0s autopkgtest [15:48:56]: starting date and time: 2024-03-23 15:48:56+0000 0s autopkgtest [15:48:56]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:48:56]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._4e8tay8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade samtools-legacy --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-19.secgroup --name adt-noble-ppc64el-samtools-legacy-20240323-154856-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 101s autopkgtest [15:50:37]: testbed dpkg architecture: ppc64el 101s autopkgtest [15:50:37]: testbed apt version: 2.7.12 101s autopkgtest [15:50:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 102s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 102s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 103s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 103s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 103s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 103s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 103s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 103s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 103s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 104s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 104s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 104s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 107s Fetched 9623 kB in 3s (2963 kB/s) 107s Reading package lists... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s Calculating upgrade... 111s The following packages will be REMOVED: 111s libssl3 111s The following NEW packages will be installed: 111s libssl3t64 111s The following packages have been kept back: 111s curl 111s The following packages will be upgraded: 111s openssl 111s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 111s Need to get 3151 kB of archives. 111s After this operation, 73.7 kB of additional disk space will be used. 111s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 112s Fetched 3151 kB in 1s (4573 kB/s) 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 112s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 112s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 112s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 112s wget depends on libssl3 (>= 3.0.0). 112s tnftp depends on libssl3 (>= 3.0.0). 112s tcpdump depends on libssl3 (>= 3.0.0). 112s systemd-resolved depends on libssl3 (>= 3.0.0). 112s systemd depends on libssl3 (>= 3.0.0). 112s sudo depends on libssl3 (>= 3.0.0). 112s rsync depends on libssl3 (>= 3.0.0). 112s python3-cryptography depends on libssl3 (>= 3.0.0). 112s openssh-server depends on libssl3 (>= 3.0.10). 112s openssh-client depends on libssl3 (>= 3.0.10). 112s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 112s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 112s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 112s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 112s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 112s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 112s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 112s libnvme1 depends on libssl3 (>= 3.0.0). 112s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 112s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 112s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 112s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 112s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 112s kmod depends on libssl3 (>= 3.0.0). 112s dhcpcd-base depends on libssl3 (>= 3.0.0). 112s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 112s 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 112s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 112s Selecting previously unselected package libssl3t64:ppc64el. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 112s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 112s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 112s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 112s Setting up openssl (3.0.13-0ubuntu2) ... 112s Processing triggers for man-db (2.12.0-3) ... 113s Processing triggers for libc-bin (2.39-0ubuntu6) ... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 114s sh: Attempting to set up Debian/Ubuntu apt sources automatically 114s sh: Distribution appears to be Ubuntu 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s eatmydata is already the newest version (131-1). 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s dbus is already the newest version (1.14.10-4ubuntu1). 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s rng-tools-debian is already the newest version (2.4). 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s The following packages will be REMOVED: 116s cloud-init* python3-configobj* python3-debconf* 116s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 116s After this operation, 3256 kB disk space will be freed. 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 117s Removing cloud-init (24.1.2-0ubuntu1) ... 117s Removing python3-configobj (5.0.8-3) ... 117s Removing python3-debconf (1.5.86) ... 117s Processing triggers for man-db (2.12.0-3) ... 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 118s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 118s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 118s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 118s invoke-rc.d: policy-rc.d denied execution of try-restart. 118s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s linux-generic is already the newest version (6.8.0-11.11+1). 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 119s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 119s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 122s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Calculating upgrade... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [15:50:59]: rebooting testbed after setup commands that affected boot 295s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 302s autopkgtest [15:53:58]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 305s autopkgtest [15:54:01]: @@@@@@@@@@@@@@@@@@@@ apt-source samtools-legacy 307s Get:1 http://ftpmaster.internal/ubuntu noble/universe samtools-legacy 0.1.19+dfsg-6ubuntu1 (dsc) [2220 B] 307s Get:2 http://ftpmaster.internal/ubuntu noble/universe samtools-legacy 0.1.19+dfsg-6ubuntu1 (tar) [371 kB] 307s Get:3 http://ftpmaster.internal/ubuntu noble/universe samtools-legacy 0.1.19+dfsg-6ubuntu1 (diff) [10.8 kB] 307s gpgv: Signature made Tue Nov 21 23:05:58 2023 UTC 307s gpgv: using RSA key 5C7ABEA20F8630459CC8C8B5E27F2CF8458C2FA4 307s gpgv: Can't check signature: No public key 307s dpkg-source: warning: cannot verify inline signature for ./samtools-legacy_0.1.19+dfsg-6ubuntu1.dsc: no acceptable signature found 307s autopkgtest [15:54:03]: testing package samtools-legacy version 0.1.19+dfsg-6ubuntu1 307s autopkgtest [15:54:03]: build not needed 308s autopkgtest [15:54:04]: test run-unit-test: preparing testbed 313s Reading package lists... 313s Building dependency tree... 313s Reading state information... 313s Starting pkgProblemResolver with broken count: 0 313s Starting 2 pkgProblemResolver with broken count: 0 313s Done 313s The following additional packages will be installed: 313s build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu 313s cpp-powerpc64le-linux-gnu g++ g++-13 g++-13-powerpc64le-linux-gnu 313s g++-powerpc64le-linux-gnu gcc gcc-13 gcc-13-powerpc64le-linux-gnu 313s gcc-powerpc64le-linux-gnu libasan8 libatomic1 libbam-dev libc-dev-bin 313s libc6-dev libcc1-0 libcrypt-dev libdeflate0 libgcc-13-dev libgomp1 libhts3 313s libhtscodecs2 libisl23 libitm1 liblsan0 libmpc3 libquadmath0 313s libstdc++-13-dev libtsan2 libubsan1 linux-libc-dev rpcsvc-proto samtools 313s zlib1g-dev 313s Suggested packages: 313s cpp-doc gcc-13-locales cpp-13-doc gcc-13-doc gcc-multilib manpages-dev 313s autoconf automake libtool flex bison gdb gcc-doc gdb-powerpc64le-linux-gnu 313s glibc-doc libstdc++-13-doc cwltool 313s Recommended packages: 313s manpages manpages-dev libc-devtools 313s The following NEW packages will be installed: 313s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu 313s cpp-powerpc64le-linux-gnu g++ g++-13 g++-13-powerpc64le-linux-gnu 313s g++-powerpc64le-linux-gnu gcc gcc-13 gcc-13-powerpc64le-linux-gnu 313s gcc-powerpc64le-linux-gnu libasan8 libatomic1 libbam-dev libc-dev-bin 313s libc6-dev libcc1-0 libcrypt-dev libdeflate0 libgcc-13-dev libgomp1 libhts3 313s libhtscodecs2 libisl23 libitm1 liblsan0 libmpc3 libquadmath0 313s libstdc++-13-dev libtsan2 libubsan1 linux-libc-dev rpcsvc-proto samtools 313s zlib1g-dev 313s 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. 313s Need to get 64.0 MB/64.0 MB of archives. 313s After this operation, 244 MB of additional disk space will be used. 313s Get:1 /tmp/autopkgtest.TWIAKs/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [728 B] 313s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu6 [21.3 kB] 313s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el linux-libc-dev ppc64el 6.8.0-11.11 [1585 kB] 313s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB] 313s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB] 313s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu6 [2102 kB] 313s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3 [864 kB] 313s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1 [61.2 kB] 313s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [10.7 MB] 313s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-17ubuntu2 [1038 B] 313s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B] 313s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB] 313s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240303-1ubuntu1 [48.1 kB] 313s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 313s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240303-1ubuntu1 [32.4 kB] 313s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240303-1ubuntu1 [10.7 kB] 313s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240303-1ubuntu1 [2973 kB] 313s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240303-1ubuntu1 [1325 kB] 313s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240303-1ubuntu1 [2734 kB] 313s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240303-1ubuntu1 [1194 kB] 313s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240303-1ubuntu1 [158 kB] 313s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-17ubuntu2 [1581 kB] 313s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [20.6 MB] 314s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-17ubuntu2 [477 kB] 314s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B] 314s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B] 314s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-17ubuntu2 [2445 kB] 314s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [12.2 MB] 314s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-17ubuntu2 [14.5 kB] 314s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B] 314s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B] 314s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 314s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3ubuntu1 [902 kB] 314s Get:34 http://ftpmaster.internal/ubuntu noble/universe ppc64el libbam-dev ppc64el 0.1.19+dfsg-6ubuntu1 [151 kB] 314s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 314s Get:36 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 314s Get:37 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 314s Get:38 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools ppc64el 1.19.2-1 [669 kB] 315s Fetched 64.0 MB in 2s (29.0 MB/s) 315s Selecting previously unselected package libc-dev-bin. 315s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 315s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu6_ppc64el.deb ... 315s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 315s Selecting previously unselected package linux-libc-dev:ppc64el. 315s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_ppc64el.deb ... 315s Unpacking linux-libc-dev:ppc64el (6.8.0-11.11) ... 315s Selecting previously unselected package libcrypt-dev:ppc64el. 315s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ... 315s Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) ... 315s Selecting previously unselected package rpcsvc-proto. 315s Preparing to unpack .../03-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ... 315s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 315s Selecting previously unselected package libc6-dev:ppc64el. 315s Preparing to unpack .../04-libc6-dev_2.39-0ubuntu6_ppc64el.deb ... 315s Unpacking libc6-dev:ppc64el (2.39-0ubuntu6) ... 315s Selecting previously unselected package libisl23:ppc64el. 315s Preparing to unpack .../05-libisl23_0.26-3_ppc64el.deb ... 315s Unpacking libisl23:ppc64el (0.26-3) ... 315s Selecting previously unselected package libmpc3:ppc64el. 315s Preparing to unpack .../06-libmpc3_1.3.1-1_ppc64el.deb ... 315s Unpacking libmpc3:ppc64el (1.3.1-1) ... 315s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu. 315s Preparing to unpack .../07-cpp-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 315s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 315s Selecting previously unselected package cpp-13. 315s Preparing to unpack .../08-cpp-13_13.2.0-17ubuntu2_ppc64el.deb ... 315s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 315s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 315s Preparing to unpack .../09-cpp-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 315s Unpacking cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 315s Selecting previously unselected package cpp. 315s Preparing to unpack .../10-cpp_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 315s Unpacking cpp (4:13.2.0-7ubuntu1) ... 315s Selecting previously unselected package libcc1-0:ppc64el. 315s Preparing to unpack .../11-libcc1-0_14-20240303-1ubuntu1_ppc64el.deb ... 315s Unpacking libcc1-0:ppc64el (14-20240303-1ubuntu1) ... 315s Selecting previously unselected package libgomp1:ppc64el. 315s Preparing to unpack .../12-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 315s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 315s Selecting previously unselected package libitm1:ppc64el. 315s Preparing to unpack .../13-libitm1_14-20240303-1ubuntu1_ppc64el.deb ... 315s Unpacking libitm1:ppc64el (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libatomic1:ppc64el. 316s Preparing to unpack .../14-libatomic1_14-20240303-1ubuntu1_ppc64el.deb ... 316s Unpacking libatomic1:ppc64el (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libasan8:ppc64el. 316s Preparing to unpack .../15-libasan8_14-20240303-1ubuntu1_ppc64el.deb ... 316s Unpacking libasan8:ppc64el (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package liblsan0:ppc64el. 316s Preparing to unpack .../16-liblsan0_14-20240303-1ubuntu1_ppc64el.deb ... 316s Unpacking liblsan0:ppc64el (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libtsan2:ppc64el. 316s Preparing to unpack .../17-libtsan2_14-20240303-1ubuntu1_ppc64el.deb ... 316s Unpacking libtsan2:ppc64el (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libubsan1:ppc64el. 316s Preparing to unpack .../18-libubsan1_14-20240303-1ubuntu1_ppc64el.deb ... 316s Unpacking libubsan1:ppc64el (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libquadmath0:ppc64el. 316s Preparing to unpack .../19-libquadmath0_14-20240303-1ubuntu1_ppc64el.deb ... 316s Unpacking libquadmath0:ppc64el (14-20240303-1ubuntu1) ... 316s Selecting previously unselected package libgcc-13-dev:ppc64el. 316s Preparing to unpack .../20-libgcc-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 316s Unpacking libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ... 316s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu. 316s Preparing to unpack .../21-gcc-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 316s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 316s Selecting previously unselected package gcc-13. 316s Preparing to unpack .../22-gcc-13_13.2.0-17ubuntu2_ppc64el.deb ... 316s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 316s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 316s Preparing to unpack .../23-gcc-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 316s Unpacking gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 316s Selecting previously unselected package gcc. 316s Preparing to unpack .../24-gcc_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 316s Unpacking gcc (4:13.2.0-7ubuntu1) ... 316s Selecting previously unselected package libstdc++-13-dev:ppc64el. 316s Preparing to unpack .../25-libstdc++-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 316s Unpacking libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ... 317s Selecting previously unselected package g++-13-powerpc64le-linux-gnu. 317s Preparing to unpack .../26-g++-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 317s Unpacking g++-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 317s Selecting previously unselected package g++-13. 317s Preparing to unpack .../27-g++-13_13.2.0-17ubuntu2_ppc64el.deb ... 317s Unpacking g++-13 (13.2.0-17ubuntu2) ... 317s Selecting previously unselected package g++-powerpc64le-linux-gnu. 317s Preparing to unpack .../28-g++-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 317s Unpacking g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 317s Selecting previously unselected package g++. 317s Preparing to unpack .../29-g++_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 317s Unpacking g++ (4:13.2.0-7ubuntu1) ... 317s Selecting previously unselected package build-essential. 317s Preparing to unpack .../30-build-essential_12.10ubuntu1_ppc64el.deb ... 317s Unpacking build-essential (12.10ubuntu1) ... 317s Selecting previously unselected package zlib1g-dev:ppc64el. 317s Preparing to unpack .../31-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_ppc64el.deb ... 317s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ... 317s Selecting previously unselected package libbam-dev. 317s Preparing to unpack .../32-libbam-dev_0.1.19+dfsg-6ubuntu1_ppc64el.deb ... 317s Unpacking libbam-dev (0.1.19+dfsg-6ubuntu1) ... 317s Selecting previously unselected package libdeflate0:ppc64el. 317s Preparing to unpack .../33-libdeflate0_1.19-1_ppc64el.deb ... 317s Unpacking libdeflate0:ppc64el (1.19-1) ... 317s Selecting previously unselected package libhtscodecs2:ppc64el. 317s Preparing to unpack .../34-libhtscodecs2_1.6.0-1_ppc64el.deb ... 317s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 317s Selecting previously unselected package libhts3:ppc64el. 317s Preparing to unpack .../35-libhts3_1.18+ds-1_ppc64el.deb ... 317s Unpacking libhts3:ppc64el (1.18+ds-1) ... 317s Selecting previously unselected package samtools. 317s Preparing to unpack .../36-samtools_1.19.2-1_ppc64el.deb ... 317s Unpacking samtools (1.19.2-1) ... 317s Selecting previously unselected package autopkgtest-satdep. 317s Preparing to unpack .../37-1-autopkgtest-satdep.deb ... 317s Unpacking autopkgtest-satdep (0) ... 317s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 317s Setting up libdeflate0:ppc64el (1.19-1) ... 317s Setting up linux-libc-dev:ppc64el (6.8.0-11.11) ... 317s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ... 317s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 317s Setting up libquadmath0:ppc64el (14-20240303-1ubuntu1) ... 317s Setting up libmpc3:ppc64el (1.3.1-1) ... 317s Setting up libatomic1:ppc64el (14-20240303-1ubuntu1) ... 317s Setting up libubsan1:ppc64el (14-20240303-1ubuntu1) ... 317s Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ... 317s Setting up libasan8:ppc64el (14-20240303-1ubuntu1) ... 317s Setting up libtsan2:ppc64el (14-20240303-1ubuntu1) ... 317s Setting up libisl23:ppc64el (0.26-3) ... 317s Setting up libc-dev-bin (2.39-0ubuntu6) ... 317s Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 317s Setting up libcc1-0:ppc64el (14-20240303-1ubuntu1) ... 317s Setting up liblsan0:ppc64el (14-20240303-1ubuntu1) ... 317s Setting up libitm1:ppc64el (14-20240303-1ubuntu1) ... 317s Setting up cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 317s Setting up libhts3:ppc64el (1.18+ds-1) ... 317s Setting up cpp-13 (13.2.0-17ubuntu2) ... 317s Setting up samtools (1.19.2-1) ... 317s Setting up libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ... 317s Setting up cpp (4:13.2.0-7ubuntu1) ... 317s Setting up libc6-dev:ppc64el (2.39-0ubuntu6) ... 317s Setting up libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ... 317s Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 317s Setting up gcc-13 (13.2.0-17ubuntu2) ... 317s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ... 317s Setting up g++-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 317s Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 317s Setting up libbam-dev (0.1.19+dfsg-6ubuntu1) ... 317s Setting up g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 317s Setting up g++-13 (13.2.0-17ubuntu2) ... 317s Setting up gcc (4:13.2.0-7ubuntu1) ... 317s Setting up g++ (4:13.2.0-7ubuntu1) ... 317s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 317s Setting up build-essential (12.10ubuntu1) ... 317s Setting up autopkgtest-satdep (0) ... 317s Processing triggers for man-db (2.12.0-3) ... 318s Processing triggers for libc-bin (2.39-0ubuntu6) ... 321s (Reading database ... 72633 files and directories currently installed.) 321s Removing autopkgtest-satdep (0) ... 321s autopkgtest [15:54:17]: test run-unit-test: [----------------------- 321s Test 1 -- calDepth 321s ref 7 1 321s ref 8 1 321s ref 9 3 321s ref 10 3 321s ref 11 3 321s ref 12 3 321s ref 13 3 321s ref 14 3 321s ref 15 2 321s ref 16 3 321s ref 17 3 321s ref 18 3 321s ref 19 2 321s ref 20 2 321s ref 21 2 321s ref 22 2 321s ref 23 1 321s ref 24 1 321s ref 25 1 321s ref 26 1 321s ref 27 1 321s ref 28 1 321s ref 29 2 321s ref 30 2 321s ref 31 2 321s ref 32 2 321s ref 33 2 321s ref 34 1 321s ref 35 1 321s ref 36 1 321s ref 37 2 321s ref 38 2 321s ref 39 2 321s ref 40 2 321s ref 41 1 321s ref 42 1 321s ref 43 1 321s ref 44 1 321s ref 45 1 321s ref2 1 1 321s ref2 2 2 321s ref2 3 2 321s ref2 4 2 321s ref2 5 2 321s ref2 6 3 321s ref2 7 3 321s ref2 8 3 321s ref2 9 3 321s ref2 10 4 321s ref2 11 4 321s ref2 12 5 321s ref2 13 5 321s ref2 14 6 321s ref2 15 6 321s ref2 16 6 321s ref2 17 6 321s ref2 18 6 321s ref2 19 6 321s ref2 20 6 321s ref2 21 5 321s ref2 22 5 321s ref2 23 4 321s ref2 24 4 321s ref2 25 4 321s ref2 26 4 321s ref2 27 4 321s ref2 28 3 321s ref2 29 3 321s ref2 30 3 321s ref2 31 3 321s ref2 32 3 321s ref2 33 3 321s ref2 34 3 321s ref2 35 2 321s ref2 36 1 321s =============== PASS ================ 321s Test 2 -- chk_indel 321s =============== PASS ================ 321s Test 3 -- bam2bed 321s ref 6 22 r001 30 + 321s ref 8 18 r002 30 + 321s ref 8 14 r003 30 + 321s ref 15 40 r004 30 + 321s ref 28 33 r003 30 - 321s ref 36 45 r001 30 - 321s ref2 0 20 x1 30 + 321s ref2 1 22 x2 30 + 321s ref2 5 27 x3 30 + 321s ref2 9 34 x4 30 + 321s ref2 11 35 x5 30 + 321s ref2 13 36 x6 30 + 321s =============== PASS ================ 322s autopkgtest [15:54:18]: test run-unit-test: -----------------------] 322s run-unit-test PASS 322s autopkgtest [15:54:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 323s autopkgtest [15:54:19]: @@@@@@@@@@@@@@@@@@@@ summary 323s run-unit-test PASS 333s Creating nova instance adt-noble-ppc64el-samtools-legacy-20240323-154856-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...