0s autopkgtest [06:26:46]: starting date and time: 2024-03-27 06:26:46+0000
  0s autopkgtest [06:26:46]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [06:26:46]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7dajmzps/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed --apt-upgrade ray --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 python3-defaults/3.12.2-0ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-9.secgroup --name adt-noble-ppc64el-ray-20240327-062646-juju-7f2275-prod-proposed-migration-environment-2-b6f73264-b7af-404d-b4c5-b44f49e1cd95 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
133s autopkgtest [06:28:59]: testbed dpkg architecture: ppc64el
133s autopkgtest [06:28:59]: testbed apt version: 2.7.12
133s autopkgtest [06:28:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup
134s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
135s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3964 kB]
137s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [55.4 kB]
137s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [8504 B]
137s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB]
137s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [702 kB]
137s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
137s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
137s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
137s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4217 kB]
139s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
139s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [62.2 kB]
139s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
142s Fetched 9637 kB in 6s (1711 kB/s)
142s Reading package lists...
144s Reading package lists...
144s Building dependency tree...
144s Reading state information...
144s Calculating upgrade...
145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
145s Reading package lists...
145s Building dependency tree...
145s Reading state information...
145s 0 upgraded, 0 newly installed, 0 to remove and 248 not upgraded.
145s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
146s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
146s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
146s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
147s Reading package lists...
147s Reading package lists...
147s Building dependency tree...
147s Reading state information...
147s Calculating upgrade...
147s The following packages were automatically installed and are no longer required:
147s   libaio1 libnetplan0 python3-distutils python3-lib2to3
147s Use 'sudo apt autoremove' to remove them.
147s The following packages will be REMOVED:
147s   libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1
147s   libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11
147s   libhogweed6 libmagic1 libnettle8 libnpth0 libnvme1 libparted2 libperl5.38
147s   libpng16-16 libpsl5 libreadline8 libreiserfscore0 libssl3 libtirpc3 liburcu8
147s   libuv1
147s The following NEW packages will be installed:
147s   bpfcc-tools bpftrace fontconfig-config fonts-dejavu-core fonts-dejavu-mono
147s   ieee-data libaio1t64 libapt-pkg6.0t64 libarchive13t64 libatm1t64 libbpfcc
147s   libc-dev-bin libc-devtools libc6-dev libclang-cpp18 libclang1-18
147s   libcrypt-dev libcurl3t64-gnutls libcurl4t64 libdb5.3t64 libdeflate0
147s   libdw1t64 libelf1t64 libext2fs2t64 libfontconfig1 libgd3 libgdbm-compat4t64
147s   libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64
147s   libjbig0 libjpeg-turbo8 libjpeg8 liblerc4 libllvm18 libmagic1t64 libnetplan1
147s   libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64 libperl5.38t64
147s   libpng16-16t64 libpsl5t64 libreadline8t64 libreiserfscore0t64 libsharpyuv0
147s   libssl3t64 libtiff6 libtirpc3t64 libunwind8 liburcu8t64 libuv1t64 libwebp7
147s   libxpm4 linux-headers-6.8.0-20 linux-headers-6.8.0-20-generic
147s   linux-image-6.8.0-20-generic linux-libc-dev linux-modules-6.8.0-20-generic
147s   linux-modules-extra-6.8.0-20-generic linux-tools-6.8.0-20
147s   linux-tools-6.8.0-20-generic linux-tools-common manpages manpages-dev
147s   python3-bpfcc python3-netaddr rpcsvc-proto ubuntu-kernel-accessories
147s   xdg-user-dirs
147s The following packages will be upgraded:
147s   apparmor apt apt-utils base-files bash bc bind9-dnsutils bind9-host
147s   bind9-libs binutils binutils-common binutils-powerpc64le-linux-gnu bolt
147s   bsdextrautils bsdutils btrfs-progs coreutils cryptsetup-bin curl dbus
147s   dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common
147s   dbus-user-session dhcpcd-base dirmngr dmsetup dpkg dpkg-dev e2fsprogs
147s   e2fsprogs-l10n eject fdisk file ftp fwupd gawk gcc-13-base gcc-14-base
147s   gir1.2-girepository-2.0 gir1.2-glib-2.0 gnupg gnupg-l10n gnupg-utils gpg
147s   gpg-agent gpg-wks-client gpgconf gpgsm gpgv groff-base grub-common
147s   grub-ieee1275 grub-ieee1275-bin grub2-common ibverbs-providers
147s   inetutils-telnet info initramfs-tools initramfs-tools-bin
147s   initramfs-tools-core install-info iproute2 jq keyboxd kmod kpartx
147s   krb5-locales libapparmor1 libaudit-common libaudit1 libbinutils libblkid1
147s   libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3
147s   libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3
147s   libblockdev3 libbpf1 libbrotli1 libcap-ng0 libcom-err2 libcryptsetup12
147s   libctf-nobfd0 libctf0 libdbus-1-3 libdebconfclient0 libdevmapper1.02.1
147s   libdpkg-perl libevent-core-2.1-7 libexpat1 libfdisk1 libfido2-1 libfreetype6
147s   libftdi1-2 libfwupd2 libgcc-s1 libgirepository-1.0-1 libglib2.0-data
147s   libgssapi-krb5-2 libgudev-1.0-0 libgusb2 libibverbs1 libjcat1 libjq1
147s   libjson-glib-1.0-0 libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3
147s   libkrb5support0 libldap-common libldap2 liblocale-gettext-perl liblzma5
147s   libmagic-mgc libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14
147s   libnsl2 libnss-systemd libpam-modules libpam-modules-bin libpam-runtime
147s   libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0
147s   libpolkit-gobject-1-0 libproc2-0 libprotobuf-c1 libpython3-stdlib
147s   libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal
147s   libpython3.12-stdlib libqmi-glib5 libqmi-proxy libqrtr-glib0 librtmp1
147s   libsasl2-2 libsasl2-modules libsasl2-modules-db libseccomp2 libselinux1
147s   libsemanage-common libsemanage2 libsframe1 libslang2 libsmartcols1
147s   libsqlite3-0 libss2 libssh-4 libstdc++6 libsystemd-shared libsystemd0
147s   libtext-charwidth-perl libtext-iconv-perl libtirpc-common libudev1
147s   libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1 libxml2 libxmlb2 libxmuu1
147s   linux-generic linux-headers-generic linux-headers-virtual
147s   linux-image-generic linux-image-virtual linux-virtual logsave lshw lsof
147s   man-db motd-news-config mount mtr-tiny multipath-tools netplan-generator
147s   netplan.io openssh-client openssh-server openssh-sftp-server openssl parted
147s   perl perl-base perl-modules-5.38 pinentry-curses plymouth
147s   plymouth-theme-ubuntu-text procps python-apt-common python3 python3-apt
147s   python3-cryptography python3-dbus python3-distutils python3-gdbm python3-gi
147s   python3-lib2to3 python3-minimal python3-netplan python3-pkg-resources
147s   python3-pyrsistent python3-setuptools python3-typing-extensions python3-yaml
147s   python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common
147s   rsync rsyslog shared-mime-info sudo systemd systemd-dev systemd-resolved
147s   systemd-sysv systemd-timesyncd tcpdump telnet tnftp ubuntu-pro-client
147s   ubuntu-pro-client-l10n udev udisks2 usb.ids util-linux uuid-runtime
147s   vim-common vim-tiny wget xxd xz-utils zlib1g
148s 248 upgraded, 73 newly installed, 28 to remove and 0 not upgraded.
148s Need to get 390 MB of archives.
148s After this operation, 640 MB of additional disk space will be used.
148s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el motd-news-config all 13ubuntu8 [5098 B]
148s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el base-files ppc64el 13ubuntu8 [74.5 kB]
148s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bash ppc64el 5.2.21-2ubuntu3 [977 kB]
149s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bsdutils ppc64el 1:2.39.3-9ubuntu2 [98.3 kB]
149s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el coreutils ppc64el 9.4-3ubuntu3 [1523 kB]
150s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudisks2-0 ppc64el 2.10.1-6 [182 kB]
151s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el udisks2 ppc64el 2.10.1-6 [344 kB]
151s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el shared-mime-info ppc64el 2.4-1build1 [481 kB]
151s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gir1.2-girepository-2.0 ppc64el 1.79.1-1ubuntu6 [24.8 kB]
151s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gir1.2-glib-2.0 ppc64el 2.79.3-3ubuntu5 [182 kB]
151s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgirepository-1.0-1 ppc64el 1.79.1-1ubuntu6 [93.8 kB]
151s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-gi ppc64el 3.47.0-3build1 [261 kB]
151s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-dbus ppc64el 1.3.2-5build2 [107 kB]
151s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnetplan1 ppc64el 1.0-1 [136 kB]
152s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-netplan ppc64el 1.0-1 [21.8 kB]
152s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el netplan-generator ppc64el 1.0-1 [59.2 kB]
152s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools-bin ppc64el 0.142ubuntu23 [21.0 kB]
152s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools-core all 0.142ubuntu23 [50.1 kB]
152s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools all 0.142ubuntu23 [9058 B]
152s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el netplan.io ppc64el 1.0-1 [66.2 kB]
152s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxmlb2 ppc64el 0.3.15-1build1 [82.6 kB]
152s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgpgme11t64 ppc64el 1.18.0-4.1ubuntu3 [173 kB]
152s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libvolume-key1 ppc64el 0.3.12-7build1 [47.9 kB]
152s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqrtr-glib0 ppc64el 1.2.2-1ubuntu3 [18.3 kB]
152s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqmi-glib5 ppc64el 1.35.2-0ubuntu1 [966 kB]
153s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqmi-proxy ppc64el 1.35.2-0ubuntu1 [6208 B]
153s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpolkit-agent-1-0 ppc64el 124-1ubuntu1 [18.8 kB]
153s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpolkit-gobject-1-0 ppc64el 124-1ubuntu1 [52.7 kB]
153s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmm-glib0 ppc64el 1.23.4-0ubuntu1 [282 kB]
153s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmbim-glib4 ppc64el 1.31.2-0ubuntu2 [253 kB]
153s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmbim-proxy ppc64el 1.31.2-0ubuntu2 [6274 B]
153s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjson-glib-1.0-common all 1.8.0-2build1 [4210 B]
153s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjson-glib-1.0-0 ppc64el 1.8.0-2build1 [73.6 kB]
153s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgusb2 ppc64el 0.4.8-1build1 [43.0 kB]
153s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgudev-1.0-0 ppc64el 1:238-3ubuntu2 [15.8 kB]
153s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el tnftp ppc64el 20230507-2build1 [116 kB]
153s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el tcpdump ppc64el 4.99.4-3ubuntu2 [543 kB]
154s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd0 ppc64el 255.4-1ubuntu5 [526 kB]
154s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-dev all 255.4-1ubuntu5 [103 kB]
154s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnss-systemd ppc64el 255.4-1ubuntu5 [208 kB]
154s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudev1 ppc64el 255.4-1ubuntu5 [200 kB]
154s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB]
156s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd ppc64el 255.4-1ubuntu5 [3771 kB]
159s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el udev ppc64el 255.4-1ubuntu5 [2038 kB]
160s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-sysv ppc64el 255.4-1ubuntu5 [11.9 kB]
160s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-systemd ppc64el 255.4-1ubuntu5 [304 kB]
160s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-timesyncd ppc64el 255.4-1ubuntu5 [37.9 kB]
160s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd-shared ppc64el 255.4-1ubuntu5 [2351 kB]
161s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-resolved ppc64el 255.4-1ubuntu5 [346 kB]
161s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el sudo ppc64el 1.9.15p5-3ubuntu3 [1005 kB]
162s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el rsync ppc64el 3.2.7-1build1 [487 kB]
162s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-cryptography ppc64el 41.0.7-4build2 [860 kB]
162s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB]
163s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-sftp-server ppc64el 1:9.6p1-3ubuntu11 [43.7 kB]
163s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-client ppc64el 1:9.6p1-3ubuntu11 [1112 kB]
163s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-server ppc64el 1:9.6p1-3ubuntu11 [627 kB]
164s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssh-4 ppc64el 0.10.6-2build1 [234 kB]
164s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-modules ppc64el 2.1.28+dfsg1-5ubuntu1 [83.1 kB]
164s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.12 ppc64el 3.12.2-4build3 [645 kB]
164s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.12-minimal ppc64el 3.12.2-4build3 [2447 kB]
165s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.12-minimal ppc64el 3.12.2-4build3 [836 kB]
165s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-ieee1275 ppc64el 2.12-1ubuntu5 [63.1 kB]
165s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub2-common ppc64el 2.12-1ubuntu5 [752 kB]
165s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-common ppc64el 2.12-1ubuntu5 [2356 kB]
165s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-ieee1275-bin ppc64el 2.12-1ubuntu5 [687 kB]
166s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libparted2t64 ppc64el 3.6-3.1build2 [184 kB]
166s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el parted ppc64el 3.6-3.1build2 [58.9 kB]
166s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.11 ppc64el 3.11.8-1build4 [589 kB]
166s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.11-minimal ppc64el 3.11.8-1build4 [2292 kB]
166s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.11-minimal ppc64el 3.11.8-1build4 [846 kB]
166s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.11-stdlib ppc64el 3.11.8-1build4 [1977 kB]
166s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg-utils ppc64el 2.4.4-2ubuntu15 [123 kB]
166s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg-agent ppc64el 2.4.4-2ubuntu15 [275 kB]
166s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg-wks-client ppc64el 2.4.4-2ubuntu15 [85.0 kB]
166s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg ppc64el 2.4.4-2ubuntu15 [706 kB]
167s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libnpth0t64 ppc64el 1.6-3.1 [8864 B]
167s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgv ppc64el 2.4.4-2ubuntu15 [198 kB]
167s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dirmngr ppc64el 2.4.4-2ubuntu15 [391 kB]
167s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg all 2.4.4-2ubuntu15 [359 kB]
167s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el keyboxd ppc64el 2.4.4-2ubuntu15 [94.3 kB]
167s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgconf ppc64el 2.4.4-2ubuntu15 [115 kB]
167s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgsm ppc64el 2.4.4-2ubuntu15 [292 kB]
167s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libreadline8t64 ppc64el 8.2-4 [182 kB]
167s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gawk ppc64el 1:5.2.1-2build2 [528 kB]
167s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fdisk ppc64el 2.39.3-9ubuntu2 [132 kB]
167s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bc ppc64el 1.07.1-3ubuntu2 [93.2 kB]
167s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.12-stdlib ppc64el 3.12.2-4build3 [2082 kB]
167s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-base ppc64el 5.38.2-3.2 [1916 kB]
167s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-modules-5.38 all 5.38.2-3.2 [3110 kB]
168s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-gdbm ppc64el 3.12.2-3ubuntu1.1 [19.8 kB]
168s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el man-db ppc64el 2.12.0-3build4 [1274 kB]
168s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm6t64 ppc64el 1.23-5.1 [41.9 kB]
168s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm-compat4t64 ppc64el 1.23-5.1 [6972 B]
168s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libperl5.38t64 ppc64el 5.38.2-3.2 [4957 kB]
169s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl ppc64el 5.38.2-3.2 [231 kB]
169s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-6 [875 kB]
169s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-5ubuntu1 [23.4 kB]
169s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-5ubuntu1 [68.0 kB]
169s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnvme1t64 ppc64el 1.8-3 [98.2 kB]
169s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el wget ppc64el 1.21.4-1ubuntu2 [382 kB]
169s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu8 [428 kB]
169s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el curl ppc64el 8.5.0-2ubuntu8 [234 kB]
169s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1 [59.0 kB]
169s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libarchive13t64 ppc64el 3.7.2-1.1ubuntu2 [518 kB]
170s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fwupd ppc64el 1.9.15-2 [4634 kB]
170s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl3t64-gnutls ppc64el 8.5.0-2ubuntu8 [419 kB]
171s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfwupd2 ppc64el 1.9.15-2 [136 kB]
171s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev3 ppc64el 3.1.0-1build1 [55.2 kB]
171s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-utils3 ppc64el 3.1.0-1build1 [20.3 kB]
171s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-swap3 ppc64el 3.1.0-1build1 [8616 B]
171s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-part3 ppc64el 3.1.0-1build1 [17.5 kB]
171s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-nvme3 ppc64el 3.1.0-1build1 [20.1 kB]
171s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-mdraid3 ppc64el 3.1.0-1build1 [14.3 kB]
171s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-loop3 ppc64el 3.1.0-1build1 [7742 B]
171s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B]
171s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el logsave ppc64el 1.47.0-2.4~exp1ubuntu2 [22.9 kB]
171s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libext2fs2t64 ppc64el 1.47.0-2.4~exp1ubuntu2 [270 kB]
171s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el e2fsprogs ppc64el 1.47.0-2.4~exp1ubuntu2 [663 kB]
171s Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libreiserfscore0t64 ppc64el 1:3.6.27-7.1 [92.7 kB]
171s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el btrfs-progs ppc64el 6.6.3-1.1build1 [1352 kB]
171s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-fs3 ppc64el 3.1.0-1build1 [41.2 kB]
171s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-crypto3 ppc64el 3.1.0-1build1 [22.5 kB]
171s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bolt ppc64el 0.9.6-2build1 [171 kB]
171s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-0t64 ppc64el 2.79.3-3ubuntu5 [1773 kB]
171s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjcat1 ppc64el 0.2.0-2build2 [40.0 kB]
171s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libldap2 ppc64el 2.6.7+dfsg-1~exp1ubuntu6 [233 kB]
171s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ubuntu-pro-client-l10n ppc64el 31.2.2 [19.4 kB]
171s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ubuntu-pro-client ppc64el 31.2.2 [215 kB]
171s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-apt ppc64el 2.7.7 [181 kB]
171s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt-utils ppc64el 2.7.14 [226 kB]
171s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapt-pkg6.0t64 ppc64el 2.7.14 [1063 kB]
171s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnettle8t64 ppc64el 3.9.1-2.2 [226 kB]
171s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libhogweed6t64 ppc64el 3.9.1-2.2 [208 kB]
171s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgnutls30t64 ppc64el 3.8.3-1.1ubuntu2 [1154 kB]
172s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt ppc64el 2.7.14 [1401 kB]
172s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build6 [64.4 kB]
172s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblzma5 ppc64el 5.6.0-0.2 [156 kB]
172s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblkid1 ppc64el 2.39.3-9ubuntu2 [155 kB]
172s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el kmod ppc64el 31+20240202-2ubuntu4 [122 kB]
172s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkmod2 ppc64el 31+20240202-2ubuntu4 [64.4 kB]
172s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libselinux1 ppc64el 3.5-2ubuntu1 [101 kB]
172s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libaudit-common all 1:3.1.2-2.1 [5674 B]
172s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcap-ng0 ppc64el 0.8.4-2build1 [16.2 kB]
172s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libaudit1 ppc64el 1:3.1.2-2.1 [52.8 kB]
172s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam0g ppc64el 1.5.3-5ubuntu3 [75.7 kB]
172s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-modules-bin ppc64el 1.5.3-5ubuntu3 [57.9 kB]
172s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-modules ppc64el 1.5.3-5ubuntu3 [320 kB]
172s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB]
172s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB]
172s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-user-session ppc64el 1.14.10-4ubuntu2 [9960 B]
172s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapparmor1 ppc64el 4.0.0-beta3-0ubuntu2 [55.0 kB]
172s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libexpat1 ppc64el 2.6.1-2 [101 kB]
172s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB]
172s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-bin ppc64el 1.14.10-4ubuntu2 [48.1 kB]
172s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus ppc64el 1.14.10-4ubuntu2 [26.9 kB]
172s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-daemon ppc64el 1.14.10-4ubuntu2 [136 kB]
172s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdbus-1-3 ppc64el 1.14.10-4ubuntu2 [244 kB]
172s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.185-3ubuntu2 [182 kB]
172s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libuuid1 ppc64el 2.39.3-9ubuntu2 [39.3 kB]
172s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcryptsetup12 ppc64el 2:2.7.0-1ubuntu2 [376 kB]
172s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfdisk1 ppc64el 2.39.3-9ubuntu2 [171 kB]
172s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libseccomp2 ppc64el 2.5.5-1ubuntu2 [62.5 kB]
172s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el mount ppc64el 2.39.3-9ubuntu2 [125 kB]
172s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmount1 ppc64el 2.39.3-9ubuntu2 [169 kB]
172s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3.1ubuntu1 [72.8 kB]
172s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-minimal ppc64el 3.12.2-0ubuntu1 [27.1 kB]
172s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3 ppc64el 3.12.2-0ubuntu1 [24.1 kB]
172s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libplymouth5 ppc64el 24.004.60-1ubuntu6 [166 kB]
172s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpng16-16t64 ppc64el 1.6.43-3 [242 kB]
172s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbrotli1 ppc64el 1.1.0-2build1 [410 kB]
172s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfreetype6 ppc64el 2.13.2+dfsg-1build2 [545 kB]
172s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsqlite3-0 ppc64el 3.45.1-1ubuntu1 [804 kB]
172s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el pinentry-curses ppc64el 1.2.1-3ubuntu4 [38.7 kB]
172s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-14-base ppc64el 14-20240315-1ubuntu1 [47.0 kB]
172s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-s1 ppc64el 14-20240315-1ubuntu1 [39.2 kB]
172s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++6 ppc64el 14-20240315-1ubuntu1 [897 kB]
172s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python-apt-common all 2.7.7 [19.8 kB]
172s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsmartcols1 ppc64el 2.39.3-9ubuntu2 [79.0 kB]
172s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el readline-common all 8.2-4 [56.4 kB]
172s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bsdextrautils ppc64el 2.39.3-9ubuntu2 [78.6 kB]
172s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el groff-base ppc64el 1.23.0-3build1 [1112 kB]
172s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.2-0ubuntu1 [9798 B]
172s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfido2-1 ppc64el 1.14.0-1build1 [111 kB]
172s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-6ubuntu1 [185 kB]
172s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkrb5-3 ppc64el 1.20.1-6ubuntu1 [432 kB]
173s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkrb5support0 ppc64el 1.20.1-6ubuntu1 [38.5 kB]
173s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libk5crypto3 ppc64el 1.20.1-6ubuntu1 [108 kB]
173s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcom-err2 ppc64el 1.47.0-2.4~exp1ubuntu2 [22.9 kB]
173s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libproc2-0 ppc64el 2:4.0.4-4ubuntu2 [68.8 kB]
173s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el procps ppc64el 2:4.0.4-4ubuntu2 [736 kB]
173s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnghttp2-14 ppc64el 1.59.0-1build1 [89.0 kB]
173s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dpkg ppc64el 1.22.6ubuntu5 [1343 kB]
173s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el util-linux ppc64el 2.39.3-9ubuntu2 [1195 kB]
173s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3ubuntu2 [840 kB]
173s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbpf1 ppc64el 1:1.3.0-2build1 [216 kB]
173s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el iproute2 ppc64el 6.1.0-1ubuntu5 [1384 kB]
173s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libelf1t64 ppc64el 0.190-1.1build2 [69.3 kB]
173s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dhcpcd-base ppc64el 1:10.0.6-1ubuntu2 [276 kB]
173s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el file ppc64el 1:5.45-3 [22.7 kB]
173s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmagic-mgc ppc64el 1:5.45-3 [307 kB]
173s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmagic1t64 ppc64el 1:5.45-3 [106 kB]
173s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc-common all 1.3.4+ds-1.1 [8018 B]
173s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el lsof ppc64el 4.95.0-1build2 [256 kB]
174s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnsl2 ppc64el 1.3.0-3build2 [48.9 kB]
174s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc3t64 ppc64el 1.3.4+ds-1.1 [102 kB]
174s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el multipath-tools ppc64el 0.9.4-5ubuntu6 [341 kB]
174s Get:207 http://ftpmaster.internal/ubuntu noble/main ppc64el liburcu8t64 ppc64el 0.14.0-3.1 [73.6 kB]
174s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-host ppc64el 1:9.18.24-0ubuntu3 [54.5 kB]
174s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-dnsutils ppc64el 1:9.18.24-0ubuntu3 [167 kB]
174s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-libs ppc64el 1:9.18.24-0ubuntu3 [1436 kB]
175s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libuv1t64 ppc64el 1.48.0-1.1 [117 kB]
175s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblocale-gettext-perl ppc64el 1.07-6ubuntu4 [16.1 kB]
175s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el uuid-runtime ppc64el 2.39.3-9ubuntu2 [33.8 kB]
175s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdebconfclient0 ppc64el 0.271ubuntu2 [11.2 kB]
175s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsemanage-common all 3.5-1build4 [10.1 kB]
175s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsemanage2 ppc64el 3.5-1build4 [115 kB]
175s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el install-info ppc64el 7.1-3build1 [64.5 kB]
175s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13-base ppc64el 13.2.0-21ubuntu1 [48.3 kB]
175s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libss2 ppc64el 1.47.0-2.4~exp1ubuntu2 [18.0 kB]
175s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dmsetup ppc64el 2:1.02.185-3ubuntu2 [91.8 kB]
175s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el eject ppc64el 2.39.3-9ubuntu2 [28.2 kB]
175s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el krb5-locales all 1.20.1-6ubuntu1 [13.8 kB]
175s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
175s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libslang2 ppc64el 2.3.3-3build1 [501 kB]
175s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtext-charwidth-perl ppc64el 0.04-11build2 [9506 B]
175s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtext-iconv-perl ppc64el 1.7-8build2 [13.7 kB]
175s Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-yaml ppc64el 6.0.1-2build1 [123 kB]
175s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-setuptools all 68.1.2-2ubuntu1 [396 kB]
175s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB]
175s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el rsyslog ppc64el 8.2312.0-3ubuntu7 [629 kB]
175s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el vim-tiny ppc64el 2:9.1.0016-1ubuntu6 [1042 kB]
176s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el vim-common all 2:9.1.0016-1ubuntu6 [385 kB]
176s Get:233 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-user-dirs ppc64el 0.18-1 [20.0 kB]
176s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el xxd ppc64el 2:9.1.0016-1ubuntu6 [63.7 kB]
176s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apparmor ppc64el 4.0.0-beta3-0ubuntu2 [747 kB]
176s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ftp all 20230507-2build1 [4724 B]
176s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el inetutils-telnet ppc64el 2:2.5-3ubuntu3 [115 kB]
176s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el info ppc64el 7.1-3build1 [188 kB]
176s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libusb-1.0-0 ppc64el 2:1.0.27-1 [64.0 kB]
176s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxmuu1 ppc64el 2:1.1.3-3build1 [9488 B]
176s Get:241 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el lshw ppc64el 02.19.git.2021.06.19.996aaad9c7-2build2 [334 kB]
176s Get:242 http://ftpmaster.internal/ubuntu noble/main ppc64el manpages all 6.05.01-1 [1340 kB]
176s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el mtr-tiny ppc64el 0.95-1.1build1 [62.8 kB]
176s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el plymouth-theme-ubuntu-text ppc64el 24.004.60-1ubuntu6 [11.1 kB]
176s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el plymouth ppc64el 24.004.60-1ubuntu6 [155 kB]
176s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el telnet all 0.17+2.5-3ubuntu3 [3682 B]
176s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el usb.ids all 2024.03.18-1 [223 kB]
176s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el xz-utils ppc64el 5.6.0-0.2 [281 kB]
176s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libctf0 ppc64el 2.42-4ubuntu1 [112 kB]
176s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libctf-nobfd0 ppc64el 2.42-4ubuntu1 [112 kB]
176s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.42-4ubuntu1 [2473 kB]
177s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbinutils ppc64el 2.42-4ubuntu1 [699 kB]
177s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils ppc64el 2.42-4ubuntu1 [3078 B]
177s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils-common ppc64el 2.42-4ubuntu1 [217 kB]
177s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsframe1 ppc64el 2.42-4ubuntu1 [16.0 kB]
177s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libllvm18 ppc64el 1:18.1.2-1ubuntu2 [28.9 MB]
183s Get:257 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libclang-cpp18 ppc64el 1:18.1.2-1ubuntu2 [14.6 MB]
188s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libbpfcc ppc64el 0.29.1+ds-1ubuntu4 [707 kB]
188s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-bpfcc all 0.29.1+ds-1ubuntu4 [40.2 kB]
188s Get:260 http://ftpmaster.internal/ubuntu noble/main ppc64el ieee-data all 20220827.1 [2113 kB]
189s Get:261 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-netaddr all 0.8.0-2ubuntu1 [319 kB]
189s Get:262 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el bpfcc-tools all 0.29.1+ds-1ubuntu4 [687 kB]
189s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libclang1-18 ppc64el 1:18.1.2-1ubuntu2 [8725 kB]
192s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdw1t64 ppc64el 0.190-1.1build2 [301 kB]
192s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el bpftrace ppc64el 0.20.2-1ubuntu1 [1058 kB]
192s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cryptsetup-bin ppc64el 2:2.7.0-1ubuntu2 [227 kB]
193s Get:267 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dpkg-dev all 1.22.6ubuntu5 [1074 kB]
193s Get:268 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdpkg-perl all 1.22.6ubuntu5 [269 kB]
193s Get:269 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
193s Get:270 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
193s Get:271 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu1 [37.4 kB]
193s Get:272 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libprotobuf-c1 ppc64el 1.4.1-1ubuntu3 [25.9 kB]
193s Get:273 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB]
193s Get:274 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libibverbs1 ppc64el 50.0-2build1 [74.4 kB]
194s Get:275 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ibverbs-providers ppc64el 50.0-2build1 [420 kB]
194s Get:276 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el jq ppc64el 1.7.1-3 [66.1 kB]
194s Get:277 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjq1 ppc64el 1.7.1-3 [173 kB]
194s Get:278 http://ftpmaster.internal/ubuntu noble/main ppc64el libaio1t64 ppc64el 0.3.113-6 [8188 B]
194s Get:279 http://ftpmaster.internal/ubuntu noble/main ppc64el libatm1t64 ppc64el 1:2.5.1-5.1 [26.9 kB]
194s Get:280 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu6 [21.3 kB]
194s Get:281 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu1 [190 kB]
194s Get:282 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB]
194s Get:283 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
194s Get:284 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
194s Get:285 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB]
194s Get:286 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB]
194s Get:287 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4build2 [28.8 kB]
194s Get:288 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libwebp7 ppc64el 1.3.2-0.4build2 [312 kB]
194s Get:289 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu1 [274 kB]
194s Get:290 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxpm4 ppc64el 1:3.5.17-1build1 [50.2 kB]
194s Get:291 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgd3 ppc64el 2.3.3-9ubuntu3 [162 kB]
194s Get:292 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-devtools ppc64el 2.39-0ubuntu6 [29.6 kB]
194s Get:293 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-libc-dev ppc64el 6.8.0-20.20 [1586 kB]
195s Get:294 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB]
195s Get:295 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB]
195s Get:296 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu6 [2102 kB]
196s Get:297 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libevent-core-2.1-7 ppc64el 2.1.12-stable-9build1 [110 kB]
196s Get:298 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libftdi1-2 ppc64el 1.5-6build4 [32.5 kB]
196s Get:299 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB]
196s Get:300 http://ftpmaster.internal/ubuntu noble/main ppc64el libunwind8 ppc64el 1.6.2-3 [59.9 kB]
196s Get:301 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-modules-6.8.0-20-generic ppc64el 6.8.0-20.20 [31.3 MB]
207s Get:302 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-6.8.0-20-generic ppc64el 6.8.0-20.20 [63.9 MB]
224s Get:303 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-modules-extra-6.8.0-20-generic ppc64el 6.8.0-20.20 [103 MB]
247s Get:304 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-generic ppc64el 6.8.0-20.20+1 [1734 B]
248s Get:305 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-generic ppc64el 6.8.0-20.20+1 [9698 B]
248s Get:306 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-virtual ppc64el 6.8.0-20.20+1 [1686 B]
248s Get:307 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-virtual ppc64el 6.8.0-20.20+1 [9702 B]
248s Get:308 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-virtual ppc64el 6.8.0-20.20+1 [1648 B]
248s Get:309 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB]
251s Get:310 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-6.8.0-20-generic ppc64el 6.8.0-20.20 [3728 kB]
252s Get:311 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-generic ppc64el 6.8.0-20.20+1 [9612 B]
252s Get:312 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-common all 6.8.0-20.20 [437 kB]
252s Get:313 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-6.8.0-20 ppc64el 6.8.0-20.20 [2924 kB]
252s Get:314 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-6.8.0-20-generic ppc64el 6.8.0-20.20 [1730 B]
252s Get:315 http://ftpmaster.internal/ubuntu noble/main ppc64el manpages-dev all 6.05.01-1 [2018 kB]
252s Get:316 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-distutils all 3.12.2-3ubuntu1.1 [133 kB]
252s Get:317 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB]
252s Get:318 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-pyrsistent ppc64el 0.20.0-1build1 [60.4 kB]
252s Get:319 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-typing-extensions all 4.10.0-1 [60.7 kB]
252s Get:320 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-kernel-accessories ppc64el 1.536build1 [10.5 kB]
252s Get:321 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el kpartx ppc64el 0.9.4-5ubuntu6 [34.4 kB]
253s Preconfiguring packages ...
253s Fetched 390 MB in 1min 45s (3729 kB/s)
253s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70153 files and directories currently installed.)
253s Preparing to unpack .../motd-news-config_13ubuntu8_all.deb ...
253s Unpacking motd-news-config (13ubuntu8) over (13ubuntu7) ...
253s Preparing to unpack .../base-files_13ubuntu8_ppc64el.deb ...
253s Unpacking base-files (13ubuntu8) over (13ubuntu7) ...
253s Setting up base-files (13ubuntu8) ...
254s motd-news.service is a disabled or a static unit not running, not starting it.
254s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70153 files and directories currently installed.)
254s Preparing to unpack .../bash_5.2.21-2ubuntu3_ppc64el.deb ...
254s Unpacking bash (5.2.21-2ubuntu3) over (5.2.21-2ubuntu2) ...
254s Setting up bash (5.2.21-2ubuntu3) ...
254s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode
254s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70153 files and directories currently installed.)
254s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_ppc64el.deb ...
254s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ...
254s Setting up bsdutils (1:2.39.3-9ubuntu2) ...
254s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70153 files and directories currently installed.)
254s Preparing to unpack .../coreutils_9.4-3ubuntu3_ppc64el.deb ...
254s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ...
254s Setting up coreutils (9.4-3ubuntu3) ...
254s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70153 files and directories currently installed.)
254s Preparing to unpack .../00-libudisks2-0_2.10.1-6_ppc64el.deb ...
254s Unpacking libudisks2-0:ppc64el (2.10.1-6) over (2.10.1-1ubuntu2) ...
254s Preparing to unpack .../01-udisks2_2.10.1-6_ppc64el.deb ...
254s Unpacking udisks2 (2.10.1-6) over (2.10.1-1ubuntu2) ...
254s Preparing to unpack .../02-shared-mime-info_2.4-1build1_ppc64el.deb ...
254s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ...
254s Preparing to unpack .../03-gir1.2-girepository-2.0_1.79.1-1ubuntu6_ppc64el.deb ...
254s Unpacking gir1.2-girepository-2.0:ppc64el (1.79.1-1ubuntu6) over (1.79.1-1) ...
254s Preparing to unpack .../04-gir1.2-glib-2.0_2.79.3-3ubuntu5_ppc64el.deb ...
254s Unpacking gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
254s Preparing to unpack .../05-libgirepository-1.0-1_1.79.1-1ubuntu6_ppc64el.deb ...
254s Unpacking libgirepository-1.0-1:ppc64el (1.79.1-1ubuntu6) over (1.79.1-1) ...
255s Preparing to unpack .../06-python3-gi_3.47.0-3build1_ppc64el.deb ...
255s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ...
255s Preparing to unpack .../07-python3-dbus_1.3.2-5build2_ppc64el.deb ...
255s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ...
255s Selecting previously unselected package libnetplan1:ppc64el.
255s Preparing to unpack .../08-libnetplan1_1.0-1_ppc64el.deb ...
255s Unpacking libnetplan1:ppc64el (1.0-1) ...
255s Preparing to unpack .../09-python3-netplan_1.0-1_ppc64el.deb ...
255s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ...
255s Preparing to unpack .../10-netplan-generator_1.0-1_ppc64el.deb ...
255s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
255s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ...
255s Preparing to unpack .../11-initramfs-tools-bin_0.142ubuntu23_ppc64el.deb ...
255s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ...
255s Preparing to unpack .../12-initramfs-tools-core_0.142ubuntu23_all.deb ...
255s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ...
255s Preparing to unpack .../13-initramfs-tools_0.142ubuntu23_all.deb ...
255s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ...
255s Preparing to unpack .../14-netplan.io_1.0-1_ppc64el.deb ...
255s Unpacking netplan.io (1.0-1) over (0.107.1-3) ...
255s Preparing to unpack .../15-libxmlb2_0.3.15-1build1_ppc64el.deb ...
255s Unpacking libxmlb2:ppc64el (0.3.15-1build1) over (0.3.15-1) ...
255s dpkg: libgpgme11:ppc64el: dependency problems, but removing anyway as you requested:
255s  libvolume-key1:ppc64el depends on libgpgme11 (>= 1.4.1).
255s  libjcat1:ppc64el depends on libgpgme11 (>= 1.2.0).
255s 
255s (Reading database ... 
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(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70157 files and directories currently installed.)
255s Removing libgpgme11:ppc64el (1.18.0-4ubuntu1) ...
255s Selecting previously unselected package libgpgme11t64:ppc64el.
255s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70151 files and directories currently installed.)
255s Preparing to unpack .../00-libgpgme11t64_1.18.0-4.1ubuntu3_ppc64el.deb ...
255s Unpacking libgpgme11t64:ppc64el (1.18.0-4.1ubuntu3) ...
255s Preparing to unpack .../01-libvolume-key1_0.3.12-7build1_ppc64el.deb ...
255s Unpacking libvolume-key1:ppc64el (0.3.12-7build1) over (0.3.12-5build2) ...
255s Preparing to unpack .../02-libqrtr-glib0_1.2.2-1ubuntu3_ppc64el.deb ...
255s Unpacking libqrtr-glib0:ppc64el (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ...
255s Preparing to unpack .../03-libqmi-glib5_1.35.2-0ubuntu1_ppc64el.deb ...
255s Unpacking libqmi-glib5:ppc64el (1.35.2-0ubuntu1) over (1.34.0-2) ...
255s Preparing to unpack .../04-libqmi-proxy_1.35.2-0ubuntu1_ppc64el.deb ...
255s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ...
255s Preparing to unpack .../05-libpolkit-agent-1-0_124-1ubuntu1_ppc64el.deb ...
255s Unpacking libpolkit-agent-1-0:ppc64el (124-1ubuntu1) over (124-1) ...
255s Preparing to unpack .../06-libpolkit-gobject-1-0_124-1ubuntu1_ppc64el.deb ...
255s Unpacking libpolkit-gobject-1-0:ppc64el (124-1ubuntu1) over (124-1) ...
255s Preparing to unpack .../07-libmm-glib0_1.23.4-0ubuntu1_ppc64el.deb ...
255s Unpacking libmm-glib0:ppc64el (1.23.4-0ubuntu1) over (1.22.0-3) ...
255s Preparing to unpack .../08-libmbim-glib4_1.31.2-0ubuntu2_ppc64el.deb ...
255s Unpacking libmbim-glib4:ppc64el (1.31.2-0ubuntu2) over (1.30.0-1) ...
255s Preparing to unpack .../09-libmbim-proxy_1.31.2-0ubuntu2_ppc64el.deb ...
255s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ...
255s Preparing to unpack .../10-libjson-glib-1.0-common_1.8.0-2build1_all.deb ...
255s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ...
255s Preparing to unpack .../11-libjson-glib-1.0-0_1.8.0-2build1_ppc64el.deb ...
255s Unpacking libjson-glib-1.0-0:ppc64el (1.8.0-2build1) over (1.8.0-2) ...
255s Preparing to unpack .../12-libgusb2_0.4.8-1build1_ppc64el.deb ...
255s Unpacking libgusb2:ppc64el (0.4.8-1build1) over (0.4.8-1) ...
255s Preparing to unpack .../13-libgudev-1.0-0_1%3a238-3ubuntu2_ppc64el.deb ...
255s Unpacking libgudev-1.0-0:ppc64el (1:238-3ubuntu2) over (1:238-3) ...
255s Preparing to unpack .../14-tnftp_20230507-2build1_ppc64el.deb ...
255s Unpacking tnftp (20230507-2build1) over (20230507-2) ...
255s Preparing to unpack .../15-tcpdump_4.99.4-3ubuntu2_ppc64el.deb ...
255s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ...
255s Preparing to unpack .../16-libsystemd0_255.4-1ubuntu5_ppc64el.deb ...
255s Unpacking libsystemd0:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
255s Setting up libsystemd0:ppc64el (255.4-1ubuntu5) ...
255s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70158 files and directories currently installed.)
255s Preparing to unpack .../systemd-dev_255.4-1ubuntu5_all.deb ...
255s Unpacking systemd-dev (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
255s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_ppc64el.deb ...
255s Unpacking libnss-systemd:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
255s Preparing to unpack .../libudev1_255.4-1ubuntu5_ppc64el.deb ...
255s Unpacking libudev1:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
255s Setting up libudev1:ppc64el (255.4-1ubuntu5) ...
255s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested:
255s  wget depends on libssl3 (>= 3.0.0).
255s  systemd-resolved depends on libssl3 (>= 3.0.0).
255s  systemd depends on libssl3 (>= 3.0.0).
255s  sudo depends on libssl3 (>= 3.0.0).
255s  rsync depends on libssl3 (>= 3.0.0).
255s  python3-cryptography depends on libssl3 (>= 3.0.0).
255s  openssl depends on libssl3 (>= 3.0.9).
255s  openssh-server depends on libssl3 (>= 3.0.10).
255s  openssh-client depends on libssl3 (>= 3.0.10).
255s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
255s  libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0).
255s  libssh-4:ppc64el depends on libssl3 (>= 3.0.0).
255s  libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0).
255s  libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0).
255s  libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0).
255s  libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0).
255s  libnvme1 depends on libssl3 (>= 3.0.0).
255s  libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0).
255s  libkmod2:ppc64el depends on libssl3 (>= 3.0.0).
255s  libfido2-1:ppc64el depends on libssl3 (>= 3.0.0).
255s  libcurl4:ppc64el depends on libssl3 (>= 3.0.0).
255s  libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0).
255s  kmod depends on libssl3 (>= 3.0.0).
255s  dhcpcd-base depends on libssl3 (>= 3.0.0).
255s  coreutils depends on libssl3 (>= 3.0.0).
255s  bind9-libs:ppc64el depends on libssl3 (>= 3.0.0).
255s 
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256s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ...
256s Selecting previously unselected package libssl3t64:ppc64el.
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256s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ...
256s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ...
256s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ...
256s (Reading database ... 
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256s Preparing to unpack .../systemd_255.4-1ubuntu5_ppc64el.deb ...
256s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
256s Preparing to unpack .../udev_255.4-1ubuntu5_ppc64el.deb ...
256s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
256s Preparing to unpack .../libsystemd-shared_255.4-1ubuntu5_ppc64el.deb ...
256s Unpacking libsystemd-shared:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
256s Setting up libsystemd-shared:ppc64el (255.4-1ubuntu5) ...
256s Setting up systemd-dev (255.4-1ubuntu5) ...
256s Setting up systemd (255.4-1ubuntu5) ...
258s (Reading database ... 
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258s Preparing to unpack .../00-systemd-sysv_255.4-1ubuntu5_ppc64el.deb ...
258s Unpacking systemd-sysv (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
258s Preparing to unpack .../01-libpam-systemd_255.4-1ubuntu5_ppc64el.deb ...
258s Unpacking libpam-systemd:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
258s Preparing to unpack .../02-systemd-timesyncd_255.4-1ubuntu5_ppc64el.deb ...
258s Unpacking systemd-timesyncd (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
258s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_ppc64el.deb ...
258s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ...
258s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_ppc64el.deb ...
258s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ...
258s Preparing to unpack .../05-rsync_3.2.7-1build1_ppc64el.deb ...
258s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ...
258s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_ppc64el.deb ...
258s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ...
258s Preparing to unpack .../07-openssl_3.0.13-0ubuntu2_ppc64el.deb ...
258s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
258s Preparing to unpack .../08-openssh-sftp-server_1%3a9.6p1-3ubuntu11_ppc64el.deb ...
258s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
258s Preparing to unpack .../09-openssh-client_1%3a9.6p1-3ubuntu11_ppc64el.deb ...
258s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
258s Preparing to unpack .../10-openssh-server_1%3a9.6p1-3ubuntu11_ppc64el.deb ...
258s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ...
258s Preparing to unpack .../11-libssh-4_0.10.6-2build1_ppc64el.deb ...
258s Unpacking libssh-4:ppc64el (0.10.6-2build1) over (0.10.6-2) ...
258s Preparing to unpack .../12-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ...
258s Unpacking libsasl2-modules:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
258s Preparing to unpack .../13-python3.12_3.12.2-4build3_ppc64el.deb ...
258s Unpacking python3.12 (3.12.2-4build3) over (3.12.2-1) ...
258s Preparing to unpack .../14-python3.12-minimal_3.12.2-4build3_ppc64el.deb ...
258s Unpacking python3.12-minimal (3.12.2-4build3) over (3.12.2-1) ...
258s Preparing to unpack .../15-libpython3.12-minimal_3.12.2-4build3_ppc64el.deb ...
258s Unpacking libpython3.12-minimal:ppc64el (3.12.2-4build3) over (3.12.2-1) ...
258s Preparing to unpack .../16-grub-ieee1275_2.12-1ubuntu5_ppc64el.deb ...
258s Unpacking grub-ieee1275 (2.12-1ubuntu5) over (2.12-1ubuntu4) ...
258s Preparing to unpack .../17-grub2-common_2.12-1ubuntu5_ppc64el.deb ...
258s Unpacking grub2-common (2.12-1ubuntu5) over (2.12-1ubuntu4) ...
258s Preparing to unpack .../18-grub-common_2.12-1ubuntu5_ppc64el.deb ...
258s Unpacking grub-common (2.12-1ubuntu5) over (2.12-1ubuntu4) ...
258s Preparing to unpack .../19-grub-ieee1275-bin_2.12-1ubuntu5_ppc64el.deb ...
258s Unpacking grub-ieee1275-bin (2.12-1ubuntu5) over (2.12-1ubuntu4) ...
258s dpkg: libparted2:ppc64el: dependency problems, but removing anyway as you requested:
258s  parted depends on libparted2 (= 3.6-3).
258s 
258s (Reading database ... 
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258s Removing libparted2:ppc64el (3.6-3) ...
258s Selecting previously unselected package libparted2t64:ppc64el.
258s (Reading database ... 
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258s Preparing to unpack .../0-libparted2t64_3.6-3.1build2_ppc64el.deb ...
258s Unpacking libparted2t64:ppc64el (3.6-3.1build2) ...
258s Preparing to unpack .../1-parted_3.6-3.1build2_ppc64el.deb ...
258s Unpacking parted (3.6-3.1build2) over (3.6-3) ...
258s Preparing to unpack .../2-python3.11_3.11.8-1build4_ppc64el.deb ...
259s Unpacking python3.11 (3.11.8-1build4) over (3.11.8-1) ...
259s Preparing to unpack .../3-python3.11-minimal_3.11.8-1build4_ppc64el.deb ...
259s Unpacking python3.11-minimal (3.11.8-1build4) over (3.11.8-1) ...
259s Preparing to unpack .../4-libpython3.11-minimal_3.11.8-1build4_ppc64el.deb ...
259s Unpacking libpython3.11-minimal:ppc64el (3.11.8-1build4) over (3.11.8-1) ...
259s Preparing to unpack .../5-libpython3.11-stdlib_3.11.8-1build4_ppc64el.deb ...
259s Unpacking libpython3.11-stdlib:ppc64el (3.11.8-1build4) over (3.11.8-1) ...
259s Preparing to unpack .../6-gnupg-utils_2.4.4-2ubuntu15_ppc64el.deb ...
259s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
259s Preparing to unpack .../7-gpg-agent_2.4.4-2ubuntu15_ppc64el.deb ...
259s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
259s Preparing to unpack .../8-gpg-wks-client_2.4.4-2ubuntu15_ppc64el.deb ...
259s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
259s Preparing to unpack .../9-gpg_2.4.4-2ubuntu15_ppc64el.deb ...
259s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
259s dpkg: libnpth0:ppc64el: dependency problems, but removing anyway as you requested:
259s  keyboxd depends on libnpth0 (>= 0.90).
259s  gpgv depends on libnpth0 (>= 0.90).
259s  gpgsm depends on libnpth0 (>= 0.90).
259s  dirmngr depends on libnpth0 (>= 0.90).
259s 
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259s Removing libnpth0:ppc64el (1.6-3build2) ...
259s Selecting previously unselected package libnpth0t64:ppc64el.
259s (Reading database ... 
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259s Preparing to unpack .../libnpth0t64_1.6-3.1_ppc64el.deb ...
259s Unpacking libnpth0t64:ppc64el (1.6-3.1) ...
259s Setting up libnpth0t64:ppc64el (1.6-3.1) ...
259s (Reading database ... 
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259s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_ppc64el.deb ...
259s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
259s Setting up gpgv (2.4.4-2ubuntu15) ...
259s (Reading database ... 
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259s Preparing to unpack .../dirmngr_2.4.4-2ubuntu15_ppc64el.deb ...
259s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
259s Preparing to unpack .../gnupg_2.4.4-2ubuntu15_all.deb ...
259s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
259s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_ppc64el.deb ...
259s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
259s Preparing to unpack .../gpgconf_2.4.4-2ubuntu15_ppc64el.deb ...
259s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
259s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_ppc64el.deb ...
259s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ...
259s dpkg: libreadline8:ppc64el: dependency problems, but removing anyway as you requested:
259s  libpython3.12-stdlib:ppc64el depends on libreadline8 (>= 7.0~beta).
259s  gawk depends on libreadline8 (>= 6.0).
259s  fdisk depends on libreadline8 (>= 6.0).
259s  bc depends on libreadline8 (>= 6.0).
259s 
259s (Reading database ... 
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259s Removing libreadline8:ppc64el (8.2-3) ...
259s Selecting previously unselected package libreadline8t64:ppc64el.
259s (Reading database ... 
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259s Preparing to unpack .../libreadline8t64_8.2-4_ppc64el.deb ...
259s Adding 'diversion of /lib/powerpc64le-linux-gnu/libhistory.so.8 to /lib/powerpc64le-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
259s Adding 'diversion of /lib/powerpc64le-linux-gnu/libhistory.so.8.2 to /lib/powerpc64le-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
259s Adding 'diversion of /lib/powerpc64le-linux-gnu/libreadline.so.8 to /lib/powerpc64le-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
259s Adding 'diversion of /lib/powerpc64le-linux-gnu/libreadline.so.8.2 to /lib/powerpc64le-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
259s Unpacking libreadline8t64:ppc64el (8.2-4) ...
260s Setting up libreadline8t64:ppc64el (8.2-4) ...
260s (Reading database ... 
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260s Preparing to unpack .../gawk_1%3a5.2.1-2build2_ppc64el.deb ...
260s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ...
260s Preparing to unpack .../fdisk_2.39.3-9ubuntu2_ppc64el.deb ...
260s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
260s Preparing to unpack .../bc_1.07.1-3ubuntu2_ppc64el.deb ...
260s Unpacking bc (1.07.1-3ubuntu2) over (1.07.1-3build1) ...
260s Preparing to unpack .../libpython3.12-stdlib_3.12.2-4build3_ppc64el.deb ...
260s Unpacking libpython3.12-stdlib:ppc64el (3.12.2-4build3) over (3.12.2-1) ...
260s Preparing to unpack .../perl-base_5.38.2-3.2_ppc64el.deb ...
260s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ...
260s Setting up perl-base (5.38.2-3.2) ...
260s (Reading database ... 
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260s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ...
260s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ...
261s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_ppc64el.deb ...
261s Unpacking python3-gdbm:ppc64el (3.12.2-3ubuntu1.1) over (3.11.5-1) ...
261s Preparing to unpack .../man-db_2.12.0-3build4_ppc64el.deb ...
261s Unpacking man-db (2.12.0-3build4) over (2.12.0-3) ...
261s dpkg: libgdbm-compat4:ppc64el: dependency problems, but removing anyway as you requested:
261s  libperl5.38:ppc64el depends on libgdbm-compat4 (>= 1.18-3).
261s 
261s (Reading database ... 
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261s Removing libgdbm-compat4:ppc64el (1.23-5) ...
261s dpkg: libgdbm6:ppc64el: dependency problems, but removing anyway as you requested:
261s  libperl5.38:ppc64el depends on libgdbm6 (>= 1.21).
261s 
261s Removing libgdbm6:ppc64el (1.23-5) ...
261s Selecting previously unselected package libgdbm6t64:ppc64el.
261s (Reading database ... 
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261s Preparing to unpack .../libgdbm6t64_1.23-5.1_ppc64el.deb ...
261s Unpacking libgdbm6t64:ppc64el (1.23-5.1) ...
261s Selecting previously unselected package libgdbm-compat4t64:ppc64el.
261s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_ppc64el.deb ...
261s Unpacking libgdbm-compat4t64:ppc64el (1.23-5.1) ...
261s dpkg: libperl5.38:ppc64el: dependency problems, but removing anyway as you requested:
261s  perl depends on libperl5.38 (= 5.38.2-3).
261s 
261s (Reading database ... 
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261s Removing libperl5.38:ppc64el (5.38.2-3) ...
261s Selecting previously unselected package libperl5.38t64:ppc64el.
261s (Reading database ... 
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261s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_ppc64el.deb ...
261s Unpacking libperl5.38t64:ppc64el (5.38.2-3.2) ...
261s Preparing to unpack .../perl_5.38.2-3.2_ppc64el.deb ...
261s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ...
261s dpkg: libdb5.3:ppc64el: dependency problems, but removing anyway as you requested:
261s  libsasl2-modules-db:ppc64el depends on libdb5.3.
261s  libpam-modules:ppc64el depends on libdb5.3.
261s  iproute2 depends on libdb5.3.
261s  apt-utils depends on libdb5.3.
261s 
261s (Reading database ... 
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261s Removing libdb5.3:ppc64el (5.3.28+dfsg2-4) ...
261s Selecting previously unselected package libdb5.3t64:ppc64el.
261s (Reading database ... 
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261s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_ppc64el.deb ...
261s Unpacking libdb5.3t64:ppc64el (5.3.28+dfsg2-6) ...
261s Preparing to unpack .../libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ...
261s Unpacking libsasl2-modules-db:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
261s Preparing to unpack .../libsasl2-2_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ...
261s Unpacking libsasl2-2:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ...
261s dpkg: libnvme1: dependency problems, but removing anyway as you requested:
261s  libblockdev-nvme3:ppc64el depends on libnvme1 (>= 1.7.1).
261s 
261s (Reading database ... 
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261s Removing libnvme1 (1.8-2) ...
261s Selecting previously unselected package libnvme1t64.
261s (Reading database ... 
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261s Preparing to unpack .../libnvme1t64_1.8-3_ppc64el.deb ...
261s Unpacking libnvme1t64 (1.8-3) ...
261s Preparing to unpack .../wget_1.21.4-1ubuntu2_ppc64el.deb ...
261s Unpacking wget (1.21.4-1ubuntu2) over (1.21.4-1ubuntu1) ...
261s dpkg: libcurl4:ppc64el: dependency problems, but removing anyway as you requested:
261s  curl depends on libcurl4 (= 8.5.0-2ubuntu2).
261s 
261s (Reading database ... 
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261s Removing libcurl4:ppc64el (8.5.0-2ubuntu2) ...
262s Selecting previously unselected package libcurl4t64:ppc64el.
262s (Reading database ... 
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262s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu8_ppc64el.deb ...
262s Unpacking libcurl4t64:ppc64el (8.5.0-2ubuntu8) ...
262s Preparing to unpack .../curl_8.5.0-2ubuntu8_ppc64el.deb ...
262s Unpacking curl (8.5.0-2ubuntu8) over (8.5.0-2ubuntu2) ...
262s dpkg: libpsl5:ppc64el: dependency problems, but removing anyway as you requested:
262s  libcurl3-gnutls:ppc64el depends on libpsl5 (>= 0.16.0).
262s 
262s (Reading database ... 
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262s Removing libpsl5:ppc64el (0.21.2-1build1) ...
262s Selecting previously unselected package libpsl5t64:ppc64el.
262s (Reading database ... 
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262s Preparing to unpack .../libpsl5t64_0.21.2-1.1_ppc64el.deb ...
262s Unpacking libpsl5t64:ppc64el (0.21.2-1.1) ...
262s dpkg: libarchive13:ppc64el: dependency problems, but removing anyway as you requested:
262s  fwupd depends on libarchive13 (>= 3.2.1).
262s 
262s (Reading database ... 
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262s Removing libarchive13:ppc64el (3.7.2-1ubuntu2) ...
262s Selecting previously unselected package libarchive13t64:ppc64el.
262s (Reading database ... 
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262s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_ppc64el.deb ...
262s Unpacking libarchive13t64:ppc64el (3.7.2-1.1ubuntu2) ...
262s Preparing to unpack .../fwupd_1.9.15-2_ppc64el.deb ...
262s Unpacking fwupd (1.9.15-2) over (1.9.14-1) ...
262s dpkg: libcurl3-gnutls:ppc64el: dependency problems, but removing anyway as you requested:
262s  libfwupd2:ppc64el depends on libcurl3-gnutls (>= 7.63.0).
262s 
262s (Reading database ... 
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262s Removing libcurl3-gnutls:ppc64el (8.5.0-2ubuntu2) ...
262s Selecting previously unselected package libcurl3t64-gnutls:ppc64el.
262s (Reading database ... 
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262s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu8_ppc64el.deb ...
262s Unpacking libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu8) ...
262s Preparing to unpack .../01-libfwupd2_1.9.15-2_ppc64el.deb ...
262s Unpacking libfwupd2:ppc64el (1.9.15-2) over (1.9.14-1) ...
262s Preparing to unpack .../02-libblockdev3_3.1.0-1build1_ppc64el.deb ...
262s Unpacking libblockdev3:ppc64el (3.1.0-1build1) over (3.1.0-1) ...
262s Preparing to unpack .../03-libblockdev-utils3_3.1.0-1build1_ppc64el.deb ...
262s Unpacking libblockdev-utils3:ppc64el (3.1.0-1build1) over (3.1.0-1) ...
262s Preparing to unpack .../04-libblockdev-swap3_3.1.0-1build1_ppc64el.deb ...
262s Unpacking libblockdev-swap3:ppc64el (3.1.0-1build1) over (3.1.0-1) ...
262s Preparing to unpack .../05-libblockdev-part3_3.1.0-1build1_ppc64el.deb ...
262s Unpacking libblockdev-part3:ppc64el (3.1.0-1build1) over (3.1.0-1) ...
262s Preparing to unpack .../06-libblockdev-nvme3_3.1.0-1build1_ppc64el.deb ...
262s Unpacking libblockdev-nvme3:ppc64el (3.1.0-1build1) over (3.1.0-1) ...
262s Preparing to unpack .../07-libblockdev-mdraid3_3.1.0-1build1_ppc64el.deb ...
262s Unpacking libblockdev-mdraid3:ppc64el (3.1.0-1build1) over (3.1.0-1) ...
262s Preparing to unpack .../08-libblockdev-loop3_3.1.0-1build1_ppc64el.deb ...
262s Unpacking libblockdev-loop3:ppc64el (3.1.0-1build1) over (3.1.0-1) ...
262s Preparing to unpack .../09-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ...
262s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
262s Preparing to unpack .../10-logsave_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ...
262s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
262s dpkg: libext2fs2:ppc64el: dependency problems, but removing anyway as you requested:
262s  libblockdev-fs3:ppc64el depends on libext2fs2 (>= 1.42.11).
262s  e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1).
262s  btrfs-progs depends on libext2fs2 (>= 1.42).
262s 
262s (Reading database ... 
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262s Removing libext2fs2:ppc64el (1.47.0-2ubuntu1) ...
262s Selecting previously unselected package libext2fs2t64:ppc64el.
262s (Reading database ... 
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262s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ...
262s Adding 'diversion of /lib/powerpc64le-linux-gnu/libe2p.so.2 to /lib/powerpc64le-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64'
262s Adding 'diversion of /lib/powerpc64le-linux-gnu/libe2p.so.2.3 to /lib/powerpc64le-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64'
262s Adding 'diversion of /lib/powerpc64le-linux-gnu/libext2fs.so.2 to /lib/powerpc64le-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64'
262s Adding 'diversion of /lib/powerpc64le-linux-gnu/libext2fs.so.2.4 to /lib/powerpc64le-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64'
262s Unpacking libext2fs2t64:ppc64el (1.47.0-2.4~exp1ubuntu2) ...
262s Setting up libext2fs2t64:ppc64el (1.47.0-2.4~exp1ubuntu2) ...
262s (Reading database ... 
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262s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ...
262s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ...
263s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested:
263s  btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27).
263s 
263s (Reading database ... 
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263s Removing libreiserfscore0 (1:3.6.27-7) ...
263s Selecting previously unselected package libreiserfscore0t64.
263s (Reading database ... 
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263s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_ppc64el.deb ...
263s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ...
263s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_ppc64el.deb ...
263s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ...
263s Preparing to unpack .../libblockdev-fs3_3.1.0-1build1_ppc64el.deb ...
263s Unpacking libblockdev-fs3:ppc64el (3.1.0-1build1) over (3.1.0-1) ...
263s Preparing to unpack .../libblockdev-crypto3_3.1.0-1build1_ppc64el.deb ...
263s Unpacking libblockdev-crypto3:ppc64el (3.1.0-1build1) over (3.1.0-1) ...
263s Preparing to unpack .../bolt_0.9.6-2build1_ppc64el.deb ...
263s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ...
263s dpkg: libglib2.0-0:ppc64el: dependency problems, but removing anyway as you requested:
263s  libnetplan0:ppc64el depends on libglib2.0-0 (>= 2.75.3).
263s  libjcat1:ppc64el depends on libglib2.0-0 (>= 2.75.3).
263s 
263s (Reading database ... 
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263s Removing libglib2.0-0:ppc64el (2.79.2-1~ubuntu1) ...
263s Selecting previously unselected package libglib2.0-0t64:ppc64el.
263s (Reading database ... 
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263s Preparing to unpack .../0-libglib2.0-0t64_2.79.3-3ubuntu5_ppc64el.deb ...
263s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
263s removed '/var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm'
263s Unpacking libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ...
263s Preparing to unpack .../1-libjcat1_0.2.0-2build2_ppc64el.deb ...
263s Unpacking libjcat1:ppc64el (0.2.0-2build2) over (0.2.0-2) ...
263s Preparing to unpack .../2-libldap2_2.6.7+dfsg-1~exp1ubuntu6_ppc64el.deb ...
263s Unpacking libldap2:ppc64el (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
263s Preparing to unpack .../3-ubuntu-pro-client-l10n_31.2.2_ppc64el.deb ...
263s Unpacking ubuntu-pro-client-l10n (31.2.2) over (31.1) ...
263s Preparing to unpack .../4-ubuntu-pro-client_31.2.2_ppc64el.deb ...
263s Unpacking ubuntu-pro-client (31.2.2) over (31.1) ...
263s Preparing to unpack .../5-python3-apt_2.7.7_ppc64el.deb ...
264s Unpacking python3-apt (2.7.7) over (2.7.6) ...
264s Preparing to unpack .../6-apt-utils_2.7.14_ppc64el.deb ...
264s Unpacking apt-utils (2.7.14) over (2.7.12) ...
264s dpkg: libapt-pkg6.0:ppc64el: dependency problems, but removing anyway as you requested:
264s  apt depends on libapt-pkg6.0 (>= 2.7.12).
264s 
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264s Removing libapt-pkg6.0:ppc64el (2.7.12) ...
264s dpkg: libnettle8:ppc64el: dependency problems, but removing anyway as you requested:
264s  librtmp1:ppc64el depends on libnettle8.
264s  libhogweed6:ppc64el depends on libnettle8.
264s  libgnutls30:ppc64el depends on libnettle8 (>= 3.9~).
264s 
264s Removing libnettle8:ppc64el (3.9.1-2) ...
264s Selecting previously unselected package libapt-pkg6.0t64:ppc64el.
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264s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_ppc64el.deb ...
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264s Selecting previously unselected package libnettle8t64:ppc64el.
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264s Preparing to unpack .../libnettle8t64_3.9.1-2.2_ppc64el.deb ...
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264s Setting up libnettle8t64:ppc64el (3.9.1-2.2) ...
264s dpkg: libhogweed6:ppc64el: dependency problems, but removing anyway as you requested:
264s  librtmp1:ppc64el depends on libhogweed6.
264s  libgnutls30:ppc64el depends on libhogweed6 (>= 3.6).
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264s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_ppc64el.deb ...
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264s Setting up libhogweed6t64:ppc64el (3.9.1-2.2) ...
264s dpkg: libgnutls30:ppc64el: dependency problems, but removing anyway as you requested:
264s  librtmp1:ppc64el depends on libgnutls30 (>= 3.7.2).
264s  apt depends on libgnutls30 (>= 3.8.1).
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264s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_ppc64el.deb ...
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264s Preparing to unpack .../apt_2.7.14_ppc64el.deb ...
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264s Setting up apt (2.7.14) ...
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265s Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2build6_ppc64el.deb ...
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265s Preparing to unpack .../liblzma5_5.6.0-0.2_ppc64el.deb ...
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265s Setting up liblzma5:ppc64el (5.6.0-0.2) ...
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265s Preparing to unpack .../libblkid1_2.39.3-9ubuntu2_ppc64el.deb ...
265s Unpacking libblkid1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
265s Setting up libblkid1:ppc64el (2.39.3-9ubuntu2) ...
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265s Preparing to unpack .../kmod_31+20240202-2ubuntu4_ppc64el.deb ...
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265s Preparing to unpack .../libselinux1_3.5-2ubuntu1_ppc64el.deb ...
265s Unpacking libselinux1:ppc64el (3.5-2ubuntu1) over (3.5-2build1) ...
265s Setting up libselinux1:ppc64el (3.5-2ubuntu1) ...
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265s Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1_all.deb ...
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265s Setting up libaudit-common (1:3.1.2-2.1) ...
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265s Preparing to unpack .../libcap-ng0_0.8.4-2build1_ppc64el.deb ...
265s Unpacking libcap-ng0:ppc64el (0.8.4-2build1) over (0.8.4-2) ...
265s Setting up libcap-ng0:ppc64el (0.8.4-2build1) ...
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265s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_ppc64el.deb ...
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265s Setting up libaudit1:ppc64el (1:3.1.2-2.1) ...
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266s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_ppc64el.deb ...
266s Unpacking libpam0g:ppc64el (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ...
266s Setting up libpam0g:ppc64el (1.5.3-5ubuntu3) ...
266s (Reading database ... 
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266s Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu3_ppc64el.deb ...
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266s Setting up libpam-modules-bin (1.5.3-5ubuntu3) ...
266s pam_namespace.service is a disabled or a static unit not running, not starting it.
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266s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu3_ppc64el.deb ...
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266s Setting up libpam-modules:ppc64el (1.5.3-5ubuntu3) ...
266s Installing new version of config file /etc/security/namespace.init ...
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266s Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu3_all.deb ...
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266s Setting up libpam-runtime (1.5.3-5ubuntu3) ...
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267s Preparing to unpack .../00-dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ...
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267s Preparing to unpack .../01-dbus-user-session_1.14.10-4ubuntu2_ppc64el.deb ...
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267s Preparing to unpack .../02-libapparmor1_4.0.0-beta3-0ubuntu2_ppc64el.deb ...
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267s Preparing to unpack .../03-libexpat1_2.6.1-2_ppc64el.deb ...
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267s Preparing to unpack .../04-dbus-system-bus-common_1.14.10-4ubuntu2_all.deb ...
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267s Preparing to unpack .../05-dbus-bin_1.14.10-4ubuntu2_ppc64el.deb ...
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267s Preparing to unpack .../07-dbus-daemon_1.14.10-4ubuntu2_ppc64el.deb ...
267s Unpacking dbus-daemon (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ...
267s Preparing to unpack .../08-libdbus-1-3_1.14.10-4ubuntu2_ppc64el.deb ...
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267s Preparing to unpack .../09-libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_ppc64el.deb ...
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267s Preparing to unpack .../10-libuuid1_2.39.3-9ubuntu2_ppc64el.deb ...
267s Unpacking libuuid1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ...
267s Setting up libuuid1:ppc64el (2.39.3-9ubuntu2) ...
267s (Reading database ... 
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267s Preparing to unpack .../libcryptsetup12_2%3a2.7.0-1ubuntu2_ppc64el.deb ...
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267s Setting up libseccomp2:ppc64el (2.5.5-1ubuntu2) ...
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267s Preparing to unpack .../mount_2.39.3-9ubuntu2_ppc64el.deb ...
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267s Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu1_ppc64el.deb ...
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267s Setting up zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu1) ...
267s Setting up libpython3.12-minimal:ppc64el (3.12.2-4build3) ...
267s Setting up libexpat1:ppc64el (2.6.1-2) ...
267s Setting up python3.12-minimal (3.12.2-4build3) ...
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268s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_ppc64el.deb ...
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269s dpkg: libpng16-16:ppc64el: dependency problems, but removing anyway as you requested:
269s  libfreetype6:ppc64el depends on libpng16-16 (>= 1.6.2-1).
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272s dpkg: libelf1:ppc64el: dependency problems, but removing anyway as you requested:
272s  linux-headers-6.8.0-11-generic depends on libelf1 (>= 0.144).
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272s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ...
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272s Preparing to unpack .../libtirpc3t64_1.3.4+ds-1.1_ppc64el.deb ...
272s Adding 'diversion of /lib/powerpc64le-linux-gnu/libtirpc.so.3 to /lib/powerpc64le-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
272s Adding 'diversion of /lib/powerpc64le-linux-gnu/libtirpc.so.3.0.0 to /lib/powerpc64le-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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272s dpkg: liburcu8:ppc64el: dependency problems, but removing anyway as you requested:
272s  xfsprogs depends on liburcu8 (>= 0.13.0).
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274s Selecting previously unselected package xdg-user-dirs.
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275s Preparing to unpack .../019-inetutils-telnet_2%3a2.5-3ubuntu3_ppc64el.deb ...
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275s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ...
275s Selecting previously unselected package manpages.
275s Preparing to unpack .../024-manpages_6.05.01-1_all.deb ...
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275s Preparing to unpack .../028-telnet_0.17+2.5-3ubuntu3_all.deb ...
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275s Preparing to unpack .../033-binutils-powerpc64le-linux-gnu_2.42-4ubuntu1_ppc64el.deb ...
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275s Selecting previously unselected package libllvm18:ppc64el.
275s Preparing to unpack .../038-libllvm18_1%3a18.1.2-1ubuntu2_ppc64el.deb ...
275s Unpacking libllvm18:ppc64el (1:18.1.2-1ubuntu2) ...
276s Selecting previously unselected package libclang-cpp18.
276s Preparing to unpack .../039-libclang-cpp18_1%3a18.1.2-1ubuntu2_ppc64el.deb ...
276s Unpacking libclang-cpp18 (1:18.1.2-1ubuntu2) ...
277s Selecting previously unselected package libbpfcc:ppc64el.
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277s Selecting previously unselected package ieee-data.
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277s Selecting previously unselected package python3-netaddr.
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277s Selecting previously unselected package bpfcc-tools.
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277s Selecting previously unselected package libclang1-18.
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277s Selecting previously unselected package bpftrace.
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277s Preparing to unpack .../049-dpkg-dev_1.22.6ubuntu5_all.deb ...
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277s Preparing to unpack .../050-libdpkg-perl_1.22.6ubuntu5_all.deb ...
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277s Selecting previously unselected package fonts-dejavu-mono.
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277s Selecting previously unselected package fonts-dejavu-core.
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278s Selecting previously unselected package fontconfig-config.
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278s Preparing to unpack .../054-libprotobuf-c1_1.4.1-1ubuntu3_ppc64el.deb ...
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278s Preparing to unpack .../058-jq_1.7.1-3_ppc64el.deb ...
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278s Selecting previously unselected package libaio1t64:ppc64el.
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278s Selecting previously unselected package libc-dev-bin.
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278s Selecting previously unselected package libfontconfig1:ppc64el.
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278s Selecting previously unselected package libjpeg-turbo8:ppc64el.
278s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ...
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278s Selecting previously unselected package libjpeg8:ppc64el.
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278s Selecting previously unselected package libdeflate0:ppc64el.
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278s Selecting previously unselected package libjbig0:ppc64el.
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278s Selecting previously unselected package liblerc4:ppc64el.
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278s Selecting previously unselected package libwebp7:ppc64el.
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278s Selecting previously unselected package libtiff6:ppc64el.
278s Preparing to unpack .../071-libtiff6_4.5.1+git230720-4ubuntu1_ppc64el.deb ...
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278s Selecting previously unselected package libxpm4:ppc64el.
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278s Selecting previously unselected package libgd3:ppc64el.
278s Preparing to unpack .../073-libgd3_2.3.3-9ubuntu3_ppc64el.deb ...
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278s Selecting previously unselected package libc-devtools.
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278s Selecting previously unselected package linux-libc-dev:ppc64el.
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278s Selecting previously unselected package libcrypt-dev:ppc64el.
278s Preparing to unpack .../076-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ...
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278s Selecting previously unselected package rpcsvc-proto.
278s Preparing to unpack .../077-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ...
278s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
278s Selecting previously unselected package libc6-dev:ppc64el.
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278s Unpacking libc6-dev:ppc64el (2.39-0ubuntu6) ...
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279s Unpacking libevent-core-2.1-7:ppc64el (2.1.12-stable-9build1) over (2.1.12-stable-9) ...
279s Preparing to unpack .../080-libftdi1-2_1.5-6build4_ppc64el.deb ...
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279s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ...
279s Selecting previously unselected package libunwind8:ppc64el.
279s Preparing to unpack .../082-libunwind8_1.6.2-3_ppc64el.deb ...
279s Unpacking libunwind8:ppc64el (1.6.2-3) ...
279s Selecting previously unselected package linux-modules-6.8.0-20-generic.
279s Preparing to unpack .../083-linux-modules-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ...
279s Unpacking linux-modules-6.8.0-20-generic (6.8.0-20.20) ...
279s Selecting previously unselected package linux-image-6.8.0-20-generic.
279s Preparing to unpack .../084-linux-image-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ...
279s Unpacking linux-image-6.8.0-20-generic (6.8.0-20.20) ...
279s Selecting previously unselected package linux-modules-extra-6.8.0-20-generic.
279s Preparing to unpack .../085-linux-modules-extra-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ...
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281s Unpacking linux-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
281s Preparing to unpack .../087-linux-image-generic_6.8.0-20.20+1_ppc64el.deb ...
281s Unpacking linux-image-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
281s Preparing to unpack .../088-linux-virtual_6.8.0-20.20+1_ppc64el.deb ...
281s Unpacking linux-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
281s Preparing to unpack .../089-linux-image-virtual_6.8.0-20.20+1_ppc64el.deb ...
281s Unpacking linux-image-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
281s Preparing to unpack .../090-linux-headers-virtual_6.8.0-20.20+1_ppc64el.deb ...
281s Unpacking linux-headers-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
281s Selecting previously unselected package linux-headers-6.8.0-20.
281s Preparing to unpack .../091-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ...
281s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ...
284s Selecting previously unselected package linux-headers-6.8.0-20-generic.
284s Preparing to unpack .../092-linux-headers-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ...
284s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
285s Preparing to unpack .../093-linux-headers-generic_6.8.0-20.20+1_ppc64el.deb ...
285s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ...
285s Selecting previously unselected package linux-tools-common.
285s Preparing to unpack .../094-linux-tools-common_6.8.0-20.20_all.deb ...
285s Unpacking linux-tools-common (6.8.0-20.20) ...
285s Selecting previously unselected package linux-tools-6.8.0-20.
285s Preparing to unpack .../095-linux-tools-6.8.0-20_6.8.0-20.20_ppc64el.deb ...
285s Unpacking linux-tools-6.8.0-20 (6.8.0-20.20) ...
285s Selecting previously unselected package linux-tools-6.8.0-20-generic.
285s Preparing to unpack .../096-linux-tools-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ...
285s Unpacking linux-tools-6.8.0-20-generic (6.8.0-20.20) ...
285s Selecting previously unselected package manpages-dev.
285s Preparing to unpack .../097-manpages-dev_6.05.01-1_all.deb ...
285s Unpacking manpages-dev (6.05.01-1) ...
286s Preparing to unpack .../098-python3-distutils_3.12.2-3ubuntu1.1_all.deb ...
286s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ...
286s Preparing to unpack .../099-python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ...
286s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ...
286s Preparing to unpack .../100-python3-pyrsistent_0.20.0-1build1_ppc64el.deb ...
286s Unpacking python3-pyrsistent:ppc64el (0.20.0-1build1) over (0.20.0-1) ...
286s Preparing to unpack .../101-python3-typing-extensions_4.10.0-1_all.deb ...
286s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ...
286s Selecting previously unselected package ubuntu-kernel-accessories.
286s Preparing to unpack .../102-ubuntu-kernel-accessories_1.536build1_ppc64el.deb ...
286s Unpacking ubuntu-kernel-accessories (1.536build1) ...
286s Preparing to unpack .../103-kpartx_0.9.4-5ubuntu6_ppc64el.deb ...
286s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ...
286s Setting up pinentry-curses (1.2.1-3ubuntu4) ...
286s Setting up motd-news-config (13ubuntu8) ...
286s Setting up libtext-iconv-perl:ppc64el (1.7-8build2) ...
286s Setting up libtext-charwidth-perl:ppc64el (0.04-11build2) ...
286s Setting up libsharpyuv0:ppc64el (1.3.2-0.4build2) ...
286s Setting up liburcu8t64:ppc64el (0.14.0-3.1) ...
286s Setting up tcpdump (4.99.4-3ubuntu2) ...
286s Setting up libibverbs1:ppc64el (50.0-2build1) ...
286s Setting up systemd-sysv (255.4-1ubuntu5) ...
286s Setting up ubuntu-kernel-accessories (1.536build1) ...
286s Setting up libapparmor1:ppc64el (4.0.0-beta3-0ubuntu2) ...
286s Setting up libatm1t64:ppc64el (1:2.5.1-5.1) ...
286s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
286s Setting up libgdbm6t64:ppc64el (1.23-5.1) ...
286s Setting up bsdextrautils (2.39.3-9ubuntu2) ...
286s Setting up libxpm4:ppc64el (1:3.5.17-1build1) ...
286s Setting up libgdbm-compat4t64:ppc64el (1.23-5.1) ...
286s Setting up xdg-user-dirs (0.18-1) ...
286s Setting up ibverbs-providers:ppc64el (50.0-2build1) ...
286s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ...
286s Setting up libmagic-mgc (1:5.45-3) ...
286s Setting up gawk (1:5.2.1-2build2) ...
286s Setting up libjq1:ppc64el (1.7.1-3) ...
286s Setting up manpages (6.05.01-1) ...
286s Setting up libtirpc-common (1.3.4+ds-1.1) ...
286s Setting up libbrotli1:ppc64el (1.1.0-2build1) ...
286s Setting up libsqlite3-0:ppc64el (3.45.1-1ubuntu1) ...
286s Setting up libsasl2-modules:ppc64el (2.1.28+dfsg1-5ubuntu1) ...
286s Setting up libuv1t64:ppc64el (1.48.0-1.1) ...
286s Setting up libmagic1t64:ppc64el (1:5.45-3) ...
286s Setting up rsyslog (8.2312.0-3ubuntu7) ...
286s info: The user `syslog' is already a member of `adm'.
287s Setting up binutils-common:ppc64el (2.42-4ubuntu1) ...
287s Setting up libpsl5t64:ppc64el (0.21.2-1.1) ...
287s Setting up libnghttp2-14:ppc64el (1.59.0-1build1) ...
287s Setting up libdeflate0:ppc64el (1.19-1) ...
287s Setting up linux-libc-dev:ppc64el (6.8.0-20.20) ...
287s Setting up bc (1.07.1-3ubuntu2) ...
287s Setting up libctf-nobfd0:ppc64el (2.42-4ubuntu1) ...
287s Setting up libnss-systemd:ppc64el (255.4-1ubuntu5) ...
287s Setting up krb5-locales (1.20.1-6ubuntu1) ...
287s Setting up libcom-err2:ppc64el (1.47.0-2.4~exp1ubuntu2) ...
287s Setting up file (1:5.45-3) ...
287s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ...
287s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ...
287s Setting up libunwind8:ppc64el (1.6.2-3) ...
287s Setting up libprotobuf-c1:ppc64el (1.4.1-1ubuntu3) ...
287s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ...
287s Setting up xxd (2:9.1.0016-1ubuntu6) ...
287s Setting up libsframe1:ppc64el (2.42-4ubuntu1) ...
287s Setting up libelf1t64:ppc64el (0.190-1.1build2) ...
287s Setting up libkrb5support0:ppc64el (1.20.1-6ubuntu1) ...
287s Setting up libdw1t64:ppc64el (0.190-1.1build2) ...
287s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ...
287s Setting up eject (2.39.3-9ubuntu2) ...
287s Setting up apparmor (4.0.0-beta3-0ubuntu2) ...
287s Installing new version of config file /etc/apparmor.d/abstractions/authentication ...
287s Installing new version of config file /etc/apparmor.d/abstractions/crypto ...
287s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ...
287s Installing new version of config file /etc/apparmor.d/abstractions/openssl ...
288s Installing new version of config file /etc/apparmor.d/code ...
288s Installing new version of config file /etc/apparmor.d/firefox ...
289s Reloading AppArmor profiles 
289s Setting up libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ...
289s No schema files found: doing nothing.
289s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
289s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
289s Setting up vim-common (2:9.1.0016-1ubuntu6) ...
289s Setting up gcc-13-base:ppc64el (13.2.0-21ubuntu1) ...
289s Setting up libqrtr-glib0:ppc64el (1.2.2-1ubuntu3) ...
289s Setting up libslang2:ppc64el (2.3.3-3build1) ...
289s Setting up libnvme1t64 (1.8-3) ...
289s Setting up mtr-tiny (0.95-1.1build1) ...
289s Setting up gnupg-l10n (2.4.4-2ubuntu15) ...
289s Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build6) ...
289s Setting up libdbus-1-3:ppc64el (1.14.10-4ubuntu2) ...
289s Setting up xz-utils (5.6.0-0.2) ...
289s Setting up perl-modules-5.38 (5.38.2-3.2) ...
289s Setting up libproc2-0:ppc64el (2:4.0.4-4ubuntu2) ...
289s Setting up fonts-dejavu-mono (2.37-8) ...
289s Setting up libpng16-16t64:ppc64el (1.6.43-3) ...
289s Setting up systemd-timesyncd (255.4-1ubuntu5) ...
290s Setting up libevent-core-2.1-7:ppc64el (2.1.12-stable-9build1) ...
290s Setting up libss2:ppc64el (1.47.0-2.4~exp1ubuntu2) ...
290s Setting up usb.ids (2024.03.18-1) ...
290s Setting up sudo (1.9.15p5-3ubuntu3) ...
290s Setting up fonts-dejavu-core (2.37-8) ...
290s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ...
290s Setting up gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) ...
290s Setting up libk5crypto3:ppc64el (1.20.1-6ubuntu1) ...
290s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
290s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ...
290s Setting up libwebp7:ppc64el (1.3.2-0.4build2) ...
290s Setting up libfdisk1:ppc64el (2.39.3-9ubuntu2) ...
290s Setting up libdb5.3t64:ppc64el (5.3.28+dfsg2-6) ...
290s Setting up libdevmapper1.02.1:ppc64el (2:1.02.185-3ubuntu2) ...
290s Setting up libaio1t64:ppc64el (0.3.113-6) ...
290s Setting up python-apt-common (2.7.7) ...
290s Setting up mount (2.39.3-9ubuntu2) ...
290s Setting up dmsetup (2:1.02.185-3ubuntu2) ...
290s Setting up uuid-runtime (2.39.3-9ubuntu2) ...
291s uuidd.service is a disabled or a static unit not running, not starting it.
291s Setting up libmm-glib0:ppc64el (1.23.4-0ubuntu1) ...
291s Setting up groff-base (1.23.0-3build1) ...
291s Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ...
291s Setting up libplymouth5:ppc64el (24.004.60-1ubuntu6) ...
291s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ...
291s Setting up jq (1.7.1-3) ...
291s Setting up procps (2:4.0.4-4ubuntu2) ...
291s Setting up gpgconf (2.4.4-2ubuntu15) ...
291s Setting up libcryptsetup12:ppc64el (2:2.7.0-1ubuntu2) ...
291s Setting up libgirepository-1.0-1:ppc64el (1.79.1-1ubuntu6) ...
291s Setting up libjson-glib-1.0-common (1.8.0-2build1) ...
291s Setting up libkrb5-3:ppc64el (1.20.1-6ubuntu1) ...
291s Setting up libpython3.11-minimal:ppc64el (3.11.8-1build4) ...
291s Setting up libusb-1.0-0:ppc64el (2:1.0.27-1) ...
291s Setting up libperl5.38t64:ppc64el (5.38.2-3.2) ...
291s Setting up tnftp (20230507-2build1) ...
291s Setting up libbinutils:ppc64el (2.42-4ubuntu1) ...
291s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ...
291s Setting up libfido2-1:ppc64el (1.14.0-1build1) ...
291s Setting up libc-dev-bin (2.39-0ubuntu6) ...
291s Setting up openssl (3.0.13-0ubuntu2) ...
291s Setting up linux-modules-6.8.0-20-generic (6.8.0-20.20) ...
295s Setting up linux-tools-common (6.8.0-20.20) ...
295s Setting up readline-common (8.2-4) ...
295s Setting up libxml2:ppc64el (2.9.14+dfsg-1.3ubuntu2) ...
295s Setting up libxmuu1:ppc64el (2:1.1.3-3build1) ...
295s Setting up dbus-bin (1.14.10-4ubuntu2) ...
295s Setting up info (7.1-3build1) ...
295s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ...
295s Setting up gpg (2.4.4-2ubuntu15) ...
295s Setting up libgudev-1.0-0:ppc64el (1:238-3ubuntu2) ...
295s Setting up libpolkit-gobject-1-0:ppc64el (124-1ubuntu1) ...
295s Setting up libbpf1:ppc64el (1:1.3.0-2build1) ...
295s Setting up libmbim-glib4:ppc64el (1.31.2-0ubuntu2) ...
295s Setting up rsync (3.2.7-1build1) ...
295s rsync.service is a disabled or a static unit not running, not starting it.
295s Setting up libudisks2-0:ppc64el (2.10.1-6) ...
295s Setting up libkmod2:ppc64el (31+20240202-2ubuntu4) ...
295s Setting up bolt (0.9.6-2build1) ...
296s bolt.service is a disabled or a static unit not running, not starting it.
296s Setting up libllvm18:ppc64el (1:18.1.2-1ubuntu2) ...
296s Setting up gnupg-utils (2.4.4-2ubuntu15) ...
296s Setting up initramfs-tools-bin (0.142ubuntu23) ...
296s Setting up libctf0:ppc64el (2.42-4ubuntu1) ...
296s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
296s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ...
296s Setting up python3.11-minimal (3.11.8-1build4) ...
297s Setting up libclang1-18 (1:18.1.2-1ubuntu2) ...
297s Setting up manpages-dev (6.05.01-1) ...
297s Setting up linux-modules-extra-6.8.0-20-generic (6.8.0-20.20) ...
299s Setting up apt-utils (2.7.14) ...
299s Setting up gpg-agent (2.4.4-2ubuntu15) ...
299s Setting up libpython3.12-stdlib:ppc64el (3.12.2-4build3) ...
299s Setting up wget (1.21.4-1ubuntu2) ...
299s Setting up fontconfig-config (2.15.0-1.1ubuntu1) ...
300s Setting up libxmlb2:ppc64el (0.3.15-1build1) ...
300s Setting up libpython3.11-stdlib:ppc64el (3.11.8-1build4) ...
300s Setting up python3.12 (3.12.2-4build3) ...
301s Setting up gpgsm (2.4.4-2ubuntu15) ...
301s Setting up inetutils-telnet (2:2.5-3ubuntu3) ...
301s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ...
301s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ...
301s update-initramfs: deferring update (trigger activated)
302s e2scrub_all.service is a disabled or a static unit not running, not starting it.
302s Setting up linux-tools-6.8.0-20 (6.8.0-20.20) ...
302s Setting up libparted2t64:ppc64el (3.6-3.1build2) ...
302s Setting up linux-headers-generic (6.8.0-20.20+1) ...
302s Setting up dbus-daemon (1.14.10-4ubuntu2) ...
302s Setting up libmbim-proxy (1.31.2-0ubuntu2) ...
302s Setting up vim-tiny (2:9.1.0016-1ubuntu6) ...
302s Setting up kmod (31+20240202-2ubuntu4) ...
302s Setting up libnetplan1:ppc64el (1.0-1) ...
302s Setting up man-db (2.12.0-3build4) ...
302s Updating database of manual pages ...
305s man-db.service is a disabled or a static unit not running, not starting it.
305s Setting up fdisk (2.39.3-9ubuntu2) ...
305s Setting up libjson-glib-1.0-0:ppc64el (1.8.0-2build1) ...
305s Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-5ubuntu1) ...
305s Setting up libftdi1-2:ppc64el (1.5-6build4) ...
305s Setting up perl (5.38.2-3.2) ...
305s Setting up libfreetype6:ppc64el (2.13.2+dfsg-1build2) ...
305s Setting up linux-tools-6.8.0-20-generic (6.8.0-20.20) ...
305s Setting up gir1.2-girepository-2.0:ppc64el (1.79.1-1ubuntu6) ...
305s Setting up dbus (1.14.10-4ubuntu2) ...
305s A reboot is required to replace the running dbus-daemon.
305s Please reboot the system when convenient.
305s Setting up shared-mime-info (2.4-1build1) ...
306s Setting up libblockdev-utils3:ppc64el (3.1.0-1build1) ...
306s Setting up libgssapi-krb5-2:ppc64el (1.20.1-6ubuntu1) ...
306s Setting up udev (255.4-1ubuntu5) ...
307s Setting up ftp (20230507-2build1) ...
307s Setting up keyboxd (2.4.4-2ubuntu15) ...
307s Setting up libdpkg-perl (1.22.6ubuntu5) ...
307s Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-5ubuntu1) ...
307s Setting up libssh-4:ppc64el (0.10.6-2build1) ...
307s Setting up libblockdev-nvme3:ppc64el (3.1.0-1build1) ...
307s Setting up libblockdev-fs3:ppc64el (3.1.0-1build1) ...
307s Setting up ieee-data (20220827.1) ...
307s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu1) ...
307s Setting up kpartx (0.9.4-5ubuntu6) ...
307s Setting up libpam-systemd:ppc64el (255.4-1ubuntu5) ...
307s Setting up libpolkit-agent-1-0:ppc64el (124-1ubuntu1) ...
307s Setting up libc6-dev:ppc64el (2.39-0ubuntu6) ...
307s Setting up libgpgme11t64:ppc64el (1.18.0-4.1ubuntu3) ...
307s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu1) ...
307s Setting up binutils-powerpc64le-linux-gnu (2.42-4ubuntu1) ...
307s Setting up netplan-generator (1.0-1) ...
307s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator'
307s Setting up initramfs-tools-core (0.142ubuntu23) ...
307s Setting up libclang-cpp18 (1:18.1.2-1ubuntu2) ...
307s Setting up libbpfcc:ppc64el (0.29.1+ds-1ubuntu4) ...
307s Setting up libarchive13t64:ppc64el (3.7.2-1.1ubuntu2) ...
307s Setting up libldap2:ppc64el (2.6.7+dfsg-1~exp1ubuntu6) ...
307s Setting up libpython3-stdlib:ppc64el (3.12.2-0ubuntu1) ...
307s Setting up systemd-resolved (255.4-1ubuntu5) ...
308s Setting up python3.11 (3.11.8-1build4) ...
309s Setting up telnet (0.17+2.5-3ubuntu3) ...
309s Setting up initramfs-tools (0.142ubuntu23) ...
309s update-initramfs: deferring update (trigger activated)
309s Setting up libblockdev-mdraid3:ppc64el (3.1.0-1build1) ...
309s Setting up linux-headers-virtual (6.8.0-20.20+1) ...
309s Setting up libcurl4t64:ppc64el (8.5.0-2ubuntu8) ...
309s Setting up bpftrace (0.20.2-1ubuntu1) ...
309s Setting up bind9-libs:ppc64el (1:9.18.24-0ubuntu3) ...
309s Setting up linux-image-6.8.0-20-generic (6.8.0-20.20) ...
312s I: /boot/vmlinux is now a symlink to vmlinux-6.8.0-20-generic
312s I: /boot/initrd.img is now a symlink to initrd.img-6.8.0-20-generic
312s Setting up libtirpc3t64:ppc64el (1.3.4+ds-1.1) ...
312s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ...
312s Setting up libblockdev-swap3:ppc64el (3.1.0-1build1) ...
312s Setting up plymouth (24.004.60-1ubuntu6) ...
312s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic
312s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
318s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
319s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
319s Setting up iproute2 (6.1.0-1ubuntu5) ...
319s Setting up openssh-client (1:9.6p1-3ubuntu11) ...
319s Setting up libgusb2:ppc64el (0.4.8-1build1) ...
319s Setting up btrfs-progs (6.6.3-1.1build1) ...
319s Setting up libblockdev-loop3:ppc64el (3.1.0-1build1) ...
319s Setting up libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu8) ...
319s Setting up parted (3.6-3.1build2) ...
319s Setting up libqmi-glib5:ppc64el (1.35.2-0ubuntu1) ...
319s Setting up python3 (3.12.2-0ubuntu1) ...
319s Setting up binutils (2.42-4ubuntu1) ...
319s Setting up libblockdev3:ppc64el (3.1.0-1build1) ...
319s Setting up libjcat1:ppc64el (0.2.0-2build2) ...
319s Setting up multipath-tools (0.9.4-5ubuntu6) ...
320s Setting up dpkg-dev (1.22.6ubuntu5) ...
320s Setting up libblockdev-part3:ppc64el (3.1.0-1build1) ...
320s Setting up dirmngr (2.4.4-2ubuntu15) ...
320s Setting up dbus-user-session (1.14.10-4ubuntu2) ...
320s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ...
320s update-initramfs: deferring update (trigger activated)
320s Setting up python3-cryptography (41.0.7-4build2) ...
321s Setting up python3-gi (3.47.0-3build1) ...
321s Setting up libgd3:ppc64el (2.3.3-9ubuntu3) ...
321s Setting up python3-typing-extensions (4.10.0-1) ...
321s Setting up lsof (4.95.0-1build2) ...
321s Setting up python3-pyrsistent:ppc64el (0.20.0-1build1) ...
321s Setting up python3-netaddr (0.8.0-2ubuntu1) ...
321s Setting up libnsl2:ppc64el (1.3.0-3build2) ...
321s Setting up gnupg (2.4.4-2ubuntu15) ...
321s Setting up python3-netplan (1.0-1) ...
321s Setting up curl (8.5.0-2ubuntu8) ...
321s Setting up libvolume-key1:ppc64el (0.3.12-7build1) ...
322s Setting up linux-image-virtual (6.8.0-20.20+1) ...
322s Setting up bind9-host (1:9.18.24-0ubuntu3) ...
322s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ...
322s Setting up python3-bpfcc (0.29.1+ds-1ubuntu4) ...
322s Setting up libc-devtools (2.39-0ubuntu6) ...
322s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ...
322s Setting up python3-distutils (3.12.2-3ubuntu1.1) ...
322s python3.12: can't get files for byte-compilation
322s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ...
322s Setting up linux-image-generic (6.8.0-20.20+1) ...
322s Setting up python3-dbus (1.3.2-5build2) ...
323s Setting up python3-setuptools (68.1.2-2ubuntu1) ...
323s Setting up gpg-wks-client (2.4.4-2ubuntu15) ...
323s Setting up openssh-server (1:9.6p1-3ubuntu11) ...
324s Replacing config file /etc/ssh/sshd_config with new version
325s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket.

327s Setting up linux-generic (6.8.0-20.20+1) ...
327s Setting up libblockdev-crypto3:ppc64el (3.1.0-1build1) ...
327s Setting up python3-gdbm:ppc64el (3.12.2-3ubuntu1.1) ...
327s Setting up python3-apt (2.7.7) ...
327s Setting up libfwupd2:ppc64el (1.9.15-2) ...
327s Setting up python3-yaml (6.0.1-2build1) ...
327s Setting up libqmi-proxy (1.35.2-0ubuntu1) ...
327s Setting up netplan.io (1.0-1) ...
327s Setting up linux-virtual (6.8.0-20.20+1) ...
327s Setting up grub-common (2.12-1ubuntu5) ...
328s Setting up bpfcc-tools (0.29.1+ds-1ubuntu4) ...
328s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ...
328s Setting up ubuntu-pro-client (31.2.2) ...
330s Setting up fwupd (1.9.15-2) ...
330s fwupd-offline-update.service is a disabled or a static unit not running, not starting it.
330s fwupd-refresh.service is a disabled or a static unit not running, not starting it.
330s Setting up ubuntu-pro-client-l10n (31.2.2) ...
330s Setting up udisks2 (2.10.1-6) ...
331s Setting up grub2-common (2.12-1ubuntu5) ...
331s Setting up grub-ieee1275-bin (2.12-1ubuntu5) ...
331s Setting up grub-ieee1275 (2.12-1ubuntu5) ...
331s Installing for powerpc-ieee1275 platform.
331s Installation finished. No error reported.
331s Sourcing file `/etc/default/grub'
331s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
331s Generating grub configuration file ...
332s Found linux image: /boot/vmlinux-6.8.0-20-generic
332s Found linux image: /boot/vmlinux-6.8.0-11-generic
332s Found initrd image: /boot/initrd.img-6.8.0-11-generic
332s Warning: os-prober will not be executed to detect other bootable partitions.
332s Systems on them will not be added to the GRUB boot configuration.
332s Check GRUB_DISABLE_OS_PROBER documentation entry.
332s Adding boot menu entry for UEFI Firmware Settings ...
332s done
332s Processing triggers for ufw (0.36.2-5) ...
332s Processing triggers for systemd (255.4-1ubuntu5) ...
332s Processing triggers for debianutils (5.17) ...
332s Processing triggers for install-info (7.1-3build1) ...
332s Processing triggers for libc-bin (2.39-0ubuntu6) ...
332s Processing triggers for initramfs-tools (0.142ubuntu23) ...
332s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic
332s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
338s Processing triggers for linux-image-6.8.0-20-generic (6.8.0-20.20) ...
338s /etc/kernel/postinst.d/initramfs-tools:
338s update-initramfs: Generating /boot/initrd.img-6.8.0-20-generic
338s W: No lz4 in /usr/bin:/sbin:/bin, using gzip
344s /etc/kernel/postinst.d/zz-update-grub:
344s Sourcing file `/etc/default/grub'
344s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg'
344s Generating grub configuration file ...
345s Found linux image: /boot/vmlinux-6.8.0-20-generic
345s Found initrd image: /boot/initrd.img-6.8.0-20-generic
345s Found linux image: /boot/vmlinux-6.8.0-11-generic
345s Found initrd image: /boot/initrd.img-6.8.0-11-generic
345s Warning: os-prober will not be executed to detect other bootable partitions.
345s Systems on them will not be added to the GRUB boot configuration.
345s Check GRUB_DISABLE_OS_PROBER documentation entry.
345s Adding boot menu entry for UEFI Firmware Settings ...
345s done
346s Reading package lists...
346s Building dependency tree...
346s Reading state information...
347s The following packages will be REMOVED:
347s   libaio1* libnetplan0* python3-distutils* python3-lib2to3*
347s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded.
347s After this operation, 1613 kB disk space will be freed.
347s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 112169 files and directories currently installed.)
347s Removing libaio1:ppc64el (0.3.113-5) ...
347s Removing libnetplan0:ppc64el (0.107.1-3) ...
347s Removing python3-distutils (3.12.2-3ubuntu1.1) ...
347s Removing python3-lib2to3 (3.12.2-3ubuntu1.1) ...
347s Processing triggers for libc-bin (2.39-0ubuntu6) ...
347s autopkgtest [06:32:33]: rebooting testbed after setup commands that affected boot
386s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
397s autopkgtest [06:33:23]: testbed running kernel: Linux 6.8.0-20-generic #20-Ubuntu SMP Mon Mar 18 11:46:05 UTC 2024
400s autopkgtest [06:33:26]: @@@@@@@@@@@@@@@@@@@@ apt-source ray
403s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe ray 2.3.1-8build1 (dsc) [2229 B]
403s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe ray 2.3.1-8build1 (tar) [450 kB]
403s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe ray 2.3.1-8build1 (diff) [213 kB]
403s gpgv: Signature made Wed Mar 13 18:35:20 2024 UTC
403s gpgv:                using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D
403s gpgv:                issuer "steve.langasek@ubuntu.com"
403s gpgv: Can't check signature: No public key
403s dpkg-source: warning: cannot verify inline signature for ./ray_2.3.1-8build1.dsc: no acceptable signature found
403s autopkgtest [06:33:29]: testing package ray version 2.3.1-8build1
405s autopkgtest [06:33:31]: build not needed
406s autopkgtest [06:33:32]: test run-unit-test: preparing testbed
409s Reading package lists...
409s Building dependency tree...
409s Reading state information...
409s Starting pkgProblemResolver with broken count: 0
409s Starting 2 pkgProblemResolver with broken count: 0
409s Done
410s The following additional packages will be installed:
410s   fontconfig libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdatrie1
410s   libdrm-amdgpu1 libevent-pthreads-2.1-7 libfabric1 libgfortran5 libgomp1
410s   libgraphite2-3 libharfbuzz0b libhsa-runtime64-1 libhsakmt1 libhwloc-plugins
410s   libhwloc15 libice6 liblapack3 libllvm17t64 libmunge2 libopenmpi3t64
410s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
410s   libpaper1 libpciaccess0 libpixman-1-0 libpmix2t64 librdmacm1t64 libsm6
410s   libtcl8.6 libthai-data libthai0 libtk8.6 libucx0 libxcb-render0 libxcb-shm0
410s   libxft2 libxnvctrl0 libxrender1 libxss1 libxt6t64 mpi-default-bin
410s   ocl-icd-libopencl1 openmpi-bin openmpi-common r-base-core ray ray-doc
410s   ray-extra unzip x11-common xdg-utils zip
410s Suggested packages:
410s   tcl8.6 tk8.6 opencl-icd gfortran | fortran-compiler elpa-ess r-doc-info
410s   | r-doc-pdf r-mathlib r-base-html
410s Recommended packages:
410s   r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl libnet-dbus-perl
410s   libx11-protocol-perl x11-utils x11-xserver-utils
410s The following NEW packages will be installed:
410s   autopkgtest-satdep fontconfig libamd-comgr2 libamdhip64-5 libblas3 libcairo2
410s   libdatrie1 libdrm-amdgpu1 libevent-pthreads-2.1-7 libfabric1 libgfortran5
410s   libgomp1 libgraphite2-3 libharfbuzz0b libhsa-runtime64-1 libhsakmt1
410s   libhwloc-plugins libhwloc15 libice6 liblapack3 libllvm17t64 libmunge2
410s   libopenmpi3t64 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
410s   libpaper-utils libpaper1 libpciaccess0 libpixman-1-0 libpmix2t64
410s   librdmacm1t64 libsm6 libtcl8.6 libthai-data libthai0 libtk8.6 libucx0
410s   libxcb-render0 libxcb-shm0 libxft2 libxnvctrl0 libxrender1 libxss1 libxt6t64
410s   mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common r-base-core
410s   ray ray-doc ray-extra unzip x11-common xdg-utils zip
410s 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded.
410s Need to get 91.7 MB/91.7 MB of archives.
410s After this operation, 334 MB of additional disk space will be used.
410s Get:1 /tmp/autopkgtest.jScNWI/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [712 B]
410s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu1 [192 kB]
410s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libllvm17t64 ppc64el 1:17.0.6-9build2 [27.3 MB]
415s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libamd-comgr2 ppc64el 6.0+git20231212.4510c28+dfsg-3build1 [15.3 MB]
418s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-amdgpu1 ppc64el 2.4.120-2 [24.5 kB]
418s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhsakmt1 ppc64el 5.7.0-1 [76.5 kB]
418s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhsa-runtime64-1 ppc64el 5.7.1-2 [330 kB]
418s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libamdhip64-5 ppc64el 5.2.3-13 [5008 kB]
418s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB]
418s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB]
418s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB]
418s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B]
418s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB]
418s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcairo2 ppc64el 1.18.0-1ubuntu1 [751 kB]
419s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3 [25.1 kB]
419s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libevent-pthreads-2.1-7 ppc64el 2.1.12-stable-9build1 [7906 B]
419s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el librdmacm1t64 ppc64el 50.0-2build1 [80.9 kB]
419s Get:18 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfabric1 ppc64el 1.17.0-3build1 [694 kB]
419s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgfortran5 ppc64el 14-20240315-1ubuntu1 [574 kB]
419s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgomp1 ppc64el 14-20240315-1ubuntu1 [161 kB]
419s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB]
419s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build1 [580 kB]
419s Get:23 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhwloc15 ppc64el 2.10.0-1 [216 kB]
419s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB]
419s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build2 [49.3 kB]
419s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB]
419s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmunge2 ppc64el 0.5.15-4 [17.6 kB]
419s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libpciaccess0 ppc64el 0.17-3 [20.8 kB]
419s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxnvctrl0 ppc64el 510.47.03-0ubuntu3 [12.6 kB]
419s Get:30 http://ftpmaster.internal/ubuntu noble/universe ppc64el ocl-icd-libopencl1 ppc64el 2.3.2-1 [41.7 kB]
419s Get:31 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhwloc-plugins ppc64el 2.10.0-1 [17.3 kB]
419s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libpmix2t64 ppc64el 5.0.1-4.1 [765 kB]
420s Get:33 http://ftpmaster.internal/ubuntu noble/universe ppc64el libucx0 ppc64el 1.16.0+ds-4 [1203 kB]
420s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libopenmpi3t64 ppc64el 4.1.6-7ubuntu1 [2721 kB]
420s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2 [158 kB]
420s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2 [21.4 kB]
420s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpango-1.0-0 ppc64el 1.52.1+ds-1 [271 kB]
420s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpangoft2-1.0-0 ppc64el 1.52.1+ds-1 [50.5 kB]
420s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpangocairo-1.0-0 ppc64el 1.52.1+ds-1 [31.1 kB]
420s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29 [13.5 kB]
420s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29 [8710 B]
420s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build2 [18.5 kB]
420s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1 [1204 kB]
420s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB]
420s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B]
420s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.14-1 [944 kB]
421s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2 [204 kB]
421s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el openmpi-common all 4.1.6-7ubuntu1 [170 kB]
421s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el openmpi-bin ppc64el 4.1.6-7ubuntu1 [118 kB]
421s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13 [192 kB]
421s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu3 [192 kB]
421s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
421s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el r-base-core ppc64el 4.3.3-2build1 [27.4 MB]
424s Get:54 http://ftpmaster.internal/ubuntu noble/universe ppc64el mpi-default-bin ppc64el 1.15 [2336 B]
424s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el ray ppc64el 2.3.1-8build1 [824 kB]
424s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el ray-doc all 2.3.1-8build1 [35.2 kB]
424s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el ray-extra all 2.3.1-8build1 [12.3 kB]
425s Preconfiguring packages ...
425s Fetched 91.7 MB in 15s (6224 kB/s)
425s Selecting previously unselected package fontconfig.
425s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 111945 files and directories currently installed.)
425s Preparing to unpack .../00-fontconfig_2.15.0-1.1ubuntu1_ppc64el.deb ...
425s Unpacking fontconfig (2.15.0-1.1ubuntu1) ...
425s Selecting previously unselected package libllvm17t64:ppc64el.
425s Preparing to unpack .../01-libllvm17t64_1%3a17.0.6-9build2_ppc64el.deb ...
425s Unpacking libllvm17t64:ppc64el (1:17.0.6-9build2) ...
426s Selecting previously unselected package libamd-comgr2:ppc64el.
426s Preparing to unpack .../02-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build1_ppc64el.deb ...
426s Unpacking libamd-comgr2:ppc64el (6.0+git20231212.4510c28+dfsg-3build1) ...
426s Selecting previously unselected package libdrm-amdgpu1:ppc64el.
426s Preparing to unpack .../03-libdrm-amdgpu1_2.4.120-2_ppc64el.deb ...
426s Unpacking libdrm-amdgpu1:ppc64el (2.4.120-2) ...
426s Selecting previously unselected package libhsakmt1:ppc64el.
426s Preparing to unpack .../04-libhsakmt1_5.7.0-1_ppc64el.deb ...
426s Unpacking libhsakmt1:ppc64el (5.7.0-1) ...
426s Selecting previously unselected package libhsa-runtime64-1.
426s Preparing to unpack .../05-libhsa-runtime64-1_5.7.1-2_ppc64el.deb ...
426s Unpacking libhsa-runtime64-1 (5.7.1-2) ...
426s Selecting previously unselected package libamdhip64-5.
426s Preparing to unpack .../06-libamdhip64-5_5.2.3-13_ppc64el.deb ...
426s Unpacking libamdhip64-5 (5.2.3-13) ...
426s Selecting previously unselected package libblas3:ppc64el.
426s Preparing to unpack .../07-libblas3_3.12.0-3_ppc64el.deb ...
426s Unpacking libblas3:ppc64el (3.12.0-3) ...
426s Selecting previously unselected package libpixman-1-0:ppc64el.
426s Preparing to unpack .../08-libpixman-1-0_0.42.2-1_ppc64el.deb ...
426s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ...
426s Selecting previously unselected package libxcb-render0:ppc64el.
426s Preparing to unpack .../09-libxcb-render0_1.15-1_ppc64el.deb ...
426s Unpacking libxcb-render0:ppc64el (1.15-1) ...
426s Selecting previously unselected package libxcb-shm0:ppc64el.
426s Preparing to unpack .../10-libxcb-shm0_1.15-1_ppc64el.deb ...
426s Unpacking libxcb-shm0:ppc64el (1.15-1) ...
426s Selecting previously unselected package libxrender1:ppc64el.
426s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ...
426s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ...
426s Selecting previously unselected package libcairo2:ppc64el.
426s Preparing to unpack .../12-libcairo2_1.18.0-1ubuntu1_ppc64el.deb ...
426s Unpacking libcairo2:ppc64el (1.18.0-1ubuntu1) ...
426s Selecting previously unselected package libdatrie1:ppc64el.
426s Preparing to unpack .../13-libdatrie1_0.2.13-3_ppc64el.deb ...
426s Unpacking libdatrie1:ppc64el (0.2.13-3) ...
426s Selecting previously unselected package libevent-pthreads-2.1-7:ppc64el.
426s Preparing to unpack .../14-libevent-pthreads-2.1-7_2.1.12-stable-9build1_ppc64el.deb ...
426s Unpacking libevent-pthreads-2.1-7:ppc64el (2.1.12-stable-9build1) ...
426s Selecting previously unselected package librdmacm1t64:ppc64el.
426s Preparing to unpack .../15-librdmacm1t64_50.0-2build1_ppc64el.deb ...
426s Unpacking librdmacm1t64:ppc64el (50.0-2build1) ...
427s Selecting previously unselected package libfabric1:ppc64el.
427s Preparing to unpack .../16-libfabric1_1.17.0-3build1_ppc64el.deb ...
427s Unpacking libfabric1:ppc64el (1.17.0-3build1) ...
427s Selecting previously unselected package libgfortran5:ppc64el.
427s Preparing to unpack .../17-libgfortran5_14-20240315-1ubuntu1_ppc64el.deb ...
427s Unpacking libgfortran5:ppc64el (14-20240315-1ubuntu1) ...
427s Selecting previously unselected package libgomp1:ppc64el.
427s Preparing to unpack .../18-libgomp1_14-20240315-1ubuntu1_ppc64el.deb ...
427s Unpacking libgomp1:ppc64el (14-20240315-1ubuntu1) ...
427s Selecting previously unselected package libgraphite2-3:ppc64el.
427s Preparing to unpack .../19-libgraphite2-3_1.3.14-2_ppc64el.deb ...
427s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ...
427s Selecting previously unselected package libharfbuzz0b:ppc64el.
427s Preparing to unpack .../20-libharfbuzz0b_8.3.0-2build1_ppc64el.deb ...
427s Unpacking libharfbuzz0b:ppc64el (8.3.0-2build1) ...
427s Selecting previously unselected package libhwloc15:ppc64el.
427s Preparing to unpack .../21-libhwloc15_2.10.0-1_ppc64el.deb ...
427s Unpacking libhwloc15:ppc64el (2.10.0-1) ...
427s Selecting previously unselected package x11-common.
427s Preparing to unpack .../22-x11-common_1%3a7.7+23ubuntu2_all.deb ...
427s Unpacking x11-common (1:7.7+23ubuntu2) ...
427s Selecting previously unselected package libice6:ppc64el.
427s Preparing to unpack .../23-libice6_2%3a1.0.10-1build2_ppc64el.deb ...
427s Unpacking libice6:ppc64el (2:1.0.10-1build2) ...
427s Selecting previously unselected package liblapack3:ppc64el.
427s Preparing to unpack .../24-liblapack3_3.12.0-3_ppc64el.deb ...
427s Unpacking liblapack3:ppc64el (3.12.0-3) ...
427s Selecting previously unselected package libmunge2:ppc64el.
427s Preparing to unpack .../25-libmunge2_0.5.15-4_ppc64el.deb ...
427s Unpacking libmunge2:ppc64el (0.5.15-4) ...
427s Selecting previously unselected package libpciaccess0:ppc64el.
427s Preparing to unpack .../26-libpciaccess0_0.17-3_ppc64el.deb ...
427s Unpacking libpciaccess0:ppc64el (0.17-3) ...
427s Selecting previously unselected package libxnvctrl0:ppc64el.
427s Preparing to unpack .../27-libxnvctrl0_510.47.03-0ubuntu3_ppc64el.deb ...
427s Unpacking libxnvctrl0:ppc64el (510.47.03-0ubuntu3) ...
427s Selecting previously unselected package ocl-icd-libopencl1:ppc64el.
427s Preparing to unpack .../28-ocl-icd-libopencl1_2.3.2-1_ppc64el.deb ...
427s Unpacking ocl-icd-libopencl1:ppc64el (2.3.2-1) ...
427s Selecting previously unselected package libhwloc-plugins:ppc64el.
427s Preparing to unpack .../29-libhwloc-plugins_2.10.0-1_ppc64el.deb ...
427s Unpacking libhwloc-plugins:ppc64el (2.10.0-1) ...
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427s Preparing to unpack .../30-libpmix2t64_5.0.1-4.1_ppc64el.deb ...
427s Unpacking libpmix2t64:ppc64el (5.0.1-4.1) ...
427s Selecting previously unselected package libucx0:ppc64el.
427s Preparing to unpack .../31-libucx0_1.16.0+ds-4_ppc64el.deb ...
427s Unpacking libucx0:ppc64el (1.16.0+ds-4) ...
427s Selecting previously unselected package libopenmpi3t64:ppc64el.
427s Preparing to unpack .../32-libopenmpi3t64_4.1.6-7ubuntu1_ppc64el.deb ...
427s Unpacking libopenmpi3t64:ppc64el (4.1.6-7ubuntu1) ...
427s Selecting previously unselected package libthai-data.
427s Preparing to unpack .../33-libthai-data_0.1.29-2_all.deb ...
427s Unpacking libthai-data (0.1.29-2) ...
427s Selecting previously unselected package libthai0:ppc64el.
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427s Unpacking libthai0:ppc64el (0.1.29-2) ...
427s Selecting previously unselected package libpango-1.0-0:ppc64el.
427s Preparing to unpack .../35-libpango-1.0-0_1.52.1+ds-1_ppc64el.deb ...
427s Unpacking libpango-1.0-0:ppc64el (1.52.1+ds-1) ...
427s Selecting previously unselected package libpangoft2-1.0-0:ppc64el.
427s Preparing to unpack .../36-libpangoft2-1.0-0_1.52.1+ds-1_ppc64el.deb ...
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427s Selecting previously unselected package libpangocairo-1.0-0:ppc64el.
427s Preparing to unpack .../37-libpangocairo-1.0-0_1.52.1+ds-1_ppc64el.deb ...
427s Unpacking libpangocairo-1.0-0:ppc64el (1.52.1+ds-1) ...
427s Selecting previously unselected package libpaper1:ppc64el.
427s Preparing to unpack .../38-libpaper1_1.1.29_ppc64el.deb ...
427s Unpacking libpaper1:ppc64el (1.1.29) ...
427s Selecting previously unselected package libpaper-utils.
427s Preparing to unpack .../39-libpaper-utils_1.1.29_ppc64el.deb ...
427s Unpacking libpaper-utils (1.1.29) ...
427s Selecting previously unselected package libsm6:ppc64el.
427s Preparing to unpack .../40-libsm6_2%3a1.2.3-1build2_ppc64el.deb ...
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427s Preparing to unpack .../41-libtcl8.6_8.6.14+dfsg-1_ppc64el.deb ...
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427s Selecting previously unselected package libxft2:ppc64el.
427s Preparing to unpack .../42-libxft2_2.3.6-1_ppc64el.deb ...
427s Unpacking libxft2:ppc64el (2.3.6-1) ...
427s Selecting previously unselected package libxss1:ppc64el.
427s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build2_ppc64el.deb ...
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427s Selecting previously unselected package libtk8.6:ppc64el.
427s Preparing to unpack .../44-libtk8.6_8.6.14-1_ppc64el.deb ...
427s Unpacking libtk8.6:ppc64el (8.6.14-1) ...
427s Selecting previously unselected package libxt6t64:ppc64el.
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427s Selecting previously unselected package openmpi-common.
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427s Unpacking openmpi-common (4.1.6-7ubuntu1) ...
427s Selecting previously unselected package openmpi-bin.
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427s Unpacking openmpi-bin (4.1.6-7ubuntu1) ...
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427s Unpacking unzip (6.0-28ubuntu3) ...
427s Selecting previously unselected package xdg-utils.
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427s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
427s Selecting previously unselected package r-base-core.
427s Preparing to unpack .../51-r-base-core_4.3.3-2build1_ppc64el.deb ...
427s Unpacking r-base-core (4.3.3-2build1) ...
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428s Unpacking mpi-default-bin (1.15) ...
428s Selecting previously unselected package ray.
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428s Unpacking ray (2.3.1-8build1) ...
428s Selecting previously unselected package ray-doc.
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428s Unpacking ray-doc (2.3.1-8build1) ...
428s Selecting previously unselected package ray-extra.
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428s Unpacking ray-extra (2.3.1-8build1) ...
428s Selecting previously unselected package autopkgtest-satdep.
428s Preparing to unpack .../56-1-autopkgtest-satdep.deb ...
428s Unpacking autopkgtest-satdep (0) ...
428s Setting up libgraphite2-3:ppc64el (1.3.14-2) ...
428s Setting up libpixman-1-0:ppc64el (0.42.2-1) ...
428s Setting up libpaper1:ppc64el (1.1.29) ...
428s 
428s Creating config file /etc/papersize with new version
428s Setting up ray-doc (2.3.1-8build1) ...
428s Setting up libpciaccess0:ppc64el (0.17-3) ...
428s Setting up fontconfig (2.15.0-1.1ubuntu1) ...
430s Regenerating fonts cache... done.
430s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ...
430s Setting up libdatrie1:ppc64el (0.2.13-3) ...
430s Setting up libxcb-render0:ppc64el (1.15-1) ...
430s Setting up unzip (6.0-28ubuntu3) ...
430s Setting up x11-common (1:7.7+23ubuntu2) ...
431s Setting up libxcb-shm0:ppc64el (1.15-1) ...
431s Setting up libpaper-utils (1.1.29) ...
431s Setting up libgomp1:ppc64el (14-20240315-1ubuntu1) ...
431s Setting up libcairo2:ppc64el (1.18.0-1ubuntu1) ...
431s Setting up libxnvctrl0:ppc64el (510.47.03-0ubuntu3) ...
431s Setting up zip (3.0-13) ...
431s Setting up libblas3:ppc64el (3.12.0-3) ...
431s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
431s Setting up libmunge2:ppc64el (0.5.15-4) ...
431s Setting up libllvm17t64:ppc64el (1:17.0.6-9build2) ...
431s Setting up libhwloc15:ppc64el (2.10.0-1) ...
431s Setting up libtcl8.6:ppc64el (8.6.14+dfsg-1) ...
431s Setting up libgfortran5:ppc64el (14-20240315-1ubuntu1) ...
431s Setting up ocl-icd-libopencl1:ppc64el (2.3.2-1) ...
431s Setting up openmpi-common (4.1.6-7ubuntu1) ...
431s Setting up librdmacm1t64:ppc64el (50.0-2build1) ...
431s Setting up libharfbuzz0b:ppc64el (8.3.0-2build1) ...
431s Setting up libthai-data (0.1.29-2) ...
431s Setting up libamd-comgr2:ppc64el (6.0+git20231212.4510c28+dfsg-3build1) ...
431s Setting up libxss1:ppc64el (1:1.2.3-1build2) ...
431s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
431s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
431s Setting up libevent-pthreads-2.1-7:ppc64el (2.1.12-stable-9build1) ...
431s Setting up libdrm-amdgpu1:ppc64el (2.4.120-2) ...
431s Setting up libfabric1:ppc64el (1.17.0-3build1) ...
431s Setting up libice6:ppc64el (2:1.0.10-1build2) ...
431s Setting up liblapack3:ppc64el (3.12.0-3) ...
431s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
431s Setting up libxft2:ppc64el (2.3.6-1) ...
431s Setting up libtk8.6:ppc64el (8.6.14-1) ...
431s Setting up libhwloc-plugins:ppc64el (2.10.0-1) ...
431s Setting up libthai0:ppc64el (0.1.29-2) ...
431s Setting up libpmix2t64:ppc64el (5.0.1-4.1) ...
431s Setting up libsm6:ppc64el (2:1.2.3-1build2) ...
431s Setting up libhsakmt1:ppc64el (5.7.0-1) ...
431s Setting up libpango-1.0-0:ppc64el (1.52.1+ds-1) ...
431s Setting up libxt6t64:ppc64el (1:1.2.1-1.2) ...
431s Setting up libhsa-runtime64-1 (5.7.1-2) ...
431s Setting up libpangoft2-1.0-0:ppc64el (1.52.1+ds-1) ...
431s Setting up libpangocairo-1.0-0:ppc64el (1.52.1+ds-1) ...
431s Setting up libamdhip64-5 (5.2.3-13) ...
431s Setting up r-base-core (4.3.3-2build1) ...
431s 
431s Creating config file /etc/R/Renviron with new version
431s Setting up libucx0:ppc64el (1.16.0+ds-4) ...
431s Setting up ray-extra (2.3.1-8build1) ...
431s Setting up libopenmpi3t64:ppc64el (4.1.6-7ubuntu1) ...
431s Setting up openmpi-bin (4.1.6-7ubuntu1) ...
431s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
431s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
431s Setting up mpi-default-bin (1.15) ...
431s Setting up ray (2.3.1-8build1) ...
431s Setting up autopkgtest-satdep (0) ...
431s Processing triggers for man-db (2.12.0-3build4) ...
432s Processing triggers for install-info (7.1-3build1) ...
432s Processing triggers for libc-bin (2.39-0ubuntu6) ...
436s (Reading database ... 114419 files and directories currently installed.)
436s Removing autopkgtest-satdep (0) ...
436s autopkgtest [06:34:02]: test run-unit-test: [-----------------------
437s 
437s **************************************************
437s This program comes with ABSOLUTELY NO WARRANTY.
437s This is free software, and you are welcome to redistribute it
437s under certain conditions; see "LICENSE.txt" for details.
437s **************************************************
437s 
437s Ray Copyright (C) 2010, 2011, 2012, 2013 Sébastien Boisvert
437s Centre de recherche en infectiologie de l'Université Laval
437s Project funded by the Canadian Institutes of Health Research (Doctoral award 200902CGM-204212-172830 to S.B.)
437s http://denovoassembler.sf.net/
437s 
437s References to cite: 
437s 
437s Sébastien Boisvert, Frédéric Raymond, Élénie Godzaridis, François Laviolette and Jacques Corbeil.
437s Ray Meta: scalable de novo metagenome assembly and profiling.
437s Genome Biology (BioMed Central Ltd).
437s 13:R122, Published: 22 December 2012
437s http://dx.doi.org/doi:10.1186/gb-2012-13-12-r122
437s 
437s Sébastien Boisvert, François Laviolette & Jacques Corbeil.
437s Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.
437s Journal of Computational Biology (Mary Ann Liebert, Inc. publishers, New York, U.S.A.).
437s November 2010, Volume 17, Issue 11, Pages 1519-1533.
437s http://dx.doi.org/doi:10.1089/cmb.2009.0238
437s 
437s Ray version 2.3.1
437s License for Ray: GNU General Public License version 3
437s RayPlatform version: 2.0.1
437s License for RayPlatform: GNU Lesser General Public License version 3
437s 
437s MAXKMERLENGTH: 32
437s Maximum coverage depth stored by CoverageDepth: 4294967295
437s MAXIMUM_MESSAGE_SIZE_IN_BYTES: 4000 bytes
437s FORCE_PACKING = n
437s ASSERT = n
437s HAVE_LIBZ = y
437s HAVE_LIBBZ2 = y
437s PROFILER_COLLECT = n
437s MINIRANKS = y
437s CLOCK_GETTIME = n
437s __linux__ = y
437s _MSC_VER = n
437s __GNUC__ = y
437s RAY_32_BITS = n
437s RAY_64_BITS = y
437s MPI standard version: MPI 3.1
437s MPI library: Open-MPI 4.1.6
437s Compiler: GNU gcc/g++ 13.2.0
437s MPI I/O: n
437s 
437s 
437s -k (to set the k-mer size)
437s  Value: 31
437s 
437s 
437s Paired library # 0
437s  -p (paired-end sequences)
437s  Left sequences: ecoli_1K_1.fq
437s  Right sequences: ecoli_1K_2.fq
437s  Average length: automatic detection
437s  Standard deviation: automatic detection
437s 
437s Ray command: 
437s mpiexec -n 1 Ray \
437s  -k \
437s  31 \
437s  -p \
437s  ecoli_1K_1.fq \
437s  ecoli_1K_2.fq \
437s  -o \
437s  test1
437s 
437s Rank 0 wrote test1/RayCommand.txt
437s 
437s k-mer length: 31
437s Rank 0: assembler memory usage: 46272 KiB
437s Rank 0: assembler memory usage: 112064 KiB
437s Rank 0: Rank= 0 Size= 1 ProcessIdentifier= 2310
437s Rank 0: testing the network, please wait...
437s 
437s Rank 0 is testing the network [0/1000]
437s Rank 0 is testing the network [1000/1000]
437s Rank 0: mode round trip latency when requesting a reply for a message of 4000 bytes is 2 microseconds (10^-6 seconds)
437s Rank 0: average round trip latency when requesting a reply for a message of 4000 bytes is 2 microseconds (10^-6 seconds)
437s 
437s Rank 0 wrote test1/NetworkTest.txt
437s 
437s 
437s ***
437s Step: Network testing
437s Date: Wed Mar 27 06:34:03 2024
437s Elapsed time: 0 seconds
437s Since beginning: 0 seconds
437s ***
437s 
437s 
437s Rank 0 is fetching file ecoli_1K_1.fq with lazy loading (please wait...)
437s Rank 0: File ecoli_1K_1.fq (Number 0) has 2054 sequences
437s Rank 0 is fetching file ecoli_1K_2.fq with lazy loading (please wait...)
437s Rank 0: File ecoli_1K_2.fq (Number 1) has 2054 sequences
437s Rank 0 wrote test1/NumberOfSequences.txt
437s Rank 0 wrote test1/SequencePartition.txt
437s 
437s ***
437s Step: Counting sequences to assemble
437s Date: Wed Mar 27 06:34:03 2024
437s Elapsed time: 0 seconds
437s Since beginning: 0 seconds
437s ***
437s 
437s 
437s Rank 0 is loading sequence reads
437s Rank 0 : partition is [0;4107], 4108 sequence reads
437s Rank 0 is fetching file ecoli_1K_1.fq with lazy loading (please wait...)
437s Rank 0 has 0 sequence reads
437s Rank 0: assembler memory usage: 124992 KiB
437s Rank 0 is fetching file ecoli_1K_2.fq with lazy loading (please wait...)
437s Rank 0 has 4108 sequence reads (completed)
437s 
437s ***
437s Step: Sequence loading
437s Date: Wed Mar 27 06:34:03 2024
437s Elapsed time: 0 seconds
437s Since beginning: 0 seconds
437s ***
437s 
437s 
437s [BloomFilter] allocated 254696 bytes for table with 2037568 bits
437s Rank 0 created its Bloom filter
437s Rank 0 is counting k-mers in sequence reads [1/4108]
437s Rank 0 is counting k-mers in sequence reads [4108/4108] (completed)
437s Rank 0 : VirtualCommunicator (service provided by BufferedData): 230710 virtual messages generated 462 real messages (0.200251%)
437s 
437s 
437s ***
437s Step: K-mer counting
437s Date: Wed Mar 27 06:34:03 2024
437s Elapsed time: 0 seconds
437s Since beginning: 0 seconds
437s ***
437s 
437s 
437s Rank 0 number of set bits in the Bloom filter: [ 7801 / 2037568 ] (0.382858%)
437s Rank 0 destroyed its Bloom filter
437s Rank 0 has 1954 k-mers (completed)
437s [BloomFilter] Rank 0: k-mers sampled -> 1954, k-mers dropped -> 0 (0%), k-mers accepted -> 1954 (100%)
437s Rank 0: assembler memory usage: 121408 KiB
437s 
437s 
437s Rank 0: the minimum coverage is 3
437s Rank 0: the peak coverage is 3
437s Warning: no peak observed in the k-mer coverage distribution.
437s to deal with the sequencing error rate, try to lower the k-mer length (-k)
437s If you are using RNA-Seq or metagenomic data, then you can ignore this warning.
437s 
437s ***
437s Step: Coverage distribution analysis
437s Date: Wed Mar 27 06:34:03 2024
437s Elapsed time: 0 seconds
437s Since beginning: 0 seconds
437s ***
437s 
437s 
437s 
438s Rank 0 is adding edges [1/4108]
438s Rank 0 is adding edges [4108/4108] (completed)
438s Rank 0 : VirtualCommunicator (service provided by BufferedData): 453238 virtual messages generated 1813 real messages (0.400011%)
438s Rank 0 : VirtualCommunicator (service provided by BufferedData): 453238 virtual messages generated 1813 real messages (0.400011%)
438s 
438s ***
438s Step: Graph construction
438s Date: Wed Mar 27 06:34:04 2024
438s Elapsed time: 1 seconds
438s Since beginning: 1 seconds
438s ***
438s 
438s 
438s Rank 0 has 1954 vertices (completed)
438s Rank 0: assembler memory usage: 121408 KiB
438s Rank 0 is purging edges [1/1954]
438s Rank 0 is purging edges [1954/1954] (completed)
438s Rank 0: assembler memory usage: 121792 KiB
438s VirtualProcessor: completed jobs: 1954
438s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 3904 virtual messages generated 11 real messages (0.281762%)
439s Rank 0 wrote test1/degreeDistribution.txt
439s 
439s ***
439s Step: Null edge purging
439s Date: Wed Mar 27 06:34:05 2024
439s Elapsed time: 1 seconds
439s Since beginning: 2 seconds
439s ***
439s 
439s 
439s Rank 0 is selecting optimal read markers [1/4108]
439s Rank 0: assembler memory usage: 121792 KiB
439s Rank 0 is selecting optimal read markers [4108/4108] (completed)
439s Rank 0: peak number of workers: 599, maximum: 32768
439s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 238890 virtual messages generated 609 real messages (0.254929%)
439s Rank 0: assembler memory usage: 130112 KiB
439s Rank 0: Freeing unused assembler memory: 4096 KiB freed
439s Rank 0: assembler memory usage: 130112 KiB
439s 
439s ***
439s Step: Selection of optimal read markers
439s Date: Wed Mar 27 06:34:05 2024
439s Elapsed time: 0 seconds
439s Since beginning: 2 seconds
439s ***
439s 
439s 
439s Rank 0: memory usage for  optimal read markers= 4096 KiB
439s Rank 0 is creating seeds [1/1954]
439s Rank 0: assembler memory usage: 130112 KiB
440s Rank 0 has 1 seeds
440s Rank 0 is creating seeds [1954/1954] (completed)
440s Rank 0: peak number of workers: 746, maximum: 32768
440s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 13612 virtual messages generated 1720 real messages (12.6359%)
440s Rank 0 runtime statistics for seeding algorithm: 
440s Rank 0 Skipped paths because of dead end for head: 0
440s Rank 0 Skipped paths because of dead end for tail: 0
440s Rank 0 Skipped paths because of two dead ends: 0
440s Rank 0 Skipped paths because of bubble weak component: 0
440s Rank 0 Skipped paths because of short length: 1952
440s Rank 0 Skipped paths because of bad ownership: 1
440s Rank 0 Skipped paths because of low coverage: 0
440s Rank 0 Eligible paths: 1
440s Rank 0: assembler memory usage: 130112 KiB
440s Rank 0 has 1 seeds to register.
440s Rank 0 registered 0/1
440s Rank 0 registered 0/1
440s Rank 0 registered its seeds
440s VirtualProcessor: completed jobs: 0
440s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%)
440s Rank 0 freed 4194304 bytes from the path memory pool (chunks: 1)
450s Rank 0: gossiping generated 0 messages (gossips: 0 ---> 0)
450s Rank 0 merged its seeds: 1 seeds -> 1 seeds
450s 
450s ***
450s Step: Detection of assembly seeds
450s Date: Wed Mar 27 06:34:16 2024
450s Elapsed time: 11 seconds
450s Since beginning: 13 seconds
450s ***
450s 
450s 
450s Rank 0 is calculating library lengths [1/1]
450s Rank 0 detected 1737 library lengths
450s Rank 0 is calculating library lengths [1/1] (completed)
450s Rank 0: peak number of workers: 1, maximum: 32768
450s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 7997 virtual messages generated 7997 real messages (100%)
450s Rank 0: assembler memory usage: 167040 KiB
450s Rank 0 : VirtualCommunicator (service provided by BufferedData): 67 virtual messages generated 1 real messages (1.49254%)
450s 
450s Mode= 2 signalAverage= 9
450s CURRENT IS NOISE, 244
450s GOT HIT 212
450s 
450s 
450s Library # 0 (Automatic) -> average length: 214 and standard deviation: 10
450s 
450s ***
450s Step: Estimation of outer distances for paired reads
450s Date: Wed Mar 27 06:34:16 2024
450s Elapsed time: 0 seconds
450s Since beginning: 13 seconds
450s ***
450s 
450s 
450s Rank 0 starts on seed 0, length is 845, flow 0 [0/1]
450s Rank 0 traversed 1000 nucleotide symbols
450s Rank 0: assembler memory usage: 171136 KiB
450s Rank 0 is extending seeds [1/1] (completed)
450s Rank 0 extended 1 seeds out of 1 (100.00%)
450s Rank 0: assembler memory usage: 162944 KiB
450s Rank 0 starting fusions
450s 
450s ***
450s Step: Bidirectional extension of seeds
450s Date: Wed Mar 27 06:34:16 2024
450s Elapsed time: 0 seconds
450s Since beginning: 13 seconds
450s ***
450s 
450s 
450s Rank 0: starting clear step. cycleNumber= 0
451s Rank 0 adding 0 new fusions
451s Rank 0 cleared, 1 paths
451s Rank 0: starting distribution step
451s Rank 0 is distributing fusions [1/1]
451s Rank 0: assembler memory usage: 162944 KiB
451s Date: Wed Mar 27 06:34:17 2024
451s Rank 0 is distributing fusions [1/1] (completed)
451s Rank 0 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 6 real messages (0.618557%)
451s Rank 0: assembler memory usage: 167040 KiB
451s Date: Wed Mar 27 06:34:17 2024
451s Rank 0 tells others to compute fusions.
451s Rank 0 FusionTaskCreator assignNextTask [0/2]
451s Rank 0: assembler memory usage: 167040 KiB
451s Date: Wed Mar 27 06:34:17 2024
451s Rank 0 FusionTaskCreator processWorkerResult [0/2]
451s Rank 0: assembler memory usage: 167040 KiB
451s Date: Wed Mar 27 06:34:17 2024
451s Rank 0 FusionTaskCreator [2/2]
451s Statistics: all paths: 1 eliminated during fusing: 0
451s Rank 0: assembler memory usage: 167040 KiB
451s VirtualProcessor: completed jobs: 2
451s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 10907 virtual messages generated 10907 real messages (100%)
451s Rank 0: starting clear step. cycleNumber= 1
451s Rank 0 adding 0 new fusions
451s Rank 0 cleared, 1 paths
451s Rank 0 is distributing fusions [1/1]
451s Rank 0: assembler memory usage: 167040 KiB
451s Date: Wed Mar 27 06:34:17 2024
451s Rank 0 is distributing fusions [1/1] (completed)
451s Rank 0 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 6 real messages (0.618557%)
451s Rank 0: assembler memory usage: 167040 KiB
451s Date: Wed Mar 27 06:34:17 2024
451s Rank 0 JoinerTaskCreator assignNextTask [0/2]
451s Rank 0: assembler memory usage: 167040 KiB
451s Date: Wed Mar 27 06:34:17 2024
451s Rank 0 JoinerTaskCreator processWorkerResult [0/2]
451s Rank 0: assembler memory usage: 167040 KiB
451s Date: Wed Mar 27 06:34:17 2024
451s Rank 0 JoinerTaskCreator [2/2]
451s Statistics: all paths: 1 eliminated during joining: 0
451s Rank 0: assembler memory usage: 167040 KiB
451s Date: Wed Mar 27 06:34:17 2024
451s VirtualProcessor: completed jobs: 2
451s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 13817 virtual messages generated 13817 real messages (100%)
452s Rank 0 adding 0 new fusions
452s Rank 0 cleared, 1 paths
452s Rank 0: starting distribution step
452s Rank 0 is distributing fusions [1/1]
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s Rank 0 is distributing fusions [1/1] (completed)
452s Rank 0 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 6 real messages (0.618557%)
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s Rank 0 tells others to compute fusions.
452s Rank 0 FusionTaskCreator assignNextTask [0/2]
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s Rank 0 FusionTaskCreator processWorkerResult [0/2]
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s Rank 0 FusionTaskCreator [2/2]
452s Statistics: all paths: 1 eliminated during fusing: 0
452s Rank 0: assembler memory usage: 167040 KiB
452s VirtualProcessor: completed jobs: 2
452s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 16727 virtual messages generated 16727 real messages (100%)
452s Rank 0: starting clear step. cycleNumber= 2
452s Rank 0 adding 0 new fusions
452s Rank 0 cleared, 1 paths
452s Rank 0 is distributing fusions [1/1]
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s Rank 0 is distributing fusions [1/1] (completed)
452s Rank 0 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 6 real messages (0.618557%)
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s Rank 0 JoinerTaskCreator assignNextTask [0/2]
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s Rank 0 JoinerTaskCreator processWorkerResult [0/2]
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s Rank 0 JoinerTaskCreator [2/2]
452s Statistics: all paths: 1 eliminated during joining: 0
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s VirtualProcessor: completed jobs: 2
452s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 19637 virtual messages generated 19637 real messages (100%)
452s Rank 0 adding 0 new fusions
452s Rank 0 cleared, 1 paths
452s Rank 0: starting distribution step
452s Rank 0 is distributing fusions [1/1]
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s Rank 0 is distributing fusions [1/1] (completed)
452s Rank 0 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 6 real messages (0.618557%)
452s Rank 0: assembler memory usage: 167040 KiB
452s Date: Wed Mar 27 06:34:18 2024
452s Rank 0 cycleNumber= 2
452s 
452s ***
452s Step: Merging of redundant paths
452s Date: Wed Mar 27 06:34:18 2024
452s Elapsed time: 2 seconds
453s Since beginning: 15 seconds
453s ***
453s 
453s 
453s Rank 0 appended 1 elements
453s 
453s ***
453s Step: Generation of contigs
453s Date: Wed Mar 27 06:34:18 2024
453s Elapsed time: 0 seconds
453s Since beginning: 15 seconds
453s ***
453s 
453s Rank 0 objectName: 0 => peakCoverage: 237 blockSize: 970
453s Rank 0: gathering scaffold links [1/1] [970/970] (completed)
453s Rank 0 ineligibleObjects: 0/970 (0.00%)
453s Rank 0: assembler memory usage: 167040 KiB
453s contig: 0 vertices: 970 averageCoverage: 237 standardDeviation: 115 peakCoverage: 237 repeatCoverage: 474
453s Rank 0 finished gathering scaffold links.
453s Rank 0 will write 1 contig lengths
453s Rank 0 will solve the scaffolding problem.
453s Welcome to GreedySolver v1.0
453s 1 vertices; 0 edges
453s 1 contigs >= 500
453s Edges in solution: 0
453s 
453s Conflict statistics:
453s 1 scaffolds, 1 >= 500
453s Total: 1000 nucleotides
453s 
453s ***
453s Step: Scaffolding of contigs
453s Date: Wed Mar 27 06:34:19 2024
453s Elapsed time: 1 seconds
453s Since beginning: 16 seconds
453s ***
453s 
453s Rank 0 syncing with master
453s 
453s ***
453s Step: Counting sequences to search
453s Date: Wed Mar 27 06:34:19 2024
453s Elapsed time: 0 seconds
453s Since beginning: 16 seconds
453s ***
453s 
453s 
453s Rank 0 will add colors, 0 sequences in 0 files to process
453s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0.00%)
453s 
453s ***
453s Step: Graph coloring
453s Date: Wed Mar 27 06:34:19 2024
453s Elapsed time: 0 seconds
453s Since beginning: 16 seconds
453s ***
453s 
453s 
453s Rank 0: starting SlaveMode= call_RAY_SLAVE_MODE_CONTIG_BIOLOGICAL_ABUNDANCES
453s Rank 0 shares its counts
453s Rank 0 computing contig abundances [1/1] [1/970]
453s Rank 0 computing contig abundances [1/1] [970/970]
453s [IO] Input/output operations for coverage XML objects: 1 / bufferSize: 16777216 bytes
453s 
453s ***
453s Step: Counting contig biological abundances
453s Date: Wed Mar 27 06:34:19 2024
453s Elapsed time: 0 seconds
453s Since beginning: 16 seconds
453s ***
453s 
453s 
453s Rank 0 colored the graph with 0 real colors using 1 virtual colors
453s Rank 0 : VirtualCommunicator (service provided by BufferedData): 3880 virtual messages generated 8 real messages (0.21%)
453s 
453s ***
453s Step: Counting sequence biological abundances
453s Date: Wed Mar 27 06:34:19 2024
453s Elapsed time: 0 seconds
453s Since beginning: 16 seconds
453s ***
453s 
453s 
453s [IO] Input/output operations for sequence XML objects: 0 / bufferSize: 16777216 bytes
453s [IO] Input/output operations for identification TSV objects: 0 / bufferSize: 16777216 bytes
453s Rank 0 has exactly 0 k-mer physical colors for the phylogeny.
453s 
453s [TaxonomyViewer::copyTaxonsFromSecondaryTable] 0 -> 0
453s Rank 0 is starting taxon syncing across the compute tribe.
453s 
453s ***
453s Step: Loading taxons
453s Date: Wed Mar 27 06:34:19 2024
453s Elapsed time: 0 seconds
453s Since beginning: 16 seconds
453s ***
454s 
454s Rank 0 synced taxons across the grid with 1 poor slaves.
454s [TaxonomyViewer::copyTaxonsFromSecondaryTable] 0 -> 0
454s Rank 0 has 0 taxons after syncing with master
454s 
454s 
454s ***
454s Step: Loading tree
454s Date: Wed Mar 27 06:34:20 2024
454s Elapsed time: 1 seconds
454s Since beginning: 17 seconds
454s ***
454s 
454s Rank 0 has exactly 0 k-mer physical colors related to EMBL CDS objects.
454s 
454s Rank 0: counting ontology terms in the graph...
455s Rank 0: 0 have some biological signal
455s Number of dereferenced alternate handles: 0
455s Number of k-mer observations with gene ontology terms: 0
455s Rank 0: synced ontology term profiles with master
455s Rank 0: synchronization is complete!
455s Rank 0: ontology terms with biological signal: 0
455s Populated recursive values...
455s Gene ontology terms without depth information: 0
455s [GeneOntology] maximum depth for GeneOntologyDomain 
 is 0
455s [GeneOntology] maximum depth for GeneOntologyDomain [GeneOntology] maximum depth for GeneOntologyDomain  is 0
455s 
455s ***
455s Step: Processing gene ontologies
455s Date: Wed Mar 27 06:34:21 2024
455s Elapsed time: 1 seconds
455s Since beginning: 18 seconds
455s ***
455s 
455s Rank 0: the CorePlugin GenomeNeighbourhood is disabled...
455s [GenomeNeighbourhood] in final list: 0
455s 
455s ***
455s Step: Computing neighbourhoods
455s Date: Wed Mar 27 06:34:21 2024
455s Elapsed time: 0 seconds
455s Since beginning: 18 seconds
455s ***
455s 
455s Contigs >= 100 nt
455s  Number: 1
455s  Total length: 1000
455s  Average: 1000
455s  N50: 1000
455s  Median: 1000
455s  Largest: 1000
455s Contigs >= 500 nt
455s  Number: 1
455s  Total length: 1000
455s  Average: 1000
455s  N50: 1000
455s  Median: 1000
455s  Largest: 1000
455s Scaffolds >= 100 nt
455s  Number: 1
455s  Total length: 1000
455s  Average: 1000
455s  N50: 1000
455s  Median: 1000
455s  Largest: 1000
455s Scaffolds >= 500 nt
455s  Number: 1
455s  Total length: 1000
455s  Average: 1000
455s  N50: 1000
455s  Median: 1000
455s  Largest: 1000
455s 
455s Rank 0 wrote test1/Contigs.fasta
455s Rank 0 wrote test1/Scaffolds.fasta
455s Check for test1/*
455s 
455s 
455s 
455s **************************************************
455s This program comes with ABSOLUTELY NO WARRANTY.
455s This is free software, and you are welcome to redistribute it
455s under certain conditions; see "LICENSE.txt" for details.
455s **************************************************
455s 
455s Ray Copyright (C) 2010, 2011, 2012, 2013 Sébastien Boisvert
455s Centre de recherche en infectiologie de l'Université Laval
455s Project funded by the Canadian Institutes of Health Research (Doctoral award 200902CGM-204212-172830 to S.B.)
455s http://denovoassembler.sf.net/
455s 
455s References to cite: 
455s 
455s Sébastien Boisvert, Frédéric Raymond, Élénie Godzaridis, François Laviolette and Jacques Corbeil.
455s Ray Meta: scalable de novo metagenome assembly and profiling.
455s Genome Biology (BioMed Central Ltd).
455s 13:R122, Published: 22 December 2012
455s http://dx.doi.org/doi:10.1186/gb-2012-13-12-r122
455s 
455s Sébastien Boisvert, François Laviolette & Jacques Corbeil.
455s Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.
455s Journal of Computational Biology (Mary Ann Liebert, Inc. publishers, New York, U.S.A.).
455s November 2010, Volume 17, Issue 11, Pages 1519-1533.
455s http://dx.doi.org/doi:10.1089/cmb.2009.0238
455s 
455s Ray version 2.3.1
455s License for Ray: GNU General Public License version 3
455s RayPlatform version: 2.0.1
455s License for RayPlatform: GNU Lesser General Public License version 3
455s 
455s MAXKMERLENGTH: 32
455s Maximum coverage depth stored by CoverageDepth: 4294967295
455s MAXIMUM_MESSAGE_SIZE_IN_BYTES: 4000 bytes
455s FORCE_PACKING = n
455s ASSERT = n
455s HAVE_LIBZ = y
455s HAVE_LIBBZ2 = y
455s PROFILER_COLLECT = n
455s MINIRANKS = y
455s CLOCK_GETTIME = n
455s __linux__ = y
455s _MSC_VER = n
455s __GNUC__ = y
455s RAY_32_BITS = n
455s RAY_64_BITS = y
455s MPI standard version: MPI 3.1
455s MPI library: Open-MPI 4.1.6
455s Compiler: GNU gcc/g++ 13.2.0
455s MPI I/O: n
455s 
455s 
455s -k (to set the k-mer size)
455s  Value: 31
455s 
455s 
455s Paired library # 0
455s  -p (paired-end sequences)
455s  Left sequences: SampleDirectory/s_6.first1000_1.fastq
455s  Right sequences: SampleDirectory/s_6.first1000_2.fastq
455s  Average length: automatic detection
455s  Standard deviation: automatic detection
455s 
455s Ray command: 
455s mpiexec -n 1 Ray \
455s  -k \
455s  31 \
455s  -detect-sequence-files \
455s  SampleDirectory \
455s  -o \
455s  test2
455s 
455s Rank 0 wrote test2/RayCommand.txt
455s 
455s k-mer length: 31
455s Rank 0: assembler memory usage: 46272 KiB
455s Rank 0: assembler memory usage: 112064 KiB
455s Rank 0: Rank= 0 Size= 1 ProcessIdentifier= 2316
455s Rank 0: testing the network, please wait...
455s 
455s Rank 0 is testing the network [0/1000]
455s Rank 0 is testing the network [1000/1000]
455s Rank 0: mode round trip latency when requesting a reply for a message of 4000 bytes is 2 microseconds (10^-6 seconds)
455s Rank 0: average round trip latency when requesting a reply for a message of 4000 bytes is 2 microseconds (10^-6 seconds)
455s 
455s Rank 0 wrote test2/NetworkTest.txt
455s 
455s 
455s ***
455s Step: Network testing
455s Date: Wed Mar 27 06:34:21 2024
455s Elapsed time: 0 seconds
455s Since beginning: 0 seconds
455s ***
455s 
455s 
455s Rank 0 is fetching file SampleDirectory/s_6.first1000_1.fastq with lazy loading (please wait...)
455s Rank 0: File SampleDirectory/s_6.first1000_1.fastq (Number 0) has 2054 sequences
455s Rank 0 is fetching file SampleDirectory/s_6.first1000_2.fastq with lazy loading (please wait...)
455s Rank 0: File SampleDirectory/s_6.first1000_2.fastq (Number 1) has 2054 sequences
455s Rank 0 wrote test2/NumberOfSequences.txt
455s Rank 0 wrote test2/SequencePartition.txt
455s 
455s ***
455s Step: Counting sequences to assemble
455s Date: Wed Mar 27 06:34:21 2024
455s Elapsed time: 0 seconds
455s Since beginning: 0 seconds
455s ***
455s 
455s 
455s Rank 0 is loading sequence reads
455s Rank 0 : partition is [0;4107], 4108 sequence reads
455s Rank 0 is fetching file SampleDirectory/s_6.first1000_1.fastq with lazy loading (please wait...)
455s Rank 0 has 0 sequence reads
455s Rank 0: assembler memory usage: 124992 KiB
455s Rank 0 is fetching file SampleDirectory/s_6.first1000_2.fastq with lazy loading (please wait...)
455s Rank 0 has 4108 sequence reads (completed)
455s 
455s ***
455s Step: Sequence loading
455s Date: Wed Mar 27 06:34:21 2024
455s Elapsed time: 0 seconds
455s Since beginning: 0 seconds
455s ***
455s 
455s 
455s [BloomFilter] allocated 254696 bytes for table with 2037568 bits
455s Rank 0 created its Bloom filter
455s Rank 0 is counting k-mers in sequence reads [1/4108]
455s Rank 0 is counting k-mers in sequence reads [4108/4108] (completed)
455s Rank 0 : VirtualCommunicator (service provided by BufferedData): 230710 virtual messages generated 462 real messages (0.200251%)
455s 
455s 
455s ***
455s Step: K-mer counting
455s Date: Wed Mar 27 06:34:21 2024
455s Elapsed time: 0 seconds
455s Since beginning: 0 seconds
455s ***
455s 
455s 
455s Rank 0 number of set bits in the Bloom filter: [ 7801 / 2037568 ] (0.382858%)
455s Rank 0 destroyed its Bloom filter
455s Rank 0 has 1954 k-mers (completed)
455s [BloomFilter] Rank 0: k-mers sampled -> 1954, k-mers dropped -> 0 (0%), k-mers accepted -> 1954 (100%)
455s Rank 0: assembler memory usage: 121408 KiB
456s 
456s 
456s Rank 0: the minimum coverage is 3
456s Rank 0: the peak coverage is 3
456s Warning: no peak observed in the k-mer coverage distribution.
456s to deal with the sequencing error rate, try to lower the k-mer length (-k)
456s If you are using RNA-Seq or metagenomic data, then you can ignore this warning.
456s 
456s ***
456s Step: Coverage distribution analysis
456s Date: Wed Mar 27 06:34:22 2024
456s Elapsed time: 1 seconds
456s Since beginning: 1 seconds
456s ***
456s 
456s 
456s 
456s Rank 0 is adding edges [1/4108]
456s Rank 0 is adding edges [4108/4108] (completed)
456s Rank 0 : VirtualCommunicator (service provided by BufferedData): 453238 virtual messages generated 1813 real messages (0.400011%)
456s Rank 0 : VirtualCommunicator (service provided by BufferedData): 453238 virtual messages generated 1813 real messages (0.400011%)
456s 
456s ***
456s Step: Graph construction
456s Date: Wed Mar 27 06:34:22 2024
456s Elapsed time: 0 seconds
456s Since beginning: 1 seconds
456s ***
456s 
456s 
456s Rank 0 has 1954 vertices (completed)
456s Rank 0: assembler memory usage: 121408 KiB
456s Rank 0 is purging edges [1/1954]
456s Rank 0 is purging edges [1954/1954] (completed)
456s Rank 0: assembler memory usage: 121792 KiB
456s VirtualProcessor: completed jobs: 1954
456s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 3904 virtual messages generated 11 real messages (0.281762%)
457s Rank 0 wrote test2/degreeDistribution.txt
457s 
457s ***
457s Step: Null edge purging
457s Date: Wed Mar 27 06:34:23 2024
457s Elapsed time: 1 seconds
457s Since beginning: 2 seconds
457s ***
457s 
457s 
457s Rank 0 is selecting optimal read markers [1/4108]
457s Rank 0: assembler memory usage: 121792 KiB
457s Rank 0 is selecting optimal read markers [4108/4108] (completed)
458s Rank 0: peak number of workers: 599, maximum: 32768
458s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 238890 virtual messages generated 609 real messages (0.254929%)
458s Rank 0: assembler memory usage: 130048 KiB
458s Rank 0: Freeing unused assembler memory: 4096 KiB freed
458s Rank 0: assembler memory usage: 130048 KiB
458s 
458s ***
458s Step: Selection of optimal read markers
458s Date: Wed Mar 27 06:34:23 2024
458s Elapsed time: 0 seconds
458s Since beginning: 2 seconds
458s ***
458s 
458s 
458s Rank 0: memory usage for  optimal read markers= 4096 KiB
458s Rank 0 is creating seeds [1/1954]
458s Rank 0: assembler memory usage: 130048 KiB
458s Rank 0 has 1 seeds
458s Rank 0 is creating seeds [1954/1954] (completed)
458s Rank 0: peak number of workers: 746, maximum: 32768
458s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 13612 virtual messages generated 1720 real messages (12.6359%)
458s Rank 0 runtime statistics for seeding algorithm: 
458s Rank 0 Skipped paths because of dead end for head: 0
458s Rank 0 Skipped paths because of dead end for tail: 0
458s Rank 0 Skipped paths because of two dead ends: 0
458s Rank 0 Skipped paths because of bubble weak component: 0
458s Rank 0 Skipped paths because of short length: 1952
458s Rank 0 Skipped paths because of bad ownership: 1
458s Rank 0 Skipped paths because of low coverage: 0
458s Rank 0 Eligible paths: 1
458s Rank 0: assembler memory usage: 130048 KiB
458s Rank 0 has 1 seeds to register.
458s Rank 0 registered 0/1
458s Rank 0 registered 0/1
458s Rank 0 registered its seeds
458s VirtualProcessor: completed jobs: 0
458s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%)
458s Rank 0 freed 4194304 bytes from the path memory pool (chunks: 1)
468s Rank 0: gossiping generated 0 messages (gossips: 0 ---> 0)
468s Rank 0 merged its seeds: 1 seeds -> 1 seeds
468s 
468s ***
468s Step: Detection of assembly seeds
468s Date: Wed Mar 27 06:34:34 2024
468s Elapsed time: 11 seconds
468s Since beginning: 13 seconds
468s ***
468s 
468s 
468s Rank 0 is calculating library lengths [1/1]
468s Rank 0 detected 1737 library lengths
468s Rank 0 is calculating library lengths [1/1] (completed)
468s Rank 0: peak number of workers: 1, maximum: 32768
468s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 7997 virtual messages generated 7997 real messages (100%)
468s Rank 0: assembler memory usage: 166976 KiB
468s Rank 0 : VirtualCommunicator (service provided by BufferedData): 67 virtual messages generated 1 real messages (1.49254%)
468s 
468s Mode= 2 signalAverage= 9
468s CURRENT IS NOISE, 244
468s GOT HIT 212
468s 
468s 
468s Library # 0 (Automatic) -> average length: 214 and standard deviation: 10
468s 
468s ***
468s Step: Estimation of outer distances for paired reads
468s Date: Wed Mar 27 06:34:34 2024
468s Elapsed time: 0 seconds
468s Since beginning: 13 seconds
468s ***
468s 
468s 
468s Rank 0 starts on seed 0, length is 845, flow 0 [0/1]
468s Rank 0 traversed 1000 nucleotide symbols
468s Rank 0: assembler memory usage: 171072 KiB
468s Rank 0 is extending seeds [1/1] (completed)
468s Rank 0 extended 1 seeds out of 1 (100.00%)
468s Rank 0: assembler memory usage: 162880 KiB
468s Rank 0 starting fusions
468s 
468s ***
468s Step: Bidirectional extension of seeds
468s Date: Wed Mar 27 06:34:34 2024
468s Elapsed time: 0 seconds
468s Since beginning: 13 seconds
468s ***
468s 
468s 
468s Rank 0: starting clear step. cycleNumber= 0
469s Rank 0 adding 0 new fusions
469s Rank 0 cleared, 1 paths
469s Rank 0: starting distribution step
469s Rank 0 is distributing fusions [1/1]
469s Rank 0: assembler memory usage: 162880 KiB
469s Date: Wed Mar 27 06:34:35 2024
469s Rank 0 is distributing fusions [1/1] (completed)
469s Rank 0 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 6 real messages (0.618557%)
469s Rank 0: assembler memory usage: 166976 KiB
469s Date: Wed Mar 27 06:34:35 2024
469s Rank 0 tells others to compute fusions.
469s Rank 0 FusionTaskCreator assignNextTask [0/2]
469s Rank 0: assembler memory usage: 166976 KiB
469s Date: Wed Mar 27 06:34:35 2024
469s Rank 0 FusionTaskCreator processWorkerResult [0/2]
469s Rank 0: assembler memory usage: 166976 KiB
469s Date: Wed Mar 27 06:34:35 2024
469s Rank 0 FusionTaskCreator [2/2]
469s Statistics: all paths: 1 eliminated during fusing: 0
469s Rank 0: assembler memory usage: 166976 KiB
469s VirtualProcessor: completed jobs: 2
469s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 10907 virtual messages generated 10907 real messages (100%)
469s Rank 0: starting clear step. cycleNumber= 1
469s Rank 0 adding 0 new fusions
469s Rank 0 cleared, 1 paths
469s Rank 0 is distributing fusions [1/1]
469s Rank 0: assembler memory usage: 166976 KiB
469s Date: Wed Mar 27 06:34:35 2024
469s Rank 0 is distributing fusions [1/1] (completed)
469s Rank 0 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 6 real messages (0.618557%)
469s Rank 0: assembler memory usage: 166976 KiB
469s Date: Wed Mar 27 06:34:35 2024
469s Rank 0 JoinerTaskCreator assignNextTask [0/2]
469s Rank 0: assembler memory usage: 166976 KiB
469s Date: Wed Mar 27 06:34:35 2024
469s Rank 0 JoinerTaskCreator processWorkerResult [0/2]
469s Rank 0: assembler memory usage: 166976 KiB
469s Date: Wed Mar 27 06:34:35 2024
469s Rank 0 JoinerTaskCreator [2/2]
469s Statistics: all paths: 1 eliminated during joining: 0
469s Rank 0: assembler memory usage: 166976 KiB
469s Date: Wed Mar 27 06:34:35 2024
469s VirtualProcessor: completed jobs: 2
469s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 13817 virtual messages generated 13817 real messages (100%)
470s Rank 0 adding 0 new fusions
470s Rank 0 cleared, 1 paths
470s Rank 0: starting distribution step
470s Rank 0 is distributing fusions [1/1]
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:35 2024
470s Rank 0 is distributing fusions [1/1] (completed)
470s Rank 0 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 6 real messages (0.618557%)
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:35 2024
470s Rank 0 tells others to compute fusions.
470s Rank 0 FusionTaskCreator assignNextTask [0/2]
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:35 2024
470s Rank 0 FusionTaskCreator processWorkerResult [0/2]
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:35 2024
470s Rank 0 FusionTaskCreator [2/2]
470s Statistics: all paths: 1 eliminated during fusing: 0
470s Rank 0: assembler memory usage: 166976 KiB
470s VirtualProcessor: completed jobs: 2
470s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 16727 virtual messages generated 16727 real messages (100%)
470s Rank 0: starting clear step. cycleNumber= 2
470s Rank 0 adding 0 new fusions
470s Rank 0 cleared, 1 paths
470s Rank 0 is distributing fusions [1/1]
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:36 2024
470s Rank 0 is distributing fusions [1/1] (completed)
470s Rank 0 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 6 real messages (0.618557%)
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:36 2024
470s Rank 0 JoinerTaskCreator assignNextTask [0/2]
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:36 2024
470s Rank 0 JoinerTaskCreator processWorkerResult [0/2]
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:36 2024
470s Rank 0 JoinerTaskCreator [2/2]
470s Statistics: all paths: 1 eliminated during joining: 0
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:36 2024
470s VirtualProcessor: completed jobs: 2
470s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 19637 virtual messages generated 19637 real messages (100%)
470s Rank 0 adding 0 new fusions
470s Rank 0 cleared, 1 paths
470s Rank 0: starting distribution step
470s Rank 0 is distributing fusions [1/1]
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:36 2024
470s Rank 0 is distributing fusions [1/1] (completed)
470s Rank 0 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 6 real messages (0.618557%)
470s Rank 0: assembler memory usage: 166976 KiB
470s Date: Wed Mar 27 06:34:36 2024
470s Rank 0 cycleNumber= 2
470s 
470s ***
470s Step: Merging of redundant paths
470s Date: Wed Mar 27 06:34:36 2024
470s Elapsed time: 2 seconds
471s Since beginning: 15 seconds
471s ***
471s 
471s 
471s Rank 0 appended 1 elements
471s 
471s ***
471s Step: Generation of contigs
471s Date: Wed Mar 27 06:34:36 2024
471s Elapsed time: 0 seconds
471s Since beginning: 15 seconds
471s ***
471s 
471s Rank 0 objectName: 0 => peakCoverage: 237 blockSize: 970
471s Rank 0: gathering scaffold links [1/1] [970/970] (completed)
471s Rank 0 ineligibleObjects: 0/970 (0.00%)
471s Rank 0: assembler memory usage: 166976 KiB
471s contig: 0 vertices: 970 averageCoverage: 237 standardDeviation: 115 peakCoverage: 237 repeatCoverage: 474
471s Rank 0 finished gathering scaffold links.
471s Rank 0 will write 1 contig lengths
471s Rank 0 will solve the scaffolding problem.
471s Welcome to GreedySolver v1.0
471s 1 vertices; 0 edges
471s 1 contigs >= 500
471s Edges in solution: 0
471s 
471s Conflict statistics:
471s 1 scaffolds, 1 >= 500
471s Total: 1000 nucleotides
471s 
471s ***
471s Step: Scaffolding of contigs
471s Date: Wed Mar 27 06:34:37 2024
471s Elapsed time: 1 seconds
471s Since beginning: 16 seconds
471s ***
471s 
471s Rank 0 syncing with master
471s 
471s ***
471s Step: Counting sequences to search
471s Date: Wed Mar 27 06:34:37 2024
471s Elapsed time: 0 seconds
471s Since beginning: 16 seconds
471s ***
471s 
471s 
471s Rank 0 will add colors, 0 sequences in 0 files to process
471s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0.00%)
471s 
471s ***
471s Step: Graph coloring
471s Date: Wed Mar 27 06:34:37 2024
471s Elapsed time: 0 seconds
471s Since beginning: 16 seconds
471s ***
471s 
471s 
471s Rank 0: starting SlaveMode= call_RAY_SLAVE_MODE_CONTIG_BIOLOGICAL_ABUNDANCES
471s Rank 0 shares its counts
471s Rank 0 computing contig abundances [1/1] [1/970]
471s Rank 0 computing contig abundances [1/1] [970/970]
471s [IO] Input/output operations for coverage XML objects: 1 / bufferSize: 16777216 bytes
471s 
471s ***
471s Step: Counting contig biological abundances
471s Date: Wed Mar 27 06:34:37 2024
471s Elapsed time: 0 seconds
471s Since beginning: 16 seconds
471s ***
471s 
471s 
471s Rank 0 colored the graph with 0 real colors using 1 virtual colors
471s Rank 0 : VirtualCommunicator (service provided by BufferedData): 3880 virtual messages generated 8 real messages (0.21%)
471s 
471s ***
471s Step: Counting sequence biological abundances
471s Date: Wed Mar 27 06:34:37 2024
471s Elapsed time: 0 seconds
471s Since beginning: 16 seconds
471s ***
471s 
471s 
471s [IO] Input/output operations for sequence XML objects: 0 / bufferSize: 16777216 bytes
471s [IO] Input/output operations for identification TSV objects: 0 / bufferSize: 16777216 bytes
471s Rank 0 has exactly 0 k-mer physical colors for the phylogeny.
471s 
471s [TaxonomyViewer::copyTaxonsFromSecondaryTable] 0 -> 0
471s Rank 0 is starting taxon syncing across the compute tribe.
471s 
471s ***
471s Step: Loading taxons
471s Date: Wed Mar 27 06:34:37 2024
471s Elapsed time: 0 seconds
471s Since beginning: 16 seconds
471s ***
471s 
471s Rank 0 synced taxons across the grid with 1 poor slaves.
471s [TaxonomyViewer::copyTaxonsFromSecondaryTable] 0 -> 0
471s Rank 0 has 0 taxons after syncing with master
472s 
472s 
472s ***
472s Step: Loading tree
472s Date: Wed Mar 27 06:34:38 2024
472s Elapsed time: 1 seconds
472s Since beginning: 17 seconds
472s ***
472s 
472s Rank 0 has exactly 0 k-mer physical colors related to EMBL CDS objects.
472s 
472s Rank 0: counting ontology terms in the graph...
473s Rank 0: 0 have some biological signal
473s Number of dereferenced alternate handles: 0
473s Number of k-mer observations with gene ontology terms: 0
473s Rank 0: synced ontology term profiles with master
473s Rank 0: synchronization is complete!
473s Rank 0: ontology terms with biological signal: 0
473s Populated recursive values...
473s Gene ontology terms without depth information: 0
473s [GeneOntology] maximum depth for GeneOntologyDomain 
 is 0
473s [GeneOntology] maximum depth for GeneOntologyDomain [GeneOntology] maximum depth for GeneOntologyDomain  is 0
473s 
473s ***
473s Step: Processing gene ontologies
473s Date: Wed Mar 27 06:34:39 2024
473s Elapsed time: 1 seconds
473s Since beginning: 18 seconds
473s ***
473s 
473s Rank 0: the CorePlugin GenomeNeighbourhood is disabled...
473s [GenomeNeighbourhood] in final list: 0
473s 
473s ***
473s Step: Computing neighbourhoods
473s Date: Wed Mar 27 06:34:39 2024
473s Elapsed time: 0 seconds
473s Since beginning: 18 seconds
473s ***
473s 
473s Contigs >= 100 nt
473s  Number: 1
473s  Total length: 1000
473s  Average: 1000
473s  N50: 1000
473s  Median: 1000
473s  Largest: 1000
473s Contigs >= 500 nt
473s  Number: 1
473s  Total length: 1000
473s  Average: 1000
473s  N50: 1000
473s  Median: 1000
473s  Largest: 1000
473s Scaffolds >= 100 nt
473s  Number: 1
473s  Total length: 1000
473s  Average: 1000
473s  N50: 1000
473s  Median: 1000
473s  Largest: 1000
473s Scaffolds >= 500 nt
473s  Number: 1
473s  Total length: 1000
473s  Average: 1000
473s  N50: 1000
473s  Median: 1000
473s  Largest: 1000
473s 
473s Rank 0 wrote test2/Contigs.fasta
473s Rank 0 wrote test2/Scaffolds.fasta
473s Check for test2/*
473s 
473s 
473s 
473s **************************************************
473s This program comes with ABSOLUTELY NO WARRANTY.
473s This is free software, and you are welcome to redistribute it
473s under certain conditions; see "LICENSE.txt" for details.
473s **************************************************
473s 
473s Ray Copyright (C) 2010, 2011, 2012, 2013 Sébastien Boisvert
473s Centre de recherche en infectiologie de l'Université Laval
473s Project funded by the Canadian Institutes of Health Research (Doctoral award 200902CGM-204212-172830 to S.B.)
473s http://denovoassembler.sf.net/
473s 
473s References to cite: 
473s 
473s Sébastien Boisvert, Frédéric Raymond, Élénie Godzaridis, François Laviolette and Jacques Corbeil.
473s Ray Meta: scalable de novo metagenome assembly and profiling.
473s Genome Biology (BioMed Central Ltd).
473s 13:R122, Published: 22 December 2012
473s http://dx.doi.org/doi:10.1186/gb-2012-13-12-r122
473s 
473s Sébastien Boisvert, François Laviolette & Jacques Corbeil.
473s Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.
473s Journal of Computational Biology (Mary Ann Liebert, Inc. publishers, New York, U.S.A.).
473s November 2010, Volume 17, Issue 11, Pages 1519-1533.
473s http://dx.doi.org/doi:10.1089/cmb.2009.0238
473s 
473s Ray version 2.3.1
473s License for Ray: GNU General Public License version 3
473s RayPlatform version: 2.0.1
473s License for RayPlatform: GNU Lesser General Public License version 3
473s 
473s MAXKMERLENGTH: 32
473s Maximum coverage depth stored by CoverageDepth: 4294967295
473s MAXIMUM_MESSAGE_SIZE_IN_BYTES: 4000 bytes
473s FORCE_PACKING = n
473s ASSERT = n
473s HAVE_LIBZ = y
473s HAVE_LIBBZ2 = y
473s PROFILER_COLLECT = n
473s MINIRANKS = y
473s CLOCK_GETTIME = n
473s __linux__ = y
473s _MSC_VER = n
473s __GNUC__ = y
473s RAY_32_BITS = n
473s RAY_64_BITS = y
473s MPI standard version: MPI 3.1
473s MPI library: Open-MPI 4.1.6
473s Compiler: GNU gcc/g++ 13.2.0
473s MPI I/O: n
473s 
473s 
473s -k (to set the k-mer size)
473s  Value: 29
473s 
473s 
473s Paired library # 0
473s  -p (paired-end sequences)
473s  Left sequences: SampleDirectory/s_6.first1000_1.fastq
473s  Right sequences: SampleDirectory/s_6.first1000_2.fastq
473s  Average length: automatic detection
473s  Standard deviation: automatic detection
473s 
473s Ray command: 
473s mpiexec -n 1 Ray \
473s  -k \
473s  29 \
473s  -desable-recycling \
473s  -p \
473s  SampleDirectory/s_6.first1000_1.fastq \
473s  SampleDirectory/s_6.first1000_2.fastq
473s 
473s Rank 0 wrote RayOutput/RayCommand.txt
473s 
473s k-mer length: 29
473s Rank 0: assembler memory usage: 46272 KiB
473s Rank 0: assembler memory usage: 112064 KiB
473s Rank 0: Rank= 0 Size= 1 ProcessIdentifier= 2322
473s Rank 0: testing the network, please wait...
473s 
473s Rank 0 is testing the network [0/1000]
473s Rank 0 is testing the network [1000/1000]
473s Rank 0: mode round trip latency when requesting a reply for a message of 4000 bytes is 2 microseconds (10^-6 seconds)
473s Rank 0: average round trip latency when requesting a reply for a message of 4000 bytes is 1 microseconds (10^-6 seconds)
473s 
473s Rank 0 wrote RayOutput/NetworkTest.txt
473s 
473s 
473s ***
473s Step: Network testing
473s Date: Wed Mar 27 06:34:39 2024
473s Elapsed time: 0 seconds
473s Since beginning: 0 seconds
473s ***
473s 
473s 
473s Rank 0 is fetching file SampleDirectory/s_6.first1000_1.fastq with lazy loading (please wait...)
473s Rank 0: File SampleDirectory/s_6.first1000_1.fastq (Number 0) has 2054 sequences
473s Rank 0 is fetching file SampleDirectory/s_6.first1000_2.fastq with lazy loading (please wait...)
473s Rank 0: File SampleDirectory/s_6.first1000_2.fastq (Number 1) has 2054 sequences
473s Rank 0 wrote RayOutput/NumberOfSequences.txt
473s Rank 0 wrote RayOutput/SequencePartition.txt
473s 
473s ***
473s Step: Counting sequences to assemble
473s Date: Wed Mar 27 06:34:39 2024
473s Elapsed time: 0 seconds
473s Since beginning: 0 seconds
473s ***
473s 
473s 
473s Rank 0 is loading sequence reads
473s Rank 0 : partition is [0;4107], 4108 sequence reads
473s Rank 0 is fetching file SampleDirectory/s_6.first1000_1.fastq with lazy loading (please wait...)
473s Rank 0 has 0 sequence reads
473s Rank 0: assembler memory usage: 124992 KiB
473s Rank 0 is fetching file SampleDirectory/s_6.first1000_2.fastq with lazy loading (please wait...)
473s Rank 0 has 4108 sequence reads (completed)
473s 
473s ***
473s Step: Sequence loading
473s Date: Wed Mar 27 06:34:39 2024
473s Elapsed time: 0 seconds
473s Since beginning: 0 seconds
473s ***
473s 
473s 
473s [BloomFilter] allocated 238264 bytes for table with 1906112 bits
473s Rank 0 created its Bloom filter
473s Rank 0 is counting k-mers in sequence reads [1/4108]
473s Rank 0 is counting k-mers in sequence reads [4108/4108] (completed)
473s Rank 0 : VirtualCommunicator (service provided by BufferedData): 238926 virtual messages generated 478 real messages (0.200062%)
473s 
473s 
473s ***
473s Step: K-mer counting
473s Date: Wed Mar 27 06:34:39 2024
473s Elapsed time: 0 seconds
473s Since beginning: 0 seconds
473s ***
473s 
473s 
473s Rank 0 number of set bits in the Bloom filter: [ 7820 / 1906112 ] (0.410259%)
473s Rank 0 destroyed its Bloom filter
473s Rank 0 has 1958 k-mers (completed)
473s [BloomFilter] Rank 0: k-mers sampled -> 1958, k-mers dropped -> 0 (0%), k-mers accepted -> 1958 (100%)
473s Rank 0: assembler memory usage: 121408 KiB
473s 
473s 
473s Rank 0: the minimum coverage is 3
473s Rank 0: the peak coverage is 3
473s Warning: no peak observed in the k-mer coverage distribution.
473s to deal with the sequencing error rate, try to lower the k-mer length (-k)
473s If you are using RNA-Seq or metagenomic data, then you can ignore this warning.
473s 
473s ***
473s Step: Coverage distribution analysis
473s Date: Wed Mar 27 06:34:39 2024
473s Elapsed time: 0 seconds
473s Since beginning: 0 seconds
473s ***
473s 
473s 
473s 
474s Rank 0 is adding edges [1/4108]
474s Rank 0 is adding edges [4108/4108] (completed)
474s Rank 0 : VirtualCommunicator (service provided by BufferedData): 469636 virtual messages generated 1879 real messages (0.400097%)
474s Rank 0 : VirtualCommunicator (service provided by BufferedData): 469636 virtual messages generated 1879 real messages (0.400097%)
474s 
474s ***
474s Step: Graph construction
474s Date: Wed Mar 27 06:34:40 2024
474s Elapsed time: 1 seconds
474s Since beginning: 1 seconds
474s ***
474s 
474s 
474s Rank 0 has 1958 vertices (completed)
474s Rank 0: assembler memory usage: 121408 KiB
474s Rank 0 is purging edges [1/1958]
474s Rank 0 is purging edges [1958/1958] (completed)
474s Rank 0: assembler memory usage: 121792 KiB
474s VirtualProcessor: completed jobs: 1958
474s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 3912 virtual messages generated 12 real messages (0.306748%)
475s Rank 0 wrote RayOutput/degreeDistribution.txt
475s 
475s ***
475s Step: Null edge purging
475s Date: Wed Mar 27 06:34:41 2024
475s Elapsed time: 1 seconds
475s Since beginning: 2 seconds
475s ***
475s 
475s 
475s Rank 0 is selecting optimal read markers [1/4108]
475s Rank 0: assembler memory usage: 121792 KiB
475s Rank 0 is selecting optimal read markers [4108/4108] (completed)
475s Rank 0: peak number of workers: 599, maximum: 32768
475s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 247142 virtual messages generated 624 real messages (0.252486%)
475s Rank 0: assembler memory usage: 130112 KiB
475s Rank 0: Freeing unused assembler memory: 4096 KiB freed
475s Rank 0: assembler memory usage: 130112 KiB
475s 
475s ***
475s Step: Selection of optimal read markers
475s Date: Wed Mar 27 06:34:41 2024
475s Elapsed time: 0 seconds
475s Since beginning: 2 seconds
475s ***
475s 
475s 
475s Rank 0: memory usage for  optimal read markers= 4096 KiB
475s Rank 0 is creating seeds [1/1958]
475s Rank 0: assembler memory usage: 130112 KiB
476s Rank 0 has 1 seeds
476s Rank 0 is creating seeds [1958/1958] (completed)
476s Rank 0: peak number of workers: 746, maximum: 32768
476s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 13640 virtual messages generated 1708 real messages (12.522%)
476s Rank 0 runtime statistics for seeding algorithm: 
476s Rank 0 Skipped paths because of dead end for head: 0
476s Rank 0 Skipped paths because of dead end for tail: 0
476s Rank 0 Skipped paths because of two dead ends: 0
476s Rank 0 Skipped paths because of bubble weak component: 0
476s Rank 0 Skipped paths because of short length: 1956
476s Rank 0 Skipped paths because of bad ownership: 1
476s Rank 0 Skipped paths because of low coverage: 0
476s Rank 0 Eligible paths: 1
476s Rank 0: assembler memory usage: 130112 KiB
476s Rank 0 has 1 seeds to register.
476s Rank 0 registered 0/1
476s Rank 0 registered 0/1
476s Rank 0 registered its seeds
476s VirtualProcessor: completed jobs: 0
476s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%)
476s Rank 0 freed 4194304 bytes from the path memory pool (chunks: 1)
486s Rank 0: gossiping generated 0 messages (gossips: 0 ---> 0)
486s Rank 0 merged its seeds: 1 seeds -> 1 seeds
486s 
486s ***
486s Step: Detection of assembly seeds
486s Date: Wed Mar 27 06:34:52 2024
486s Elapsed time: 11 seconds
486s Since beginning: 13 seconds
486s ***
486s 
486s 
486s Rank 0 is calculating library lengths [1/1]
486s Rank 0 detected 1743 library lengths
486s Rank 0 is calculating library lengths [1/1] (completed)
486s Rank 0: peak number of workers: 1, maximum: 32768
486s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 8005 virtual messages generated 8005 real messages (100%)
486s Rank 0: assembler memory usage: 167040 KiB
486s Rank 0 : VirtualCommunicator (service provided by BufferedData): 67 virtual messages generated 1 real messages (1.49254%)
486s 
486s Mode= 2 signalAverage= 10
486s CURRENT IS NOISE, 244
486s GOT HIT 214
486s 
486s 
486s Library # 0 (Automatic) -> average length: 214 and standard deviation: 10
486s 
486s ***
486s Step: Estimation of outer distances for paired reads
486s Date: Wed Mar 27 06:34:52 2024
486s Elapsed time: 0 seconds
486s Since beginning: 13 seconds
486s ***
486s 
486s 
486s Rank 0 starts on seed 0, length is 845, flow 0 [0/1]
486s Rank 0 traversed 1000 nucleotide symbols
486s Rank 0: assembler memory usage: 171136 KiB
486s Rank 0 is extending seeds [1/1] (completed)
486s Rank 0 extended 1 seeds out of 1 (100.00%)
486s Rank 0: assembler memory usage: 162944 KiB
486s Rank 0 starting fusions
486s 
486s ***
486s Step: Bidirectional extension of seeds
486s Date: Wed Mar 27 06:34:52 2024
486s Elapsed time: 0 seconds
486s Since beginning: 13 seconds
486s ***
486s 
486s 
486s Rank 0: starting clear step. cycleNumber= 0
487s Rank 0 adding 0 new fusions
487s Rank 0 cleared, 1 paths
487s Rank 0: starting distribution step
487s Rank 0 is distributing fusions [1/1]
487s Rank 0: assembler memory usage: 162944 KiB
487s Date: Wed Mar 27 06:34:53 2024
487s Rank 0 is distributing fusions [1/1] (completed)
487s Rank 0 : VirtualCommunicator (service provided by BufferedData): 972 virtual messages generated 6 real messages (0.617284%)
487s Rank 0: assembler memory usage: 167040 KiB
487s Date: Wed Mar 27 06:34:53 2024
487s Rank 0 tells others to compute fusions.
487s Rank 0 FusionTaskCreator assignNextTask [0/2]
487s Rank 0: assembler memory usage: 167040 KiB
487s Date: Wed Mar 27 06:34:53 2024
487s Rank 0 FusionTaskCreator processWorkerResult [0/2]
487s Rank 0: assembler memory usage: 167040 KiB
487s Date: Wed Mar 27 06:34:53 2024
487s Rank 0 FusionTaskCreator [2/2]
487s Statistics: all paths: 1 eliminated during fusing: 0
487s Rank 0: assembler memory usage: 167040 KiB
487s VirtualProcessor: completed jobs: 2
487s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 10921 virtual messages generated 10921 real messages (100%)
487s Rank 0: starting clear step. cycleNumber= 1
487s Rank 0 adding 0 new fusions
487s Rank 0 cleared, 1 paths
487s Rank 0 is distributing fusions [1/1]
487s Rank 0: assembler memory usage: 167040 KiB
487s Date: Wed Mar 27 06:34:53 2024
487s Rank 0 is distributing fusions [1/1] (completed)
487s Rank 0 : VirtualCommunicator (service provided by BufferedData): 972 virtual messages generated 6 real messages (0.617284%)
487s Rank 0: assembler memory usage: 167040 KiB
487s Date: Wed Mar 27 06:34:53 2024
487s Rank 0 JoinerTaskCreator assignNextTask [0/2]
487s Rank 0: assembler memory usage: 167040 KiB
487s Date: Wed Mar 27 06:34:53 2024
487s Rank 0 JoinerTaskCreator processWorkerResult [0/2]
487s Rank 0: assembler memory usage: 167040 KiB
487s Date: Wed Mar 27 06:34:53 2024
487s Rank 0 JoinerTaskCreator [2/2]
487s Statistics: all paths: 1 eliminated during joining: 0
487s Rank 0: assembler memory usage: 167040 KiB
487s Date: Wed Mar 27 06:34:53 2024
487s VirtualProcessor: completed jobs: 2
487s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 13837 virtual messages generated 13837 real messages (100%)
488s Rank 0 adding 0 new fusions
488s Rank 0 cleared, 1 paths
488s Rank 0: starting distribution step
488s Rank 0 is distributing fusions [1/1]
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:53 2024
488s Rank 0 is distributing fusions [1/1] (completed)
488s Rank 0 : VirtualCommunicator (service provided by BufferedData): 972 virtual messages generated 6 real messages (0.617284%)
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:53 2024
488s Rank 0 tells others to compute fusions.
488s Rank 0 FusionTaskCreator assignNextTask [0/2]
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:53 2024
488s Rank 0 FusionTaskCreator processWorkerResult [0/2]
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:53 2024
488s Rank 0 FusionTaskCreator [2/2]
488s Statistics: all paths: 1 eliminated during fusing: 0
488s Rank 0: assembler memory usage: 167040 KiB
488s VirtualProcessor: completed jobs: 2
488s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 16753 virtual messages generated 16753 real messages (100%)
488s Rank 0: starting clear step. cycleNumber= 2
488s Rank 0 adding 0 new fusions
488s Rank 0 cleared, 1 paths
488s Rank 0 is distributing fusions [1/1]
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:54 2024
488s Rank 0 is distributing fusions [1/1] (completed)
488s Rank 0 : VirtualCommunicator (service provided by BufferedData): 972 virtual messages generated 6 real messages (0.617284%)
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:54 2024
488s Rank 0 JoinerTaskCreator assignNextTask [0/2]
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:54 2024
488s Rank 0 JoinerTaskCreator processWorkerResult [0/2]
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:54 2024
488s Rank 0 JoinerTaskCreator [2/2]
488s Statistics: all paths: 1 eliminated during joining: 0
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:54 2024
488s VirtualProcessor: completed jobs: 2
488s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 19669 virtual messages generated 19669 real messages (100%)
488s Rank 0 adding 0 new fusions
488s Rank 0 cleared, 1 paths
488s Rank 0: starting distribution step
488s Rank 0 is distributing fusions [1/1]
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:54 2024
488s Rank 0 is distributing fusions [1/1] (completed)
488s Rank 0 : VirtualCommunicator (service provided by BufferedData): 972 virtual messages generated 6 real messages (0.617284%)
488s Rank 0: assembler memory usage: 167040 KiB
488s Date: Wed Mar 27 06:34:54 2024
488s Rank 0 cycleNumber= 2
488s 
488s ***
488s Step: Merging of redundant paths
488s Date: Wed Mar 27 06:34:54 2024
488s Elapsed time: 2 seconds
488s Since beginning: 15 seconds
488s ***
488s 
488s 
488s Rank 0 appended 1 elements
488s 
488s ***
488s Step: Generation of contigs
488s Date: Wed Mar 27 06:34:54 2024
488s Elapsed time: 0 seconds
488s Since beginning: 15 seconds
488s ***
488s 
488s Rank 0 objectName: 0 => peakCoverage: 245 blockSize: 972
489s Rank 0: gathering scaffold links [1/1] [972/972] (completed)
489s Rank 0 ineligibleObjects: 0/972 (0.00%)
489s Rank 0: assembler memory usage: 167040 KiB
489s contig: 0 vertices: 972 averageCoverage: 245 standardDeviation: 117 peakCoverage: 245 repeatCoverage: 490
489s Rank 0 finished gathering scaffold links.
489s Rank 0 will write 1 contig lengths
489s Rank 0 will solve the scaffolding problem.
489s Welcome to GreedySolver v1.0
489s 1 vertices; 0 edges
489s 1 contigs >= 500
489s Edges in solution: 0
489s 
489s Conflict statistics:
489s 1 scaffolds, 1 >= 500
489s Total: 1000 nucleotides
489s 
489s ***
489s Step: Scaffolding of contigs
489s Date: Wed Mar 27 06:34:54 2024
489s Elapsed time: 0 seconds
489s Since beginning: 15 seconds
489s ***
489s 
489s Rank 0 syncing with master
489s 
489s ***
489s Step: Counting sequences to search
489s Date: Wed Mar 27 06:34:54 2024
489s Elapsed time: 0 seconds
489s Since beginning: 15 seconds
489s ***
489s 
489s 
489s Rank 0 will add colors, 0 sequences in 0 files to process
489s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0.00%)
489s 
489s ***
489s Step: Graph coloring
489s Date: Wed Mar 27 06:34:55 2024
489s Elapsed time: 1 seconds
489s Since beginning: 16 seconds
489s ***
489s 
489s 
489s Rank 0: starting SlaveMode= call_RAY_SLAVE_MODE_CONTIG_BIOLOGICAL_ABUNDANCES
489s Rank 0 shares its counts
489s Rank 0 computing contig abundances [1/1] [1/972]
489s Rank 0 computing contig abundances [1/1] [972/972]
489s [IO] Input/output operations for coverage XML objects: 1 / bufferSize: 16777216 bytes
489s 
489s ***
489s Step: Counting contig biological abundances
489s Date: Wed Mar 27 06:34:55 2024
489s Elapsed time: 0 seconds
489s Since beginning: 16 seconds
489s ***
489s 
489s 
489s Rank 0 colored the graph with 0 real colors using 1 virtual colors
489s Rank 0 : VirtualCommunicator (service provided by BufferedData): 3888 virtual messages generated 8 real messages (0.21%)
489s 
489s ***
489s Step: Counting sequence biological abundances
489s Date: Wed Mar 27 06:34:55 2024
489s Elapsed time: 0 seconds
489s Since beginning: 16 seconds
489s ***
489s 
489s 
489s [IO] Input/output operations for sequence XML objects: 0 / bufferSize: 16777216 bytes
489s [IO] Input/output operations for identification TSV objects: 0 / bufferSize: 16777216 bytes
489s Rank 0 has exactly 0 k-mer physical colors for the phylogeny.
489s 
489s [TaxonomyViewer::copyTaxonsFromSecondaryTable] 0 -> 0
489s Rank 0 is starting taxon syncing across the compute tribe.
489s 
489s ***
489s Step: Loading taxons
489s Date: Wed Mar 27 06:34:55 2024
489s Elapsed time: 0 seconds
489s Since beginning: 16 seconds
489s ***
489s 
489s Rank 0 synced taxons across the grid with 1 poor slaves.
489s [TaxonomyViewer::copyTaxonsFromSecondaryTable] 0 -> 0
489s Rank 0 has 0 taxons after syncing with master
490s 
490s 
490s ***
490s Step: Loading tree
490s Date: Wed Mar 27 06:34:56 2024
490s Elapsed time: 1 seconds
490s Since beginning: 17 seconds
490s ***
490s 
490s Rank 0 has exactly 0 k-mer physical colors related to EMBL CDS objects.
490s 
490s Rank 0: counting ontology terms in the graph...
491s Rank 0: 0 have some biological signal
491s Number of dereferenced alternate handles: 0
491s Number of k-mer observations with gene ontology terms: 0
491s Rank 0: synced ontology term profiles with master
491s Rank 0: synchronization is complete!
491s Rank 0: ontology terms with biological signal: 0
491s Populated recursive values...
491s Gene ontology terms without depth information: 0
491s [GeneOntology] maximum depth for GeneOntologyDomain 
 is 0
491s [GeneOntology] maximum depth for GeneOntologyDomain [GeneOntology] maximum depth for GeneOntologyDomain  is 0
491s 
491s ***
491s Step: Processing gene ontologies
491s Date: Wed Mar 27 06:34:57 2024
491s Elapsed time: 1 seconds
491s Since beginning: 18 seconds
491s ***
491s 
491s Rank 0: the CorePlugin GenomeNeighbourhood is disabled...
491s [GenomeNeighbourhood] in final list: 0
491s 
491s ***
491s Step: Computing neighbourhoods
491s Date: Wed Mar 27 06:34:57 2024
491s Elapsed time: 0 seconds
491s Since beginning: 18 seconds
491s ***
491s 
491s Contigs >= 100 nt
491s  Number: 1
491s  Total length: 1000
491s  Average: 1000
491s  N50: 1000
491s  Median: 1000
491s  Largest: 1000
491s Contigs >= 500 nt
491s  Number: 1
491s  Total length: 1000
491s  Average: 1000
491s  N50: 1000
491s  Median: 1000
491s  Largest: 1000
491s Scaffolds >= 100 nt
491s  Number: 1
491s  Total length: 1000
491s  Average: 1000
491s  N50: 1000
491s  Median: 1000
491s  Largest: 1000
491s Scaffolds >= 500 nt
491s  Number: 1
491s  Total length: 1000
491s  Average: 1000
491s  N50: 1000
491s  Median: 1000
491s  Largest: 1000
491s 
491s Rank 0 wrote RayOutput/Contigs.fasta
491s Rank 0 wrote RayOutput/Scaffolds.fasta
491s Check for RayOutput/*
491s 
491s 
491s 
491s Rank 1: assembler memory usage: 46336 KiB
491s **************************************************
491s This program comes with ABSOLUTELY NO WARRANTY.
491s This is free software, and you are welcome to redistribute it
491s under certain conditions; see "LICENSE.txt" for details.
491s **************************************************
491s 
491s Ray Copyright (C) 2010, 2011, 2012, 2013 Sébastien Boisvert
491s Centre de recherche en infectiologie de l'Université Laval
491s Project funded by the Canadian Institutes of Health Research (Doctoral award 200902CGM-204212-172830 to S.B.)
491s http://denovoassembler.sf.net/
491s 
491s References to cite: 
491s 
491s Sébastien Boisvert, Frédéric Raymond, Élénie Godzaridis, François Laviolette and Jacques Corbeil.
491s Ray Meta: scalable de novo metagenome assembly and profiling.
491s Genome Biology (BioMed Central Ltd).
491s 13:R122, Published: 22 December 2012
491s http://dx.doi.org/doi:10.1186/gb-2012-13-12-r122
491s 
491s Sébastien Boisvert, François Laviolette & Jacques Corbeil.
491s Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.
491s Journal of Computational Biology (Mary Ann Liebert, Inc. publishers, New York, U.S.A.).
491s November 2010, Volume 17, Issue 11, Pages 1519-1533.
491s http://dx.doi.org/doi:10.1089/cmb.2009.0238
491s 
491s Ray version 2.3.1
491s License for Ray: GNU General Public License version 3
491s RayPlatform version: 2.0.1
491s License for RayPlatform: GNU Lesser General Public License version 3
491s 
491s MAXKMERLENGTH: 32
491s Maximum coverage depth stored by CoverageDepth: 4294967295
491s MAXIMUM_MESSAGE_SIZE_IN_BYTES: 4000 bytes
491s FORCE_PACKING = n
491s ASSERT = n
491s HAVE_LIBZ = y
491s HAVE_LIBBZ2 = y
491s PROFILER_COLLECT = n
491s MINIRANKS = y
491s CLOCK_GETTIME = n
491s __linux__ = y
491s _MSC_VER = n
491s __GNUC__ = y
491s RAY_32_BITS = n
491s RAY_64_BITS = y
491s MPI standard version: MPI 3.1
491s MPI library: Open-MPI 4.1.6
491s Compiler: GNU gcc/g++ 13.2.0
491s MPI I/O: n
491s 
491s 
491s -k (to set the k-mer size)
491s  Value: 31
491s 
491s 
491s Paired library # 0
491s  -p (paired-end sequences)
491s  Left sequences: ecoli_1K_1.fq
491s  Right sequences: ecoli_1K_2.fq
491s  Average length: automatic detection
491s  Standard deviation: automatic detection
491s 
491s Ray command: 
491s mpiexec -n 2 Ray \
491s  -k \
491s  31 \
491s  -p \
491s  ecoli_1K_1.fq \
491s  ecoli_1K_2.fq \
491s  -o \
491s  test3
491s 
491s Rank 0 wrote test3/RayCommand.txt
491s 
491s k-mer length: 31
491s Rank 0: assembler memory usage: 46336 KiB
491s Rank 1: assembler memory usage: 112128 KiB
491s Rank 0: assembler memory usage: 112192 KiB
491s Rank 1: Rank= 1 Size= 2 ProcessIdentifier= 2332
491s Rank 0: Rank= 0 Size= 2 ProcessIdentifier= 2331
491s Rank 0: testing the network, please wait...
491s 
491s Rank 0 is testing the network [0/1000]
491s Rank 1 is testing the network [0/1000]
491s Rank 1 is testing the network [1000/1000]
491s Rank 1: mode round trip latency when requesting a reply for a message of 4000 bytes is 3 microseconds (10^-6 seconds)
491s Rank 1: average round trip latency when requesting a reply for a message of 4000 bytes is 8 microseconds (10^-6 seconds)
491s Rank 0 is testing the network [1000/1000]
491s Rank 0: mode round trip latency when requesting a reply for a message of 4000 bytes is 3 microseconds (10^-6 seconds)
491s Rank 0: average round trip latency when requesting a reply for a message of 4000 bytes is 9 microseconds (10^-6 seconds)
491s 
491s Rank 0 wrote test3/NetworkTest.txt
491s 
491s 
491s ***
491s Step: Network testing
491s Date: Wed Mar 27 06:34:57 2024
491s Elapsed time: 0 seconds
491s Since beginning: 0 seconds
491s ***
491s 
491s 
491s Rank 1 is fetching file ecoli_1K_2.fq with lazy loading (please wait...)
491s Rank 0 is fetching file ecoli_1K_1.fq with lazy loading (please wait...)
491s Rank 0: File ecoli_1K_1.fq (Number 0) has 2054 sequences
491s Rank 1: File ecoli_1K_2.fq (Number 1) has 2054 sequences
491s Rank 0 wrote test3/NumberOfSequences.txt
491s Rank 0 wrote test3/SequencePartition.txt
491s 
491s ***
491s Step: Counting sequences to assemble
491s Date: Wed Mar 27 06:34:57 2024
491s Elapsed time: 0 seconds
491s Since beginning: 0 seconds
491s ***
491s 
491s 
491s Rank 1 is loading sequence reads
491s Rank 0 is loading sequence reads
491s Rank 0 : partition is [0;2053], 2054 sequence reads
491s Rank 0 is fetching file ecoli_1K_1.fq with lazy loading (please wait...)
491s Rank 1 : partition is [2054;4107], 2054 sequence reads
491s Rank 1 is fetching file ecoli_1K_2.fq with lazy loading (please wait...)
491s Rank 0 has 0 sequence reads
491s Rank 1 has 0 sequence reads
491s Rank 0: assembler memory usage: 121024 KiB
491s Rank 1: assembler memory usage: 121024 KiB
491s Rank 0 has 2054 sequence reads (completed)
491s Rank 1 has 2054 sequence reads (completed)
491s 
491s ***
491s Step: Sequence loading
491s Date: Wed Mar 27 06:34:57 2024
491s Elapsed time: 0 seconds
491s Since beginning: 0 seconds
491s ***
491s 
491s 
491s [BloomFilter] allocated 127352 bytes for table with 1018784 bits
491s [BloomFilter] allocated 127352 bytes for table with 1018784 bits
491s Rank 1 created its Bloom filter
491s Rank 0 created its Bloom filter
491s Rank 1 is counting k-mers in sequence reads [1/2054]
491s Rank 0 is counting k-mers in sequence reads [1/2054]
492s Rank 1 is counting k-mers in sequence reads [2054/2054] (completed)
492s Rank 1 : VirtualCommunicator (service provided by BufferedData): 114119 virtual messages generated 229 real messages (0.200668%)
492s Rank 0 is counting k-mers in sequence reads [2054/2054] (completed)
492s Rank 0 : VirtualCommunicator (service provided by BufferedData): 116591 virtual messages generated 234 real messages (0.200702%)
492s 
492s 
492s ***
492s Step: K-mer counting
492s Date: Wed Mar 27 06:34:58 2024
492s Elapsed time: 1 seconds
492s Since beginning: 1 seconds
492s ***
492s 
492s 
492s Rank 0 number of set bits in the Bloom filter: [ 4119 / 1018784 ] (0.404306%)
492s Rank 1 number of set bits in the Bloom filter: [ 3683 / 1018784 ] (0.361509%)
492s Rank 1 destroyed its Bloom filter
492s Rank 1 has 922 k-mers (completed)
492s Rank 0 destroyed its Bloom filter
492s [BloomFilter] Rank 1: k-mers sampled -> 922, k-mers dropped -> 0 (0%), k-mers accepted -> 922 (100%)
492s Rank 1: assembler memory usage: 121024 KiB
492s Rank 0 has 1032 k-mers (completed)
492s [BloomFilter] Rank 0: k-mers sampled -> 1032, k-mers dropped -> 0 (0%), k-mers accepted -> 1032 (100%)
492s Rank 0: assembler memory usage: 117312 KiB
493s 
493s 
493s Rank 0: the minimum coverage is 3
493s Rank 0: the peak coverage is 3
493s Warning: no peak observed in the k-mer coverage distribution.
493s to deal with the sequencing error rate, try to lower the k-mer length (-k)
493s If you are using RNA-Seq or metagenomic data, then you can ignore this warning.
493s 
493s ***
493s Step: Coverage distribution analysis
493s Date: Wed Mar 27 06:34:58 2024
493s Elapsed time: 0 seconds
493s Since beginning: 1 seconds
493s ***
493s 
493s 
493s Rank 1 is adding edges [1/2054]
493s 
493s Rank 0 is adding edges [1/2054]
493s Rank 1 is adding edges [2054/2054] (completed)
493s Rank 1 : VirtualCommunicator (service provided by BufferedData): 224144 virtual messages generated 897 real messages (0.400189%)
493s Rank 1 : VirtualCommunicator (service provided by BufferedData): 224144 virtual messages generated 897 real messages (0.400189%)
493s Rank 0 is adding edges [2054/2054] (completed)
493s Rank 0 : VirtualCommunicator (service provided by BufferedData): 229094 virtual messages generated 917 real messages (0.400272%)
493s Rank 0 : VirtualCommunicator (service provided by BufferedData): 229094 virtual messages generated 917 real messages (0.400272%)
493s 
493s ***
493s Step: Graph construction
493s Date: Wed Mar 27 06:34:59 2024
493s Elapsed time: 1 seconds
493s Since beginning: 2 seconds
493s Rank 1 has 922 vertices (completed)
493s Rank 1: assembler memory usage: 121024 KiB
493s ***
493s 
493s 
493s Rank 0 has 1032 vertices (completed)
493s Rank 0: assembler memory usage: 117312 KiB
494s Rank 1 is purging edges [1/922]
494s Rank 0 is purging edges [1/1032]
494s Rank 1 is purging edges [922/922] (completed)
494s Rank 1: assembler memory usage: 121024 KiB
494s VirtualProcessor: completed jobs: 922
494s Rank 1 : VirtualCommunicator (service provided by VirtualCommunicator): 1842 virtual messages generated 11 real messages (0.597177%)
494s Rank 0 is purging edges [1032/1032] (completed)
494s Rank 0: assembler memory usage: 117504 KiB
494s VirtualProcessor: completed jobs: 1032
494s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 2062 virtual messages generated 9 real messages (0.436469%)
495s Rank 0 wrote test3/degreeDistribution.txt
495s 
495s ***
495s Step: Null edge purging
495s Date: Wed Mar 27 06:35:01 2024
495s Elapsed time: 2 seconds
495s Since beginning: 4 seconds
495s ***
495s 
495s 
495s Rank 0 is selecting optimal read markers [1/2054]
495s Rank 1 is selecting optimal read markers [1/2054]
495s Rank 1: assembler memory usage: 121024 KiB
495s Rank 0: assembler memory usage: 117504 KiB
496s Rank 1 is selecting optimal read markers [2054/2054] (completed)
496s Rank 1: peak number of workers: 1121, maximum: 32768
496s Rank 1 : VirtualCommunicator (service provided by VirtualCommunicator): 118211 virtual messages generated 360 real messages (0.30454%)
496s Rank 1: assembler memory usage: 128704 KiB
496s Rank 1: Freeing unused assembler memory: 4096 KiB freed
496s Rank 1: assembler memory usage: 128704 KiB
497s Rank 0 is selecting optimal read markers [2054/2054] (completed)
497s Rank 0: peak number of workers: 1135, maximum: 32768
497s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 120679 virtual messages generated 369 real messages (0.30577%)
497s Rank 0: assembler memory usage: 125760 KiB
497s Rank 0: Freeing unused assembler memory: 4096 KiB freed
497s Rank 0: assembler memory usage: 125760 KiB
497s 
497s ***
497s Step: Selection of optimal read markers
497s Date: Wed Mar 27 06:35:03 2024
497s Rank 1: memory usage for  optimal read markers= 4096 KiB
497s Rank 1 is creating seeds [1/922]
497s Elapsed time: 2 seconds
497s Since beginning: 6 seconds
497s ***
497s 
497s 
497s Rank 0: memory usage for  optimal read markers= 4096 KiB
497s Rank 0 is creating seeds [1/1032]
497s Rank 1: assembler memory usage: 128704 KiB
497s Rank 0: assembler memory usage: 125760 KiB
498s Rank 1 has 1 seeds
498s Rank 1 is creating seeds [922/922] (completed)
498s Rank 1: peak number of workers: 916, maximum: 32768
498s Rank 1 : VirtualCommunicator (service provided by VirtualCommunicator): 6519 virtual messages generated 1755 real messages (26.9213%)
498s Rank 1 runtime statistics for seeding algorithm: 
498s Rank 1 Skipped paths because of dead end for head: 0
498s Rank 1 Skipped paths because of dead end for tail: 0
498s Rank 1 Skipped paths because of two dead ends: 0
498s Rank 1 Skipped paths because of bubble weak component: 0
498s Rank 1 Skipped paths because of short length: 921
498s Rank 1 Skipped paths because of bad ownership: 0
498s Rank 1 Skipped paths because of low coverage: 0
498s Rank 1 Eligible paths: 1
498s Rank 1: assembler memory usage: 128704 KiB
498s Rank 0 has 0 seeds
498s Rank 0 is creating seeds [1032/1032] (completed)
498s Rank 0: peak number of workers: 998, maximum: 32768
498s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 7093 virtual messages generated 1744 real messages (24.5876%)
498s Rank 0 runtime statistics for seeding algorithm: 
498s Rank 0 Skipped paths because of dead end for head: 0
498s Rank 0 Skipped paths because of dead end for tail: 0
498s Rank 0 Skipped paths because of two dead ends: 0
498s Rank 0 Skipped paths because of bubble weak component: 0
498s Rank 0 Skipped paths because of short length: 1031
498s Rank 0 Skipped paths because of bad ownership: 1
498s Rank 0 Skipped paths because of low coverage: 0
498s Rank 0 Eligible paths: 0
498s Rank 0: assembler memory usage: 125760 KiB
498s Rank 1 has 1 seeds to register.
498s Rank 0 registered -1/0
498s Rank 0 registered its seeds
498s Rank 1 registered 0/1
498s Rank 1 registered 0/1
498s Rank 1 registered its seeds
498s VirtualProcessor: completed jobs: 0
498s VirtualProcessor: completed jobs: 0
498s Rank 1 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%)
498s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%)
498s Rank 0 freed 4194304 bytes from the path memory pool (chunks: 1)
498s Rank 1 freed 4194304 bytes from the path memory pool (chunks: 1)
508s Rank 0: gossiping generated 0 messages (gossips: 0 ---> 0)
508s Rank 1: gossiping generated 0 messages (gossips: 0 ---> 0)
508s Rank 0 merged its seeds: 0 seeds -> 0 seeds
508s Rank 1 merged its seeds: 1 seeds -> 1 seeds
508s 
508s ***
508s Step: Detection of assembly seeds
508s Date: Wed Mar 27 06:35:14 2024
508s Elapsed time: 11 seconds
508s Since beginning: 17 seconds
508s ***
508s 
508s 
508s Rank 0 detected 0 library lengths
508s Rank 0 is calculating library lengths [0/0] (completed)
508s Rank 0: peak number of workers: 0, maximum: 32768
508s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%)
508s Rank 0: assembler memory usage: 129856 KiB
508s Rank 1 is calculating library lengths [1/1]
508s Rank 1 detected 1737 library lengths
508s Rank 1 is calculating library lengths [1/1] (completed)
508s Rank 1: peak number of workers: 1, maximum: 32768
508s Rank 1 : VirtualCommunicator (service provided by VirtualCommunicator): 7983 virtual messages generated 7983 real messages (100%)
508s Rank 1: assembler memory usage: 161536 KiB
508s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0%)
508s Rank 1 : VirtualCommunicator (service provided by BufferedData): 67 virtual messages generated 1 real messages (1.49254%)
508s 
508s Mode= 2 signalAverage= 9
508s CURRENT IS NOISE, 244
508s GOT HIT 212
508s 
508s 
508s Library # 0 (Automatic) -> average length: 214 and standard deviation: 10
508s 
508s ***
508s Step: Estimation of outer distances for paired reads
508s Date: Wed Mar 27 06:35:14 2024
508s Elapsed time: 0 seconds
508s Since beginning: 17 seconds
508s ***
508s 
508s 
508s Rank 0 is extending seeds [0/0] (completed)
508s Rank 0 extended 0 seeds out of 0 (0.00%)
508s Rank 0: assembler memory usage: 129856 KiB
508s Rank 1 starts on seed 0, length is 845, flow 0 [0/1]
513s Rank 1 traversed 1000 nucleotide symbols
513s Rank 1: assembler memory usage: 165632 KiB
513s Rank 1 is extending seeds [1/1] (completed)
513s Rank 1 extended 1 seeds out of 1 (100.00%)
513s Rank 1: assembler memory usage: 165632 KiB
513s Rank 0 starting fusions
513s 
513s ***
513s Step: Bidirectional extension of seeds
513s Date: Wed Mar 27 06:35:19 2024
513s Elapsed time: 5 seconds
513s Since beginning: 22 seconds
513s ***
513s 
513s 
513s Rank 0: starting clear step. cycleNumber= 0
514s Rank 1 adding 0 new fusions
514s Rank 0 adding 0 new fusions
514s Rank 0 cleared, 0 paths
514s Rank 1 cleared, 1 paths
514s Rank 0: starting distribution step
514s Rank 0 is distributing fusions [0/0] (completed)
514s Rank 1 is distributing fusions [1/1]
514s Rank 1: assembler memory usage: 165632 KiB
514s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0%)
514s Date: Wed Mar 27 06:35:20 2024
514s Rank 0: assembler memory usage: 129856 KiB
514s Date: Wed Mar 27 06:35:20 2024
514s Rank 1 is distributing fusions [1/1] (completed)
514s Rank 1 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 7 real messages (0.721649%)
514s Rank 1: assembler memory usage: 165632 KiB
514s Date: Wed Mar 27 06:35:20 2024
514s Rank 0 tells others to compute fusions.
514s Rank 1 FusionTaskCreator assignNextTask [0/2]
514s Rank 1: assembler memory usage: 165632 KiB
514s Rank 0 FusionTaskCreator [0/0]
514s Statistics: all paths: 0 eliminated during fusing: 0
514s Date: Wed Mar 27 06:35:20 2024
514s Rank 0: assembler memory usage: 129856 KiB
514s VirtualProcessor: completed jobs: 0
514s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%)
514s Rank 1 FusionTaskCreator processWorkerResult [0/2]
514s Rank 1: assembler memory usage: 165632 KiB
514s Date: Wed Mar 27 06:35:20 2024
514s Rank 1 FusionTaskCreator [2/2]
514s Statistics: all paths: 1 eliminated during fusing: 0
514s Rank 1: assembler memory usage: 165632 KiB
514s VirtualProcessor: completed jobs: 2
514s Rank 1 : VirtualCommunicator (service provided by VirtualCommunicator): 10893 virtual messages generated 10893 real messages (100%)
514s Rank 0: starting clear step. cycleNumber= 1
515s Rank 1 adding 0 new fusions
515s Rank 0 adding 0 new fusions
515s Rank 0 cleared, 0 paths
515s Rank 1 cleared, 1 paths
515s Rank 0 is distributing fusions [0/0] (completed)
515s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0%)
515s Rank 1 is distributing fusions [1/1]
515s Rank 1: assembler memory usage: 165632 KiB
515s Rank 0: assembler memory usage: 129856 KiB
515s Date: Wed Mar 27 06:35:21 2024
515s Date: Wed Mar 27 06:35:21 2024
515s Rank 1 is distributing fusions [1/1] (completed)
515s Rank 1 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 7 real messages (0.721649%)
515s Rank 1: assembler memory usage: 165632 KiB
515s Date: Wed Mar 27 06:35:21 2024
515s Rank 0 JoinerTaskCreator [0/0]
515s Statistics: all paths: 0 eliminated during joining: 0
515s Rank 1 JoinerTaskCreator assignNextTask [0/2]
515s Rank 0: assembler memory usage: 129856 KiB
515s Rank 1: assembler memory usage: 165632 KiB
515s Date: Wed Mar 27 06:35:21 2024
515s Date: Wed Mar 27 06:35:21 2024
515s VirtualProcessor: completed jobs: 0
515s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%)
515s Rank 1 JoinerTaskCreator processWorkerResult [0/2]
515s Rank 1: assembler memory usage: 165632 KiB
515s Date: Wed Mar 27 06:35:21 2024
515s Rank 1 JoinerTaskCreator [2/2]
515s Statistics: all paths: 1 eliminated during joining: 0
515s Rank 1: assembler memory usage: 165632 KiB
515s Date: Wed Mar 27 06:35:21 2024
515s VirtualProcessor: completed jobs: 2
515s Rank 1 : VirtualCommunicator (service provided by VirtualCommunicator): 13803 virtual messages generated 13803 real messages (100%)
515s Rank 1 adding 0 new fusions
516s Rank 0 adding 0 new fusions
516s Rank 1 cleared, 1 paths
516s Rank 0 cleared, 0 paths
516s Rank 0: starting distribution step
516s Rank 0 is distributing fusions [0/0] (completed)
516s Rank 1 is distributing fusions [1/1]
516s Rank 1: assembler memory usage: 165632 KiB
516s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0%)
516s Rank 0: assembler memory usage: 129856 KiB
516s Date: Wed Mar 27 06:35:22 2024
516s Date: Wed Mar 27 06:35:22 2024
516s Rank 1 is distributing fusions [1/1] (completed)
516s Rank 1 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 7 real messages (0.721649%)
516s Rank 1: assembler memory usage: 165632 KiB
516s Date: Wed Mar 27 06:35:22 2024
516s Rank 0 tells others to compute fusions.
516s Rank 0 FusionTaskCreator [0/0]
516s Rank 1 FusionTaskCreator assignNextTask [0/2]
516s Rank 1: assembler memory usage: 165632 KiB
516s Statistics: all paths: 0 eliminated during fusing: 0
516s Rank 0: assembler memory usage: 129856 KiB
516s Date: Wed Mar 27 06:35:22 2024
516s VirtualProcessor: completed jobs: 0
516s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%)
516s Rank 1 FusionTaskCreator processWorkerResult [0/2]
516s Rank 1: assembler memory usage: 165632 KiB
516s Date: Wed Mar 27 06:35:22 2024
516s Rank 1 FusionTaskCreator [2/2]
516s Statistics: all paths: 1 eliminated during fusing: 0
516s Rank 1: assembler memory usage: 165632 KiB
516s VirtualProcessor: completed jobs: 2
516s Rank 1 : VirtualCommunicator (service provided by VirtualCommunicator): 16713 virtual messages generated 16713 real messages (100%)
516s Rank 0: starting clear step. cycleNumber= 2
516s Rank 0 adding 0 new fusions
517s Rank 1 adding 0 new fusions
517s Rank 0 cleared, 0 paths
517s Rank 1 cleared, 1 paths
517s Rank 0 is distributing fusions [0/0] (completed)
517s Rank 1 is distributing fusions [1/1]
517s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0%)
517s Rank 1: assembler memory usage: 165632 KiB
517s Rank 0: assembler memory usage: 129856 KiB
517s Date: Wed Mar 27 06:35:23 2024
517s Date: Wed Mar 27 06:35:23 2024
517s Rank 1 is distributing fusions [1/1] (completed)
517s Rank 1 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 7 real messages (0.721649%)
517s Rank 1: assembler memory usage: 165632 KiB
517s Date: Wed Mar 27 06:35:23 2024
517s Rank 0 JoinerTaskCreator [0/0]
517s Rank 1 JoinerTaskCreator assignNextTask [0/2]
517s Statistics: all paths: 0 eliminated during joining: 0
517s Rank 1: assembler memory usage: 165632 KiB
517s Rank 0: assembler memory usage: 129856 KiB
517s Date: Wed Mar 27 06:35:23 2024
517s Date: Wed Mar 27 06:35:23 2024
517s VirtualProcessor: completed jobs: 0
517s Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%)
517s Rank 1 JoinerTaskCreator processWorkerResult [0/2]
517s Rank 1: assembler memory usage: 165632 KiB
517s Date: Wed Mar 27 06:35:23 2024
517s Rank 1 JoinerTaskCreator [2/2]
517s Statistics: all paths: 1 eliminated during joining: 0
517s Rank 1: assembler memory usage: 165632 KiB
517s Date: Wed Mar 27 06:35:23 2024
517s VirtualProcessor: completed jobs: 2
517s Rank 1 : VirtualCommunicator (service provided by VirtualCommunicator): 19623 virtual messages generated 19623 real messages (100%)
518s Rank 1 adding 0 new fusions
518s Rank 0 adding 0 new fusions
518s Rank 0 cleared, 0 paths
518s Rank 1 cleared, 1 paths
518s Rank 0: starting distribution step
518s Rank 0 is distributing fusions [0/0] (completed)
518s Rank 1 is distributing fusions [1/1]
518s Rank 1: assembler memory usage: 165632 KiB
518s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0%)
518s Rank 0: assembler memory usage: 129856 KiB
518s Date: Wed Mar 27 06:35:24 2024
518s Date: Wed Mar 27 06:35:24 2024
518s Rank 1 is distributing fusions [1/1] (completed)
518s Rank 1 : VirtualCommunicator (service provided by BufferedData): 970 virtual messages generated 7 real messages (0.721649%)
518s Rank 1: assembler memory usage: 165632 KiB
518s Date: Wed Mar 27 06:35:24 2024
518s Rank 0 cycleNumber= 2
518s 
518s ***
518s Step: Merging of redundant paths
518s Date: Wed Mar 27 06:35:24 2024
518s Elapsed time: 5 seconds
518s Since beginning: 27 seconds
518s ***
518s 
518s 
518s Rank 0 appended 0 elements
518s Rank 1 appended 1 elements
518s 
518s ***
518s Step: Generation of contigs
518s Date: Wed Mar 27 06:35:24 2024
518s Elapsed time: 0 seconds
518s Since beginning: 27 seconds
518s ***
518s 
518s Rank 0 finished gathering scaffold links.
518s Rank 0 objectName: 1 => peakCoverage: 237 blockSize: 970
518s Rank 1: gathering scaffold links [1/1] [970/970] (completed)
518s Rank 0 ineligibleObjects: 0/970 (0.00%)
518s Rank 1: assembler memory usage: 165632 KiB
518s contig: 1 vertices: 970 averageCoverage: 237 standardDeviation: 115 peakCoverage: 237 repeatCoverage: 474
518s Rank 0 will write 1 contig lengths
518s Rank 1 finished gathering scaffold links.
518s Rank 0 will solve the scaffolding problem.
518s Welcome to GreedySolver v1.0
518s 1 vertices; 0 edges
518s 1 contigs >= 500
518s Edges in solution: 0
518s 
518s Conflict statistics:
518s 1 scaffolds, 1 >= 500
518s Total: 1000 nucleotides
518s 
518s ***
518s Step: Scaffolding of contigs
518s Date: Wed Mar 27 06:35:24 2024
518s Elapsed time: 0 seconds
518s Since beginning: 27 seconds
518s ***
518s 
518s Rank 0 syncing with master
518s Rank 1 syncing with master
518s 
518s ***
518s Step: Counting sequences to search
518s Date: Wed Mar 27 06:35:24 2024
518s Elapsed time: 0 seconds
518s Since beginning: 27 seconds
518s ***
518s 
518s 
518s Rank 0 will add colors, 0 sequences in 0 files to process
518s Rank 1 will add colors, 0 sequences in 0 files to process
518s Rank 1 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0.00%)
518s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0%)
519s 
519s ***
519s Step: Graph coloring
519s Date: Wed Mar 27 06:35:25 2024
519s Elapsed time: 1 seconds
519s Since beginning: 28 seconds
519s ***
519s 
519s 
519s Rank 0: starting SlaveMode= call_RAY_SLAVE_MODE_CONTIG_BIOLOGICAL_ABUNDANCES
519s Rank 0 shares its counts
519s [IO] Input/output operations for coverage XML objects: 1 / bufferSize: 16777216 bytes
519s Rank 1: starting SlaveMode= call_RAY_SLAVE_MODE_CONTIG_BIOLOGICAL_ABUNDANCES
519s Rank 1 computing contig abundances [1/1] [1/970]
519s Rank 1 computing contig abundances [1/1] [970/970]
519s [IO] Input/output operations for coverage XML objects: 1 / bufferSize: 16777216 bytes
519s 
519s ***
519s Step: Counting contig biological abundances
519s Date: Wed Mar 27 06:35:25 2024
519s Elapsed time: 0 seconds
519s Since beginning: 28 seconds
519s ***
519s 
519s 
519s Rank 0 colored the graph with 0 real colors using 1 virtual colors
519s Rank 1 colored the graph with 0 real colors using 1 virtual colors
519s Rank 0 : VirtualCommunicator (service provided by BufferedData): 0 virtual messages generated 0 real messages (0%)
519s Rank 1 : VirtualCommunicator (service provided by BufferedData): 3880 virtual messages generated 9 real messages (0.23%)
519s 
519s ***
519s Step: Counting sequence biological abundances
519s Date: Wed Mar 27 06:35:25 2024
519s Elapsed time: 0 seconds
519s Since beginning: 28 seconds
519s ***
519s 
519s 
519s [IO] Input/output operations for sequence XML objects: 0 / bufferSize: 16777216 bytes
519s [IO] Input/output operations for identification TSV objects: 0 / bufferSize: 16777216 bytes
519s [IO] Input/output operations for sequence XML objects: 0 / bufferSize: 16777216 bytes
519s [IO] Input/output operations for identification TSV objects: 0 / bufferSize: 16777216 bytes
520s Rank 1 has exactly 0 k-mer physical colors for the phylogeny.
520s Rank 0 has exactly 0 k-mer physical colors for the phylogeny.
520s 
520s 
520s [TaxonomyViewer::copyTaxonsFromSecondaryTable] 0 -> 0
520s Rank 0 is starting taxon syncing across the compute tribe.
520s 
520s ***
520s Step: Loading taxons
520s Date: Wed Mar 27 06:35:26 2024
520s Elapsed time: 1 seconds
520s Since beginning: 29 seconds
520s ***
520s 
520s Rank 0 synced taxons across the grid with 2 poor slaves.
520s [TaxonomyViewer::copyTaxonsFromSecondaryTable] 0 -> 0
520s [TaxonomyViewer::copyTaxonsFromSecondaryTable] 0 -> 0
520s Rank 1 has 0 taxons after syncing with master
520s Rank 0 has 0 taxons after syncing with master
521s 
521s 
521s 
521s ***
521s Step: Loading tree
521s Date: Wed Mar 27 06:35:27 2024
521s Elapsed time: 1 seconds
521s Since beginning: 30 seconds
521s ***
521s 
522s Rank 0 has exactly 0 k-mer physical colors related to EMBL CDS objects.
522s Rank 1 has exactly 0 k-mer physical colors related to EMBL CDS objects.
522s 
522s Rank 0: counting ontology terms in the graph...
522s 
522s Rank 1: counting ontology terms in the graph...
522s Rank 0: 0 have some biological signal
523s Rank 1: 0 have some biological signal
523s Number of dereferenced alternate handles: 0
523s Number of k-mer observations with gene ontology terms: 0
523s Rank 0: synced ontology term profiles with master
523s Number of dereferenced alternate handles: 0
523s Number of k-mer observations with gene ontology terms: 0
523s Rank 0 Synchronizing kmer observations with gene ontology terms: 0 (from 1)
523s Rank 1: synced ontology term profiles with master
523s Rank 0: synchronization is complete!
523s Rank 0: ontology terms with biological signal: 0
523s Populated recursive values...
523s Gene ontology terms without depth information: 0
523s [GeneOntology] maximum depth for GeneOntologyDomain 
 is 0
523s [GeneOntology] maximum depth for GeneOntologyDomain [GeneOntology] maximum depth for GeneOntologyDomain  is 0
523s 
523s ***
523s Step: Processing gene ontologies
523s Date: Wed Mar 27 06:35:29 2024
523s Elapsed time: 2 seconds
523s Since beginning: 32 seconds
523s ***
523s 
523s Rank 0: the CorePlugin GenomeNeighbourhood is disabled...
523s Rank 1: the CorePlugin GenomeNeighbourhood is disabled...
523s [GenomeNeighbourhood] in final list: 0
523s 
523s ***
523s Step: Computing neighbourhoods
523s Date: Wed Mar 27 06:35:29 2024
523s Elapsed time: 0 seconds
523s Since beginning: 32 seconds
523s ***
523s 
523s Contigs >= 100 nt
523s  Number: 1
523s  Total length: 1000
523s  Average: 1000
523s  N50: 1000
523s  Median: 1000
523s  Largest: 1000
523s Contigs >= 500 nt
523s  Number: 1
523s  Total length: 1000
523s  Average: 1000
523s  N50: 1000
523s  Median: 1000
523s  Largest: 1000
523s Scaffolds >= 100 nt
523s  Number: 1
523s  Total length: 1000
523s  Average: 1000
523s  N50: 1000
523s  Median: 1000
523s  Largest: 1000
523s Scaffolds >= 500 nt
523s  Number: 1
523s  Total length: 1000
523s  Average: 1000
523s  N50: 1000
523s  Median: 1000
523s  Largest: 1000
523s 
523s Rank 0 wrote test3/Contigs.fasta
523s Rank 0 wrote test3/Scaffolds.fasta
523s Check for test3/*
523s 
523s 
523s autopkgtest [06:35:29]: test run-unit-test: -----------------------]
524s autopkgtest [06:35:30]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
524s run-unit-test        PASS
524s autopkgtest [06:35:30]: @@@@@@@@@@@@@@@@@@@@ summary
524s run-unit-test        PASS
537s Creating nova instance adt-noble-ppc64el-ray-20240327-062646-juju-7f2275-prod-proposed-migration-environment-2-b6f73264-b7af-404d-b4c5-b44f49e1cd95 from image adt/ubuntu-noble-ppc64el-server-20240326.img (UUID a856d654-cf86-4db9-9789-e03c818e8ed3)...