0s autopkgtest [18:37:33]: starting date and time: 2024-03-18 18:37:33+0000
  0s autopkgtest [18:37:33]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [18:37:33]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xy3jy5i6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ncbi-blast+,src:mbedtls --apt-upgrade resfinder --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ncbi-blast+/2.12.0+ds-4build1 mbedtls/2.28.7-1.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-11.secgroup --name adt-noble-ppc64el-resfinder-20240318-183732-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
195s autopkgtest [18:40:48]: testbed dpkg architecture: ppc64el
195s autopkgtest [18:40:48]: testbed apt version: 2.7.12
195s autopkgtest [18:40:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup
196s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
196s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3720 kB]
197s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
197s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.0 kB]
197s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB]
197s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [643 kB]
197s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
197s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
197s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
197s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4012 kB]
197s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
197s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [48.4 kB]
197s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
201s Fetched 9098 kB in 2s (3738 kB/s)
201s Reading package lists...
203s Reading package lists...
204s Building dependency tree...
204s Reading state information...
204s Calculating upgrade...
204s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
204s Reading package lists...
204s Building dependency tree...
204s Reading state information...
205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
205s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
205s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
205s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
205s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
207s Reading package lists...
207s Reading package lists...
207s Building dependency tree...
207s Reading state information...
207s Calculating upgrade...
207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
207s Reading package lists...
207s Building dependency tree...
207s Reading state information...
208s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
211s autopkgtest [18:41:04]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024
211s autopkgtest [18:41:04]: @@@@@@@@@@@@@@@@@@@@ apt-source resfinder
213s Get:1 http://ftpmaster.internal/ubuntu noble/universe resfinder 4.4.2-1 (dsc) [2539 B]
213s Get:2 http://ftpmaster.internal/ubuntu noble/universe resfinder 4.4.2-1 (tar) [89.1 kB]
213s Get:3 http://ftpmaster.internal/ubuntu noble/universe resfinder 4.4.2-1 (tar) [359 kB]
213s Get:4 http://ftpmaster.internal/ubuntu noble/universe resfinder 4.4.2-1 (diff) [8332 B]
213s gpgv: Signature made Tue Jan 16 07:05:55 2024 UTC
213s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
213s gpgv:                issuer "tille@debian.org"
213s gpgv: Can't check signature: No public key
213s dpkg-source: warning: cannot verify inline signature for ./resfinder_4.4.2-1.dsc: no acceptable signature found
213s autopkgtest [18:41:06]: testing package resfinder version 4.4.2-1
214s autopkgtest [18:41:07]: build not needed
219s autopkgtest [18:41:12]: test run-unit-test: preparing testbed
220s Reading package lists...
220s Building dependency tree...
220s Reading state information...
221s Starting pkgProblemResolver with broken count: 0
221s Starting 2 pkgProblemResolver with broken count: 0
221s Done
221s The following additional packages will be installed:
221s   fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono
221s   fonts-urw-base35 git git-man kma libblas3 libcairo2 libdeflate0
221s   liberror-perl libfontconfig1 libfontenc1 libgfortran5 libgomp1
221s   libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
221s   liblapack3 liblcms2-2 liblerc4 libmbedcrypto7t64 libmbedtls14t64
221s   libmbedx509-1t64 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6
221s   libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1
221s   ncbi-blast+ ncbi-blast+-legacy ncbi-data python3-biopython python3-cairo
221s   python3-cgecore python3-cgelib python3-dateutil python3-freetype python3-git
221s   python3-gitdb python3-numpy python3-pandas python3-pandas-lib python3-pil
221s   python3-reportlab python3-rlpycairo python3-smmap python3-tabulate resfinder
221s   resfinder-db resfinder-example sgml-base w3c-sgml-lib x11-common
221s   xfonts-encodings xfonts-utils xml-core
221s Suggested packages:
221s   fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre git-daemon-run
221s   | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs
221s   git-mediawiki git-svn liblcms2-utils python3-tk bwa clustalo clustalw
221s   dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons
221s   python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib
221s   python3-psycopg2 python3-scipy raxml samtools t-coffee wise python-git-doc
221s   gcc gfortran python3-dev python3-pytest python-pandas-doc
221s   python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools
221s   python-reportlab-doc rl-accel rl-renderpm sgml-base-doc debhelper
221s Recommended packages:
221s   python-biopython-doc python3-scipy python3-matplotlib python3-bottleneck
221s   python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib
221s   python3-lxml python3-tables python3-olefile
221s The following NEW packages will be installed:
221s   autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-extra
221s   fonts-dejavu-mono fonts-urw-base35 git git-man kma libblas3 libcairo2
221s   libdeflate0 liberror-perl libfontconfig1 libfontenc1 libgfortran5 libgomp1
221s   libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
221s   liblapack3 liblcms2-2 liblerc4 libmbedcrypto7t64 libmbedtls14t64
221s   libmbedx509-1t64 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6
221s   libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1
221s   ncbi-blast+ ncbi-blast+-legacy ncbi-data python3-biopython python3-cairo
221s   python3-cgecore python3-cgelib python3-dateutil python3-freetype python3-git
221s   python3-gitdb python3-numpy python3-pandas python3-pandas-lib python3-pil
221s   python3-reportlab python3-rlpycairo python3-smmap python3-tabulate resfinder
221s   resfinder-db resfinder-example sgml-base w3c-sgml-lib x11-common
221s   xfonts-encodings xfonts-utils xml-core
221s 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded.
221s Need to get 80.4 MB/80.4 MB of archives.
221s After this operation, 405 MB of additional disk space will be used.
221s Get:1 /tmp/autopkgtest.NKbOfI/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [748 B]
221s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el sgml-base all 1.31 [11.4 kB]
221s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
222s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
222s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontenc1 ppc64el 1:1.1.8-1 [15.7 kB]
222s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB]
222s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
222s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-utils ppc64el 1:7.7+6build2 [112 kB]
222s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
222s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB]
222s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-extra all 2.37-8 [1947 kB]
222s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el liberror-perl all 0.17029-2 [25.6 kB]
222s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el git-man all 1:2.43.0-1ubuntu1 [1100 kB]
222s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el git ppc64el 1:2.43.0-1ubuntu1 [4748 kB]
222s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el kma ppc64el 1.4.14-2 [270 kB]
222s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB]
222s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB]
222s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB]
222s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB]
222s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B]
222s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB]
222s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB]
222s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
222s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB]
222s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB]
222s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB]
222s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB]
222s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB]
222s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB]
222s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
222s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB]
223s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB]
223s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB]
223s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedcrypto7t64 ppc64el 2.28.7-1.1ubuntu1 [264 kB]
223s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedx509-1t64 ppc64el 2.28.7-1.1ubuntu1 [51.8 kB]
223s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedtls14t64 ppc64el 2.28.7-1.1ubuntu1 [90.5 kB]
223s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB]
223s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB]
223s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB]
223s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB]
223s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB]
223s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB]
223s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB]
223s Get:44 http://ftpmaster.internal/ubuntu noble/universe ppc64el ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB]
223s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el ncbi-blast+ ppc64el 2.12.0+ds-4build1 [13.6 MB]
223s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el ncbi-blast+-legacy all 2.12.0+ds-4build1 [4990 B]
223s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB]
223s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB]
223s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB]
223s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-cairo ppc64el 1.25.1-2 [162 kB]
223s Get:51 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-freetype all 2.4.0-1 [83.1 kB]
223s Get:52 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
223s Get:53 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-reportlab all 4.1.0-1 [683 kB]
223s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el xml-core all 0.19 [20.3 kB]
223s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
223s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biopython ppc64el 1.81+dfsg-3 [1738 kB]
223s Get:57 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cgecore all 1.5.6+ds-1 [28.8 kB]
223s Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB]
223s Get:59 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-smmap all 6.0.0-1 [20.5 kB]
223s Get:60 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-gitdb all 4.0.11-1 [46.2 kB]
223s Get:61 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-git all 3.1.37-3 [138 kB]
223s Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB]
224s Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB]
224s Get:64 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cgelib all 0.7.3-3 [48.2 kB]
224s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-tabulate all 0.8.10-1 [38.2 kB]
224s Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el resfinder-db all 0.0+git20220524.fa32d9a-1 [11.3 MB]
224s Get:67 http://ftpmaster.internal/ubuntu noble/universe ppc64el resfinder all 4.4.2-1 [66.5 kB]
224s Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el resfinder-example all 4.4.2-1 [572 kB]
225s Fetched 80.4 MB in 3s (25.2 MB/s)
225s Selecting previously unselected package sgml-base.
225s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70095 files and directories currently installed.)
225s Preparing to unpack .../00-sgml-base_1.31_all.deb ...
225s Unpacking sgml-base (1.31) ...
225s Selecting previously unselected package fonts-dejavu-mono.
225s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
225s Unpacking fonts-dejavu-mono (2.37-8) ...
225s Selecting previously unselected package fonts-dejavu-core.
225s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
225s Unpacking fonts-dejavu-core (2.37-8) ...
225s Selecting previously unselected package libfontenc1:ppc64el.
225s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1_ppc64el.deb ...
225s Unpacking libfontenc1:ppc64el (1:1.1.8-1) ...
225s Selecting previously unselected package x11-common.
225s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu2_all.deb ...
225s Unpacking x11-common (1:7.7+23ubuntu2) ...
225s Selecting previously unselected package xfonts-encodings.
225s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
225s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
225s Selecting previously unselected package xfonts-utils.
225s Preparing to unpack .../06-xfonts-utils_1%3a7.7+6build2_ppc64el.deb ...
225s Unpacking xfonts-utils (1:7.7+6build2) ...
225s Selecting previously unselected package fonts-urw-base35.
225s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ...
225s Unpacking fonts-urw-base35 (20200910-8) ...
225s Selecting previously unselected package fontconfig-config.
225s Preparing to unpack .../08-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ...
225s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
225s Selecting previously unselected package fonts-dejavu-extra.
225s Preparing to unpack .../09-fonts-dejavu-extra_2.37-8_all.deb ...
225s Unpacking fonts-dejavu-extra (2.37-8) ...
225s Selecting previously unselected package liberror-perl.
225s Preparing to unpack .../10-liberror-perl_0.17029-2_all.deb ...
225s Unpacking liberror-perl (0.17029-2) ...
225s Selecting previously unselected package git-man.
225s Preparing to unpack .../11-git-man_1%3a2.43.0-1ubuntu1_all.deb ...
225s Unpacking git-man (1:2.43.0-1ubuntu1) ...
225s Selecting previously unselected package git.
225s Preparing to unpack .../12-git_1%3a2.43.0-1ubuntu1_ppc64el.deb ...
225s Unpacking git (1:2.43.0-1ubuntu1) ...
226s Selecting previously unselected package kma.
226s Preparing to unpack .../13-kma_1.4.14-2_ppc64el.deb ...
226s Unpacking kma (1.4.14-2) ...
226s Selecting previously unselected package libblas3:ppc64el.
226s Preparing to unpack .../14-libblas3_3.12.0-3_ppc64el.deb ...
226s Unpacking libblas3:ppc64el (3.12.0-3) ...
226s Selecting previously unselected package libfontconfig1:ppc64el.
226s Preparing to unpack .../15-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ...
226s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
226s Selecting previously unselected package libpixman-1-0:ppc64el.
226s Preparing to unpack .../16-libpixman-1-0_0.42.2-1_ppc64el.deb ...
226s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ...
226s Selecting previously unselected package libxcb-render0:ppc64el.
226s Preparing to unpack .../17-libxcb-render0_1.15-1_ppc64el.deb ...
226s Unpacking libxcb-render0:ppc64el (1.15-1) ...
226s Selecting previously unselected package libxcb-shm0:ppc64el.
226s Preparing to unpack .../18-libxcb-shm0_1.15-1_ppc64el.deb ...
226s Unpacking libxcb-shm0:ppc64el (1.15-1) ...
226s Selecting previously unselected package libxrender1:ppc64el.
226s Preparing to unpack .../19-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ...
226s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ...
226s Selecting previously unselected package libcairo2:ppc64el.
226s Preparing to unpack .../20-libcairo2_1.18.0-1_ppc64el.deb ...
226s Unpacking libcairo2:ppc64el (1.18.0-1) ...
226s Selecting previously unselected package libdeflate0:ppc64el.
226s Preparing to unpack .../21-libdeflate0_1.19-1_ppc64el.deb ...
226s Unpacking libdeflate0:ppc64el (1.19-1) ...
226s Selecting previously unselected package libgfortran5:ppc64el.
226s Preparing to unpack .../22-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ...
226s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
226s Selecting previously unselected package libgomp1:ppc64el.
226s Preparing to unpack .../23-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ...
226s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ...
226s Selecting previously unselected package libgraphite2-3:ppc64el.
226s Preparing to unpack .../24-libgraphite2-3_1.3.14-2_ppc64el.deb ...
226s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ...
226s Selecting previously unselected package libharfbuzz0b:ppc64el.
226s Preparing to unpack .../25-libharfbuzz0b_8.3.0-2_ppc64el.deb ...
226s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ...
226s Selecting previously unselected package libimagequant0:ppc64el.
226s Preparing to unpack .../26-libimagequant0_2.18.0-1_ppc64el.deb ...
226s Unpacking libimagequant0:ppc64el (2.18.0-1) ...
226s Selecting previously unselected package libjpeg-turbo8:ppc64el.
226s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ...
226s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
226s Selecting previously unselected package libjpeg8:ppc64el.
226s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
226s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
226s Selecting previously unselected package liblapack3:ppc64el.
226s Preparing to unpack .../29-liblapack3_3.12.0-3_ppc64el.deb ...
226s Unpacking liblapack3:ppc64el (3.12.0-3) ...
226s Selecting previously unselected package liblcms2-2:ppc64el.
226s Preparing to unpack .../30-liblcms2-2_2.14-2_ppc64el.deb ...
226s Unpacking liblcms2-2:ppc64el (2.14-2) ...
226s Selecting previously unselected package liblerc4:ppc64el.
226s Preparing to unpack .../31-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ...
226s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
226s Selecting previously unselected package libmbedcrypto7t64:ppc64el.
226s Preparing to unpack .../32-libmbedcrypto7t64_2.28.7-1.1ubuntu1_ppc64el.deb ...
226s Unpacking libmbedcrypto7t64:ppc64el (2.28.7-1.1ubuntu1) ...
226s Selecting previously unselected package libmbedx509-1t64:ppc64el.
226s Preparing to unpack .../33-libmbedx509-1t64_2.28.7-1.1ubuntu1_ppc64el.deb ...
226s Unpacking libmbedx509-1t64:ppc64el (2.28.7-1.1ubuntu1) ...
226s Selecting previously unselected package libmbedtls14t64:ppc64el.
226s Preparing to unpack .../34-libmbedtls14t64_2.28.7-1.1ubuntu1_ppc64el.deb ...
226s Unpacking libmbedtls14t64:ppc64el (2.28.7-1.1ubuntu1) ...
226s Selecting previously unselected package libraqm0:ppc64el.
226s Preparing to unpack .../35-libraqm0_0.10.1-1_ppc64el.deb ...
226s Unpacking libraqm0:ppc64el (0.10.1-1) ...
226s Selecting previously unselected package libsharpyuv0:ppc64el.
226s Preparing to unpack .../36-libsharpyuv0_1.3.2-0.4_ppc64el.deb ...
226s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ...
226s Selecting previously unselected package libjbig0:ppc64el.
226s Preparing to unpack .../37-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ...
226s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ...
226s Selecting previously unselected package libwebp7:ppc64el.
226s Preparing to unpack .../38-libwebp7_1.3.2-0.4_ppc64el.deb ...
226s Unpacking libwebp7:ppc64el (1.3.2-0.4) ...
226s Selecting previously unselected package libtiff6:ppc64el.
226s Preparing to unpack .../39-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ...
226s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
226s Selecting previously unselected package libwebpdemux2:ppc64el.
226s Preparing to unpack .../40-libwebpdemux2_1.3.2-0.4_ppc64el.deb ...
226s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ...
226s Selecting previously unselected package libwebpmux3:ppc64el.
226s Preparing to unpack .../41-libwebpmux3_1.3.2-0.4_ppc64el.deb ...
226s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ...
226s Selecting previously unselected package ncbi-data.
226s Preparing to unpack .../42-ncbi-data_6.1.20170106+dfsg1-10_all.deb ...
226s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ...
226s Selecting previously unselected package ncbi-blast+.
226s Preparing to unpack .../43-ncbi-blast+_2.12.0+ds-4build1_ppc64el.deb ...
226s Unpacking ncbi-blast+ (2.12.0+ds-4build1) ...
227s Selecting previously unselected package ncbi-blast+-legacy.
227s Preparing to unpack .../44-ncbi-blast+-legacy_2.12.0+ds-4build1_all.deb ...
227s Unpacking ncbi-blast+-legacy (2.12.0+ds-4build1) ...
227s Selecting previously unselected package python3-numpy.
227s Preparing to unpack .../45-python3-numpy_1%3a1.24.2-2_ppc64el.deb ...
227s Unpacking python3-numpy (1:1.24.2-2) ...
227s Selecting previously unselected package libopenjp2-7:ppc64el.
227s Preparing to unpack .../46-libopenjp2-7_2.5.0-2_ppc64el.deb ...
227s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ...
227s Selecting previously unselected package python3-pil:ppc64el.
227s Preparing to unpack .../47-python3-pil_10.2.0-1_ppc64el.deb ...
227s Unpacking python3-pil:ppc64el (10.2.0-1) ...
227s Selecting previously unselected package python3-cairo.
227s Preparing to unpack .../48-python3-cairo_1.25.1-2_ppc64el.deb ...
227s Unpacking python3-cairo (1.25.1-2) ...
227s Selecting previously unselected package python3-freetype.
227s Preparing to unpack .../49-python3-freetype_2.4.0-1_all.deb ...
227s Unpacking python3-freetype (2.4.0-1) ...
227s Selecting previously unselected package python3-rlpycairo.
227s Preparing to unpack .../50-python3-rlpycairo_0.3.0-3_all.deb ...
227s Unpacking python3-rlpycairo (0.3.0-3) ...
227s Selecting previously unselected package python3-reportlab.
227s Preparing to unpack .../51-python3-reportlab_4.1.0-1_all.deb ...
227s Unpacking python3-reportlab (4.1.0-1) ...
227s Selecting previously unselected package xml-core.
227s Preparing to unpack .../52-xml-core_0.19_all.deb ...
227s Unpacking xml-core (0.19) ...
227s Selecting previously unselected package w3c-sgml-lib.
227s Preparing to unpack .../53-w3c-sgml-lib_1.3-3_all.deb ...
227s Unpacking w3c-sgml-lib (1.3-3) ...
227s Selecting previously unselected package python3-biopython.
227s Preparing to unpack .../54-python3-biopython_1.81+dfsg-3_ppc64el.deb ...
227s Unpacking python3-biopython (1.81+dfsg-3) ...
228s Selecting previously unselected package python3-cgecore.
228s Preparing to unpack .../55-python3-cgecore_1.5.6+ds-1_all.deb ...
228s Unpacking python3-cgecore (1.5.6+ds-1) ...
228s Selecting previously unselected package python3-dateutil.
228s Preparing to unpack .../56-python3-dateutil_2.8.2-3_all.deb ...
228s Unpacking python3-dateutil (2.8.2-3) ...
228s Selecting previously unselected package python3-smmap.
228s Preparing to unpack .../57-python3-smmap_6.0.0-1_all.deb ...
228s Unpacking python3-smmap (6.0.0-1) ...
228s Selecting previously unselected package python3-gitdb.
228s Preparing to unpack .../58-python3-gitdb_4.0.11-1_all.deb ...
228s Unpacking python3-gitdb (4.0.11-1) ...
228s Selecting previously unselected package python3-git.
228s Preparing to unpack .../59-python3-git_3.1.37-3_all.deb ...
228s Unpacking python3-git (3.1.37-3) ...
228s Selecting previously unselected package python3-pandas-lib:ppc64el.
228s Preparing to unpack .../60-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_ppc64el.deb ...
228s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ...
228s Selecting previously unselected package python3-pandas.
228s Preparing to unpack .../61-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ...
228s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ...
228s Selecting previously unselected package python3-cgelib.
228s Preparing to unpack .../62-python3-cgelib_0.7.3-3_all.deb ...
228s Unpacking python3-cgelib (0.7.3-3) ...
229s Selecting previously unselected package python3-tabulate.
229s Preparing to unpack .../63-python3-tabulate_0.8.10-1_all.deb ...
229s Unpacking python3-tabulate (0.8.10-1) ...
229s Selecting previously unselected package resfinder-db.
229s Preparing to unpack .../64-resfinder-db_0.0+git20220524.fa32d9a-1_all.deb ...
229s Unpacking resfinder-db (0.0+git20220524.fa32d9a-1) ...
229s Selecting previously unselected package resfinder.
229s Preparing to unpack .../65-resfinder_4.4.2-1_all.deb ...
229s Unpacking resfinder (4.4.2-1) ...
229s Selecting previously unselected package resfinder-example.
229s Preparing to unpack .../66-resfinder-example_4.4.2-1_all.deb ...
229s Unpacking resfinder-example (4.4.2-1) ...
229s Selecting previously unselected package autopkgtest-satdep.
229s Preparing to unpack .../67-1-autopkgtest-satdep.deb ...
229s Unpacking autopkgtest-satdep (0) ...
229s Setting up libgraphite2-3:ppc64el (1.3.14-2) ...
229s Setting up liblcms2-2:ppc64el (2.14-2) ...
229s Setting up ncbi-data (6.1.20170106+dfsg1-10) ...
229s Setting up libpixman-1-0:ppc64el (0.42.2-1) ...
229s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ...
229s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
229s Setting up libmbedcrypto7t64:ppc64el (2.28.7-1.1ubuntu1) ...
229s Setting up resfinder-db (0.0+git20220524.fa32d9a-1) ...
229s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ...
229s Setting up libxcb-render0:ppc64el (1.15-1) ...
229s Setting up x11-common (1:7.7+23ubuntu2) ...
230s Setting up libdeflate0:ppc64el (1.19-1) ...
230s Setting up python3-tabulate (0.8.10-1) ...
230s Setting up libxcb-shm0:ppc64el (1.15-1) ...
230s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ...
230s Setting up python3-freetype (2.4.0-1) ...
230s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ...
230s Setting up liberror-perl (0.17029-2) ...
230s Setting up libfontenc1:ppc64el (1:1.1.8-1) ...
230s Setting up libblas3:ppc64el (3.12.0-3) ...
230s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
230s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
230s Setting up libimagequant0:ppc64el (2.18.0-1) ...
230s Setting up fonts-dejavu-mono (2.37-8) ...
230s Setting up fonts-dejavu-core (2.37-8) ...
230s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
230s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
230s Setting up libwebp7:ppc64el (1.3.2-0.4) ...
230s Setting up fonts-dejavu-extra (2.37-8) ...
230s Setting up kma (1.4.14-2) ...
230s Setting up libopenjp2-7:ppc64el (2.5.0-2) ...
230s Setting up git-man (1:2.43.0-1ubuntu1) ...
230s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ...
230s Setting up python3-dateutil (2.8.2-3) ...
230s Setting up sgml-base (1.31) ...
230s Setting up resfinder-example (4.4.2-1) ...
230s Setting up libwebpmux3:ppc64el (1.3.2-0.4) ...
230s Setting up python3-smmap (6.0.0-1) ...
230s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
230s Setting up liblapack3:ppc64el (3.12.0-3) ...
230s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
230s Setting up libmbedx509-1t64:ppc64el (2.28.7-1.1ubuntu1) ...
230s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
230s Setting up libwebpdemux2:ppc64el (1.3.2-0.4) ...
230s Setting up python3-gitdb (4.0.11-1) ...
231s Setting up xfonts-utils (1:7.7+6build2) ...
231s Setting up libraqm0:ppc64el (0.10.1-1) ...
231s Setting up git (1:2.43.0-1ubuntu1) ...
231s Setting up python3-numpy (1:1.24.2-2) ...
233s Setting up libmbedtls14t64:ppc64el (2.28.7-1.1ubuntu1) ...
233s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
233s Setting up xml-core (0.19) ...
233s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
233s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ...
233s Setting up fonts-urw-base35 (20200910-8) ...
233s Setting up libcairo2:ppc64el (1.18.0-1) ...
233s Setting up ncbi-blast+ (2.12.0+ds-4build1) ...
233s Setting up python3-pil:ppc64el (10.2.0-1) ...
233s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ...
238s Setting up python3-git (3.1.37-3) ...
238s Setting up ncbi-blast+-legacy (2.12.0+ds-4build1) ...
238s Setting up python3-cairo (1.25.1-2) ...
238s Setting up python3-cgelib (0.7.3-3) ...
239s Setting up python3-rlpycairo (0.3.0-3) ...
239s Setting up python3-reportlab (4.1.0-1) ...
239s Processing triggers for libc-bin (2.39-0ubuntu2) ...
239s Processing triggers for man-db (2.12.0-3) ...
241s Processing triggers for sgml-base (1.31) ...
241s Setting up w3c-sgml-lib (1.3-3) ...
270s Setting up python3-biopython (1.81+dfsg-3) ...
272s Setting up python3-cgecore (1.5.6+ds-1) ...
272s /usr/lib/python3/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w'
272s   start = re.search("^-*(\w+)", align_query).start(1)
272s /usr/lib/python3/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w'
272s   end = re.search("\w+(-*)$", align_query).start(1)
272s /usr/lib/python3/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{'
272s   """
272s /usr/lib/python3/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w'
272s   src = re.sub('[^\w/\-\.\*]', '', src)
272s /usr/lib/python3/dist-packages/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w'
272s   dst = re.sub('[^\w/\-\.\*]', '', dst)
272s /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
272s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
272s /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
272s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
272s /usr/lib/python3/dist-packages/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w'
272s   invalid_chars = re.findall('[^\w/\-\.\*]', os.path.basename(file_))
272s /usr/lib/python3/dist-packages/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w'
272s   src = re.sub('[^\w/\-\.\*]', '', src)
272s /usr/lib/python3/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w'
272s   dst = re.sub('[^\w/\-\.\*]', '', dst)
272s /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
272s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
272s /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
272s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
272s Setting up resfinder (4.4.2-1) ...
272s Setting up autopkgtest-satdep (0) ...
276s (Reading database ... 77065 files and directories currently installed.)
276s Removing autopkgtest-satdep (0) ...
277s autopkgtest [18:42:10]: test run-unit-test: [-----------------------
277s Indexing files as needed
278s ['INSTALL.py']
278s ['INSTALL.py']
278s Running tests
283s ....
283s ----------------------------------------------------------------------
283s Ran 4 tests in 4.988s
283s 
283s OK
283s Cleanup
283s PASS
284s autopkgtest [18:42:17]: test run-unit-test: -----------------------]
284s run-unit-test        PASS
284s autopkgtest [18:42:17]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
285s autopkgtest [18:42:18]: test version-test: preparing testbed
417s autopkgtest [18:44:30]: testbed dpkg architecture: ppc64el
417s autopkgtest [18:44:30]: testbed apt version: 2.7.12
417s autopkgtest [18:44:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup
418s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
418s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.0 kB]
418s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
418s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB]
418s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3720 kB]
419s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [643 kB]
419s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
419s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
419s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
419s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4012 kB]
419s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
419s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [48.4 kB]
419s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
422s Fetched 9098 kB in 2s (3826 kB/s)
422s Reading package lists...
425s Reading package lists...
425s Building dependency tree...
425s Reading state information...
425s Calculating upgrade...
425s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
425s Reading package lists...
425s Building dependency tree...
425s Reading state information...
425s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
426s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
426s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
426s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
426s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
427s Reading package lists...
427s Reading package lists...
427s Building dependency tree...
427s Reading state information...
428s Calculating upgrade...
428s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
428s Reading package lists...
428s Building dependency tree...
428s Reading state information...
428s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
432s Reading package lists...
432s Building dependency tree...
432s Reading state information...
433s Starting pkgProblemResolver with broken count: 0
433s Starting 2 pkgProblemResolver with broken count: 0
433s Done
433s The following additional packages will be installed:
433s   fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono
433s   fonts-urw-base35 git git-man kma libblas3 libcairo2 libdeflate0
433s   liberror-perl libfontconfig1 libfontenc1 libgfortran5 libgomp1
433s   libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
433s   liblapack3 liblcms2-2 liblerc4 libmbedcrypto7t64 libmbedtls14t64
433s   libmbedx509-1t64 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6
433s   libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1
433s   ncbi-blast+ ncbi-blast+-legacy ncbi-data python3-biopython python3-cairo
433s   python3-cgecore python3-cgelib python3-dateutil python3-freetype python3-git
433s   python3-gitdb python3-numpy python3-pandas python3-pandas-lib python3-pil
433s   python3-reportlab python3-rlpycairo python3-smmap python3-tabulate resfinder
433s   resfinder-db resfinder-example sgml-base w3c-sgml-lib x11-common
433s   xfonts-encodings xfonts-utils xml-core
433s Suggested packages:
433s   fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre git-daemon-run
433s   | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs
433s   git-mediawiki git-svn liblcms2-utils python3-tk bwa clustalo clustalw
433s   dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons
433s   python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib
433s   python3-psycopg2 python3-scipy raxml samtools t-coffee wise python-git-doc
433s   gcc gfortran python3-dev python3-pytest python-pandas-doc
433s   python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools
433s   python-reportlab-doc rl-accel rl-renderpm sgml-base-doc debhelper
433s Recommended packages:
433s   python-biopython-doc python3-scipy python3-matplotlib python3-bottleneck
433s   python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib
433s   python3-lxml python3-tables python3-olefile
433s The following NEW packages will be installed:
433s   autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-extra
433s   fonts-dejavu-mono fonts-urw-base35 git git-man kma libblas3 libcairo2
433s   libdeflate0 liberror-perl libfontconfig1 libfontenc1 libgfortran5 libgomp1
433s   libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
433s   liblapack3 liblcms2-2 liblerc4 libmbedcrypto7t64 libmbedtls14t64
433s   libmbedx509-1t64 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6
433s   libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1
433s   ncbi-blast+ ncbi-blast+-legacy ncbi-data python3-biopython python3-cairo
433s   python3-cgecore python3-cgelib python3-dateutil python3-freetype python3-git
433s   python3-gitdb python3-numpy python3-pandas python3-pandas-lib python3-pil
433s   python3-reportlab python3-rlpycairo python3-smmap python3-tabulate resfinder
433s   resfinder-db resfinder-example sgml-base w3c-sgml-lib x11-common
433s   xfonts-encodings xfonts-utils xml-core
433s 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded.
433s Need to get 80.4 MB/80.4 MB of archives.
433s After this operation, 405 MB of additional disk space will be used.
433s Get:1 /tmp/autopkgtest.NKbOfI/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B]
433s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el sgml-base all 1.31 [11.4 kB]
433s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
434s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
435s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontenc1 ppc64el 1:1.1.8-1 [15.7 kB]
435s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB]
435s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
436s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-utils ppc64el 1:7.7+6build2 [112 kB]
436s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
443s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB]
443s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-extra all 2.37-8 [1947 kB]
444s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el liberror-perl all 0.17029-2 [25.6 kB]
444s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el git-man all 1:2.43.0-1ubuntu1 [1100 kB]
444s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el git ppc64el 1:2.43.0-1ubuntu1 [4748 kB]
445s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el kma ppc64el 1.4.14-2 [270 kB]
445s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB]
445s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB]
445s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB]
445s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB]
445s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B]
445s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB]
445s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB]
445s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
446s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB]
446s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB]
446s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB]
446s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB]
446s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB]
446s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB]
446s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
446s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB]
446s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB]
446s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB]
446s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedcrypto7t64 ppc64el 2.28.7-1.1ubuntu1 [264 kB]
446s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedx509-1t64 ppc64el 2.28.7-1.1ubuntu1 [51.8 kB]
446s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedtls14t64 ppc64el 2.28.7-1.1ubuntu1 [90.5 kB]
446s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB]
446s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB]
446s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB]
446s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB]
446s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB]
446s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB]
446s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB]
446s Get:44 http://ftpmaster.internal/ubuntu noble/universe ppc64el ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB]
447s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el ncbi-blast+ ppc64el 2.12.0+ds-4build1 [13.6 MB]
448s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el ncbi-blast+-legacy all 2.12.0+ds-4build1 [4990 B]
448s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB]
449s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB]
449s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB]
449s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-cairo ppc64el 1.25.1-2 [162 kB]
449s Get:51 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-freetype all 2.4.0-1 [83.1 kB]
449s Get:52 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
449s Get:53 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-reportlab all 4.1.0-1 [683 kB]
449s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el xml-core all 0.19 [20.3 kB]
449s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
449s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biopython ppc64el 1.81+dfsg-3 [1738 kB]
449s Get:57 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cgecore all 1.5.6+ds-1 [28.8 kB]
449s Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB]
449s Get:59 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-smmap all 6.0.0-1 [20.5 kB]
449s Get:60 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-gitdb all 4.0.11-1 [46.2 kB]
449s Get:61 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-git all 3.1.37-3 [138 kB]
449s Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB]
450s Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB]
450s Get:64 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cgelib all 0.7.3-3 [48.2 kB]
450s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-tabulate all 0.8.10-1 [38.2 kB]
450s Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el resfinder-db all 0.0+git20220524.fa32d9a-1 [11.3 MB]
451s Get:67 http://ftpmaster.internal/ubuntu noble/universe ppc64el resfinder all 4.4.2-1 [66.5 kB]
451s Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el resfinder-example all 4.4.2-1 [572 kB]
451s Fetched 80.4 MB in 18s (4495 kB/s)
451s Selecting previously unselected package sgml-base.
451s (Reading database ... 
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(Reading database ... 70095 files and directories currently installed.)
451s Preparing to unpack .../00-sgml-base_1.31_all.deb ...
451s Unpacking sgml-base (1.31) ...
451s Selecting previously unselected package fonts-dejavu-mono.
451s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
451s Unpacking fonts-dejavu-mono (2.37-8) ...
451s Selecting previously unselected package fonts-dejavu-core.
451s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
451s Unpacking fonts-dejavu-core (2.37-8) ...
451s Selecting previously unselected package libfontenc1:ppc64el.
451s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1_ppc64el.deb ...
451s Unpacking libfontenc1:ppc64el (1:1.1.8-1) ...
451s Selecting previously unselected package x11-common.
451s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu2_all.deb ...
451s Unpacking x11-common (1:7.7+23ubuntu2) ...
451s Selecting previously unselected package xfonts-encodings.
451s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
451s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
451s Selecting previously unselected package xfonts-utils.
451s Preparing to unpack .../06-xfonts-utils_1%3a7.7+6build2_ppc64el.deb ...
451s Unpacking xfonts-utils (1:7.7+6build2) ...
451s Selecting previously unselected package fonts-urw-base35.
451s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ...
451s Unpacking fonts-urw-base35 (20200910-8) ...
452s Selecting previously unselected package fontconfig-config.
452s Preparing to unpack .../08-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ...
452s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
452s Selecting previously unselected package fonts-dejavu-extra.
452s Preparing to unpack .../09-fonts-dejavu-extra_2.37-8_all.deb ...
452s Unpacking fonts-dejavu-extra (2.37-8) ...
452s Selecting previously unselected package liberror-perl.
452s Preparing to unpack .../10-liberror-perl_0.17029-2_all.deb ...
452s Unpacking liberror-perl (0.17029-2) ...
452s Selecting previously unselected package git-man.
452s Preparing to unpack .../11-git-man_1%3a2.43.0-1ubuntu1_all.deb ...
452s Unpacking git-man (1:2.43.0-1ubuntu1) ...
452s Selecting previously unselected package git.
452s Preparing to unpack .../12-git_1%3a2.43.0-1ubuntu1_ppc64el.deb ...
452s Unpacking git (1:2.43.0-1ubuntu1) ...
452s Selecting previously unselected package kma.
452s Preparing to unpack .../13-kma_1.4.14-2_ppc64el.deb ...
452s Unpacking kma (1.4.14-2) ...
452s Selecting previously unselected package libblas3:ppc64el.
452s Preparing to unpack .../14-libblas3_3.12.0-3_ppc64el.deb ...
452s Unpacking libblas3:ppc64el (3.12.0-3) ...
452s Selecting previously unselected package libfontconfig1:ppc64el.
452s Preparing to unpack .../15-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ...
452s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
452s Selecting previously unselected package libpixman-1-0:ppc64el.
452s Preparing to unpack .../16-libpixman-1-0_0.42.2-1_ppc64el.deb ...
452s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ...
452s Selecting previously unselected package libxcb-render0:ppc64el.
452s Preparing to unpack .../17-libxcb-render0_1.15-1_ppc64el.deb ...
452s Unpacking libxcb-render0:ppc64el (1.15-1) ...
452s Selecting previously unselected package libxcb-shm0:ppc64el.
452s Preparing to unpack .../18-libxcb-shm0_1.15-1_ppc64el.deb ...
452s Unpacking libxcb-shm0:ppc64el (1.15-1) ...
452s Selecting previously unselected package libxrender1:ppc64el.
452s Preparing to unpack .../19-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ...
452s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ...
452s Selecting previously unselected package libcairo2:ppc64el.
452s Preparing to unpack .../20-libcairo2_1.18.0-1_ppc64el.deb ...
452s Unpacking libcairo2:ppc64el (1.18.0-1) ...
452s Selecting previously unselected package libdeflate0:ppc64el.
452s Preparing to unpack .../21-libdeflate0_1.19-1_ppc64el.deb ...
452s Unpacking libdeflate0:ppc64el (1.19-1) ...
452s Selecting previously unselected package libgfortran5:ppc64el.
452s Preparing to unpack .../22-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ...
452s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
452s Selecting previously unselected package libgomp1:ppc64el.
452s Preparing to unpack .../23-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ...
452s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ...
452s Selecting previously unselected package libgraphite2-3:ppc64el.
452s Preparing to unpack .../24-libgraphite2-3_1.3.14-2_ppc64el.deb ...
452s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ...
452s Selecting previously unselected package libharfbuzz0b:ppc64el.
452s Preparing to unpack .../25-libharfbuzz0b_8.3.0-2_ppc64el.deb ...
452s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ...
452s Selecting previously unselected package libimagequant0:ppc64el.
452s Preparing to unpack .../26-libimagequant0_2.18.0-1_ppc64el.deb ...
452s Unpacking libimagequant0:ppc64el (2.18.0-1) ...
452s Selecting previously unselected package libjpeg-turbo8:ppc64el.
452s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ...
452s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
452s Selecting previously unselected package libjpeg8:ppc64el.
452s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
452s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
452s Selecting previously unselected package liblapack3:ppc64el.
452s Preparing to unpack .../29-liblapack3_3.12.0-3_ppc64el.deb ...
452s Unpacking liblapack3:ppc64el (3.12.0-3) ...
452s Selecting previously unselected package liblcms2-2:ppc64el.
452s Preparing to unpack .../30-liblcms2-2_2.14-2_ppc64el.deb ...
452s Unpacking liblcms2-2:ppc64el (2.14-2) ...
452s Selecting previously unselected package liblerc4:ppc64el.
452s Preparing to unpack .../31-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ...
452s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
453s Selecting previously unselected package libmbedcrypto7t64:ppc64el.
453s Preparing to unpack .../32-libmbedcrypto7t64_2.28.7-1.1ubuntu1_ppc64el.deb ...
453s Unpacking libmbedcrypto7t64:ppc64el (2.28.7-1.1ubuntu1) ...
453s Selecting previously unselected package libmbedx509-1t64:ppc64el.
453s Preparing to unpack .../33-libmbedx509-1t64_2.28.7-1.1ubuntu1_ppc64el.deb ...
453s Unpacking libmbedx509-1t64:ppc64el (2.28.7-1.1ubuntu1) ...
453s Selecting previously unselected package libmbedtls14t64:ppc64el.
453s Preparing to unpack .../34-libmbedtls14t64_2.28.7-1.1ubuntu1_ppc64el.deb ...
453s Unpacking libmbedtls14t64:ppc64el (2.28.7-1.1ubuntu1) ...
453s Selecting previously unselected package libraqm0:ppc64el.
453s Preparing to unpack .../35-libraqm0_0.10.1-1_ppc64el.deb ...
453s Unpacking libraqm0:ppc64el (0.10.1-1) ...
453s Selecting previously unselected package libsharpyuv0:ppc64el.
453s Preparing to unpack .../36-libsharpyuv0_1.3.2-0.4_ppc64el.deb ...
453s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ...
453s Selecting previously unselected package libjbig0:ppc64el.
453s Preparing to unpack .../37-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ...
453s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ...
453s Selecting previously unselected package libwebp7:ppc64el.
453s Preparing to unpack .../38-libwebp7_1.3.2-0.4_ppc64el.deb ...
453s Unpacking libwebp7:ppc64el (1.3.2-0.4) ...
453s Selecting previously unselected package libtiff6:ppc64el.
453s Preparing to unpack .../39-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ...
453s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
453s Selecting previously unselected package libwebpdemux2:ppc64el.
453s Preparing to unpack .../40-libwebpdemux2_1.3.2-0.4_ppc64el.deb ...
453s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ...
453s Selecting previously unselected package libwebpmux3:ppc64el.
453s Preparing to unpack .../41-libwebpmux3_1.3.2-0.4_ppc64el.deb ...
453s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ...
453s Selecting previously unselected package ncbi-data.
453s Preparing to unpack .../42-ncbi-data_6.1.20170106+dfsg1-10_all.deb ...
453s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ...
453s Selecting previously unselected package ncbi-blast+.
453s Preparing to unpack .../43-ncbi-blast+_2.12.0+ds-4build1_ppc64el.deb ...
453s Unpacking ncbi-blast+ (2.12.0+ds-4build1) ...
453s Selecting previously unselected package ncbi-blast+-legacy.
453s Preparing to unpack .../44-ncbi-blast+-legacy_2.12.0+ds-4build1_all.deb ...
453s Unpacking ncbi-blast+-legacy (2.12.0+ds-4build1) ...
453s Selecting previously unselected package python3-numpy.
453s Preparing to unpack .../45-python3-numpy_1%3a1.24.2-2_ppc64el.deb ...
453s Unpacking python3-numpy (1:1.24.2-2) ...
454s Selecting previously unselected package libopenjp2-7:ppc64el.
454s Preparing to unpack .../46-libopenjp2-7_2.5.0-2_ppc64el.deb ...
454s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ...
454s Selecting previously unselected package python3-pil:ppc64el.
454s Preparing to unpack .../47-python3-pil_10.2.0-1_ppc64el.deb ...
454s Unpacking python3-pil:ppc64el (10.2.0-1) ...
454s Selecting previously unselected package python3-cairo.
454s Preparing to unpack .../48-python3-cairo_1.25.1-2_ppc64el.deb ...
454s Unpacking python3-cairo (1.25.1-2) ...
454s Selecting previously unselected package python3-freetype.
454s Preparing to unpack .../49-python3-freetype_2.4.0-1_all.deb ...
454s Unpacking python3-freetype (2.4.0-1) ...
454s Selecting previously unselected package python3-rlpycairo.
454s Preparing to unpack .../50-python3-rlpycairo_0.3.0-3_all.deb ...
454s Unpacking python3-rlpycairo (0.3.0-3) ...
454s Selecting previously unselected package python3-reportlab.
454s Preparing to unpack .../51-python3-reportlab_4.1.0-1_all.deb ...
454s Unpacking python3-reportlab (4.1.0-1) ...
454s Selecting previously unselected package xml-core.
454s Preparing to unpack .../52-xml-core_0.19_all.deb ...
454s Unpacking xml-core (0.19) ...
454s Selecting previously unselected package w3c-sgml-lib.
454s Preparing to unpack .../53-w3c-sgml-lib_1.3-3_all.deb ...
454s Unpacking w3c-sgml-lib (1.3-3) ...
454s Selecting previously unselected package python3-biopython.
454s Preparing to unpack .../54-python3-biopython_1.81+dfsg-3_ppc64el.deb ...
454s Unpacking python3-biopython (1.81+dfsg-3) ...
454s Selecting previously unselected package python3-cgecore.
454s Preparing to unpack .../55-python3-cgecore_1.5.6+ds-1_all.deb ...
454s Unpacking python3-cgecore (1.5.6+ds-1) ...
454s Selecting previously unselected package python3-dateutil.
454s Preparing to unpack .../56-python3-dateutil_2.8.2-3_all.deb ...
454s Unpacking python3-dateutil (2.8.2-3) ...
454s Selecting previously unselected package python3-smmap.
454s Preparing to unpack .../57-python3-smmap_6.0.0-1_all.deb ...
454s Unpacking python3-smmap (6.0.0-1) ...
454s Selecting previously unselected package python3-gitdb.
454s Preparing to unpack .../58-python3-gitdb_4.0.11-1_all.deb ...
454s Unpacking python3-gitdb (4.0.11-1) ...
454s Selecting previously unselected package python3-git.
454s Preparing to unpack .../59-python3-git_3.1.37-3_all.deb ...
454s Unpacking python3-git (3.1.37-3) ...
454s Selecting previously unselected package python3-pandas-lib:ppc64el.
454s Preparing to unpack .../60-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_ppc64el.deb ...
454s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ...
455s Selecting previously unselected package python3-pandas.
455s Preparing to unpack .../61-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ...
455s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ...
455s Selecting previously unselected package python3-cgelib.
455s Preparing to unpack .../62-python3-cgelib_0.7.3-3_all.deb ...
455s Unpacking python3-cgelib (0.7.3-3) ...
455s Selecting previously unselected package python3-tabulate.
455s Preparing to unpack .../63-python3-tabulate_0.8.10-1_all.deb ...
455s Unpacking python3-tabulate (0.8.10-1) ...
455s Selecting previously unselected package resfinder-db.
455s Preparing to unpack .../64-resfinder-db_0.0+git20220524.fa32d9a-1_all.deb ...
455s Unpacking resfinder-db (0.0+git20220524.fa32d9a-1) ...
456s Selecting previously unselected package resfinder.
456s Preparing to unpack .../65-resfinder_4.4.2-1_all.deb ...
456s Unpacking resfinder (4.4.2-1) ...
456s Selecting previously unselected package resfinder-example.
456s Preparing to unpack .../66-resfinder-example_4.4.2-1_all.deb ...
456s Unpacking resfinder-example (4.4.2-1) ...
456s Selecting previously unselected package autopkgtest-satdep.
456s Preparing to unpack .../67-2-autopkgtest-satdep.deb ...
456s Unpacking autopkgtest-satdep (0) ...
456s Setting up libgraphite2-3:ppc64el (1.3.14-2) ...
456s Setting up liblcms2-2:ppc64el (2.14-2) ...
456s Setting up ncbi-data (6.1.20170106+dfsg1-10) ...
456s Setting up libpixman-1-0:ppc64el (0.42.2-1) ...
456s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ...
456s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
456s Setting up libmbedcrypto7t64:ppc64el (2.28.7-1.1ubuntu1) ...
456s Setting up resfinder-db (0.0+git20220524.fa32d9a-1) ...
456s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ...
456s Setting up libxcb-render0:ppc64el (1.15-1) ...
456s Setting up x11-common (1:7.7+23ubuntu2) ...
457s Setting up libdeflate0:ppc64el (1.19-1) ...
457s Setting up python3-tabulate (0.8.10-1) ...
457s Setting up libxcb-shm0:ppc64el (1.15-1) ...
457s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ...
457s Setting up python3-freetype (2.4.0-1) ...
457s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ...
457s Setting up liberror-perl (0.17029-2) ...
457s Setting up libfontenc1:ppc64el (1:1.1.8-1) ...
457s Setting up libblas3:ppc64el (3.12.0-3) ...
457s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
457s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
457s Setting up libimagequant0:ppc64el (2.18.0-1) ...
457s Setting up fonts-dejavu-mono (2.37-8) ...
457s Setting up fonts-dejavu-core (2.37-8) ...
457s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
457s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
457s Setting up libwebp7:ppc64el (1.3.2-0.4) ...
457s Setting up fonts-dejavu-extra (2.37-8) ...
457s Setting up kma (1.4.14-2) ...
457s Setting up libopenjp2-7:ppc64el (2.5.0-2) ...
457s Setting up git-man (1:2.43.0-1ubuntu1) ...
457s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ...
457s Setting up python3-dateutil (2.8.2-3) ...
457s Setting up sgml-base (1.31) ...
457s Setting up resfinder-example (4.4.2-1) ...
457s Setting up libwebpmux3:ppc64el (1.3.2-0.4) ...
457s Setting up python3-smmap (6.0.0-1) ...
457s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
457s Setting up liblapack3:ppc64el (3.12.0-3) ...
457s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
457s Setting up libmbedx509-1t64:ppc64el (2.28.7-1.1ubuntu1) ...
457s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
457s Setting up libwebpdemux2:ppc64el (1.3.2-0.4) ...
457s Setting up python3-gitdb (4.0.11-1) ...
457s Setting up xfonts-utils (1:7.7+6build2) ...
457s Setting up libraqm0:ppc64el (0.10.1-1) ...
457s Setting up git (1:2.43.0-1ubuntu1) ...
457s Setting up python3-numpy (1:1.24.2-2) ...
459s Setting up libmbedtls14t64:ppc64el (2.28.7-1.1ubuntu1) ...
459s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
459s Setting up xml-core (0.19) ...
460s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
460s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ...
460s Setting up fonts-urw-base35 (20200910-8) ...
460s Setting up libcairo2:ppc64el (1.18.0-1) ...
460s Setting up ncbi-blast+ (2.12.0+ds-4build1) ...
460s Setting up python3-pil:ppc64el (10.2.0-1) ...
460s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ...
465s Setting up python3-git (3.1.37-3) ...
465s Setting up ncbi-blast+-legacy (2.12.0+ds-4build1) ...
465s Setting up python3-cairo (1.25.1-2) ...
465s Setting up python3-cgelib (0.7.3-3) ...
466s Setting up python3-rlpycairo (0.3.0-3) ...
466s Setting up python3-reportlab (4.1.0-1) ...
467s Processing triggers for libc-bin (2.39-0ubuntu2) ...
467s Processing triggers for man-db (2.12.0-3) ...
468s Processing triggers for sgml-base (1.31) ...
468s Setting up w3c-sgml-lib (1.3-3) ...
496s Setting up python3-biopython (1.81+dfsg-3) ...
497s Setting up python3-cgecore (1.5.6+ds-1) ...
498s /usr/lib/python3/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w'
498s   start = re.search("^-*(\w+)", align_query).start(1)
498s /usr/lib/python3/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w'
498s   end = re.search("\w+(-*)$", align_query).start(1)
498s /usr/lib/python3/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{'
498s   """
498s /usr/lib/python3/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w'
498s   src = re.sub('[^\w/\-\.\*]', '', src)
498s /usr/lib/python3/dist-packages/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w'
498s   dst = re.sub('[^\w/\-\.\*]', '', dst)
498s /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
498s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
498s /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
498s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
498s /usr/lib/python3/dist-packages/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w'
498s   invalid_chars = re.findall('[^\w/\-\.\*]', os.path.basename(file_))
498s /usr/lib/python3/dist-packages/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w'
498s   src = re.sub('[^\w/\-\.\*]', '', src)
498s /usr/lib/python3/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w'
498s   dst = re.sub('[^\w/\-\.\*]', '', dst)
498s /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
498s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
498s /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
498s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
498s Setting up resfinder (4.4.2-1) ...
498s Setting up autopkgtest-satdep (0) ...
502s (Reading database ... 77065 files and directories currently installed.)
502s Removing autopkgtest-satdep (0) ...
503s autopkgtest [18:45:56]: test version-test: [-----------------------
504s PASS
505s autopkgtest [18:45:58]: test version-test: -----------------------]
505s version-test         PASS (superficial)
505s autopkgtest [18:45:58]: test version-test:  - - - - - - - - - - results - - - - - - - - - -
505s autopkgtest [18:45:58]: @@@@@@@@@@@@@@@@@@@@ summary
505s run-unit-test        PASS
505s version-test         PASS (superficial)
524s Creating nova instance adt-noble-ppc64el-resfinder-20240318-183732-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240316.img (UUID 1492b190-05c5-462d-b1de-84bc330afe32)...
524s Creating nova instance adt-noble-ppc64el-resfinder-20240318-183732-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240316.img (UUID 1492b190-05c5-462d-b1de-84bc330afe32)...