0s autopkgtest [15:48:56]: starting date and time: 2024-03-23 15:48:56+0000 0s autopkgtest [15:48:56]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:48:56]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u7fia93j/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade samblaster --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-15.secgroup --name adt-noble-ppc64el-samblaster-20240323-154856-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 114s autopkgtest [15:50:50]: testbed dpkg architecture: ppc64el 114s autopkgtest [15:50:50]: testbed apt version: 2.7.12 114s autopkgtest [15:50:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 115s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 115s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 116s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 116s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 116s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 116s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 116s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 116s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 116s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 116s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 117s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 117s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 117s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 120s Fetched 9623 kB in 3s (3724 kB/s) 120s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Calculating upgrade... 123s The following packages will be REMOVED: 123s libssl3 123s The following NEW packages will be installed: 123s libssl3t64 123s The following packages have been kept back: 123s curl 123s The following packages will be upgraded: 123s openssl 123s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 123s Need to get 3151 kB of archives. 123s After this operation, 73.7 kB of additional disk space will be used. 123s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 123s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 124s Fetched 3151 kB in 1s (4285 kB/s) 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 124s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 124s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 124s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 124s wget depends on libssl3 (>= 3.0.0). 124s tnftp depends on libssl3 (>= 3.0.0). 124s tcpdump depends on libssl3 (>= 3.0.0). 124s systemd-resolved depends on libssl3 (>= 3.0.0). 124s systemd depends on libssl3 (>= 3.0.0). 124s sudo depends on libssl3 (>= 3.0.0). 124s rsync depends on libssl3 (>= 3.0.0). 124s python3-cryptography depends on libssl3 (>= 3.0.0). 124s openssh-server depends on libssl3 (>= 3.0.10). 124s openssh-client depends on libssl3 (>= 3.0.10). 124s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 124s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 124s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 124s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 124s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 124s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 124s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 124s libnvme1 depends on libssl3 (>= 3.0.0). 124s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 124s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 124s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 124s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 124s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 124s kmod depends on libssl3 (>= 3.0.0). 124s dhcpcd-base depends on libssl3 (>= 3.0.0). 124s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 124s 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 124s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 124s Selecting previously unselected package libssl3t64:ppc64el. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 124s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 124s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 124s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 124s Setting up openssl (3.0.13-0ubuntu2) ... 124s Processing triggers for man-db (2.12.0-3) ... 125s Processing triggers for libc-bin (2.39-0ubuntu6) ... 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 126s sh: Attempting to set up Debian/Ubuntu apt sources automatically 126s sh: Distribution appears to be Ubuntu 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s eatmydata is already the newest version (131-1). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s dbus is already the newest version (1.14.10-4ubuntu1). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 128s rng-tools-debian is already the newest version (2.4). 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s The following packages will be REMOVED: 128s cloud-init* python3-configobj* python3-debconf* 128s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 128s After this operation, 3256 kB disk space will be freed. 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 128s Removing cloud-init (24.1.2-0ubuntu1) ... 129s Removing python3-configobj (5.0.8-3) ... 129s Removing python3-debconf (1.5.86) ... 129s Processing triggers for man-db (2.12.0-3) ... 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 129s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 130s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 130s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 130s invoke-rc.d: policy-rc.d denied execution of try-restart. 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s linux-generic is already the newest version (6.8.0-11.11+1). 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 131s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 131s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 133s Reading package lists... 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s Calculating upgrade... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s autopkgtest [15:51:10]: rebooting testbed after setup commands that affected boot 300s autopkgtest [15:53:56]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 302s autopkgtest [15:53:58]: @@@@@@@@@@@@@@@@@@@@ apt-source samblaster 304s Get:1 http://ftpmaster.internal/ubuntu noble/universe samblaster 0.1.26-4 (dsc) [2029 B] 304s Get:2 http://ftpmaster.internal/ubuntu noble/universe samblaster 0.1.26-4 (tar) [133 kB] 304s Get:3 http://ftpmaster.internal/ubuntu noble/universe samblaster 0.1.26-4 (diff) [5256 B] 304s gpgv: Signature made Tue Dec 6 14:37:10 2022 UTC 304s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 304s gpgv: issuer "tille@debian.org" 304s gpgv: Can't check signature: No public key 304s dpkg-source: warning: cannot verify inline signature for ./samblaster_0.1.26-4.dsc: no acceptable signature found 304s autopkgtest [15:54:00]: testing package samblaster version 0.1.26-4 304s autopkgtest [15:54:00]: build not needed 304s autopkgtest [15:54:00]: test run-unit-test: preparing testbed 317s Reading package lists... 317s Building dependency tree... 317s Reading state information... 317s Starting pkgProblemResolver with broken count: 0 317s Starting 2 pkgProblemResolver with broken count: 0 317s Done 318s The following additional packages will be installed: 318s libdeflate0 libhts3 libhtscodecs2 samblaster samtools 318s Suggested packages: 318s cwltool 318s The following NEW packages will be installed: 318s autopkgtest-satdep libdeflate0 libhts3 libhtscodecs2 samblaster samtools 318s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 318s Need to get 1421 kB/1421 kB of archives. 318s After this operation, 4048 kB of additional disk space will be used. 318s Get:1 /tmp/autopkgtest.FQZium/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 318s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 318s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 318s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 318s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el samblaster ppc64el 0.1.26-4 [27.4 kB] 318s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools ppc64el 1.19.2-1 [669 kB] 318s Fetched 1421 kB in 1s (2339 kB/s) 318s Selecting previously unselected package libdeflate0:ppc64el. 319s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 319s Preparing to unpack .../0-libdeflate0_1.19-1_ppc64el.deb ... 319s Unpacking libdeflate0:ppc64el (1.19-1) ... 319s Selecting previously unselected package libhtscodecs2:ppc64el. 319s Preparing to unpack .../1-libhtscodecs2_1.6.0-1_ppc64el.deb ... 319s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 319s Selecting previously unselected package libhts3:ppc64el. 319s Preparing to unpack .../2-libhts3_1.18+ds-1_ppc64el.deb ... 319s Unpacking libhts3:ppc64el (1.18+ds-1) ... 319s Selecting previously unselected package samblaster. 319s Preparing to unpack .../3-samblaster_0.1.26-4_ppc64el.deb ... 319s Unpacking samblaster (0.1.26-4) ... 319s Selecting previously unselected package samtools. 319s Preparing to unpack .../4-samtools_1.19.2-1_ppc64el.deb ... 319s Unpacking samtools (1.19.2-1) ... 319s Selecting previously unselected package autopkgtest-satdep. 319s Preparing to unpack .../5-1-autopkgtest-satdep.deb ... 319s Unpacking autopkgtest-satdep (0) ... 319s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 319s Setting up samblaster (0.1.26-4) ... 319s Setting up libdeflate0:ppc64el (1.19-1) ... 319s Setting up libhts3:ppc64el (1.18+ds-1) ... 319s Setting up samtools (1.19.2-1) ... 319s Setting up autopkgtest-satdep (0) ... 319s Processing triggers for man-db (2.12.0-3) ... 319s Processing triggers for libc-bin (2.39-0ubuntu6) ... 321s (Reading database ... 69829 files and directories currently installed.) 321s Removing autopkgtest-satdep (0) ... 322s autopkgtest [15:54:18]: test run-unit-test: [----------------------- 322s samblaster: Version 0.1.26 322s samblaster: Opening read.sam for read. 322s samblaster: Opening output for write. 322s samblaster: Loaded 2 header sequence entries. 322s Unknown opcode 'P' in CIGAR string: '1S2I6M1P1I1P1I4M2I' 322s Unknown opcode 'P' in CIGAR string: '1S2I6M1P1I1P1I4M2I' 322s samblaster: Found 2 of 12 (16.667%) total read ids are marked paired yet are unmated. 322s samblaster: Please double check that input file is read-id (QNAME) grouped. 322s samblaster: Marked 0 of 12 (0.000%) total read ids as duplicates using 2048k memory in 0.000S CPU seconds and 0S wall time. 322s PASS Test 322s autopkgtest [15:54:18]: test run-unit-test: -----------------------] 323s autopkgtest [15:54:19]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 323s run-unit-test PASS 323s autopkgtest [15:54:19]: @@@@@@@@@@@@@@@@@@@@ summary 323s run-unit-test PASS 336s Creating nova instance adt-noble-ppc64el-samblaster-20240323-154856-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...