0s autopkgtest [18:37:38]: starting date and time: 2024-03-18 18:37:38+0000 0s autopkgtest [18:37:38]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [18:37:38]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.l6h9xwkr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ncbi-blast+,src:mbedtls --apt-upgrade ruby-crb-blast --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ncbi-blast+/2.12.0+ds-4build1 mbedtls/2.28.7-1.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-12.secgroup --name adt-noble-ppc64el-ruby-crb-blast-20240318-183737-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 222s autopkgtest [18:41:20]: testbed dpkg architecture: ppc64el 223s autopkgtest [18:41:21]: testbed apt version: 2.7.12 223s autopkgtest [18:41:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 224s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 224s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3720 kB] 224s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB] 224s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 224s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.0 kB] 224s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [643 kB] 225s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 225s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 225s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 225s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4012 kB] 225s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 225s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [48.4 kB] 225s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 228s Fetched 9098 kB in 2s (3842 kB/s) 228s Reading package lists... 231s Reading package lists... 231s Building dependency tree... 231s Reading state information... 231s Calculating upgrade... 231s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 231s Reading package lists... 231s Building dependency tree... 231s Reading state information... 232s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 232s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 232s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 232s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 232s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 234s Reading package lists... 234s Reading package lists... 234s Building dependency tree... 234s Reading state information... 234s Calculating upgrade... 234s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 234s Reading package lists... 234s Building dependency tree... 234s Reading state information... 234s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 237s autopkgtest [18:41:35]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 237s autopkgtest [18:41:35]: @@@@@@@@@@@@@@@@@@@@ apt-source ruby-crb-blast 239s Get:1 http://ftpmaster.internal/ubuntu noble/universe ruby-crb-blast 0.6.9-5 (dsc) [2166 B] 239s Get:2 http://ftpmaster.internal/ubuntu noble/universe ruby-crb-blast 0.6.9-5 (tar) [37.2 kB] 239s Get:3 http://ftpmaster.internal/ubuntu noble/universe ruby-crb-blast 0.6.9-5 (diff) [5740 B] 239s gpgv: Signature made Mon Aug 21 21:53:37 2023 UTC 239s gpgv: using RSA key 8ED6C3F8BAC9DB7FC130A870F823A2729883C97C 239s gpgv: issuer "kanashiro@debian.org" 239s gpgv: Can't check signature: No public key 239s dpkg-source: warning: cannot verify inline signature for ./ruby-crb-blast_0.6.9-5.dsc: no acceptable signature found 240s autopkgtest [18:41:38]: testing package ruby-crb-blast version 0.6.9-5 240s autopkgtest [18:41:38]: build not needed 240s autopkgtest [18:41:38]: test gem2deb-test-runner: preparing testbed 242s Reading package lists... 242s Building dependency tree... 242s Reading state information... 242s Starting pkgProblemResolver with broken count: 0 242s Starting 2 pkgProblemResolver with broken count: 0 242s Done 242s The following additional packages will be installed: 242s gem2deb-test-runner help2man libgomp1 libmbedcrypto7t64 libmbedtls14t64 242s libmbedx509-1t64 libruby libruby3.1 ncbi-blast+ ncbi-data rake ruby 242s ruby-activesupport ruby-bio ruby-concurrent ruby-crb-blast ruby-facade 242s ruby-fixwhich ruby-i18n ruby-net-telnet ruby-pathname2 ruby-rubygems 242s ruby-sdbm ruby-shoulda ruby-shoulda-context ruby-shoulda-matchers 242s ruby-threach ruby-trollop ruby-tzinfo ruby-webrick ruby-xmlrpc ruby-zeitwerk 242s ruby3.1 rubygems-integration 242s Suggested packages: 242s ri ruby-dev clustalw emboss bundler 242s Recommended packages: 242s zip blast2 hmmer mafft muscle probcons sim4 t-coffee fonts-lato libjs-jquery 242s The following NEW packages will be installed: 242s autopkgtest-satdep gem2deb-test-runner help2man libgomp1 libmbedcrypto7t64 242s libmbedtls14t64 libmbedx509-1t64 libruby libruby3.1 ncbi-blast+ ncbi-data 242s rake ruby ruby-activesupport ruby-bio ruby-concurrent ruby-crb-blast 242s ruby-facade ruby-fixwhich ruby-i18n ruby-net-telnet ruby-pathname2 242s ruby-rubygems ruby-sdbm ruby-shoulda ruby-shoulda-context 242s ruby-shoulda-matchers ruby-threach ruby-trollop ruby-tzinfo ruby-webrick 242s ruby-xmlrpc ruby-zeitwerk ruby3.1 rubygems-integration 242s 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. 242s Need to get 26.1 MB/26.1 MB of archives. 242s After this operation, 127 MB of additional disk space will be used. 242s Get:1 /tmp/autopkgtest.oaxR46/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [784 B] 243s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el rubygems-integration all 1.18 [5336 B] 243s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby-net-telnet all 0.2.0-1 [13.3 kB] 243s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby-webrick all 1.8.1-1 [52.3 kB] 243s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby-xmlrpc all 0.3.2-2 [24.8 kB] 243s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libruby ppc64el 1:3.1+1 [4638 B] 243s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby-sdbm ppc64el 1.0.0-5build3 [22.9 kB] 243s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libruby3.1 ppc64el 3.1.2-7ubuntu4 [5560 kB] 244s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby3.1 ppc64el 3.1.2-7ubuntu4 [49.0 kB] 244s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby-rubygems all 3.4.20-1 [238 kB] 244s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el ruby ppc64el 1:3.1+1 [3464 B] 244s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el rake all 13.0.6-3 [61.6 kB] 244s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el gem2deb-test-runner ppc64el 2.2.2 [18.2 kB] 244s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el help2man ppc64el 1.49.3 [201 kB] 244s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 244s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedcrypto7t64 ppc64el 2.28.7-1.1ubuntu1 [264 kB] 244s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedx509-1t64 ppc64el 2.28.7-1.1ubuntu1 [51.8 kB] 244s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedtls14t64 ppc64el 2.28.7-1.1ubuntu1 [90.5 kB] 244s Get:19 http://ftpmaster.internal/ubuntu noble/universe ppc64el ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB] 245s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el ncbi-blast+ ppc64el 2.12.0+ds-4build1 [13.6 MB] 246s Get:21 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-concurrent all 1.1.6+dfsg-5build3 [212 kB] 246s Get:22 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-i18n all 1.14.1-1 [42.0 kB] 246s Get:23 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-tzinfo all 2.0.6-1 [55.2 kB] 246s Get:24 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-zeitwerk all 2.6.8-1 [36.0 kB] 246s Get:25 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-activesupport all 2:6.1.7.3+dfsg-3 [198 kB] 246s Get:26 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-bio all 2.0.5-1 [656 kB] 246s Get:27 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-trollop all 2.0-2.1 [14.9 kB] 246s Get:28 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-facade all 1.2.1-1 [8272 B] 246s Get:29 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-pathname2 all 1.8.2-2 [15.0 kB] 246s Get:30 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-fixwhich all 1.0.2-2 [4328 B] 246s Get:31 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-threach all 0.2.0-2 [5364 B] 246s Get:32 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-crb-blast all 0.6.9-5 [12.4 kB] 246s Get:33 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-shoulda-context all 2.0.0-2 [16.4 kB] 246s Get:34 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-shoulda-matchers all 4.3.0-2 [72.8 kB] 246s Get:35 http://ftpmaster.internal/ubuntu noble/universe ppc64el ruby-shoulda all 4.0.0-3 [5972 B] 246s Fetched 26.1 MB in 3s (7882 kB/s) 246s Selecting previously unselected package rubygems-integration. 246s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 246s Preparing to unpack .../00-rubygems-integration_1.18_all.deb ... 246s Unpacking rubygems-integration (1.18) ... 246s Selecting previously unselected package ruby-net-telnet. 246s Preparing to unpack .../01-ruby-net-telnet_0.2.0-1_all.deb ... 246s Unpacking ruby-net-telnet (0.2.0-1) ... 246s Selecting previously unselected package ruby-webrick. 246s Preparing to unpack .../02-ruby-webrick_1.8.1-1_all.deb ... 246s Unpacking ruby-webrick (1.8.1-1) ... 246s Selecting previously unselected package ruby-xmlrpc. 246s Preparing to unpack .../03-ruby-xmlrpc_0.3.2-2_all.deb ... 246s Unpacking ruby-xmlrpc (0.3.2-2) ... 246s Selecting previously unselected package libruby:ppc64el. 246s Preparing to unpack .../04-libruby_1%3a3.1+1_ppc64el.deb ... 246s Unpacking libruby:ppc64el (1:3.1+1) ... 246s Selecting previously unselected package ruby-sdbm:ppc64el. 246s Preparing to unpack .../05-ruby-sdbm_1.0.0-5build3_ppc64el.deb ... 246s Unpacking ruby-sdbm:ppc64el (1.0.0-5build3) ... 246s Selecting previously unselected package libruby3.1:ppc64el. 246s Preparing to unpack .../06-libruby3.1_3.1.2-7ubuntu4_ppc64el.deb ... 246s Unpacking libruby3.1:ppc64el (3.1.2-7ubuntu4) ... 247s Selecting previously unselected package ruby3.1. 247s Preparing to unpack .../07-ruby3.1_3.1.2-7ubuntu4_ppc64el.deb ... 247s Unpacking ruby3.1 (3.1.2-7ubuntu4) ... 247s Selecting previously unselected package ruby-rubygems. 247s Preparing to unpack .../08-ruby-rubygems_3.4.20-1_all.deb ... 247s Unpacking ruby-rubygems (3.4.20-1) ... 247s Selecting previously unselected package ruby. 247s Preparing to unpack .../09-ruby_1%3a3.1+1_ppc64el.deb ... 247s Unpacking ruby (1:3.1+1) ... 247s Selecting previously unselected package rake. 247s Preparing to unpack .../10-rake_13.0.6-3_all.deb ... 247s Unpacking rake (13.0.6-3) ... 247s Selecting previously unselected package gem2deb-test-runner. 247s Preparing to unpack .../11-gem2deb-test-runner_2.2.2_ppc64el.deb ... 247s Unpacking gem2deb-test-runner (2.2.2) ... 247s Selecting previously unselected package help2man. 247s Preparing to unpack .../12-help2man_1.49.3_ppc64el.deb ... 247s Unpacking help2man (1.49.3) ... 247s Selecting previously unselected package libgomp1:ppc64el. 247s Preparing to unpack .../13-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 247s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 247s Selecting previously unselected package libmbedcrypto7t64:ppc64el. 247s Preparing to unpack .../14-libmbedcrypto7t64_2.28.7-1.1ubuntu1_ppc64el.deb ... 247s Unpacking libmbedcrypto7t64:ppc64el (2.28.7-1.1ubuntu1) ... 247s Selecting previously unselected package libmbedx509-1t64:ppc64el. 247s Preparing to unpack .../15-libmbedx509-1t64_2.28.7-1.1ubuntu1_ppc64el.deb ... 247s Unpacking libmbedx509-1t64:ppc64el (2.28.7-1.1ubuntu1) ... 247s Selecting previously unselected package libmbedtls14t64:ppc64el. 247s Preparing to unpack .../16-libmbedtls14t64_2.28.7-1.1ubuntu1_ppc64el.deb ... 247s Unpacking libmbedtls14t64:ppc64el (2.28.7-1.1ubuntu1) ... 247s Selecting previously unselected package ncbi-data. 247s Preparing to unpack .../17-ncbi-data_6.1.20170106+dfsg1-10_all.deb ... 247s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ... 247s Selecting previously unselected package ncbi-blast+. 247s Preparing to unpack .../18-ncbi-blast+_2.12.0+ds-4build1_ppc64el.deb ... 247s Unpacking ncbi-blast+ (2.12.0+ds-4build1) ... 248s Selecting previously unselected package ruby-concurrent. 248s Preparing to unpack .../19-ruby-concurrent_1.1.6+dfsg-5build3_all.deb ... 248s Unpacking ruby-concurrent (1.1.6+dfsg-5build3) ... 248s Selecting previously unselected package ruby-i18n. 248s Preparing to unpack .../20-ruby-i18n_1.14.1-1_all.deb ... 248s Unpacking ruby-i18n (1.14.1-1) ... 248s Selecting previously unselected package ruby-tzinfo. 248s Preparing to unpack .../21-ruby-tzinfo_2.0.6-1_all.deb ... 248s Unpacking ruby-tzinfo (2.0.6-1) ... 248s Selecting previously unselected package ruby-zeitwerk. 248s Preparing to unpack .../22-ruby-zeitwerk_2.6.8-1_all.deb ... 248s Unpacking ruby-zeitwerk (2.6.8-1) ... 248s Selecting previously unselected package ruby-activesupport. 248s Preparing to unpack .../23-ruby-activesupport_2%3a6.1.7.3+dfsg-3_all.deb ... 248s Unpacking ruby-activesupport (2:6.1.7.3+dfsg-3) ... 248s Selecting previously unselected package ruby-bio. 248s Preparing to unpack .../24-ruby-bio_2.0.5-1_all.deb ... 248s Unpacking ruby-bio (2.0.5-1) ... 248s Selecting previously unselected package ruby-trollop. 248s Preparing to unpack .../25-ruby-trollop_2.0-2.1_all.deb ... 248s Unpacking ruby-trollop (2.0-2.1) ... 248s Selecting previously unselected package ruby-facade. 248s Preparing to unpack .../26-ruby-facade_1.2.1-1_all.deb ... 248s Unpacking ruby-facade (1.2.1-1) ... 248s Selecting previously unselected package ruby-pathname2. 248s Preparing to unpack .../27-ruby-pathname2_1.8.2-2_all.deb ... 248s Unpacking ruby-pathname2 (1.8.2-2) ... 248s Selecting previously unselected package ruby-fixwhich. 248s Preparing to unpack .../28-ruby-fixwhich_1.0.2-2_all.deb ... 248s Unpacking ruby-fixwhich (1.0.2-2) ... 248s Selecting previously unselected package ruby-threach. 248s Preparing to unpack .../29-ruby-threach_0.2.0-2_all.deb ... 248s Unpacking ruby-threach (0.2.0-2) ... 248s Selecting previously unselected package ruby-crb-blast. 248s Preparing to unpack .../30-ruby-crb-blast_0.6.9-5_all.deb ... 248s Unpacking ruby-crb-blast (0.6.9-5) ... 248s Selecting previously unselected package ruby-shoulda-context. 248s Preparing to unpack .../31-ruby-shoulda-context_2.0.0-2_all.deb ... 248s Unpacking ruby-shoulda-context (2.0.0-2) ... 248s Selecting previously unselected package ruby-shoulda-matchers. 248s Preparing to unpack .../32-ruby-shoulda-matchers_4.3.0-2_all.deb ... 248s Unpacking ruby-shoulda-matchers (4.3.0-2) ... 248s Selecting previously unselected package ruby-shoulda. 248s Preparing to unpack .../33-ruby-shoulda_4.0.0-3_all.deb ... 248s Unpacking ruby-shoulda (4.0.0-3) ... 248s Selecting previously unselected package autopkgtest-satdep. 248s Preparing to unpack .../34-1-autopkgtest-satdep.deb ... 248s Unpacking autopkgtest-satdep (0) ... 248s Setting up ncbi-data (6.1.20170106+dfsg1-10) ... 248s Setting up ruby-facade (1.2.1-1) ... 248s Setting up libmbedcrypto7t64:ppc64el (2.28.7-1.1ubuntu1) ... 248s Setting up rubygems-integration (1.18) ... 248s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ... 248s Setting up ruby-concurrent (1.1.6+dfsg-5build3) ... 248s Setting up help2man (1.49.3) ... 248s Setting up ruby-net-telnet (0.2.0-1) ... 248s Setting up ruby-i18n (1.14.1-1) ... 248s Setting up ruby-webrick (1.8.1-1) ... 248s Setting up ruby-pathname2 (1.8.2-2) ... 248s Setting up ruby-xmlrpc (0.3.2-2) ... 248s Setting up ruby-zeitwerk (2.6.8-1) ... 248s Setting up ruby-bio (2.0.5-1) ... 248s Setting up libmbedx509-1t64:ppc64el (2.28.7-1.1ubuntu1) ... 248s Setting up ruby-tzinfo (2.0.6-1) ... 248s Setting up libmbedtls14t64:ppc64el (2.28.7-1.1ubuntu1) ... 248s Setting up ncbi-blast+ (2.12.0+ds-4build1) ... 248s Setting up rake (13.0.6-3) ... 248s Setting up libruby3.1:ppc64el (3.1.2-7ubuntu4) ... 248s Setting up libruby:ppc64el (1:3.1+1) ... 248s Setting up ruby-rubygems (3.4.20-1) ... 248s Setting up ruby3.1 (3.1.2-7ubuntu4) ... 248s Setting up ruby-sdbm:ppc64el (1.0.0-5build3) ... 248s Setting up ruby (1:3.1+1) ... 248s Setting up ruby-threach (0.2.0-2) ... 248s Setting up ruby-fixwhich (1.0.2-2) ... 248s Setting up ruby-activesupport (2:6.1.7.3+dfsg-3) ... 248s Setting up ruby-shoulda-context (2.0.0-2) ... 248s Setting up ruby-trollop (2.0-2.1) ... 248s Setting up gem2deb-test-runner (2.2.2) ... 248s Setting up ruby-crb-blast (0.6.9-5) ... 248s Setting up ruby-shoulda-matchers (4.3.0-2) ... 248s Setting up ruby-shoulda (4.0.0-3) ... 248s Setting up autopkgtest-satdep (0) ... 248s Processing triggers for libc-bin (2.39-0ubuntu2) ... 248s Processing triggers for man-db (2.12.0-3) ... 249s Processing triggers for install-info (7.1-3) ... 252s (Reading database ... 74644 files and directories currently installed.) 252s Removing autopkgtest-satdep (0) ... 253s autopkgtest [18:41:51]: test gem2deb-test-runner: gem2deb-test-runner --autopkgtest --check-dependencies 2>&1 253s autopkgtest [18:41:51]: test gem2deb-test-runner: [----------------------- 253s 253s ┌──────────────────────────────────────────────────────────────────────────────┐ 253s │ Checking Rubygems dependency resolution on ruby3.1 │ 253s └──────────────────────────────────────────────────────────────────────────────┘ 253s 253s RUBYLIB=. GEM_PATH= ruby3.1 -e gem\ \"crb-blast\" 253s mv lib ./.gem2deb.lib 253s mv ./.gem2deb.lib lib 253s 253s ┌──────────────────────────────────────────────────────────────────────────────┐ 253s │ Run tests for ruby3.1 from debian/ruby-tests.rake │ 253s └──────────────────────────────────────────────────────────────────────────────┘ 253s 253s RUBYLIB=. GEM_PATH= ruby3.1 -S rake --rakelibdir /gem2deb-nonexistent -f debian/ruby-tests.rake 253s mv lib ./.gem2deb.lib 253s /usr/bin/ruby3.1 -w -I"test" /usr/lib/ruby/gems/3.1.0/gems/rake-13.0.6/lib/rake/rake_test_loader.rb "test/test_test.rb" "test/test_bin.rb" "test/test_test.rb" "test/test_test2.rb" "test/test_test3.rb" -v 253s /usr/lib/ruby/vendor_ruby/fixwhich.rb:3: warning: assigned but unused variable - e 253s /usr/lib/ruby/vendor_ruby/pathname2.rb:211: warning: method redefined; discarding old children 253s /usr/share/rubygems-integration/all/gems/facade-1.2.1/lib/facade.rb:40: warning: previous definition of children was here 253s /usr/lib/ruby/vendor_ruby/threach.rb:7: warning: `*' interpreted as argument prefix 253s /tmp/autopkgtest.oaxR46/build.Ve8/src/test/test_test3.rb:29: warning: assigned but unused variable - blaster 253s /tmp/autopkgtest.oaxR46/build.Ve8/src/test/test_test3.rb:45: warning: assigned but unused variable - dbs 253s /tmp/autopkgtest.oaxR46/build.Ve8/src/test/test_test3.rb:46: warning: assigned but unused variable - run 253s /tmp/autopkgtest.oaxR46/build.Ve8/src/test/test_test3.rb:47: warning: assigned but unused variable - load 253s Loaded suite /usr/lib/ruby/gems/3.1.0/gems/rake-13.0.6/lib/rake/rake_test_loader 253s Started 253s Test2CRBBlast: 254s test: crb-blast should add secondary hits. : .: (0.255059) 254s test: crb-blast should break input file into no more pieces than there are sequences. : .: (0.286404) 254s test: crb-blast should break input file into pieces. :.: (0.250506) 255s test: crb-blast should find reciprocals. : .: (0.311007) 255s test: crb-blast should get non reciprocal hits. : .: (0.295081) 255s test: crb-blast should load output should check if the databases exist. : .: (0.282288) 255s test: crb-blast should run blast should check if the databases exist yet. : .: (0.286856) 256s test: crb-blast should setup2 should run ok. : .: (0.277828) 256s Test3CRBBlast: 256s test: crb-blast should raise error when files don't exist. : .: (0.001296) 256s test: crb-blast should run. : .: (0.368400) 256s test: crb-blast should work for query sequences with pipes. : .: (0.219586) 256s TestBinary: 256s test: crb-blast should run binary. : .: (0.139990) 256s TestCRBBlast: 257s test: crb-blast should check if contig has reciprocal hit. : .: (0.321531) 257s test: crb-blast should determine that the target is a protein sequence. : .: (0.325202) 257s test: crb-blast should find reciprocals. : .: (0.323995) 258s test: crb-blast should get number of reciprocals. : .: (0.325674) 258s test: crb-blast should get query results. : .: (0.318742) 258s test: crb-blast should load outputs. : .: (0.315549) 259s test: crb-blast should not find fake scaffold name. : .: (0.319573) 259s test: crb-blast should output all reciprocal hits. : .: (0.324310) 259s test: crb-blast should run blast. : .: (0.324909) 260s test: crb-blast should setup should run ok. : .: (0.312799) 260s 260s Finished in 6.191107149 seconds. 260s ------------------------------------------------------------------------------- 260s 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 260s 100% passed 260s ------------------------------------------------------------------------------- 260s 3.55 tests/s, 6.78 assertions/s 260s mv ./.gem2deb.lib lib 260s autopkgtest [18:41:58]: test gem2deb-test-runner: -----------------------] 260s autopkgtest [18:41:58]: test gem2deb-test-runner: - - - - - - - - - - results - - - - - - - - - - 260s gem2deb-test-runner PASS 261s autopkgtest [18:41:59]: @@@@@@@@@@@@@@@@@@@@ summary 261s gem2deb-test-runner PASS 276s Creating nova instance adt-noble-ppc64el-ruby-crb-blast-20240318-183737-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240316.img (UUID 1492b190-05c5-462d-b1de-84bc330afe32)...