0s autopkgtest [21:51:20]: starting date and time: 2024-03-17 21:51:20+0000
  0s autopkgtest [21:51:20]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [21:51:20]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3zvzmrdr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-cran-spp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-1.secgroup --name adt-noble-ppc64el-r-cran-spp-20240317-215120-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 92s autopkgtest [21:52:52]: testbed dpkg architecture: ppc64el
 92s autopkgtest [21:52:52]: testbed apt version: 2.7.12
 92s autopkgtest [21:52:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 93s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 93s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
 94s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3676 kB]
 94s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [484 kB]
 94s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
 94s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [643 kB]
 94s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
 94s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
 94s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
 94s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3974 kB]
 94s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
 94s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [48.0 kB]
 94s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
 97s Fetched 9012 kB in 2s (3955 kB/s)
 98s Reading package lists...
100s Reading package lists...
100s Building dependency tree...
100s Reading state information...
100s Calculating upgrade...
100s The following packages will be REMOVED:
100s   libssl3
100s The following NEW packages will be installed:
100s   libssl3t64
100s The following packages have been kept back:
100s   curl
100s The following packages will be upgraded:
100s   openssl
101s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded.
101s Need to get 3195 kB of archives.
101s After this operation, 6144 B of additional disk space will be used.
101s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu1 [1028 kB]
101s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu1 [2168 kB]
102s Fetched 3195 kB in 1s (2831 kB/s)
102s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70095 files and directories currently installed.)
102s Preparing to unpack .../openssl_3.0.13-0ubuntu1_ppc64el.deb ...
102s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
102s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested:
102s  wget depends on libssl3 (>= 3.0.0).
102s  tnftp depends on libssl3 (>= 3.0.0).
102s  tcpdump depends on libssl3 (>= 3.0.0).
102s  systemd-resolved depends on libssl3 (>= 3.0.0).
102s  systemd depends on libssl3 (>= 3.0.0).
102s  sudo depends on libssl3 (>= 3.0.0).
102s  rsync depends on libssl3 (>= 3.0.0).
102s  python3-cryptography depends on libssl3 (>= 3.0.0).
102s  openssh-server depends on libssl3 (>= 3.0.10).
102s  openssh-client depends on libssl3 (>= 3.0.10).
102s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
102s  libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0).
102s  libssh-4:ppc64el depends on libssl3 (>= 3.0.0).
102s  libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0).
102s  libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0).
102s  libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0).
102s  libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0).
102s  libnvme1 depends on libssl3 (>= 3.0.0).
102s  libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0).
102s  libkmod2:ppc64el depends on libssl3 (>= 3.0.0).
102s  libfido2-1:ppc64el depends on libssl3 (>= 3.0.0).
102s  libcurl4:ppc64el depends on libssl3 (>= 3.0.0).
102s  libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0).
102s  kmod depends on libssl3 (>= 3.0.0).
102s  dhcpcd-base depends on libssl3 (>= 3.0.0).
102s  bind9-libs:ppc64el depends on libssl3 (>= 3.0.0).
102s 
102s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70095 files and directories currently installed.)
102s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ...
102s Selecting previously unselected package libssl3t64:ppc64el.
102s (Reading database ... 
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(Reading database ... 60%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70084 files and directories currently installed.)
102s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_ppc64el.deb ...
102s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu1) ...
102s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu1) ...
102s Setting up openssl (3.0.13-0ubuntu1) ...
102s Processing triggers for man-db (2.12.0-3) ...
103s Processing triggers for libc-bin (2.39-0ubuntu2) ...
103s Reading package lists...
104s Building dependency tree...
104s Reading state information...
104s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
104s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
104s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
104s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
104s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
106s Reading package lists...
106s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s Calculating upgrade...
106s The following packages have been kept back:
106s   curl
106s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
106s Reading package lists...
106s Building dependency tree...
106s Reading state information...
106s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
109s autopkgtest [21:53:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024
109s autopkgtest [21:53:09]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spp
111s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-spp 1.16.0-2 (dsc) [2067 B]
111s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-spp 1.16.0-2 (tar) [98.1 kB]
111s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-spp 1.16.0-2 (diff) [2404 B]
111s gpgv: Signature made Wed Sep 23 10:45:09 2020 UTC
111s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
111s gpgv:                issuer "tille@debian.org"
111s gpgv: Can't check signature: No public key
111s dpkg-source: warning: cannot verify inline signature for ./r-cran-spp_1.16.0-2.dsc: no acceptable signature found
111s autopkgtest [21:53:11]: testing package r-cran-spp version 1.16.0-2
112s autopkgtest [21:53:12]: build not needed
113s autopkgtest [21:53:13]: test pkg-r-autopkgtest: preparing testbed
115s Reading package lists...
115s Building dependency tree...
115s Reading state information...
115s Starting pkgProblemResolver with broken count: 0
115s Starting 2 pkgProblemResolver with broken count: 0
115s Done
115s The following additional packages will be installed:
115s   build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu
115s   cpp-powerpc64le-linux-gnu curl dctrl-tools fontconfig fontconfig-config
115s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-powerpc64le-linux-gnu
115s   g++-powerpc64le-linux-gnu gcc gcc-13 gcc-13-powerpc64le-linux-gnu
115s   gcc-powerpc64le-linux-gnu gfortran gfortran-13
115s   gfortran-13-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu
115s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev
115s   libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
115s   libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
115s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
115s   libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
115s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
115s   liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
116s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
116s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
116s   libpng-dev libpsl5t64 libquadmath0 libreadline-dev libsharpyuv0 libsm6
116s   libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev
116s   libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2
116s   libxrender1 libxss1 libxt6 linux-libc-dev littler pkg-config
116s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
116s   r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
116s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
116s   r-bioc-iranges r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors
116s   r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-catools
116s   r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-formatr
116s   r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-littler
116s   r-cran-pkgkitten r-cran-rcpp r-cran-rcurl r-cran-snow r-cran-spp
116s   rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
116s Suggested packages:
116s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
116s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
116s   gdb-powerpc64le-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
116s   liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev
116s   libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
116s   libboost-contract1.83-dev libboost-coroutine1.83-dev
116s   libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
116s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
116s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
116s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
116s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
116s   libboost-numpy1.83-dev libboost-program-options1.83-dev
116s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
116s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
116s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
116s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
116s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
116s   glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
116s   tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
116s   texlive-base texlive-latex-base texlive-plain-generic
116s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
116s   texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
116s   r-bioc-delayedarray r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2
116s   r-bioc-annotate r-cran-runit r-cran-foreach r-cran-bbmisc r-cran-doparallel
116s   r-bioc-variantannotation r-bioc-genomicalignments r-bioc-shortread
116s   r-bioc-biocstyle r-cran-knitr r-cran-batchtools r-cran-data.table
116s   r-bioc-bsgenome r-bioc-genomicfeatures r-cran-r.utils r-cran-matrix
116s   r-bioc-summarizedexperiment r-bioc-rtracklayer r-bioc-gviz
116s   r-bioc-annotationhub r-bioc-dexseq r-bioc-edger r-bioc-keggrest
116s   r-cran-digest r-cran-rmarkdown r-bioc-graph r-cran-mass r-cran-rpart
116s   r-cran-rstudioapi r-cran-shiny r-cran-jsonlite r-cran-getopt r-cran-inline
116s   r-cran-rmpi r-cran-rlecuyer
116s Recommended packages:
116s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended
116s   r-doc-html r-cran-bench r-cran-brio r-cran-callr r-cran-cli r-cran-covr
116s   r-cran-decor r-cran-desc r-cran-ggplot2 r-cran-glue r-cran-knitr
116s   r-cran-lobstr r-cran-mockery r-cran-progress r-cran-rmarkdown r-cran-scales
116s   r-cran-testthat r-cran-tibble r-cran-vctrs r-cran-withr r-cran-testit
116s   r-cran-survival r-cran-xml libfile-mimeinfo-perl libnet-dbus-perl
116s   libx11-protocol-perl x11-utils x11-xserver-utils
116s The following packages will be REMOVED:
116s   libcurl4 libpsl5
116s The following NEW packages will be installed:
116s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu
116s   cpp-powerpc64le-linux-gnu dctrl-tools fontconfig fontconfig-config
116s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-powerpc64le-linux-gnu
116s   g++-powerpc64le-linux-gnu gcc gcc-13 gcc-13-powerpc64le-linux-gnu
116s   gcc-powerpc64le-linux-gnu gfortran gfortran-13
116s   gfortran-13-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu
116s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev
116s   libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
116s   libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
116s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
116s   libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
116s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
116s   liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
116s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
116s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
116s   libpng-dev libpsl5t64 libquadmath0 libreadline-dev libsharpyuv0 libsm6
116s   libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev
116s   libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2
116s   libxrender1 libxss1 libxt6 linux-libc-dev littler pkg-config
116s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
116s   r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
116s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges
116s   r-bioc-iranges r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4vectors
116s   r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-catools
116s   r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-formatr
116s   r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-littler
116s   r-cran-pkgkitten r-cran-rcpp r-cran-rcurl r-cran-snow r-cran-spp
116s   rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
116s The following packages will be upgraded:
116s   curl
116s 1 upgraded, 139 newly installed, 2 to remove and 0 not upgraded.
116s Need to get 201 MB/201 MB of archives.
116s After this operation, 703 MB of additional disk space will be used.
116s Get:1 /tmp/autopkgtest.PyOlyr/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B]
116s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1 [59.0 kB]
116s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el curl ppc64el 8.5.0-2ubuntu7 [234 kB]
116s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu7 [428 kB]
116s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu2 [21.3 kB]
116s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el linux-libc-dev ppc64el 6.8.0-11.11 [1585 kB]
116s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB]
116s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1build1 [262 kB]
116s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3 [79.2 kB]
116s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB]
116s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu2 [2102 kB]
116s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3 [864 kB]
116s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1 [61.2 kB]
116s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [10.7 MB]
117s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-17ubuntu2 [1038 B]
117s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B]
117s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB]
117s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240303-1ubuntu1 [48.1 kB]
117s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB]
117s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240303-1ubuntu1 [32.4 kB]
117s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240303-1ubuntu1 [10.7 kB]
117s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240303-1ubuntu1 [2973 kB]
117s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240303-1ubuntu1 [1325 kB]
117s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240303-1ubuntu1 [2734 kB]
117s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240303-1ubuntu1 [1194 kB]
117s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240303-1ubuntu1 [158 kB]
117s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-17ubuntu2 [1581 kB]
117s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [20.6 MB]
117s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-17ubuntu2 [477 kB]
117s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B]
117s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B]
117s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-17ubuntu2 [2445 kB]
118s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [12.2 MB]
118s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-17ubuntu2 [14.5 kB]
118s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B]
118s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B]
118s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B]
118s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el dctrl-tools ppc64el 2.24-3build2 [70.6 kB]
118s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
118s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
118s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB]
118s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB]
118s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1ubuntu1 [192 kB]
118s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB]
118s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran-13-dev ppc64el 13.2.0-17ubuntu2 [604 kB]
118s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [11.2 MB]
118s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13 ppc64el 13.2.0-17ubuntu2 [10.3 kB]
118s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1030 B]
118s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran ppc64el 4:13.2.0-7ubuntu1 [1170 B]
118s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el icu-devtools ppc64el 74.2-1ubuntu1 [246 kB]
118s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB]
118s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas-dev ppc64el 3.12.0-3 [301 kB]
119s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost1.83-dev ppc64el 1.83.0-2ubuntu1 [15.3 MB]
119s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-dev ppc64el 1.83.0.1ubuntu2 [4312 B]
119s Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5ubuntu1 [51.2 kB]
119s Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB]
119s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB]
119s Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B]
119s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB]
119s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB]
119s Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3 [25.1 kB]
119s Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
119s Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB]
119s Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB]
119s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB]
119s Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build2 [49.3 kB]
119s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu-dev ppc64el 74.2-1ubuntu1 [12.5 MB]
119s Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB]
119s Get:69 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-2ubuntu1 [357 kB]
119s Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
119s Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B]
119s Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B]
119s Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB]
119s Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack-dev ppc64el 3.12.0-3 [6100 kB]
120s Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB]
120s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libncurses-dev ppc64el 6.4+20240113-1ubuntu1 [485 kB]
120s Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2 [158 kB]
120s Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2 [21.4 kB]
120s Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.51.0+ds-4 [266 kB]
120s Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.51.0+ds-4 [49.5 kB]
120s Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.51.0+ds-4 [31.2 kB]
120s Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29 [13.5 kB]
120s Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29 [8710 B]
120s Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu1 [245 kB]
120s Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu1 [228 kB]
120s Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-posix3 ppc64el 10.42-4ubuntu1 [7016 B]
120s Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-dev ppc64el 10.42-4ubuntu1 [794 kB]
120s Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libpkgconf3 ppc64el 1.8.1-2 [36.9 kB]
120s Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3ubuntu1 [902 kB]
120s Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el libpng-dev ppc64el 1.6.43-1 [327 kB]
120s Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el libreadline-dev ppc64el 8.2-3 [226 kB]
120s Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB]
120s Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build2 [18.5 kB]
120s Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB]
120s Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB]
120s Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB]
120s Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB]
120s Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB]
120s Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B]
120s Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB]
120s Get:101 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6 ppc64el 1:1.2.1-1.1 [198 kB]
120s Get:102 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13 [192 kB]
120s Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu3 [192 kB]
121s Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
121s Get:105 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-core ppc64el 4.3.2-1build1 [27.4 MB]
124s Get:106 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-littler ppc64el 0.3.19-1 [95.1 kB]
124s Get:107 http://ftpmaster.internal/ubuntu noble/universe ppc64el littler all 0.3.19-1 [2472 B]
124s Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf-bin ppc64el 1.8.1-2 [22.0 kB]
124s Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf ppc64el 1.8.1-2 [16.7 kB]
124s Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el pkg-config ppc64el 1.8.1-2 [7170 B]
124s Get:111 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma-dev ppc64el 5.4.5-0.3 [243 kB]
124s Get:112 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-dev all 4.3.2-1build1 [4336 B]
124s Get:113 http://ftpmaster.internal/ubuntu noble/universe ppc64el pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
124s Get:114 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocgenerics all 0.48.1-2 [595 kB]
124s Get:115 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-formatr all 1.14-1 [152 kB]
124s Get:116 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lambda.r all 1.2.4-2build1 [119 kB]
124s Get:117 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
124s Get:118 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
124s Get:119 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-snow all 1:0.4.4-2 [97.6 kB]
124s Get:120 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-codetools all 0.2-19-1 [90.5 kB]
124s Get:121 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bh all 1.84.0-1 [5962 B]
124s Get:122 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cpp11 all 0.4.7-1 [266 kB]
124s Get:123 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocparallel ppc64el 1.36.0-1 [1351 kB]
124s Get:124 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-s4vectors ppc64el 0.40.2+dfsg-1 [2079 kB]
124s Get:125 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-iranges ppc64el 2.36.0-1 [2263 kB]
124s Get:126 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
124s Get:127 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-xvector ppc64el 0.42.0-1 [626 kB]
124s Get:128 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bitops ppc64el 1.0-7-1 [30.0 kB]
124s Get:129 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rcurl ppc64el 1.98-1.14+dfsg-1 [796 kB]
124s Get:130 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
125s Get:131 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
125s Get:132 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-crayon all 1.5.2-1 [164 kB]
125s Get:133 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biostrings ppc64el 2.70.2+dfsg-1 [13.7 MB]
125s Get:134 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicranges ppc64el 1.54.1+dfsg-1 [1822 kB]
125s Get:135 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-rhtslib ppc64el 2.4.1+dfsg-1 [1548 kB]
125s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el r-bioc-rsamtools ppc64el 2.18.0+dfsg-1build1 [3815 kB]
125s Get:137 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-catools ppc64el 1.18.2-1 [209 kB]
125s Get:138 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
125s Get:139 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rcpp ppc64el 1.0.12-1 [1989 kB]
125s Get:140 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-spp ppc64el 1.16.0-2 [329 kB]
126s Preconfiguring packages ...
126s Fetched 201 MB in 10s (20.1 MB/s)
126s dpkg: libpsl5:ppc64el: dependency problems, but removing anyway as you requested:
126s  wget depends on libpsl5 (>= 0.16.0).
126s  libcurl4:ppc64el depends on libpsl5 (>= 0.16.0).
126s  libcurl3-gnutls:ppc64el depends on libpsl5 (>= 0.16.0).
126s 
126s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 20%
(Reading database ... 25%
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(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70097 files and directories currently installed.)
126s Removing libpsl5:ppc64el (0.21.2-1build1) ...
126s Selecting previously unselected package libpsl5t64:ppc64el.
126s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70092 files and directories currently installed.)
126s Preparing to unpack .../libpsl5t64_0.21.2-1.1_ppc64el.deb ...
126s Unpacking libpsl5t64:ppc64el (0.21.2-1.1) ...
126s Preparing to unpack .../curl_8.5.0-2ubuntu7_ppc64el.deb ...
126s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
126s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70098 files and directories currently installed.)
126s Removing libcurl4:ppc64el (8.5.0-2ubuntu2) ...
126s Selecting previously unselected package libcurl4t64:ppc64el.
126s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70093 files and directories currently installed.)
126s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_ppc64el.deb ...
126s Unpacking libcurl4t64:ppc64el (8.5.0-2ubuntu7) ...
126s Selecting previously unselected package libc-dev-bin.
126s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_ppc64el.deb ...
126s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
126s Selecting previously unselected package linux-libc-dev:ppc64el.
126s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_ppc64el.deb ...
126s Unpacking linux-libc-dev:ppc64el (6.8.0-11.11) ...
126s Selecting previously unselected package libcrypt-dev:ppc64el.
126s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ...
126s Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) ...
126s Selecting previously unselected package libtirpc-dev:ppc64el.
126s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_ppc64el.deb ...
126s Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1build1) ...
126s Selecting previously unselected package libnsl-dev:ppc64el.
126s Preparing to unpack .../005-libnsl-dev_1.3.0-3_ppc64el.deb ...
126s Unpacking libnsl-dev:ppc64el (1.3.0-3) ...
126s Selecting previously unselected package rpcsvc-proto.
126s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ...
126s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
126s Selecting previously unselected package libc6-dev:ppc64el.
126s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_ppc64el.deb ...
126s Unpacking libc6-dev:ppc64el (2.39-0ubuntu2) ...
127s Selecting previously unselected package libisl23:ppc64el.
127s Preparing to unpack .../008-libisl23_0.26-3_ppc64el.deb ...
127s Unpacking libisl23:ppc64el (0.26-3) ...
127s Selecting previously unselected package libmpc3:ppc64el.
127s Preparing to unpack .../009-libmpc3_1.3.1-1_ppc64el.deb ...
127s Unpacking libmpc3:ppc64el (1.3.1-1) ...
127s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu.
127s Preparing to unpack .../010-cpp-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ...
127s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
127s Selecting previously unselected package cpp-13.
127s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_ppc64el.deb ...
127s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
127s Selecting previously unselected package cpp-powerpc64le-linux-gnu.
127s Preparing to unpack .../012-cpp-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
127s Unpacking cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
127s Selecting previously unselected package cpp.
127s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
127s Unpacking cpp (4:13.2.0-7ubuntu1) ...
127s Selecting previously unselected package libcc1-0:ppc64el.
127s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_ppc64el.deb ...
127s Unpacking libcc1-0:ppc64el (14-20240303-1ubuntu1) ...
127s Selecting previously unselected package libgomp1:ppc64el.
127s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ...
127s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ...
127s Selecting previously unselected package libitm1:ppc64el.
127s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_ppc64el.deb ...
127s Unpacking libitm1:ppc64el (14-20240303-1ubuntu1) ...
127s Selecting previously unselected package libatomic1:ppc64el.
127s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_ppc64el.deb ...
127s Unpacking libatomic1:ppc64el (14-20240303-1ubuntu1) ...
127s Selecting previously unselected package libasan8:ppc64el.
127s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_ppc64el.deb ...
127s Unpacking libasan8:ppc64el (14-20240303-1ubuntu1) ...
127s Selecting previously unselected package liblsan0:ppc64el.
127s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_ppc64el.deb ...
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127s Selecting previously unselected package libtsan2:ppc64el.
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127s Unpacking libtsan2:ppc64el (14-20240303-1ubuntu1) ...
127s Selecting previously unselected package libubsan1:ppc64el.
127s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_ppc64el.deb ...
127s Unpacking libubsan1:ppc64el (14-20240303-1ubuntu1) ...
127s Selecting previously unselected package libquadmath0:ppc64el.
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127s Unpacking libquadmath0:ppc64el (14-20240303-1ubuntu1) ...
127s Selecting previously unselected package libgcc-13-dev:ppc64el.
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127s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu.
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127s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
128s Selecting previously unselected package gcc-13.
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128s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
128s Selecting previously unselected package gcc-powerpc64le-linux-gnu.
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128s Unpacking gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
128s Selecting previously unselected package gcc.
128s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
128s Unpacking gcc (4:13.2.0-7ubuntu1) ...
128s Selecting previously unselected package libstdc++-13-dev:ppc64el.
128s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_ppc64el.deb ...
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128s Selecting previously unselected package g++-13-powerpc64le-linux-gnu.
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128s Selecting previously unselected package g++-13.
128s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_ppc64el.deb ...
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128s Selecting previously unselected package g++-powerpc64le-linux-gnu.
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128s Selecting previously unselected package g++.
128s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
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128s Selecting previously unselected package build-essential.
128s Preparing to unpack .../033-build-essential_12.10ubuntu1_ppc64el.deb ...
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128s Selecting previously unselected package dctrl-tools.
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128s Selecting previously unselected package fonts-dejavu-mono.
128s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
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128s Selecting previously unselected package fonts-dejavu-core.
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128s Selecting previously unselected package fontconfig-config.
128s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ...
129s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
129s Selecting previously unselected package libfontconfig1:ppc64el.
129s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ...
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129s Selecting previously unselected package fontconfig.
129s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_ppc64el.deb ...
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129s Selecting previously unselected package libgfortran5:ppc64el.
129s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ...
129s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
129s Selecting previously unselected package libgfortran-13-dev:ppc64el.
129s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_ppc64el.deb ...
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129s Selecting previously unselected package gfortran-13-powerpc64le-linux-gnu.
129s Preparing to unpack .../042-gfortran-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ...
129s Unpacking gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
129s Selecting previously unselected package gfortran-13.
129s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_ppc64el.deb ...
129s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
129s Selecting previously unselected package gfortran-powerpc64le-linux-gnu.
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129s Unpacking gfortran-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
129s Selecting previously unselected package gfortran.
129s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
129s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
129s Selecting previously unselected package icu-devtools.
129s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_ppc64el.deb ...
129s Unpacking icu-devtools (74.2-1ubuntu1) ...
129s Selecting previously unselected package libblas3:ppc64el.
129s Preparing to unpack .../047-libblas3_3.12.0-3_ppc64el.deb ...
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129s Selecting previously unselected package libblas-dev:ppc64el.
129s Preparing to unpack .../048-libblas-dev_3.12.0-3_ppc64el.deb ...
129s Unpacking libblas-dev:ppc64el (3.12.0-3) ...
129s Selecting previously unselected package libboost1.83-dev:ppc64el.
129s Preparing to unpack .../049-libboost1.83-dev_1.83.0-2ubuntu1_ppc64el.deb ...
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132s Selecting previously unselected package libboost-dev:ppc64el.
132s Preparing to unpack .../050-libboost-dev_1.83.0.1ubuntu2_ppc64el.deb ...
132s Unpacking libboost-dev:ppc64el (1.83.0.1ubuntu2) ...
132s Selecting previously unselected package libbz2-dev:ppc64el.
132s Preparing to unpack .../051-libbz2-dev_1.0.8-5ubuntu1_ppc64el.deb ...
132s Unpacking libbz2-dev:ppc64el (1.0.8-5ubuntu1) ...
132s Selecting previously unselected package libpixman-1-0:ppc64el.
132s Preparing to unpack .../052-libpixman-1-0_0.42.2-1_ppc64el.deb ...
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132s Selecting previously unselected package libxcb-render0:ppc64el.
132s Preparing to unpack .../053-libxcb-render0_1.15-1_ppc64el.deb ...
132s Unpacking libxcb-render0:ppc64el (1.15-1) ...
132s Selecting previously unselected package libxcb-shm0:ppc64el.
132s Preparing to unpack .../054-libxcb-shm0_1.15-1_ppc64el.deb ...
132s Unpacking libxcb-shm0:ppc64el (1.15-1) ...
132s Selecting previously unselected package libxrender1:ppc64el.
132s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ...
132s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ...
132s Selecting previously unselected package libcairo2:ppc64el.
132s Preparing to unpack .../056-libcairo2_1.18.0-1_ppc64el.deb ...
132s Unpacking libcairo2:ppc64el (1.18.0-1) ...
132s Selecting previously unselected package libdatrie1:ppc64el.
132s Preparing to unpack .../057-libdatrie1_0.2.13-3_ppc64el.deb ...
132s Unpacking libdatrie1:ppc64el (0.2.13-3) ...
132s Selecting previously unselected package libdeflate0:ppc64el.
132s Preparing to unpack .../058-libdeflate0_1.19-1_ppc64el.deb ...
132s Unpacking libdeflate0:ppc64el (1.19-1) ...
132s Selecting previously unselected package libgraphite2-3:ppc64el.
132s Preparing to unpack .../059-libgraphite2-3_1.3.14-2_ppc64el.deb ...
132s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ...
132s Selecting previously unselected package libharfbuzz0b:ppc64el.
132s Preparing to unpack .../060-libharfbuzz0b_8.3.0-2_ppc64el.deb ...
132s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ...
132s Selecting previously unselected package x11-common.
132s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu2_all.deb ...
132s Unpacking x11-common (1:7.7+23ubuntu2) ...
132s Selecting previously unselected package libice6:ppc64el.
132s Preparing to unpack .../062-libice6_2%3a1.0.10-1build2_ppc64el.deb ...
132s Unpacking libice6:ppc64el (2:1.0.10-1build2) ...
132s Selecting previously unselected package libicu-dev:ppc64el.
132s Preparing to unpack .../063-libicu-dev_74.2-1ubuntu1_ppc64el.deb ...
132s Unpacking libicu-dev:ppc64el (74.2-1ubuntu1) ...
133s Selecting previously unselected package libjpeg-turbo8:ppc64el.
133s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ...
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133s Selecting previously unselected package libjpeg-turbo8-dev:ppc64el.
133s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-2ubuntu1_ppc64el.deb ...
133s Unpacking libjpeg-turbo8-dev:ppc64el (2.1.5-2ubuntu1) ...
133s Selecting previously unselected package libjpeg8:ppc64el.
133s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
133s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
133s Selecting previously unselected package libjpeg8-dev:ppc64el.
133s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_ppc64el.deb ...
133s Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu11) ...
133s Selecting previously unselected package libjpeg-dev:ppc64el.
133s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_ppc64el.deb ...
133s Unpacking libjpeg-dev:ppc64el (8c-2ubuntu11) ...
133s Selecting previously unselected package liblapack3:ppc64el.
133s Preparing to unpack .../069-liblapack3_3.12.0-3_ppc64el.deb ...
133s Unpacking liblapack3:ppc64el (3.12.0-3) ...
133s Selecting previously unselected package liblapack-dev:ppc64el.
133s Preparing to unpack .../070-liblapack-dev_3.12.0-3_ppc64el.deb ...
133s Unpacking liblapack-dev:ppc64el (3.12.0-3) ...
133s Selecting previously unselected package liblerc4:ppc64el.
133s Preparing to unpack .../071-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ...
133s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
133s Selecting previously unselected package libncurses-dev:ppc64el.
133s Preparing to unpack .../072-libncurses-dev_6.4+20240113-1ubuntu1_ppc64el.deb ...
133s Unpacking libncurses-dev:ppc64el (6.4+20240113-1ubuntu1) ...
133s Selecting previously unselected package libthai-data.
133s Preparing to unpack .../073-libthai-data_0.1.29-2_all.deb ...
133s Unpacking libthai-data (0.1.29-2) ...
133s Selecting previously unselected package libthai0:ppc64el.
133s Preparing to unpack .../074-libthai0_0.1.29-2_ppc64el.deb ...
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133s Selecting previously unselected package libpango-1.0-0:ppc64el.
133s Preparing to unpack .../075-libpango-1.0-0_1.51.0+ds-4_ppc64el.deb ...
133s Unpacking libpango-1.0-0:ppc64el (1.51.0+ds-4) ...
133s Selecting previously unselected package libpangoft2-1.0-0:ppc64el.
133s Preparing to unpack .../076-libpangoft2-1.0-0_1.51.0+ds-4_ppc64el.deb ...
133s Unpacking libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ...
133s Selecting previously unselected package libpangocairo-1.0-0:ppc64el.
133s Preparing to unpack .../077-libpangocairo-1.0-0_1.51.0+ds-4_ppc64el.deb ...
133s Unpacking libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ...
133s Selecting previously unselected package libpaper1:ppc64el.
133s Preparing to unpack .../078-libpaper1_1.1.29_ppc64el.deb ...
133s Unpacking libpaper1:ppc64el (1.1.29) ...
133s Selecting previously unselected package libpaper-utils.
133s Preparing to unpack .../079-libpaper-utils_1.1.29_ppc64el.deb ...
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133s Selecting previously unselected package libpcre2-16-0:ppc64el.
133s Preparing to unpack .../080-libpcre2-16-0_10.42-4ubuntu1_ppc64el.deb ...
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133s Selecting previously unselected package libpcre2-32-0:ppc64el.
133s Preparing to unpack .../081-libpcre2-32-0_10.42-4ubuntu1_ppc64el.deb ...
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133s Selecting previously unselected package libpcre2-posix3:ppc64el.
133s Preparing to unpack .../082-libpcre2-posix3_10.42-4ubuntu1_ppc64el.deb ...
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133s Selecting previously unselected package libpcre2-dev:ppc64el.
133s Preparing to unpack .../083-libpcre2-dev_10.42-4ubuntu1_ppc64el.deb ...
133s Unpacking libpcre2-dev:ppc64el (10.42-4ubuntu1) ...
133s Selecting previously unselected package libpkgconf3:ppc64el.
133s Preparing to unpack .../084-libpkgconf3_1.8.1-2_ppc64el.deb ...
133s Unpacking libpkgconf3:ppc64el (1.8.1-2) ...
133s Selecting previously unselected package zlib1g-dev:ppc64el.
133s Preparing to unpack .../085-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_ppc64el.deb ...
133s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ...
133s Selecting previously unselected package libpng-dev:ppc64el.
133s Preparing to unpack .../086-libpng-dev_1.6.43-1_ppc64el.deb ...
133s Unpacking libpng-dev:ppc64el (1.6.43-1) ...
133s Selecting previously unselected package libreadline-dev:ppc64el.
133s Preparing to unpack .../087-libreadline-dev_8.2-3_ppc64el.deb ...
133s Unpacking libreadline-dev:ppc64el (8.2-3) ...
133s Selecting previously unselected package libsharpyuv0:ppc64el.
133s Preparing to unpack .../088-libsharpyuv0_1.3.2-0.4_ppc64el.deb ...
133s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ...
133s Selecting previously unselected package libsm6:ppc64el.
133s Preparing to unpack .../089-libsm6_2%3a1.2.3-1build2_ppc64el.deb ...
133s Unpacking libsm6:ppc64el (2:1.2.3-1build2) ...
133s Selecting previously unselected package libtcl8.6:ppc64el.
133s Preparing to unpack .../090-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ...
133s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ...
133s Selecting previously unselected package libjbig0:ppc64el.
133s Preparing to unpack .../091-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ...
133s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ...
133s Selecting previously unselected package libwebp7:ppc64el.
133s Preparing to unpack .../092-libwebp7_1.3.2-0.4_ppc64el.deb ...
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134s Selecting previously unselected package libtiff6:ppc64el.
134s Preparing to unpack .../093-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ...
134s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
134s Selecting previously unselected package libxft2:ppc64el.
134s Preparing to unpack .../094-libxft2_2.3.6-1_ppc64el.deb ...
134s Unpacking libxft2:ppc64el (2.3.6-1) ...
134s Selecting previously unselected package libxss1:ppc64el.
134s Preparing to unpack .../095-libxss1_1%3a1.2.3-1build2_ppc64el.deb ...
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134s Selecting previously unselected package libtk8.6:ppc64el.
134s Preparing to unpack .../096-libtk8.6_8.6.13-2_ppc64el.deb ...
134s Unpacking libtk8.6:ppc64el (8.6.13-2) ...
134s Selecting previously unselected package libxt6:ppc64el.
134s Preparing to unpack .../097-libxt6_1%3a1.2.1-1.1_ppc64el.deb ...
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134s Selecting previously unselected package zip.
134s Preparing to unpack .../098-zip_3.0-13_ppc64el.deb ...
134s Unpacking zip (3.0-13) ...
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134s Preparing to unpack .../099-unzip_6.0-28ubuntu3_ppc64el.deb ...
134s Unpacking unzip (6.0-28ubuntu3) ...
134s Selecting previously unselected package xdg-utils.
134s Preparing to unpack .../100-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
134s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
134s Selecting previously unselected package r-base-core.
134s Preparing to unpack .../101-r-base-core_4.3.2-1build1_ppc64el.deb ...
134s Unpacking r-base-core (4.3.2-1build1) ...
134s Selecting previously unselected package r-cran-littler.
134s Preparing to unpack .../102-r-cran-littler_0.3.19-1_ppc64el.deb ...
134s Unpacking r-cran-littler (0.3.19-1) ...
134s Selecting previously unselected package littler.
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134s Unpacking littler (0.3.19-1) ...
134s Selecting previously unselected package pkgconf-bin.
134s Preparing to unpack .../104-pkgconf-bin_1.8.1-2_ppc64el.deb ...
134s Unpacking pkgconf-bin (1.8.1-2) ...
134s Selecting previously unselected package pkgconf:ppc64el.
134s Preparing to unpack .../105-pkgconf_1.8.1-2_ppc64el.deb ...
134s Unpacking pkgconf:ppc64el (1.8.1-2) ...
134s Selecting previously unselected package pkg-config:ppc64el.
134s Preparing to unpack .../106-pkg-config_1.8.1-2_ppc64el.deb ...
134s Unpacking pkg-config:ppc64el (1.8.1-2) ...
134s Selecting previously unselected package liblzma-dev:ppc64el.
134s Preparing to unpack .../107-liblzma-dev_5.4.5-0.3_ppc64el.deb ...
134s Unpacking liblzma-dev:ppc64el (5.4.5-0.3) ...
134s Selecting previously unselected package r-base-dev.
134s Preparing to unpack .../108-r-base-dev_4.3.2-1build1_all.deb ...
134s Unpacking r-base-dev (4.3.2-1build1) ...
134s Selecting previously unselected package pkg-r-autopkgtest.
134s Preparing to unpack .../109-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
134s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
134s Selecting previously unselected package r-bioc-biocgenerics.
134s Preparing to unpack .../110-r-bioc-biocgenerics_0.48.1-2_all.deb ...
134s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
134s Selecting previously unselected package r-cran-formatr.
134s Preparing to unpack .../111-r-cran-formatr_1.14-1_all.deb ...
134s Unpacking r-cran-formatr (1.14-1) ...
134s Selecting previously unselected package r-cran-lambda.r.
134s Preparing to unpack .../112-r-cran-lambda.r_1.2.4-2build1_all.deb ...
134s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
134s Selecting previously unselected package r-cran-futile.options.
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134s Unpacking r-cran-futile.options (1.0.1-3build1) ...
134s Selecting previously unselected package r-cran-futile.logger.
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134s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
134s Selecting previously unselected package r-cran-snow.
134s Preparing to unpack .../115-r-cran-snow_1%3a0.4.4-2_all.deb ...
134s Unpacking r-cran-snow (1:0.4.4-2) ...
134s Selecting previously unselected package r-cran-codetools.
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134s Selecting previously unselected package r-cran-bh.
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134s Unpacking r-cran-bh (1.84.0-1) ...
134s Selecting previously unselected package r-cran-cpp11.
134s Preparing to unpack .../118-r-cran-cpp11_0.4.7-1_all.deb ...
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135s Selecting previously unselected package r-bioc-biocparallel.
135s Preparing to unpack .../119-r-bioc-biocparallel_1.36.0-1_ppc64el.deb ...
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135s Selecting previously unselected package r-bioc-s4vectors.
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135s Selecting previously unselected package r-bioc-xvector.
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135s Selecting previously unselected package r-bioc-genomeinfodbdata.
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135s Selecting previously unselected package r-bioc-rhtslib.
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135s Setting up libgraphite2-3:ppc64el (1.3.14-2) ...
135s Setting up libpixman-1-0:ppc64el (0.42.2-1) ...
135s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ...
135s Setting up libpaper1:ppc64el (1.1.29) ...
136s 
136s Creating config file /etc/papersize with new version
136s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
136s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ...
136s Setting up libdatrie1:ppc64el (0.2.13-3) ...
136s Setting up libxcb-render0:ppc64el (1.15-1) ...
136s Setting up unzip (6.0-28ubuntu3) ...
136s Setting up x11-common (1:7.7+23ubuntu2) ...
136s Setting up libpsl5t64:ppc64el (0.21.2-1.1) ...
136s Setting up libdeflate0:ppc64el (1.19-1) ...
136s Setting up linux-libc-dev:ppc64el (6.8.0-11.11) ...
136s Setting up libxcb-shm0:ppc64el (1.15-1) ...
136s Setting up libpaper-utils (1.1.29) ...
136s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ...
136s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ...
136s Setting up libpcre2-16-0:ppc64el (10.42-4ubuntu1) ...
136s Setting up zip (3.0-13) ...
136s Setting up libpcre2-32-0:ppc64el (10.42-4ubuntu1) ...
136s Setting up libblas3:ppc64el (3.12.0-3) ...
136s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
136s Setting up libtirpc-dev:ppc64el (1.3.4+ds-1build1) ...
136s Setting up libpkgconf3:ppc64el (1.8.1-2) ...
136s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
136s Setting up libquadmath0:ppc64el (14-20240303-1ubuntu1) ...
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136s Setting up libtcl8.6:ppc64el (8.6.13+dfsg-2) ...
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136s Setting up pkgconf-bin (1.8.1-2) ...
136s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
136s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
136s Setting up libwebp7:ppc64el (1.3.2-0.4) ...
136s Setting up liblzma-dev:ppc64el (5.4.5-0.3) ...
136s Setting up libubsan1:ppc64el (14-20240303-1ubuntu1) ...
136s Setting up libpcre2-posix3:ppc64el (10.42-4ubuntu1) ...
136s Setting up libnsl-dev:ppc64el (1.3.0-3) ...
136s Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ...
136s Setting up libasan8:ppc64el (14-20240303-1ubuntu1) ...
136s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ...
136s Setting up libthai-data (0.1.29-2) ...
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136s Setting up libtsan2:ppc64el (14-20240303-1ubuntu1) ...
136s Setting up libisl23:ppc64el (0.26-3) ...
136s Setting up libc-dev-bin (2.39-0ubuntu2) ...
136s Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
136s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
136s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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136s Setting up liblsan0:ppc64el (14-20240303-1ubuntu1) ...
136s Setting up libblas-dev:ppc64el (3.12.0-3) ...
136s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode
136s Setting up dctrl-tools (2.24-3build2) ...
136s Setting up libitm1:ppc64el (14-20240303-1ubuntu1) ...
136s Setting up cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
136s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
136s Setting up libice6:ppc64el (2:1.0.10-1build2) ...
136s Setting up liblapack3:ppc64el (3.12.0-3) ...
136s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
136s Setting up cpp-13 (13.2.0-17ubuntu2) ...
136s Setting up libcurl4t64:ppc64el (8.5.0-2ubuntu7) ...
136s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
136s Setting up pkgconf:ppc64el (1.8.1-2) ...
136s Setting up libthai0:ppc64el (0.1.29-2) ...
136s Setting up liblapack-dev:ppc64el (3.12.0-3) ...
136s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode
136s Setting up pkg-config:ppc64el (1.8.1-2) ...
136s Setting up libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ...
136s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
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136s Setting up libc6-dev:ppc64el (2.39-0ubuntu2) ...
136s Setting up curl (8.5.0-2ubuntu7) ...
136s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
136s Setting up libgfortran-13-dev:ppc64el (13.2.0-17ubuntu2) ...
136s Setting up libsm6:ppc64el (2:1.2.3-1build2) ...
136s Setting up libicu-dev:ppc64el (74.2-1ubuntu1) ...
137s Setting up libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ...
137s Setting up libbz2-dev:ppc64el (1.0.8-5ubuntu1) ...
137s Setting up fontconfig (2.15.0-1ubuntu1) ...
139s Regenerating fonts cache... done.
139s Setting up libjpeg-turbo8-dev:ppc64el (2.1.5-2ubuntu1) ...
139s Setting up libxft2:ppc64el (2.3.6-1) ...
139s Setting up libboost1.83-dev:ppc64el (1.83.0-2ubuntu1) ...
139s Setting up libncurses-dev:ppc64el (6.4+20240113-1ubuntu1) ...
139s Setting up libpcre2-dev:ppc64el (10.42-4ubuntu1) ...
139s Setting up libtk8.6:ppc64el (8.6.13-2) ...
139s Setting up libpango-1.0-0:ppc64el (1.51.0+ds-4) ...
139s Setting up libreadline-dev:ppc64el (8.2-3) ...
139s Setting up libcairo2:ppc64el (1.18.0-1) ...
139s Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
139s Setting up gcc-13 (13.2.0-17ubuntu2) ...
139s Setting up libxt6:ppc64el (1:1.2.1-1.1) ...
139s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ...
139s Setting up libboost-dev:ppc64el (1.83.0.1ubuntu2) ...
139s Setting up libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ...
139s Setting up libjpeg8-dev:ppc64el (8c-2ubuntu11) ...
139s Setting up libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ...
139s Setting up gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
139s Setting up libpng-dev:ppc64el (1.6.43-1) ...
139s Setting up libjpeg-dev:ppc64el (8c-2ubuntu11) ...
139s Setting up g++-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
139s Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
139s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
139s Setting up r-base-core (4.3.2-1build1) ...
139s 
139s Creating config file /etc/R/Renviron with new version
139s Setting up r-cran-crayon (1.5.2-1) ...
139s Setting up r-cran-futile.options (1.0.1-3build1) ...
139s Setting up r-cran-formatr (1.14-1) ...
139s Setting up r-cran-pkgkitten (0.2.3-1) ...
139s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
139s Setting up g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
139s Setting up r-cran-littler (0.3.19-1) ...
139s Setting up r-cran-bh (1.84.0-1) ...
139s Setting up r-cran-rcpp (1.0.12-1) ...
139s Setting up r-cran-codetools (0.2-19-1) ...
139s Setting up g++-13 (13.2.0-17ubuntu2) ...
139s Setting up r-bioc-biocgenerics (0.48.1-2) ...
139s Setting up littler (0.3.19-1) ...
139s Setting up r-cran-lambda.r (1.2.4-2build1) ...
139s Setting up r-cran-snow (1:0.4.4-2) ...
139s Setting up r-cran-bitops (1.0-7-1) ...
139s Setting up gcc (4:13.2.0-7ubuntu1) ...
139s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
139s Setting up gfortran-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
139s Setting up r-cran-cpp11 (0.4.7-1) ...
139s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
139s Setting up r-cran-futile.logger (1.4.3-4build1) ...
139s Setting up g++ (4:13.2.0-7ubuntu1) ...
139s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
139s Setting up build-essential (12.10ubuntu1) ...
139s Setting up r-cran-catools (1.18.2-1) ...
139s Setting up r-bioc-iranges (2.36.0-1) ...
139s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
139s Setting up r-bioc-biocparallel (1.36.0-1) ...
139s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
139s Setting up gfortran (4:13.2.0-7ubuntu1) ...
139s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
139s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
139s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
139s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
139s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
139s Setting up r-bioc-xvector (0.42.0-1) ...
139s Setting up r-base-dev (4.3.2-1build1) ...
139s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
139s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
139s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ...
139s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
139s Setting up r-cran-spp (1.16.0-2) ...
139s Setting up autopkgtest-satdep (0) ...
139s Processing triggers for man-db (2.12.0-3) ...
140s Processing triggers for install-info (7.1-3) ...
141s Processing triggers for libc-bin (2.39-0ubuntu2) ...
146s (Reading database ... 95187 files and directories currently installed.)
146s Removing autopkgtest-satdep (0) ...
146s autopkgtest [21:53:46]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
146s autopkgtest [21:53:46]: test pkg-r-autopkgtest: [-----------------------
146s Test: Try to load the R library spp
146s 
146s R version 4.3.2 (2023-10-31) -- "Eye Holes"
146s Copyright (C) 2023 The R Foundation for Statistical Computing
146s Platform: powerpc64le-unknown-linux-gnu (64-bit)
146s 
146s R is free software and comes with ABSOLUTELY NO WARRANTY.
146s You are welcome to redistribute it under certain conditions.
146s Type 'license()' or 'licence()' for distribution details.
146s 
146s R is a collaborative project with many contributors.
146s Type 'contributors()' for more information and
146s 'citation()' on how to cite R or R packages in publications.
146s 
146s Type 'demo()' for some demos, 'help()' for on-line help, or
146s 'help.start()' for an HTML browser interface to help.
146s Type 'q()' to quit R.
146s 
147s > library('spp')
147s Loading required package: Rcpp
147s > 
147s > 
147s Other tests are currently unsupported!
147s They will be progressively added.
147s autopkgtest [21:53:47]: test pkg-r-autopkgtest: -----------------------]
148s autopkgtest [21:53:48]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
148s pkg-r-autopkgtest    PASS
148s autopkgtest [21:53:48]: @@@@@@@@@@@@@@@@@@@@ summary
148s pkg-r-autopkgtest    PASS
159s Creating nova instance adt-noble-ppc64el-r-cran-spp-20240317-215120-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240316.img (UUID 5f323cde-6357-475d-9beb-0cc93b49185c)...