.3-4.1build2) ... 186s Setting up libnuma1:ppc64el (2.0.18-1build1) ... 186s Setting up python3-netplan (1.0-2ubuntu1) ... 186s Setting up netplan-generator (1.0-2ubuntu1) ... 186s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 186s Setting up initramfs-tools-bin (0.142ubuntu25) ... 186s Setting up numactl (2.0.18-1build1) ... 186s Setting up netplan.io (1.0-2ubuntu1) ... 186s Setting up initramfs-tools-core (0.142ubuntu25) ... 186s Setting up initramfs-tools (0.142ubuntu25) ... 186s update-initramfs: deferring update (trigger activated) 186s Setting up apport-core-dump-handler (2.28.1-0ubuntu1) ... 187s Setting up apport (2.28.1-0ubuntu1) ... 187s Installing new version of config file /etc/apport/crashdb.conf ... 188s apport-autoreport.service is a disabled or a static unit not running, not starting it. 188s Processing triggers for dbus (1.14.10-4ubuntu4) ... 188s Processing triggers for libc-bin (2.39-0ubuntu8) ... 188s Processing triggers for initramfs-tools (0.142ubuntu25) ... 188s update-initramfs: Generating /boot/initrd.img-6.8.0-22-generic 188s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 195s Reading package lists... 195s Building dependency tree... 195s Reading state information... 196s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 196s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 196s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 196s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 196s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 197s Reading package lists... 197s Reading package lists... 197s Building dependency tree... 197s Reading state information... 197s Calculating upgrade... 198s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 198s autopkgtest [02:37:05]: rebooting testbed after setup commands that affected boot 374s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 402s autopkgtest [02:40:29]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr 4 22:47:57 UTC 2024 405s autopkgtest [02:40:32]: @@@@@@@@@@@@@@@@@@@@ apt-source seqan-raptor 407s Get:1 http://ftpmaster.internal/ubuntu noble/universe seqan-raptor 3.0.1+ds-5 (dsc) [2642 B] 407s Get:2 http://ftpmaster.internal/ubuntu noble/universe seqan-raptor 3.0.1+ds-5 (tar) [3085 kB] 407s Get:3 http://ftpmaster.internal/ubuntu noble/universe seqan-raptor 3.0.1+ds-5 (diff) [10.3 kB] 408s gpgv: Signature made Wed Sep 6 13:05:19 2023 UTC 408s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 408s gpgv: Can't check signature: No public key 408s dpkg-source: warning: cannot verify inline signature for ./seqan-raptor_3.0.1+ds-5.dsc: no acceptable signature found 408s autopkgtest [02:40:35]: testing package seqan-raptor version 3.0.1+ds-5 408s autopkgtest [02:40:35]: build not needed 410s autopkgtest [02:40:37]: test cwl: preparing testbed 411s Reading package lists... 411s Building dependency tree... 411s Reading state information... 412s Starting pkgProblemResolver with broken count: 0 412s Starting 2 pkgProblemResolver with broken count: 0 412s Done 412s The following additional packages will be installed: 412s cwl-upgrader cwltool fontconfig fonts-glyphicons-halflings graphviz libann0 412s libcairo2 libcares2 libcdt5 libcgraph6 libdatrie1 libgomp1 libgraphite2-3 412s libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libice6 libjs-bootstrap 412s liblab-gamut1 libltdl7 libnode109 libpango-1.0-0 libpangocairo-1.0-0 412s libpangoft2-1.0-0 libpathplan4 libpixman-1-0 libsm6 libthai-data libthai0 412s libxaw7 libxcb-render0 libxcb-shm0 libxmu6 libxrender1 libxslt1.1 libxt6t64 412s libyaml-cpp0.8 node-acorn node-busboy node-cjs-module-lexer node-undici 412s node-xtend nodejs python3-arcp python3-argcomplete python3-cachecontrol 412s python3-coloredlogs python3-cwl-utils python3-dateutil python3-filelock 412s python3-humanfriendly python3-isodate python3-lxml python3-mistune 412s python3-msgpack python3-mypy-extensions python3-networkx python3-packaging 412s python3-prov python3-psutil python3-pydot python3-rdflib python3-ruamel.yaml 412s python3-ruamel.yaml.clib python3-schema-salad python3-shellescape 412s python3-spython seqan-raptor seqan-raptor-doc x11-common 412s Suggested packages: 412s podman | docker.io | singularity-container gsfonts graphviz-doc npm 412s cwl-utils python-lxml-doc python-networkx-doc python3-gdal 412s python3-matplotlib python3-pygraphviz python3-scipy python-prov-doc 412s python-rdflib-doc singularity-container 412s Recommended packages: 412s fonts-liberation2 libgts-bin nodejs-doc python3-bs4 python3-cssselect 412s python3-html5lib python3-numpy python3-sparqlwrapper black 412s The following NEW packages will be installed: 412s autopkgtest-satdep cwl-upgrader cwltool fontconfig 412s fonts-glyphicons-halflings graphviz libann0 libcairo2 libcares2 libcdt5 412s libcgraph6 libdatrie1 libgomp1 libgraphite2-3 libgts-0.7-5t64 libgvc6 412s libgvpr2 libharfbuzz0b libice6 libjs-bootstrap liblab-gamut1 libltdl7 412s libnode109 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 412s libpixman-1-0 libsm6 libthai-data libthai0 libxaw7 libxcb-render0 412s libxcb-shm0 libxmu6 libxrender1 libxslt1.1 libxt6t64 libyaml-cpp0.8 412s node-acorn node-busboy node-cjs-module-lexer node-undici node-xtend nodejs 412s python3-arcp python3-argcomplete python3-cachecontrol python3-coloredlogs 412s python3-cwl-utils python3-dateutil python3-filelock python3-humanfriendly 412s python3-isodate python3-lxml python3-mistune python3-msgpack 412s python3-mypy-extensions python3-networkx python3-packaging python3-prov 412s python3-psutil python3-pydot python3-rdflib python3-ruamel.yaml 412s python3-ruamel.yaml.clib python3-schema-salad python3-shellescape 412s python3-spython seqan-raptor seqan-raptor-doc x11-common 412s 0 upgraded, 72 newly installed, 0 to remove and 0 not upgraded. 412s Need to get 28.9 MB/28.9 MB of archives. 412s After this operation, 140 MB of additional disk space will be used. 412s Get:1 /tmp/autopkgtest.zDqAb5/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [744 B] 412s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ruamel.yaml.clib ppc64el 0.2.8-1build1 [159 kB] 412s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ruamel.yaml all 0.17.21-1 [86.6 kB] 412s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-msgpack ppc64el 1.0.3-3build2 [86.9 kB] 413s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cachecontrol all 0.14.0-1 [19.0 kB] 413s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mistune all 3.0.2-1 [32.8 kB] 413s Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mypy-extensions all 1.0.0-1 [6148 B] 413s Get:8 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-isodate all 0.6.1-2 [24.3 kB] 413s Get:9 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-rdflib all 6.1.1-3 [362 kB] 413s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-filelock all 3.13.1-1 [10.8 kB] 413s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 413s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 413s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-schema-salad ppc64el 8.5.20240102191335-1build1 [996 kB] 413s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el cwl-upgrader all 1.2.11-1 [16.0 kB] 413s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-argcomplete all 3.1.4-1 [33.5 kB] 413s Get:16 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-humanfriendly all 10.0-4 [70.5 kB] 413s Get:17 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-coloredlogs all 15.0.1-1 [38.2 kB] 413s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 24.0-1 [41.1 kB] 413s Get:19 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cwl-utils all 0.32-1 [118 kB] 413s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3ubuntu1 [79.4 kB] 413s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1build1 [192 kB] 413s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-lxml ppc64el 5.2.1-1 [1250 kB] 414s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-networkx all 2.8.8-1ubuntu1 [1468 kB] 414s Get:24 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-prov all 2.0.0-2 [96.3 kB] 414s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-psutil ppc64el 5.9.8-2build2 [197 kB] 414s Get:26 http://ftpmaster.internal/ubuntu noble/universe ppc64el libann0 ppc64el 1.1.2+doc-9 [30.0 kB] 414s Get:27 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcdt5 ppc64el 2.42.2-9build1 [27.4 kB] 414s Get:28 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcgraph6 ppc64el 2.42.2-9build1 [54.4 kB] 414s Get:29 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgts-0.7-5t64 ppc64el 0.7.6+darcs121130-5.2build1 [187 kB] 414s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1build1 [336 kB] 414s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] 414s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] 414s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 414s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-3build1 [751 kB] 414s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libltdl7 ppc64el 2.4.7-7build1 [48.2 kB] 414s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB] 414s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2build1 [84.6 kB] 414s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB] 415s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2build1 [158 kB] 415s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB] 415s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB] 415s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.52.1+ds-1build1 [271 kB] 415s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.52.1+ds-1build1 [50.5 kB] 415s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.52.1+ds-1build1 [31.1 kB] 415s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el libpathplan4 ppc64el 2.42.2-9build1 [30.2 kB] 415s Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgvc6 ppc64el 2.42.2-9build1 [920 kB] 415s Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgvpr2 ppc64el 2.42.2-9build1 [211 kB] 415s Get:48 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblab-gamut1 ppc64el 2.42.2-9build1 [1839 kB] 415s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 415s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build3 [49.1 kB] 415s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build3 [17.6 kB] 415s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB] 415s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libxmu6 ppc64el 2:1.1.3-3build2 [56.8 kB] 415s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el libxaw7 ppc64el 2:1.0.14-1build2 [231 kB] 415s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el graphviz ppc64el 2.42.2-9build1 [823 kB] 415s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pydot all 1.4.2-2 [24.4 kB] 415s Get:57 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-shellescape all 3.4.1-5 [5064 B] 415s Get:58 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-spython all 0.3.13-2 [56.2 kB] 415s Get:59 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-arcp all 0.2.1-6 [13.6 kB] 415s Get:60 http://ftpmaster.internal/ubuntu noble/universe ppc64el cwltool all 3.1.20240112164112-2 [509 kB] 415s Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libcares2 ppc64el 1.27.0-1.0ubuntu1 [99.0 kB] 415s Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240412-0ubuntu1 [161 kB] 415s Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-xtend all 4.0.2-3 [3902 B] 415s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el nodejs ppc64el 18.19.1+dfsg-6ubuntu5 [307 kB] 415s Get:65 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-acorn all 8.8.1+ds+~cs25.17.7-2 [115 kB] 415s Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-cjs-module-lexer all 1.2.3+dfsg-1 [32.1 kB] 415s Get:67 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-busboy all 1.6.0+~cs2.6.0-2 [17.3 kB] 415s Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-undici all 5.26.3+dfsg1+~cs23.10.12-2 [325 kB] 415s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libnode109 ppc64el 18.19.1+dfsg-6ubuntu5 [12.3 MB] 416s Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el libyaml-cpp0.8 ppc64el 0.8.0+dfsg-6build1 [127 kB] 416s Get:71 http://ftpmaster.internal/ubuntu noble/universe ppc64el seqan-raptor ppc64el 3.0.1+ds-5 [715 kB] 416s Get:72 http://ftpmaster.internal/ubuntu noble/universe ppc64el seqan-raptor-doc all 3.0.1+ds-5 [1247 kB] 417s Fetched 28.9 MB in 4s (6580 kB/s) 417s Selecting previously unselected package python3-ruamel.yaml.clib:ppc64el. 417s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71980 files and directories currently installed.) 417s Preparing to unpack .../00-python3-ruamel.yaml.clib_0.2.8-1build1_ppc64el.deb ... 417s Unpacking python3-ruamel.yaml.clib:ppc64el (0.2.8-1build1) ... 417s Selecting previously unselected package python3-ruamel.yaml. 417s Preparing to unpack .../01-python3-ruamel.yaml_0.17.21-1_all.deb ... 417s Unpacking python3-ruamel.yaml (0.17.21-1) ... 417s Selecting previously unselected package python3-msgpack. 417s Preparing to unpack .../02-python3-msgpack_1.0.3-3build2_ppc64el.deb ... 417s Unpacking python3-msgpack (1.0.3-3build2) ... 417s Selecting previously unselected package python3-cachecontrol. 417s Preparing to unpack .../03-python3-cachecontrol_0.14.0-1_all.deb ... 417s Unpacking python3-cachecontrol (0.14.0-1) ... 417s Selecting previously unselected package python3-mistune. 417s Preparing to unpack .../04-python3-mistune_3.0.2-1_all.deb ... 417s Unpacking python3-mistune (3.0.2-1) ... 417s Selecting previously unselected package python3-mypy-extensions. 417s Preparing to unpack .../05-python3-mypy-extensions_1.0.0-1_all.deb ... 417s Unpacking python3-mypy-extensions (1.0.0-1) ... 417s Selecting previously unselected package python3-isodate. 417s Preparing to unpack .../06-python3-isodate_0.6.1-2_all.deb ... 417s Unpacking python3-isodate (0.6.1-2) ... 417s Selecting previously unselected package python3-rdflib. 417s Preparing to unpack .../07-python3-rdflib_6.1.1-3_all.deb ... 417s Unpacking python3-rdflib (6.1.1-3) ... 417s Selecting previously unselected package python3-filelock. 417s Preparing to unpack .../08-python3-filelock_3.13.1-1_all.deb ... 417s Unpacking python3-filelock (3.13.1-1) ... 417s Selecting previously unselected package fonts-glyphicons-halflings. 417s Preparing to unpack .../09-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 417s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 417s Selecting previously unselected package libjs-bootstrap. 417s Preparing to unpack .../10-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 417s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 417s Selecting previously unselected package python3-schema-salad. 417s Preparing to unpack .../11-python3-schema-salad_8.5.20240102191335-1build1_ppc64el.deb ... 417s Unpacking python3-schema-salad (8.5.20240102191335-1build1) ... 417s Selecting previously unselected package cwl-upgrader. 417s Preparing to unpack .../12-cwl-upgrader_1.2.11-1_all.deb ... 417s Unpacking cwl-upgrader (1.2.11-1) ... 417s Selecting previously unselected package python3-argcomplete. 417s Preparing to unpack .../13-python3-argcomplete_3.1.4-1_all.deb ... 417s Unpacking python3-argcomplete (3.1.4-1) ... 417s Selecting previously unselected package python3-humanfriendly. 417s Preparing to unpack .../14-python3-humanfriendly_10.0-4_all.deb ... 417s Unpacking python3-humanfriendly (10.0-4) ... 417s Selecting previously unselected package python3-coloredlogs. 417s Preparing to unpack .../15-python3-coloredlogs_15.0.1-1_all.deb ... 417s Unpacking python3-coloredlogs (15.0.1-1) ... 417s Selecting previously unselected package python3-packaging. 417s Preparing to unpack .../16-python3-packaging_24.0-1_all.deb ... 417s Unpacking python3-packaging (24.0-1) ... 417s Selecting previously unselected package python3-cwl-utils. 417s Preparing to unpack .../17-python3-cwl-utils_0.32-1_all.deb ... 417s Unpacking python3-cwl-utils (0.32-1) ... 417s Selecting previously unselected package python3-dateutil. 417s Preparing to unpack .../18-python3-dateutil_2.8.2-3ubuntu1_all.deb ... 417s Unpacking python3-dateutil (2.8.2-3ubuntu1) ... 417s Selecting previously unselected package libxslt1.1:ppc64el. 417s Preparing to unpack .../19-libxslt1.1_1.1.39-0exp1build1_ppc64el.deb ... 417s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1build1) ... 417s Selecting previously unselected package python3-lxml:ppc64el. 417s Preparing to unpack .../20-python3-lxml_5.2.1-1_ppc64el.deb ... 417s Unpacking python3-lxml:ppc64el (5.2.1-1) ... 417s Selecting previously unselected package python3-networkx. 417s Preparing to unpack .../21-python3-networkx_2.8.8-1ubuntu1_all.deb ... 417s Unpacking python3-networkx (2.8.8-1ubuntu1) ... 418s Selecting previously unselected package python3-prov. 418s Preparing to unpack .../22-python3-prov_2.0.0-2_all.deb ... 418s Unpacking python3-prov (2.0.0-2) ... 418s Selecting previously unselected package python3-psutil. 418s Preparing to unpack .../23-python3-psutil_5.9.8-2build2_ppc64el.deb ... 418s Unpacking python3-psutil (5.9.8-2build2) ... 418s Selecting previously unselected package libann0. 418s Preparing to unpack .../24-libann0_1.1.2+doc-9_ppc64el.deb ... 418s Unpacking libann0 (1.1.2+doc-9) ... 418s Selecting previously unselected package libcdt5:ppc64el. 418s Preparing to unpack .../25-libcdt5_2.42.2-9build1_ppc64el.deb ... 418s Unpacking libcdt5:ppc64el (2.42.2-9build1) ... 418s Selecting previously unselected package libcgraph6:ppc64el. 418s Preparing to unpack .../26-libcgraph6_2.42.2-9build1_ppc64el.deb ... 418s Unpacking libcgraph6:ppc64el (2.42.2-9build1) ... 418s Selecting previously unselected package libgts-0.7-5t64:ppc64el. 418s Preparing to unpack .../27-libgts-0.7-5t64_0.7.6+darcs121130-5.2build1_ppc64el.deb ... 418s Unpacking libgts-0.7-5t64:ppc64el (0.7.6+darcs121130-5.2build1) ... 418s Selecting previously unselected package libpixman-1-0:ppc64el. 418s Preparing to unpack .../28-libpixman-1-0_0.42.2-1build1_ppc64el.deb ... 418s Unpacking libpixman-1-0:ppc64el (0.42.2-1build1) ... 418s Selecting previously unselected package libxcb-render0:ppc64el. 418s Preparing to unpack .../29-libxcb-render0_1.15-1_ppc64el.deb ... 418s Unpacking libxcb-render0:ppc64el (1.15-1) ... 418s Selecting previously unselected package libxcb-shm0:ppc64el. 418s Preparing to unpack .../30-libxcb-shm0_1.15-1_ppc64el.deb ... 418s Unpacking libxcb-shm0:ppc64el (1.15-1) ... 418s Selecting previously unselected package libxrender1:ppc64el. 418s Preparing to unpack .../31-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 418s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 418s Selecting previously unselected package libcairo2:ppc64el. 418s Preparing to unpack .../32-libcairo2_1.18.0-3build1_ppc64el.deb ... 418s Unpacking libcairo2:ppc64el (1.18.0-3build1) ... 418s Selecting previously unselected package libltdl7:ppc64el. 418s Preparing to unpack .../33-libltdl7_2.4.7-7build1_ppc64el.deb ... 418s Unpacking libltdl7:ppc64el (2.4.7-7build1) ... 418s Selecting previously unselected package fontconfig. 418s Preparing to unpack .../34-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ... 418s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 418s Selecting previously unselected package libgraphite2-3:ppc64el. 418s Preparing to unpack .../35-libgraphite2-3_1.3.14-2build1_ppc64el.deb ... 418s Unpacking libgraphite2-3:ppc64el (1.3.14-2build1) ... 418s Selecting previously unselected package libharfbuzz0b:ppc64el. 418s Preparing to unpack .../36-libharfbuzz0b_8.3.0-2build2_ppc64el.deb ... 418s Unpacking libharfbuzz0b:ppc64el (8.3.0-2build2) ... 418s Selecting previously unselected package libthai-data. 418s Preparing to unpack .../37-libthai-data_0.1.29-2build1_all.deb ... 418s Unpacking libthai-data (0.1.29-2build1) ... 418s Selecting previously unselected package libdatrie1:ppc64el. 418s Preparing to unpack .../38-libdatrie1_0.2.13-3build1_ppc64el.deb ... 418s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ... 418s Selecting previously unselected package libthai0:ppc64el. 418s Preparing to unpack .../39-libthai0_0.1.29-2build1_ppc64el.deb ... 418s Unpacking libthai0:ppc64el (0.1.29-2build1) ... 418s Selecting previously unselected package libpango-1.0-0:ppc64el. 418s Preparing to unpack .../40-libpango-1.0-0_1.52.1+ds-1build1_ppc64el.deb ... 418s Unpacking libpango-1.0-0:ppc64el (1.52.1+ds-1build1) ... 418s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 418s Preparing to unpack .../41-libpangoft2-1.0-0_1.52.1+ds-1build1_ppc64el.deb ... 418s Unpacking libpangoft2-1.0-0:ppc64el (1.52.1+ds-1build1) ... 418s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 418s Preparing to unpack .../42-libpangocairo-1.0-0_1.52.1+ds-1build1_ppc64el.deb ... 418s Unpacking libpangocairo-1.0-0:ppc64el (1.52.1+ds-1build1) ... 418s Selecting previously unselected package libpathplan4:ppc64el. 418s Preparing to unpack .../43-libpathplan4_2.42.2-9build1_ppc64el.deb ... 418s Unpacking libpathplan4:ppc64el (2.42.2-9build1) ... 418s Selecting previously unselected package libgvc6. 418s Preparing to unpack .../44-libgvc6_2.42.2-9build1_ppc64el.deb ... 418s Unpacking libgvc6 (2.42.2-9build1) ... 418s Selecting previously unselected package libgvpr2:ppc64el. 418s Preparing to unpack .../45-libgvpr2_2.42.2-9build1_ppc64el.deb ... 418s Unpacking libgvpr2:ppc64el (2.42.2-9build1) ... 418s Selecting previously unselected package liblab-gamut1:ppc64el. 418s Preparing to unpack .../46-liblab-gamut1_2.42.2-9build1_ppc64el.deb ... 418s Unpacking liblab-gamut1:ppc64el (2.42.2-9build1) ... 418s Selecting previously unselected package x11-common. 418s Preparing to unpack .../47-x11-common_1%3a7.7+23ubuntu3_all.deb ... 418s Unpacking x11-common (1:7.7+23ubuntu3) ... 418s Selecting previously unselected package libice6:ppc64el. 418s Preparing to unpack .../48-libice6_2%3a1.0.10-1build3_ppc64el.deb ... 418s Unpacking libice6:ppc64el (2:1.0.10-1build3) ... 418s Selecting previously unselected package libsm6:ppc64el. 418s Preparing to unpack .../49-libsm6_2%3a1.2.3-1build3_ppc64el.deb ... 418s Unpacking libsm6:ppc64el (2:1.2.3-1build3) ... 418s Selecting previously unselected package libxt6t64:ppc64el. 418s Preparing to unpack .../50-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ... 418s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 418s Selecting previously unselected package libxmu6:ppc64el. 418s Preparing to unpack .../51-libxmu6_2%3a1.1.3-3build2_ppc64el.deb ... 418s Unpacking libxmu6:ppc64el (2:1.1.3-3build2) ... 418s Selecting previously unselected package libxaw7:ppc64el. 418s Preparing to unpack .../52-libxaw7_2%3a1.0.14-1build2_ppc64el.deb ... 418s Unpacking libxaw7:ppc64el (2:1.0.14-1build2) ... 418s Selecting previously unselected package graphviz. 418s Preparing to unpack .../53-graphviz_2.42.2-9build1_ppc64el.deb ... 418s Unpacking graphviz (2.42.2-9build1) ... 418s Selecting previously unselected package python3-pydot. 418s Preparing to unpack .../54-python3-pydot_1.4.2-2_all.deb ... 418s Unpacking python3-pydot (1.4.2-2) ... 418s Selecting previously unselected package python3-shellescape. 418s Preparing to unpack .../55-python3-shellescape_3.4.1-5_all.deb ... 418s Unpacking python3-shellescape (3.4.1-5) ... 418s Selecting previously unselected package python3-spython. 418s Preparing to unpack .../56-python3-spython_0.3.13-2_all.deb ... 418s Unpacking python3-spython (0.3.13-2) ... 418s Selecting previously unselected package python3-arcp. 418s Preparing to unpack .../57-python3-arcp_0.2.1-6_all.deb ... 418s Unpacking python3-arcp (0.2.1-6) ... 418s Selecting previously unselected package cwltool. 418s Preparing to unpack .../58-cwltool_3.1.20240112164112-2_all.deb ... 418s Unpacking cwltool (3.1.20240112164112-2) ... 419s Selecting previously unselected package libcares2:ppc64el. 419s Preparing to unpack .../59-libcares2_1.27.0-1.0ubuntu1_ppc64el.deb ... 419s Unpacking libcares2:ppc64el (1.27.0-1.0ubuntu1) ... 419s Selecting previously unselected package libgomp1:ppc64el. 419s Preparing to unpack .../60-libgomp1_14-20240412-0ubuntu1_ppc64el.deb ... 419s Unpacking libgomp1:ppc64el (14-20240412-0ubuntu1) ... 419s Selecting previously unselected package node-xtend. 419s Preparing to unpack .../61-node-xtend_4.0.2-3_all.deb ... 419s Unpacking node-xtend (4.0.2-3) ... 419s Selecting previously unselected package nodejs. 419s Preparing to unpack .../62-nodejs_18.19.1+dfsg-6ubuntu5_ppc64el.deb ... 419s Unpacking nodejs (18.19.1+dfsg-6ubuntu5) ... 419s Selecting previously unselected package node-acorn. 419s Preparing to unpack .../63-node-acorn_8.8.1+ds+~cs25.17.7-2_all.deb ... 419s Unpacking node-acorn (8.8.1+ds+~cs25.17.7-2) ... 419s Selecting previously unselected package node-cjs-module-lexer. 419s Preparing to unpack .../64-node-cjs-module-lexer_1.2.3+dfsg-1_all.deb ... 419s Unpacking node-cjs-module-lexer (1.2.3+dfsg-1) ... 419s Selecting previously unselected package node-busboy. 419s Preparing to unpack .../65-node-busboy_1.6.0+~cs2.6.0-2_all.deb ... 419s Unpacking node-busboy (1.6.0+~cs2.6.0-2) ... 419s Selecting previously unselected package node-undici. 419s Preparing to unpack .../66-node-undici_5.26.3+dfsg1+~cs23.10.12-2_all.deb ... 419s Unpacking node-undici (5.26.3+dfsg1+~cs23.10.12-2) ... 419s Selecting previously unselected package libnode109:ppc64el. 419s Preparing to unpack .../67-libnode109_18.19.1+dfsg-6ubuntu5_ppc64el.deb ... 419s Unpacking libnode109:ppc64el (18.19.1+dfsg-6ubuntu5) ... 419s Selecting previously unselected package libyaml-cpp0.8:ppc64el. 419s Preparing to unpack .../68-libyaml-cpp0.8_0.8.0+dfsg-6build1_ppc64el.deb ... 419s Unpacking libyaml-cpp0.8:ppc64el (0.8.0+dfsg-6build1) ... 419s Selecting previously unselected package seqan-raptor. 419s Preparing to unpack .../69-seqan-raptor_3.0.1+ds-5_ppc64el.deb ... 419s Unpacking seqan-raptor (3.0.1+ds-5) ... 419s Selecting previously unselected package seqan-raptor-doc. 419s Preparing to unpack .../70-seqan-raptor-doc_3.0.1+ds-5_all.deb ... 419s Unpacking seqan-raptor-doc (3.0.1+ds-5) ... 419s Selecting previously unselected package autopkgtest-satdep. 419s Preparing to unpack .../71-1-autopkgtest-satdep.deb ... 419s Unpacking autopkgtest-satdep (0) ... 419s Setting up libgraphite2-3:ppc64el (1.3.14-2build1) ... 419s Setting up python3-arcp (0.2.1-6) ... 419s Setting up libpixman-1-0:ppc64el (0.42.2-1build1) ... 419s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 421s Regenerating fonts cache... done. 421s Setting up python3-filelock (3.13.1-1) ... 421s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 421s Setting up libdatrie1:ppc64el (0.2.13-3build1) ... 421s Setting up libxcb-render0:ppc64el (1.15-1) ... 421s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 421s Setting up python3-mypy-extensions (1.0.0-1) ... 422s Setting up libyaml-cpp0.8:ppc64el (0.8.0+dfsg-6build1) ... 422s Setting up liblab-gamut1:ppc64el (2.42.2-9build1) ... 422s Setting up python3-ruamel.yaml.clib:ppc64el (0.2.8-1build1) ... 422s Setting up x11-common (1:7.7+23ubuntu3) ... 422s Setting up node-cjs-module-lexer (1.2.3+dfsg-1) ... 422s Setting up libxcb-shm0:ppc64el (1.15-1) ... 422s Setting up libgomp1:ppc64el (14-20240412-0ubuntu1) ... 422s Setting up python3-networkx (2.8.8-1ubuntu1) ... 423s /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' 423s "graph [edge [ source u'u\4200' target u'u\4200' ] " 423s /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' 423s + "node [ id u'u\4200' label b ] ]" 423s Setting up libcairo2:ppc64el (1.18.0-3build1) ... 423s Setting up python3-psutil (5.9.8-2build2) ... 424s Setting up python3-isodate (0.6.1-2) ... 424s Setting up python3-packaging (24.0-1) ... 424s Setting up python3-humanfriendly (10.0-4) ... 424s Setting up python3-spython (0.3.13-2) ... 424s Setting up libpathplan4:ppc64el (2.42.2-9build1) ... 424s Setting up libann0 (1.1.2+doc-9) ... 424s Setting up libcares2:ppc64el (1.27.0-1.0ubuntu1) ... 424s Setting up libltdl7:ppc64el (2.4.7-7build1) ... 424s Setting up python3-ruamel.yaml (0.17.21-1) ... 425s Setting up python3-rdflib (6.1.1-3) ... 425s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:75: SyntaxWarning: invalid escape sequence '\*' 425s """Converts the given graph into a networkx.MultiDiGraph. 425s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:132: SyntaxWarning: invalid escape sequence '\*' 425s """Converts the given graph into a networkx.DiGraph. 425s /usr/lib/python3/dist-packages/rdflib/extras/external_graph_libs.py:195: SyntaxWarning: invalid escape sequence '\*' 425s """Converts the given graph into a networkx.Graph. 425s Setting up libxslt1.1:ppc64el (1.1.39-0exp1build1) ... 425s Setting up libharfbuzz0b:ppc64el (8.3.0-2build2) ... 425s Setting up libthai-data (0.1.29-2build1) ... 425s Setting up python3-dateutil (2.8.2-3ubuntu1) ... 425s Setting up libgts-0.7-5t64:ppc64el (0.7.6+darcs121130-5.2build1) ... 425s Setting up python3-msgpack (1.0.3-3build2) ... 425s Setting up libcdt5:ppc64el (2.42.2-9build1) ... 425s Setting up libcgraph6:ppc64el (2.42.2-9build1) ... 425s Setting up python3-cachecontrol (0.14.0-1) ... 425s Setting up python3-shellescape (3.4.1-5) ... 426s Setting up node-xtend (4.0.2-3) ... 426s Setting up seqan-raptor (3.0.1+ds-5) ... 426s Setting up python3-argcomplete (3.1.4-1) ... 426s Setting up python3-coloredlogs (15.0.1-1) ... 426s Setting up seqan-raptor-doc (3.0.1+ds-5) ... 426s Setting up python3-mistune (3.0.2-1) ... 426s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 426s Setting up node-busboy (1.6.0+~cs2.6.0-2) ... 426s Setting up libice6:ppc64el (2:1.0.10-1build3) ... 426s Setting up python3-schema-salad (8.5.20240102191335-1build1) ... 426s Setting up libthai0:ppc64el (0.1.29-2build1) ... 426s Setting up cwl-upgrader (1.2.11-1) ... 426s Setting up libgvpr2:ppc64el (2.42.2-9build1) ... 426s Setting up node-undici (5.26.3+dfsg1+~cs23.10.12-2) ... 426s Setting up python3-lxml:ppc64el (5.2.1-1) ... 427s Setting up libsm6:ppc64el (2:1.2.3-1build3) ... 427s Setting up libpango-1.0-0:ppc64el (1.52.1+ds-1build1) ... 427s Setting up python3-cwl-utils (0.32-1) ... 428s Setting up python3-prov (2.0.0-2) ... 428s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 428s Setting up libpangoft2-1.0-0:ppc64el (1.52.1+ds-1build1) ... 428s Setting up libpangocairo-1.0-0:ppc64el (1.52.1+ds-1build1) ... 428s Setting up libxmu6:ppc64el (2:1.1.3-3build2) ... 428s Setting up libxaw7:ppc64el (2:1.0.14-1build2) ... 428s Setting up libgvc6 (2.42.2-9build1) ... 428s Setting up graphviz (2.42.2-9build1) ... 428s Setting up python3-pydot (1.4.2-2) ... 428s Setting up cwltool (3.1.20240112164112-2) ... 428s Setting up libnode109:ppc64el (18.19.1+dfsg-6ubuntu5) ... 428s Setting up nodejs (18.19.1+dfsg-6ubuntu5) ... 428s update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode 428s Setting up node-acorn (8.8.1+ds+~cs25.17.7-2) ... 428s Setting up autopkgtest-satdep (0) ... 428s Processing triggers for libc-bin (2.39-0ubuntu8) ... 428s Processing triggers for man-db (2.12.0-4build2) ... 432s (Reading database ... 77718 files and directories currently installed.) 432s Removing autopkgtest-satdep (0) ... 433s autopkgtest [02:41:00]: test cwl: [----------------------- 434s INFO /usr/bin/cwltool 3.1.20240112164112 434s INFO Resolved '/usr/share/commonwl/raptor-build.cwl' to 'file:///usr/share/commonwl/raptor-build.cwl' 436s INFO [job raptor-build.cwl] /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/ooqzfrz2$ raptor \ 436s build \ 436s --input \ 436s input_bins_filepaths.txt \ 436s --output \ 436s 0_bins_window_19.index 436s ============= Timings ============= 436s Wall clock time [s]: 0.00 436s Peak memory usage [MiB]: 77.6 436s Determine IBF size [s]: 0.00 436s Index allocation [s]: 0.00 436s User bin I/O avg per thread [s]: 0.00 436s User bin I/O sum [s]: 0.00 436s Fill IBF avg per thread [s]: 0.00 436s Fill IBF sum [s]: 0.00 436s Store index [s]: 0.00 436s INFO [job raptor-build.cwl] completed success 436s INFO Final process status is success 436s "checksum": "sha1$098169f476fb949b0d08f2d1e05881049819b811", 436s INFO /usr/bin/cwltool 3.1.20240112164112 436s INFO Resolved '/usr/share/commonwl/raptor-build.cwl' to 'file:///usr/share/commonwl/raptor-build.cwl' 438s INFO [job raptor-build.cwl] /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/3mhessx2$ raptor \ 438s build \ 438s --input \ 438s input_bins_filepaths.txt \ 438s --output \ 438s 0_bins_window_19.index 438s ============= Timings ============= 438s Wall clock time [s]: 0.01 438s Peak memory usage [MiB]: 77.7 438s Determine IBF size [s]: 0.00 438s Index allocation [s]: 0.00 438s User bin I/O avg per thread [s]: 0.00 438s User bin I/O sum [s]: 0.00 438s Fill IBF avg per thread [s]: 0.00 438s Fill IBF sum [s]: 0.00 438s Store index [s]: 0.00 438s INFO [job raptor-build.cwl] completed success 438s INFO Final process status is success 438s "checksum": "sha1$64a4328eb3dab99bf6ecd38f84f4ae45fd01a4dd", 439s autopkgtest [02:41:06]: test cwl: -----------------------] 439s autopkgtest [02:41:06]: test cwl: - - - - - - - - - - results - - - - - - - - - - 439s cwl PASS 440s autopkgtest [02:41:07]: test run-unit-test: preparing testbed 595s autopkgtest [02:43:42]: testbed dpkg architecture: ppc64el 595s autopkgtest [02:43:42]: testbed apt version: 2.7.14build2 595s autopkgtest [02:43:42]: @@@@@@@@@@@@@@@@@@@@ test bed setup 596s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 596s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [326 kB] 597s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [54.4 kB] 597s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.3 kB] 597s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B] 597s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [95.5 kB] 597s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 597s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [976 B] 597s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 597s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [433 kB] 597s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 597s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [1004 B] 597s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 598s Fetched 1054 kB in 1s (1276 kB/s) 598s Reading package lists... 600s sh: 4: dhclient: not found 601s Reading package lists... 601s Building dependency tree... 601s Reading state information... 601s Calculating upgrade... 601s The following packages will be upgraded: 601s apport apport-core-dump-handler initramfs-tools initramfs-tools-bin 601s initramfs-tools-core libnetplan1 libnuma1 libunwind8 make man-db 601s netcat-openbsd netplan-generator netplan.io numactl python3-apport 601s python3-netplan python3-problem-report 601s 17 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 601s Need to get 2255 kB of archives. 601s After this operation, 19.5 kB disk space will be freed. 601s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-problem-report all 2.28.1-0ubuntu1 [23.8 kB] 601s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-apport all 2.28.1-0ubuntu1 [92.1 kB] 601s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el apport-core-dump-handler all 2.28.1-0ubuntu1 [16.8 kB] 601s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el apport all 2.28.1-0ubuntu1 [83.5 kB] 602s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el netplan-generator ppc64el 1.0-2ubuntu1 [59.3 kB] 602s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-netplan ppc64el 1.0-2ubuntu1 [21.8 kB] 602s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el initramfs-tools all 0.142ubuntu25 [9054 B] 602s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el initramfs-tools-core all 0.142ubuntu25 [50.1 kB] 602s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el initramfs-tools-bin ppc64el 0.142ubuntu25 [21.1 kB] 602s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el netplan.io ppc64el 1.0-2ubuntu1 [66.6 kB] 602s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libnetplan1 ppc64el 1.0-2ubuntu1 [138 kB] 602s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el netcat-openbsd ppc64el 1.226-1ubuntu2 [46.2 kB] 602s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libnuma1 ppc64el 2.0.18-1build1 [28.2 kB] 602s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el man-db ppc64el 2.12.0-4build2 [1281 kB] 602s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libunwind8 ppc64el 1.6.2-3build1 [60.1 kB] 602s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el make ppc64el 4.3-4.1build2 [214 kB] 602s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el numactl ppc64el 2.0.18-1build1 [43.9 kB] 602s Preconfiguring packages ... 602s Fetched 2255 kB in 1s (3009 kB/s) 602s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 602s Preparing to unpack .../00-python3-problem-report_2.28.1-0ubuntu1_all.deb ... 602s Unpacking python3-problem-report (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 602s Preparing to unpack .../01-python3-apport_2.28.1-0ubuntu1_all.deb ... 602s Unpacking python3-apport (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 602s Preparing to unpack .../02-apport-core-dump-handler_2.28.1-0ubuntu1_all.deb ... 602s Unpacking apport-core-dump-handler (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 602s Preparing to unpack .../03-apport_2.28.1-0ubuntu1_all.deb ... 602s Unpacking apport (2.28.1-0ubuntu1) over (2.28.0-0ubuntu1) ... 602s Preparing to unpack .../04-netplan-generator_1.0-2ubuntu1_ppc64el.deb ... 602s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 602s Unpacking netplan-generator (1.0-2ubuntu1) over (1.0-2build1) ... 602s Preparing to unpack .../05-python3-netplan_1.0-2ubuntu1_ppc64el.deb ... 602s Unpacking python3-netplan (1.0-2ubuntu1) over (1.0-2build1) ... 603s Preparing to unpack .../06-initramfs-tools_0.142ubuntu25_all.deb ... 603s Unpacking initramfs-tools (0.142ubuntu25) over (0.142ubuntu24) ... 603s Preparing to unpack .../07-initramfs-tools-core_0.142ubuntu25_all.deb ... 603s Unpacking initramfs-tools-core (0.142ubuntu25) over (0.142ubuntu24) ... 603s Preparing to unpack .../08-initramfs-tools-bin_0.142ubuntu25_ppc64el.deb ... 603s Unpacking initramfs-tools-bin (0.142ubuntu25) over (0.142ubuntu24) ... 603s Preparing to unpack .../09-netplan.io_1.0-2ubuntu1_ppc64el.deb ... 603s Unpacking netplan.io (1.0-2ubuntu1) over (1.0-2build1) ... 603s Preparing to unpack .../10-libnetplan1_1.0-2ubuntu1_ppc64el.deb ... 603s Unpacking libnetplan1:ppc64el (1.0-2ubuntu1) over (1.0-2build1) ... 603s Preparing to unpack .../11-netcat-openbsd_1.226-1ubuntu2_ppc64el.deb ... 603s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ... 603s Preparing to unpack .../12-libnuma1_2.0.18-1build1_ppc64el.deb ... 603s Unpacking libnuma1:ppc64el (2.0.18-1build1) over (2.0.18-1) ... 603s Preparing to unpack .../13-man-db_2.12.0-4build2_ppc64el.deb ... 603s Unpacking man-db (2.12.0-4build2) over (2.12.0-4build1) ... 603s Preparing to unpack .../14-libunwind8_1.6.2-3build1_ppc64el.deb ... 603s Unpacking libunwind8:ppc64el (1.6.2-3build1) over (1.6.2-3) ... 603s Preparing to unpack .../15-make_4.3-4.1build2_ppc64el.deb ... 603s Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ... 603s Preparing to unpack .../16-numactl_2.0.18-1build1_ppc64el.deb ... 603s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ... 603s Setting up python3-problem-report (2.28.1-0ubuntu1) ... 603s Setting up netcat-openbsd (1.226-1ubuntu2) ... 603s Setting up libnetplan1:ppc64el (1.0-2ubuntu1) ... 603s Setting up man-db (2.12.0-4build2) ... 603s Updating database of manual pages ... 605s man-db.service is a disabled or a static unit not running, not starting it. 605s Setting up libunwind8:ppc64el (1.6.2-3build1) ... 605s Setting up python3-apport (2.28.1-0ubuntu1) ... 605s Setting up make (4.3-4.1build2) ... 605s Setting up libnuma1:ppc64el (2.0.18-1build1) ... 605s Setting up python3-netplan (1.0-2ubuntu1) ... 605s Setting up netplan-generator (1.0-2ubuntu1) ... 605s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 605s Setting up initramfs-tools-bin (0.142ubuntu25) ... 605s Setting up numactl (2.0.18-1build1) ... 605s Setting up netplan.io (1.0-2ubuntu1) ... 605s Setting up initramfs-tools-core (0.142ubuntu25) ... 605s Setting up initramfs-tools (0.142ubuntu25) ... 605s update-initramfs: deferring update (trigger activated) 605s Setting up apport-core-dump-handler (2.28.1-0ubuntu1) ... 606s Setting up apport (2.28.1-0ubuntu1) ... 606s Installing new version of config file /etc/apport/crashdb.conf ... 607s apport-autoreport.service is a disabled or a static unit not running, not starting it. 607s Processing triggers for dbus (1.14.10-4ubuntu4) ... 607s Processing triggers for libc-bin (2.39-0ubuntu8) ... 607s Processing triggers for initramfs-tools (0.142ubuntu25) ... 607s update-initramfs: Generating /boot/initrd.img-6.8.0-22-generic 607s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 614s Reading package lists... 614s Building dependency tree... 614s Reading state information... 614s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 615s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 615s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 615s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 615s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 616s Reading package lists... 616s Reading package lists... 616s Building dependency tree... 616s Reading state information... 616s Calculating upgrade... 616s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 616s Reading package lists... 616s Building dependency tree... 616s Reading state information... 617s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 617s autopkgtest [02:44:04]: rebooting testbed after setup commands that affected boot 783s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 796s Reading package lists... 796s Building dependency tree... 796s Reading state information... 796s Starting pkgProblemResolver with broken count: 0 796s Starting 2 pkgProblemResolver with broken count: 0 796s Done 797s The following additional packages will be installed: 797s cmake cmake-data cpp cpp-13 cpp-13-powerpc64le-linux-gnu 797s cpp-powerpc64le-linux-gnu g++ g++-13 g++-13-powerpc64le-linux-gnu 797s g++-powerpc64le-linux-gnu gcc gcc-13 gcc-13-base 797s gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu googletest libasan8 797s libatomic1 libbz2-dev libcc1-0 libcereal-dev libgcc-13-dev libgomp1 797s libgtest-dev libisl23 libitm1 libjsoncpp25 liblsan0 libmpc3 libpkgconf3 797s libquadmath0 librhash0 libseqan3-dev libsimde-dev libstdc++-13-dev libtsan2 797s libubsan1 libxxhash-dev libyaml-cpp-dev libyaml-cpp0.8 pkg-config pkgconf 797s pkgconf-bin rapidjson-dev seqan-raptor seqan-raptor-doc zlib1g-dev 797s Suggested packages: 797s cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc gcc-13-locales 797s cpp-13-doc gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool 797s flex bison gdb gcc-doc gdb-powerpc64le-linux-gnu libstdc++-13-doc 797s rapidjson-doc cwl-runner 797s Recommended packages: 797s bzip2-doc 797s The following NEW packages will be installed: 797s autopkgtest-satdep cmake cmake-data cpp cpp-13 cpp-13-powerpc64le-linux-gnu 797s cpp-powerpc64le-linux-gnu g++ g++-13 g++-13-powerpc64le-linux-gnu 797s g++-powerpc64le-linux-gnu gcc gcc-13 gcc-13-base 797s gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu googletest libasan8 797s libatomic1 libbz2-dev libcc1-0 libcereal-dev libgcc-13-dev libgomp1 797s libgtest-dev libisl23 libitm1 libjsoncpp25 liblsan0 libmpc3 libpkgconf3 797s libquadmath0 librhash0 libseqan3-dev libsimde-dev libstdc++-13-dev libtsan2 797s libubsan1 libxxhash-dev libyaml-cpp-dev libyaml-cpp0.8 pkg-config pkgconf 797s pkgconf-bin rapidjson-dev seqan-raptor seqan-raptor-doc zlib1g-dev 797s 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. 797s Need to get 77.4 MB/77.4 MB of archives. 797s After this operation, 303 MB of additional disk space will be used. 797s Get:1 /tmp/autopkgtest.zDqAb5/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [776 B] 797s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libjsoncpp25 ppc64el 1.9.5-6build1 [89.0 kB] 797s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el librhash0 ppc64el 1.4.3-3build1 [147 kB] 797s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el cmake-data all 3.28.3-1build7 [2155 kB] 797s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el cmake ppc64el 3.28.3-1build7 [11.6 MB] 798s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-base ppc64el 13.2.0-23ubuntu4 [49.0 kB] 798s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3build1 [886 kB] 798s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1build1 [62.1 kB] 798s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-23ubuntu4 [10.7 MB] 798s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-23ubuntu4 [1038 B] 798s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B] 798s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB] 798s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240412-0ubuntu1 [48.1 kB] 798s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240412-0ubuntu1 [161 kB] 798s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240412-0ubuntu1 [32.4 kB] 798s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240412-0ubuntu1 [10.7 kB] 798s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240412-0ubuntu1 [2971 kB] 798s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240412-0ubuntu1 [1327 kB] 798s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240412-0ubuntu1 [2709 kB] 799s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240412-0ubuntu1 [1196 kB] 799s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240412-0ubuntu1 [158 kB] 799s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-23ubuntu4 [1580 kB] 799s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-23ubuntu4 [20.6 MB] 799s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-23ubuntu4 [482 kB] 799s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B] 799s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B] 799s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-23ubuntu4 [2512 kB] 799s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-23ubuntu4 [12.2 MB] 800s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-23ubuntu4 [14.5 kB] 800s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B] 800s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B] 800s Get:32 http://ftpmaster.internal/ubuntu noble/universe ppc64el googletest all 1.14.0-1 [521 kB] 800s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5.1 [51.2 kB] 800s Get:34 http://ftpmaster.internal/ubuntu noble/universe ppc64el rapidjson-dev all 1.1.0+dfsg2-7.1 [96.7 kB] 800s Get:35 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcereal-dev ppc64el 1.3.2+dfsg-5 [222 kB] 800s Get:36 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgtest-dev ppc64el 1.14.0-1 [280 kB] 800s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libpkgconf3 ppc64el 1.8.1-2 [36.9 kB] 800s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3.1ubuntu2 [902 kB] 800s Get:39 http://ftpmaster.internal/ubuntu noble/universe ppc64el libseqan3-dev all 3.3.0+ds-1 [748 kB] 800s Get:40 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsimde-dev all 0.7.2-6 [261 kB] 800s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libxxhash-dev ppc64el 0.8.2-2build1 [90.5 kB] 800s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libyaml-cpp0.8 ppc64el 0.8.0+dfsg-6build1 [127 kB] 800s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libyaml-cpp-dev ppc64el 0.8.0+dfsg-6build1 [246 kB] 800s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf-bin ppc64el 1.8.1-2 [22.0 kB] 800s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf ppc64el 1.8.1-2 [16.7 kB] 800s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el pkg-config ppc64el 1.8.1-2 [7170 B] 800s Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el seqan-raptor ppc64el 3.0.1+ds-5 [715 kB] 800s Get:48 http://ftpmaster.internal/ubuntu noble/universe ppc64el seqan-raptor-doc all 3.0.1+ds-5 [1247 kB] 800s Fetched 77.4 MB in 3s (24.7 MB/s) 800s Selecting previously unselected package libjsoncpp25:ppc64el. 800s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71980 files and directories currently installed.) 800s Preparing to unpack .../00-libjsoncpp25_1.9.5-6build1_ppc64el.deb ... 800s Unpacking libjsoncpp25:ppc64el (1.9.5-6build1) ... 800s Selecting previously unselected package librhash0:ppc64el. 800s Preparing to unpack .../01-librhash0_1.4.3-3build1_ppc64el.deb ... 800s Unpacking librhash0:ppc64el (1.4.3-3build1) ... 800s Selecting previously unselected package cmake-data. 800s Preparing to unpack .../02-cmake-data_3.28.3-1build7_all.deb ... 800s Unpacking cmake-data (3.28.3-1build7) ... 801s Selecting previously unselected package cmake. 801s Preparing to unpack .../03-cmake_3.28.3-1build7_ppc64el.deb ... 801s Unpacking cmake (3.28.3-1build7) ... 801s Selecting previously unselected package gcc-13-base:ppc64el. 801s Preparing to unpack .../04-gcc-13-base_13.2.0-23ubuntu4_ppc64el.deb ... 801s Unpacking gcc-13-base:ppc64el (13.2.0-23ubuntu4) ... 801s Selecting previously unselected package libisl23:ppc64el. 801s Preparing to unpack .../05-libisl23_0.26-3build1_ppc64el.deb ... 801s Unpacking libisl23:ppc64el (0.26-3build1) ... 801s Selecting previously unselected package libmpc3:ppc64el. 801s Preparing to unpack .../06-libmpc3_1.3.1-1build1_ppc64el.deb ... 801s Unpacking libmpc3:ppc64el (1.3.1-1build1) ... 801s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu. 801s Preparing to unpack .../07-cpp-13-powerpc64le-linux-gnu_13.2.0-23ubuntu4_ppc64el.deb ... 801s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 801s Selecting previously unselected package cpp-13. 801s Preparing to unpack .../08-cpp-13_13.2.0-23ubuntu4_ppc64el.deb ... 801s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 801s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 801s Preparing to unpack .../09-cpp-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 801s Unpacking cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 801s Selecting previously unselected package cpp. 801s Preparing to unpack .../10-cpp_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 801s Unpacking cpp (4:13.2.0-7ubuntu1) ... 801s Selecting previously unselected package libcc1-0:ppc64el. 801s Preparing to unpack .../11-libcc1-0_14-20240412-0ubuntu1_ppc64el.deb ... 801s Unpacking libcc1-0:ppc64el (14-20240412-0ubuntu1) ... 801s Selecting previously unselected package libgomp1:ppc64el. 801s Preparing to unpack .../12-libgomp1_14-20240412-0ubuntu1_ppc64el.deb ... 801s Unpacking libgomp1:ppc64el (14-20240412-0ubuntu1) ... 801s Selecting previously unselected package libitm1:ppc64el. 801s Preparing to unpack .../13-libitm1_14-20240412-0ubuntu1_ppc64el.deb ... 801s Unpacking libitm1:ppc64el (14-20240412-0ubuntu1) ... 801s Selecting previously unselected package libatomic1:ppc64el. 801s Preparing to unpack .../14-libatomic1_14-20240412-0ubuntu1_ppc64el.deb ... 801s Unpacking libatomic1:ppc64el (14-20240412-0ubuntu1) ... 801s Selecting previously unselected package libasan8:ppc64el. 801s Preparing to unpack .../15-libasan8_14-20240412-0ubuntu1_ppc64el.deb ... 801s Unpacking libasan8:ppc64el (14-20240412-0ubuntu1) ... 801s Selecting previously unselected package liblsan0:ppc64el. 801s Preparing to unpack .../16-liblsan0_14-20240412-0ubuntu1_ppc64el.deb ... 801s Unpacking liblsan0:ppc64el (14-20240412-0ubuntu1) ... 801s Selecting previously unselected package libtsan2:ppc64el. 801s Preparing to unpack .../17-libtsan2_14-20240412-0ubuntu1_ppc64el.deb ... 801s Unpacking libtsan2:ppc64el (14-20240412-0ubuntu1) ... 801s Selecting previously unselected package libubsan1:ppc64el. 801s Preparing to unpack .../18-libubsan1_14-20240412-0ubuntu1_ppc64el.deb ... 801s Unpacking libubsan1:ppc64el (14-20240412-0ubuntu1) ... 801s Selecting previously unselected package libquadmath0:ppc64el. 801s Preparing to unpack .../19-libquadmath0_14-20240412-0ubuntu1_ppc64el.deb ... 801s Unpacking libquadmath0:ppc64el (14-20240412-0ubuntu1) ... 801s Selecting previously unselected package libgcc-13-dev:ppc64el. 801s Preparing to unpack .../20-libgcc-13-dev_13.2.0-23ubuntu4_ppc64el.deb ... 801s Unpacking libgcc-13-dev:ppc64el (13.2.0-23ubuntu4) ... 802s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu. 802s Preparing to unpack .../21-gcc-13-powerpc64le-linux-gnu_13.2.0-23ubuntu4_ppc64el.deb ... 802s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 802s Selecting previously unselected package gcc-13. 802s Preparing to unpack .../22-gcc-13_13.2.0-23ubuntu4_ppc64el.deb ... 802s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 802s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 802s Preparing to unpack .../23-gcc-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 802s Unpacking gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 802s Selecting previously unselected package gcc. 802s Preparing to unpack .../24-gcc_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 802s Unpacking gcc (4:13.2.0-7ubuntu1) ... 802s Selecting previously unselected package libstdc++-13-dev:ppc64el. 802s Preparing to unpack .../25-libstdc++-13-dev_13.2.0-23ubuntu4_ppc64el.deb ... 802s Unpacking libstdc++-13-dev:ppc64el (13.2.0-23ubuntu4) ... 802s Selecting previously unselected package g++-13-powerpc64le-linux-gnu. 802s Preparing to unpack .../26-g++-13-powerpc64le-linux-gnu_13.2.0-23ubuntu4_ppc64el.deb ... 802s Unpacking g++-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 802s Selecting previously unselected package g++-13. 802s Preparing to unpack .../27-g++-13_13.2.0-23ubuntu4_ppc64el.deb ... 802s Unpacking g++-13 (13.2.0-23ubuntu4) ... 802s Selecting previously unselected package g++-powerpc64le-linux-gnu. 802s Preparing to unpack .../28-g++-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 802s Unpacking g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 802s Selecting previously unselected package g++. 802s Preparing to unpack .../29-g++_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 802s Unpacking g++ (4:13.2.0-7ubuntu1) ... 802s Selecting previously unselected package googletest. 802s Preparing to unpack .../30-googletest_1.14.0-1_all.deb ... 802s Unpacking googletest (1.14.0-1) ... 802s Selecting previously unselected package libbz2-dev:ppc64el. 802s Preparing to unpack .../31-libbz2-dev_1.0.8-5.1_ppc64el.deb ... 802s Unpacking libbz2-dev:ppc64el (1.0.8-5.1) ... 802s Selecting previously unselected package rapidjson-dev. 802s Preparing to unpack .../32-rapidjson-dev_1.1.0+dfsg2-7.1_all.deb ... 802s Unpacking rapidjson-dev (1.1.0+dfsg2-7.1) ... 802s Selecting previously unselected package libcereal-dev. 802s Preparing to unpack .../33-libcereal-dev_1.3.2+dfsg-5_ppc64el.deb ... 802s Unpacking libcereal-dev (1.3.2+dfsg-5) ... 802s Selecting previously unselected package libgtest-dev:ppc64el. 802s Preparing to unpack .../34-libgtest-dev_1.14.0-1_ppc64el.deb ... 802s Unpacking libgtest-dev:ppc64el (1.14.0-1) ... 802s Selecting previously unselected package libpkgconf3:ppc64el. 802s Preparing to unpack .../35-libpkgconf3_1.8.1-2_ppc64el.deb ... 802s Unpacking libpkgconf3:ppc64el (1.8.1-2) ... 803s Selecting previously unselected package zlib1g-dev:ppc64el. 803s Preparing to unpack .../36-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_ppc64el.deb ... 803s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu2) ... 803s Selecting previously unselected package libseqan3-dev. 803s Preparing to unpack .../37-libseqan3-dev_3.3.0+ds-1_all.deb ... 803s Unpacking libseqan3-dev (3.3.0+ds-1) ... 803s Selecting previously unselected package libsimde-dev. 803s Preparing to unpack .../38-libsimde-dev_0.7.2-6_all.deb ... 803s Unpacking libsimde-dev (0.7.2-6) ... 803s Selecting previously unselected package libxxhash-dev:ppc64el. 803s Preparing to unpack .../39-libxxhash-dev_0.8.2-2build1_ppc64el.deb ... 803s Unpacking libxxhash-dev:ppc64el (0.8.2-2build1) ... 803s Selecting previously unselected package libyaml-cpp0.8:ppc64el. 803s Preparing to unpack .../40-libyaml-cpp0.8_0.8.0+dfsg-6build1_ppc64el.deb ... 803s Unpacking libyaml-cpp0.8:ppc64el (0.8.0+dfsg-6build1) ... 803s Selecting previously unselected package libyaml-cpp-dev:ppc64el. 803s Preparing to unpack .../41-libyaml-cpp-dev_0.8.0+dfsg-6build1_ppc64el.deb ... 803s Unpacking libyaml-cpp-dev:ppc64el (0.8.0+dfsg-6build1) ... 803s Selecting previously unselected package pkgconf-bin. 803s Preparing to unpack .../42-pkgconf-bin_1.8.1-2_ppc64el.deb ... 803s Unpacking pkgconf-bin (1.8.1-2) ... 803s Selecting previously unselected package pkgconf:ppc64el. 803s Preparing to unpack .../43-pkgconf_1.8.1-2_ppc64el.deb ... 803s Unpacking pkgconf:ppc64el (1.8.1-2) ... 803s Selecting previously unselected package pkg-config:ppc64el. 803s Preparing to unpack .../44-pkg-config_1.8.1-2_ppc64el.deb ... 803s Unpacking pkg-config:ppc64el (1.8.1-2) ... 803s Selecting previously unselected package seqan-raptor. 803s Preparing to unpack .../45-seqan-raptor_3.0.1+ds-5_ppc64el.deb ... 803s Unpacking seqan-raptor (3.0.1+ds-5) ... 803s Selecting previously unselected package seqan-raptor-doc. 803s Preparing to unpack .../46-seqan-raptor-doc_3.0.1+ds-5_all.deb ... 803s Unpacking seqan-raptor-doc (3.0.1+ds-5) ... 803s Selecting previously unselected package autopkgtest-satdep. 803s Preparing to unpack .../47-2-autopkgtest-satdep.deb ... 803s Unpacking autopkgtest-satdep (0) ... 803s Setting up libsimde-dev (0.7.2-6) ... 803s Setting up libyaml-cpp0.8:ppc64el (0.8.0+dfsg-6build1) ... 803s Setting up libyaml-cpp-dev:ppc64el (0.8.0+dfsg-6build1) ... 803s Setting up libgomp1:ppc64el (14-20240412-0ubuntu1) ... 803s Setting up googletest (1.14.0-1) ... 803s Setting up rapidjson-dev (1.1.0+dfsg2-7.1) ... 803s Setting up libpkgconf3:ppc64el (1.8.1-2) ... 803s Setting up gcc-13-base:ppc64el (13.2.0-23ubuntu4) ... 803s Setting up libquadmath0:ppc64el (14-20240412-0ubuntu1) ... 803s Setting up libmpc3:ppc64el (1.3.1-1build1) ... 803s Setting up libatomic1:ppc64el (14-20240412-0ubuntu1) ... 803s Setting up libjsoncpp25:ppc64el (1.9.5-6build1) ... 803s Setting up pkgconf-bin (1.8.1-2) ... 803s Setting up libxxhash-dev:ppc64el (0.8.2-2build1) ... 803s Setting up libubsan1:ppc64el (14-20240412-0ubuntu1) ... 803s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu2) ... 803s Setting up librhash0:ppc64el (1.4.3-3build1) ... 803s Setting up libasan8:ppc64el (14-20240412-0ubuntu1) ... 803s Setting up cmake-data (3.28.3-1build7) ... 803s Setting up libtsan2:ppc64el (14-20240412-0ubuntu1) ... 803s Setting up libisl23:ppc64el (0.26-3build1) ... 803s Setting up seqan-raptor (3.0.1+ds-5) ... 803s Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 803s Setting up seqan-raptor-doc (3.0.1+ds-5) ... 803s Setting up libcc1-0:ppc64el (14-20240412-0ubuntu1) ... 803s Setting up liblsan0:ppc64el (14-20240412-0ubuntu1) ... 803s Setting up libitm1:ppc64el (14-20240412-0ubuntu1) ... 803s Setting up cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 803s Setting up libbz2-dev:ppc64el (1.0.8-5.1) ... 803s Setting up libgtest-dev:ppc64el (1.14.0-1) ... 803s Setting up cpp-13 (13.2.0-23ubuntu4) ... 803s Setting up libcereal-dev (1.3.2+dfsg-5) ... 803s Setting up pkgconf:ppc64el (1.8.1-2) ... 803s Setting up pkg-config:ppc64el (1.8.1-2) ... 803s Setting up libgcc-13-dev:ppc64el (13.2.0-23ubuntu4) ... 803s Setting up cpp (4:13.2.0-7ubuntu1) ... 803s Setting up cmake (3.28.3-1build7) ... 803s Setting up libstdc++-13-dev:ppc64el (13.2.0-23ubuntu4) ... 803s Setting up libseqan3-dev (3.3.0+ds-1) ... 803s Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 803s Setting up gcc-13 (13.2.0-23ubuntu4) ... 803s Setting up g++-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 803s Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 803s Setting up g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 803s Setting up g++-13 (13.2.0-23ubuntu4) ... 803s Setting up gcc (4:13.2.0-7ubuntu1) ... 803s Setting up g++ (4:13.2.0-7ubuntu1) ... 803s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 803s Setting up autopkgtest-satdep (0) ... 803s Processing triggers for man-db (2.12.0-4build2) ... 804s Processing triggers for libc-bin (2.39-0ubuntu8) ... 807s (Reading database ... 78718 files and directories currently installed.) 807s Removing autopkgtest-satdep (0) ... 815s autopkgtest [02:47:22]: test run-unit-test: [----------------------- 815s + pkg=seqan-raptor 815s + export LC_ALL=C.UTF-8 815s + LC_ALL=C.UTF-8 815s + '[' /tmp/autopkgtest.zDqAb5/autopkgtest_tmp = '' ']' 815s + cp -r CHANGELOG.md CMakeLists.txt CODE_OF_CONDUCT.md INSTALL.md LICENSE.md README.md build_system debian doc include lib src test util workflow /tmp/autopkgtest.zDqAb5/autopkgtest_tmp 815s + export 'CXXFLAGS=-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/sharg-parser/include/ -I/tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/' 815s + CXXFLAGS='-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/sharg-parser/include/ -I/tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/' 815s + cd /tmp/autopkgtest.zDqAb5/autopkgtest_tmp 815s + patch -p1 815s patching file test/raptor-test.cmake 815s + cd /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/test/unit 815s + cmake -DRAPTOR_SUBMODULES_DIR=/tmp/autopkgtest.zDqAb5/autopkgtest_tmp/test/unit/../../lib -DRAPTOR_NATIVE_BUILD=OFF . 815s -- The CXX compiler identification is GNU 13.2.0 815s -- The C compiler identification is GNU 13.2.0 815s -- Detecting CXX compiler ABI info 815s -- Detecting CXX compiler ABI info - done 815s -- Check for working CXX compiler: /usr/bin/c++ - skipped 815s -- Detecting CXX compile features 815s -- Detecting CXX compile features - done 815s -- Detecting C compiler ABI info 815s -- Detecting C compiler ABI info - done 815s -- Check for working C compiler: /usr/bin/cc - skipped 815s -- Detecting C compile features 815s -- Detecting C compile features - done 815s -- Finding RAPTOR and checking requirements: 815s -- RAPTOR include dir found: /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include 815s -- Detected as running from a repository checkout… 815s -- …adding submodule include: /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/chopper/include 815s -- …adding submodule include: /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/robin-hood-hashing/src/include 815s -- …adding submodule include: /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/sharg-parser/include 815s -- …adding submodule include: /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/sharg-parser/test/include 815s -- …adding submodule include: /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include 816s -- C++ Standard-20 support: via -std=c++20 816s -- OpenMP Support: via -fopenmp 816s -- SIMD-OpenMP Support: via -fopenmp-simd 816s -- Suppressing GCC 4 warnings: via -Wno-psabi 816s -- Optimize build: disabled 817s -- Link Time Optimization: enabled 817s -- Binary-stripping: via -s 817s -- Thread support: builtin 817s -- Optional dependency: ZLIB-1.3 found 817s -- Optional dependency: BZip2-1.0.8 found 817s -- Optional dependency: libexecinfo found 817s -- Found Raptor: /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include 817s -- Finding program ccache 817s -- Finding program ccache - Failed 819s -- You can run `make` to build the application. 819s -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") 819s -- Checking for module 'libxxhash' 819s -- Found libxxhash, version 0.8.2 819s -- Test dependency: Google Test 1.14.0 found. 819s -- Configuring done (4.2s) 819s -- Generating done (0.1s) 819s -- Build files have been written to: /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/test/unit 819s + make 819s [ 1%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o 836s [ 2%] Linking CXX static library ../../lib/libraptor_upgrade.a 836s [ 2%] Built target raptor_upgrade 836s [ 2%] Built target xxhash_project 836s [ 3%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o 845s [ 5%] Linking CXX static library ../../../lib/libchopper_layout_lib.a 845s [ 5%] Built target chopper_layout_lib 845s [ 6%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_line.cpp.o 845s [ 7%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o 866s [ 8%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o 874s [ 10%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o 884s [ 11%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o 897s [ 12%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o 917s [ 13%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o 942s [ 15%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o 963s [ 16%] Linking CXX static library ../../lib/libraptor_argument_parsing.a 964s [ 16%] Built target raptor_argument_parsing 964s [ 17%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o 971s [ 18%] Linking CXX static library ../../lib/libraptor_prepare.a 971s [ 18%] Built target raptor_prepare 971s [ 20%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o 981s [ 21%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o 988s [ 22%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o 992s [ 24%] Linking CXX static library ../../lib/libraptor_build.a 992s [ 24%] Built target raptor_build 992s [ 25%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o 994s [ 26%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o 995s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 995s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 995s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/chopper_build.cpp:13: 995s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 995s 20 | : public T, public std::iterator { 995s | ^~~~~~~~ 995s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 995s from /usr/include/c++/13/vector:62, 995s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 995s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 995s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 995s 127 | struct _GLIBCXX17_DEPRECATED iterator 995s | ^~~~~~~~ 997s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, 997s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/chopper_build.cpp:16: 997s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 997s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 997s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 997s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 997s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 997s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 128 bytes 997s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=128’, or disable this warning with ‘-Wno-interference-size’ 997s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 997s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 997s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1000s [ 27%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o 1007s [ 29%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o 1008s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1008s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1008s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/construct_ibf.cpp:13: 1008s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1008s 20 | : public T, public std::iterator { 1008s | ^~~~~~~~ 1008s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 1008s from /usr/include/c++/13/vector:62, 1008s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 1008s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 1008s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 1008s 127 | struct _GLIBCXX17_DEPRECATED iterator 1008s | ^~~~~~~~ 1010s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/construct_ibf.hpp:18, 1010s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/construct_ibf.cpp:16: 1010s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1010s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 1010s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1010s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 1010s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 1010s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 128 bytes 1010s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=128’, or disable this warning with ‘-Wno-interference-size’ 1010s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1010s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 1010s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1012s [ 30%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o 1013s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1013s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1013s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: 1013s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1013s 20 | : public T, public std::iterator { 1013s | ^~~~~~~~ 1013s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 1013s from /usr/include/c++/13/vector:62, 1013s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 1013s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 1013s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 1013s 127 | struct _GLIBCXX17_DEPRECATED iterator 1013s | ^~~~~~~~ 1015s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, 1015s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: 1015s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1015s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 1015s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1015s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 1015s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 1015s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 128 bytes 1015s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=128’, or disable this warning with ‘-Wno-interference-size’ 1015s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1015s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 1015s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1017s [ 31%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o 1018s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1018s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1018s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/hierarchical_build.cpp:13: 1018s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1018s 20 | : public T, public std::iterator { 1018s | ^~~~~~~~ 1018s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 1018s from /usr/include/c++/13/vector:62, 1018s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 1018s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 1018s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 1018s 127 | struct _GLIBCXX17_DEPRECATED iterator 1018s | ^~~~~~~~ 1020s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/construct_ibf.hpp:18, 1020s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/hierarchical_build.cpp:16: 1020s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1020s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 1020s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1020s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 1020s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 1020s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 128 bytes 1020s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=128’, or disable this warning with ‘-Wno-interference-size’ 1020s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1020s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 1020s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1022s [ 32%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o 1031s [ 34%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o 1032s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1032s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1032s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/loop_over_children.cpp:13: 1032s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1032s 20 | : public T, public std::iterator { 1032s | ^~~~~~~~ 1032s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 1032s from /usr/include/c++/13/vector:62, 1032s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 1032s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 1032s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 1032s 127 | struct _GLIBCXX17_DEPRECATED iterator 1032s | ^~~~~~~~ 1034s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/hierarchical_build.hpp:18, 1034s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/loop_over_children.cpp:17: 1034s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1034s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 1034s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 1034s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 1034s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 128 bytes 1034s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=128’, or disable this warning with ‘-Wno-interference-size’ 1034s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1034s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 1034s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035s [ 35%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o 1036s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1036s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1036s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_header.cpp:17: 1036s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1036s 20 | : public T, public std::iterator { 1036s | ^~~~~~~~ 1036s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 1036s from /usr/include/c++/13/algorithm:60, 1036s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/parse_chopper_pack_header.cpp:13: 1036s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 1036s 127 | struct _GLIBCXX17_DEPRECATED iterator 1036s | ^~~~~~~~ 1037s [ 36%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o 1038s [ 37%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o 1039s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1039s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1039s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/read_chopper_pack_file.cpp:13: 1039s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1039s 20 | : public T, public std::iterator { 1039s | ^~~~~~~~ 1039s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 1039s from /usr/include/c++/13/vector:62, 1039s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 1039s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 1039s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 1039s 127 | struct _GLIBCXX17_DEPRECATED iterator 1039s | ^~~~~~~~ 1041s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, 1041s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/read_chopper_pack_file.cpp:17: 1041s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1041s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 1041s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 1041s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 1041s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 128 bytes 1041s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=128’, or disable this warning with ‘-Wno-interference-size’ 1041s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1041s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 1041s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1043s [ 39%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o 1044s [ 40%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o 1045s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, 1045s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:28, 1045s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/update_user_bins.cpp:13: 1045s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 1045s 20 | : public T, public std::iterator { 1045s | ^~~~~~~~ 1045s In file included from /usr/include/c++/13/bits/stl_algobase.h:65, 1045s from /usr/include/c++/13/vector:62, 1045s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/core.h:45, 1045s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/lib/submodules/lemon/include/lemon/list_graph.h:26: 1045s /usr/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 1045s 127 | struct _GLIBCXX17_DEPRECATED iterator 1045s | ^~~~~~~~ 1047s In file included from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/update_user_bins.hpp:15, 1047s from /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/src/build/hibf/update_user_bins.cpp:15: 1047s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1047s 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; 1047s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1047s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags 1047s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define 1047s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 128 bytes 1047s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=128’, or disable this warning with ‘-Wno-interference-size’ 1047s /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 1047s 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; 1047s | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1048s [ 41%] Linking CXX static library ../../../lib/libraptor_build_hibf.a 1048s [ 41%] Built target raptor_build_hibf 1048s [ 43%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o 1070s [ 44%] Linking CXX static library ../../lib/libraptor_layout.a 1070s [ 44%] Built target raptor_layout 1070s [ 45%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o 1072s [ 46%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o 1084s [ 48%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o 1095s [ 49%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o 1108s [ 50%] Linking CXX static library ../../lib/libraptor_search.a 1108s [ 50%] Built target raptor_search 1108s [ 51%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o 1108s [ 53%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o 1109s [ 54%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o 1111s [ 55%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o 1111s [ 56%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o 1113s [ 58%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o 1115s [ 59%] Linking CXX static library ../../lib/libraptor_threshold.a 1115s [ 59%] Built target raptor_threshold 1115s [ 60%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o 1132s [ 62%] Linking CXX executable ../bin/raptor 1149s [ 62%] Built target raptor 1149s [ 63%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o 1197s [ 64%] Linking CXX executable ../../../bin/chopper 1197s [ 64%] Built target chopper 1197s [ 65%] Building CXX object api/CMakeFiles/issue_142.dir/issue_142.cpp.o 1199s [ 67%] Linking CXX executable issue_142 1200s [ 67%] Built target issue_142 1200s [ 68%] Building CXX object api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o 1202s [ 69%] Linking CXX executable memory_usage 1203s [ 69%] Built target memory_usage 1203s [ 70%] Building CXX object api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o 1224s [ 72%] Linking CXX executable validate_shape 1231s [ 72%] Built target validate_shape 1231s [ 73%] Building CXX object cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o 1236s [ 74%] Linking CXX executable options_test 1238s [ 74%] Built target options_test 1238s [ 75%] Building CXX object cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o 1243s [ 77%] Linking CXX executable build_hibf_chopper_test 1245s [ 77%] Built target build_hibf_chopper_test 1245s [ 78%] Building CXX object cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o 1252s [ 79%] Linking CXX executable build_hibf_test 1255s [ 79%] Built target build_hibf_test 1255s [ 81%] Building CXX object cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o 1262s [ 82%] Linking CXX executable build_ibf_compressed_test 1264s [ 82%] Built target build_ibf_compressed_test 1264s [ 83%] Building CXX object cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o 1270s [ 84%] Linking CXX executable build_ibf_partitioned_test 1272s [ 84%] Built target build_ibf_partitioned_test 1272s [ 86%] Building CXX object cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o 1279s [ 87%] Linking CXX executable build_ibf_test 1282s [ 87%] Built target build_ibf_test 1282s [ 88%] Building CXX object cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o 1287s [ 89%] Linking CXX executable search_hibf_test 1289s [ 89%] Built target search_hibf_test 1289s [ 91%] Building CXX object cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o 1296s [ 92%] Linking CXX executable search_hibf_preprocessing_test 1299s [ 92%] Built target search_hibf_preprocessing_test 1299s [ 93%] Building CXX object cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o 1306s [ 94%] Linking CXX executable search_ibf_preprocessing_test 1309s [ 94%] Built target search_ibf_preprocessing_test 1309s [ 96%] Building CXX object cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o 1314s [ 97%] Linking CXX executable search_ibf_test 1317s [ 97%] Built target search_ibf_test 1317s [ 98%] Building CXX object cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o 1323s [100%] Linking CXX executable upgrade_test 1325s [100%] Built target upgrade_test 1325s + find . -name raptor -delete 1325s + ctest . 1325s Test project /tmp/autopkgtest.zDqAb5/autopkgtest_tmp/test/unit 1325s Start 1: api/issue_142 1325s 1/14 Test #1: api/issue_142 ............................... Passed 0.01 sec 1325s Start 2: api/memory_usage 1325s 2/14 Test #2: api/memory_usage ............................ Passed 0.00 sec 1325s Start 3: api/validate_shape 1325s 3/14 Test #3: api/validate_shape .......................... Passed 0.00 sec 1325s Start 4: cli/argument_parsing/options_test 1326s 4/14 Test #4: cli/argument_parsing/options_test ........... Passed 0.19 sec 1326s Start 5: cli/build/build_hibf_chopper_test 1326s 5/14 Test #5: cli/build/build_hibf_chopper_test ........... Passed 0.06 sec 1326s Start 6: cli/build/build_hibf_test 1326s 6/14 Test #6: cli/build/build_hibf_test ................... Passed 0.26 sec 1326s Start 7: cli/build/build_ibf_compressed_test 1327s 7/14 Test #7: cli/build/build_ibf_compressed_test ......... Passed 0.63 sec 1327s Start 8: cli/build/build_ibf_partitioned_test 1328s 8/14 Test #8: cli/build/build_ibf_partitioned_test ........ Passed 1.37 sec 1328s Start 9: cli/build/build_ibf_test 1328s 9/14 Test #9: cli/build/build_ibf_test .................... Passed 0.28 sec 1328s Start 10: cli/search/search_hibf_test 1329s 10/14 Test #10: cli/search/search_hibf_test ................. Passed 0.48 sec 1329s Start 11: cli/search/search_hibf_preprocessing_test 1330s 11/14 Test #11: cli/search/search_hibf_preprocessing_test ... Passed 1.54 sec 1330s Start 12: cli/search/search_ibf_preprocessing_test 1332s 12/14 Test #12: cli/search/search_ibf_preprocessing_test .... Passed 1.38 sec 1332s Start 13: cli/search/search_ibf_test 1332s 13/14 Test #13: cli/search/search_ibf_test .................. Passed 0.47 sec 1332s Start 14: cli/upgrade/upgrade_test 1332s 14/14 Test #14: cli/upgrade/upgrade_test .................... Passed 0.05 sec 1332s 1332s 100% tests passed, 0 tests failed out of 14 1332s 1332s Total Test time (real) = 6.74 sec 1332s + find . -name raptor 1332s autopkgtest [02:55:59]: test run-unit-test: -----------------------] 1333s autopkgtest [02:56:00]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1333s run-unit-test PASS 1334s autopkgtest [02:56:01]: @@@@@@@@@@@@@@@@@@@@ summary 1334s cwl PASS 1334s run-unit-test PASS 1356s Creating nova instance adt-noble-ppc64el-seqan-raptor-20240419-023347-juju-7f2275-prod-proposed-migration-environment-2-fcbb38fd-7971-4dfa-9d76-becc8a0f7aba from image adt/ubuntu-noble-ppc64el-server-20240418.img (UUID af0116ce-26c5-4050-9dd9-30d9ab0ee27b)... 1356s Creating nova instance adt-noble-ppc64el-seqan-raptor-20240419-023347-juju-7f2275-prod-proposed-migration-environment-2-fcbb38fd-7971-4dfa-9d76-becc8a0f7aba from image adt/ubuntu-noble-ppc64el-server-20240418.img (UUID af0116ce-26c5-4050-9dd9-30d9ab0ee27b)...