0s autopkgtest [17:21:19]: starting date and time: 2024-03-14 17:21:19+0000 0s autopkgtest [17:21:19]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:21:19]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.m0vtahgr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-sf,src:cfitsio,src:gdal,src:geos,src:libkml,src:libpng1.6,src:netcdf,src:openssl,src:proj,src:spatialite,src:wp2latex,src:xerces-c,src:zlib --apt-upgrade r-cran-gstat --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-sf/1.0-15+dfsg-1build1 cfitsio/4.3.1-1.1 gdal/3.8.4+dfsg-3build1 geos/3.12.1-3 libkml/1.3.0-12 libpng1.6/1.6.43-3 netcdf/1:4.9.2-5ubuntu1 openssl/3.0.13-0ubuntu1 proj/9.4.0-1 spatialite/5.1.0-3 wp2latex/4.4~ds-1build1 xerces-c/3.2.4+debian-1.2 zlib/1:1.3.dfsg-3.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-ppc64el-8.secgroup --name adt-noble-ppc64el-r-cran-gstat-20240314-172119-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 130s autopkgtest [17:23:29]: testbed dpkg architecture: ppc64el 130s autopkgtest [17:23:29]: testbed apt version: 2.7.12 130s autopkgtest [17:23:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 131s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 131s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2966 kB] 132s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [47.8 kB] 132s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [456 kB] 132s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 132s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [605 kB] 132s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 132s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 132s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 132s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3321 kB] 132s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 132s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [42.2 kB] 132s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 135s Fetched 7573 kB in 2s (3440 kB/s) 135s Reading package lists... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Calculating upgrade... 138s The following packages will be REMOVED: 138s libssl3 138s The following NEW packages will be installed: 138s libssl3t64 138s The following packages will be upgraded: 138s dosfstools openssl zlib1g 139s 3 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 139s Need to get 3369 kB of archives. 139s After this operation, 3072 B disk space will be freed. 139s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu1 [1028 kB] 140s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu1 [2168 kB] 142s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3.1ubuntu1 [72.8 kB] 142s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el dosfstools ppc64el 4.2-1.1 [101 kB] 143s Fetched 3369 kB in 4s (869 kB/s) 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70096 files and directories currently installed.) 143s Preparing to unpack .../openssl_3.0.13-0ubuntu1_ppc64el.deb ... 143s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 143s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 143s wget depends on libssl3 (>= 3.0.0). 143s tnftp depends on libssl3 (>= 3.0.0). 143s tcpdump depends on libssl3 (>= 3.0.0). 143s systemd-resolved depends on libssl3 (>= 3.0.0). 143s systemd depends on libssl3 (>= 3.0.0). 143s sudo depends on libssl3 (>= 3.0.0). 143s rsync depends on libssl3 (>= 3.0.0). 143s python3-cryptography depends on libssl3 (>= 3.0.0). 143s openssh-server depends on libssl3 (>= 3.0.10). 143s openssh-client depends on libssl3 (>= 3.0.10). 143s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 143s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 143s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 143s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 143s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 143s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 143s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 143s libnvme1 depends on libssl3 (>= 3.0.0). 143s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 143s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 143s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 143s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 143s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 143s kmod depends on libssl3 (>= 3.0.0). 143s dhcpcd-base depends on libssl3 (>= 3.0.0). 143s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 143s 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70096 files and directories currently installed.) 143s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 143s Selecting previously unselected package libssl3t64:ppc64el. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70085 files and directories currently installed.) 143s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_ppc64el.deb ... 143s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu1) ... 143s Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu1_ppc64el.deb ... 143s Unpacking zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 143s Setting up zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu1) ... 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70098 files and directories currently installed.) 143s Preparing to unpack .../dosfstools_4.2-1.1_ppc64el.deb ... 143s Unpacking dosfstools (4.2-1.1) over (4.2-1build3) ... 143s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu1) ... 143s Setting up dosfstools (4.2-1.1) ... 143s Setting up openssl (3.0.13-0ubuntu1) ... 143s Processing triggers for man-db (2.12.0-3) ... 144s Processing triggers for libc-bin (2.39-0ubuntu2) ... 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 145s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 145s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 145s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 145s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 147s Reading package lists... 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Calculating upgrade... 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s autopkgtest [17:23:49]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 150s autopkgtest [17:23:49]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-gstat 153s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-gstat 2.1-1-2 (dsc) [2280 B] 153s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-gstat 2.1-1-2 (tar) [2298 kB] 153s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-gstat 2.1-1-2 (diff) [3644 B] 153s gpgv: Signature made Sat Aug 19 19:47:01 2023 UTC 153s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 153s gpgv: issuer "tille@debian.org" 153s gpgv: Can't check signature: No public key 153s dpkg-source: warning: cannot verify inline signature for ./r-cran-gstat_2.1-1-2.dsc: no acceptable signature found 154s autopkgtest [17:23:53]: testing package r-cran-gstat version 2.1-1-2 154s autopkgtest [17:23:53]: build not needed 155s autopkgtest [17:23:54]: test run-unit-test: preparing testbed 156s Reading package lists... 157s Building dependency tree... 157s Reading state information... 157s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 157s The following additional packages will be installed: 157s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gdal-data 157s gdal-plugins libaec0 libarmadillo12 libarpack2 libblas3 libblosc1 libcairo2 157s libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 157s libfreexl1 libfyba0 libgdal34t64 libgeos-c1t64 libgeos3.12.1t64 libgeotiff5 157s libgfortran5 libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt 157s libhdf5-103-1t64 libhdf5-hl-100t64 libheif-plugin-dav1d 157s libheif-plugin-libde265 libheif1 libice6 libjbig0 libjpeg-turbo8 libjpeg8 157s libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack3 liblcms2-2 liblerc4 157s libltdl7 libminizip1t64 libmysqlclient21 libnetcdf19t64 libodbc2 157s libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 157s libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 157s libpoppler134 libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 157s libsnappy1v5 libspatialite8t64 libsuperlu6 libsz2 libtcl8.6 libthai-data 157s libthai0 libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 157s libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 157s libxss1 libxt6 littler mysql-common proj-data r-base-core r-cran-abind 157s r-cran-class r-cran-classint r-cran-codetools r-cran-dbi r-cran-digest 157s r-cran-dotcall64 r-cran-e1071 r-cran-fields r-cran-fnn r-cran-future 157s r-cran-future.apply r-cran-globals r-cran-gstat r-cran-intervals 157s r-cran-kernsmooth r-cran-lattice r-cran-listenv r-cran-littler 157s r-cran-magrittr r-cran-mapdata r-cran-maps r-cran-mass r-cran-parallelly 157s r-cran-pkgkitten r-cran-proxy r-cran-raster r-cran-rcpp r-cran-rlang 157s r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp r-cran-spacetime r-cran-spam 157s r-cran-stars r-cran-terra r-cran-units r-cran-viridislite r-cran-wk 157s r-cran-xts r-cran-zoo unixodbc-common unzip x11-common xdg-utils zip 157s Suggested packages: 157s geotiff-bin gdal-bin libgeotiff-epsg libhdf4-doc libhdf4-alt-dev hdf4-tools 157s libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc 157s libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e 157s libheif-plugin-svtenc liblcms2-utils odbc-postgresql tdsodbc ogdi-bin 157s proj-bin tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 157s r-cran-rmysql r-cran-mvtnorm r-cran-getopt r-cran-covr r-cran-knitr 157s r-cran-rmarkdown r-cran-mapproj r-cran-inline r-cran-nanoarrow 157s Recommended packages: 157s proj-bin libheif-plugin-aomenc libheif-plugin-x265 poppler-data 157s r-recommended r-base-dev r-doc-html r-cran-spdata r-cran-knitr 157s r-cran-rmarkdown r-cran-tinytest r-cran-rhpcblasctl r-cran-rcolorbrewer 157s r-cran-roxygen2 r-cran-testthat r-cran-r.rsp r-cran-markdown r-cran-r.utils 157s r-cran-crayon r-cran-cba r-cran-ncdf4 r-cran-igraph r-cran-exactextractr 157s r-cran-cli r-cran-covr r-cran-fs r-cran-glue r-cran-pillar r-cran-tibble 157s r-cran-usethis r-cran-vctrs r-cran-withr r-cran-bit64 r-cran-blob 157s r-cran-dplyr r-cran-ggplot2 r-cran-lwgeom r-cran-matrix r-cran-pbapply 157s r-cran-rpostgresql r-cran-rsqlite r-cran-spatstat r-cran-spatstat.geom 157s r-cran-spatstat.random r-cran-spatstat.linnet r-cran-spatstat.utils 157s r-cran-tidyr r-cran-tidyselect r-cran-ncmeta r-cran-deldir r-cran-foreign 157s r-cran-plm r-cran-googlevis r-cran-isocodes r-cran-truncdist r-cran-cairo 157s r-cran-pcict r-cran-rnetcdf r-cran-clue r-cran-cubelyr r-cran-ggforce 157s r-cran-ggthemes r-cran-httr r-cran-jsonlite r-cran-ncdfgeom 157s r-cran-randomforest r-cran-viridis r-cran-xml r-cran-htmlwidgets r-cran-xml2 157s r-cran-vdiffr r-cran-readr r-cran-timeseries r-cran-timedate r-cran-tseries 157s r-cran-chron libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 157s x11-utils x11-xserver-utils 157s The following packages will be REMOVED: 157s libpng16-16 157s The following NEW packages will be installed: 157s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 157s fonts-dejavu-mono gdal-data gdal-plugins libaec0 libarmadillo12 libarpack2 157s libblas3 libblosc1 libcairo2 libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 157s libdeflate0 libfontconfig1 libfreexl1 libfyba0 libgdal34t64 libgeos-c1t64 157s libgeos3.12.1t64 libgeotiff5 libgfortran5 libgif7 libgomp1 libgraphite2-3 157s libharfbuzz0b libhdf4-0-alt libhdf5-103-1t64 libhdf5-hl-100t64 157s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libjbig0 157s libjpeg-turbo8 libjpeg8 libkmlbase1t64 libkmldom1t64 libkmlengine1t64 157s liblapack3 liblcms2-2 liblerc4 libltdl7 libminizip1t64 libmysqlclient21 157s libnetcdf19t64 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 157s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 157s libpng16-16t64 libpoppler134 libpq5 libproj25 libqhull-r8.0 librttopo1 157s libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libsuperlu6 libsz2 157s libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libudunits2-0 157s libudunits2-data liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 157s libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6 littler mysql-common 157s proj-data r-base-core r-cran-abind r-cran-class r-cran-classint 157s r-cran-codetools r-cran-dbi r-cran-digest r-cran-dotcall64 r-cran-e1071 158s r-cran-fields r-cran-fnn r-cran-future r-cran-future.apply r-cran-globals 158s r-cran-gstat r-cran-intervals r-cran-kernsmooth r-cran-lattice 158s r-cran-listenv r-cran-littler r-cran-magrittr r-cran-mapdata r-cran-maps 158s r-cran-mass r-cran-parallelly r-cran-pkgkitten r-cran-proxy r-cran-raster 158s r-cran-rcpp r-cran-rlang r-cran-s2 r-cran-sf r-cran-sftime r-cran-sp 158s r-cran-spacetime r-cran-spam r-cran-stars r-cran-terra r-cran-units 158s r-cran-viridislite r-cran-wk r-cran-xts r-cran-zoo unixodbc-common unzip 158s x11-common xdg-utils zip 158s 0 upgraded, 139 newly installed, 1 to remove and 0 not upgraded. 158s Need to get 145 MB/145 MB of archives. 158s After this operation, 326 MB of additional disk space will be used. 158s Get:1 /tmp/autopkgtest.0hAhn3/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [748 B] 158s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpng16-16t64 ppc64el 1.6.43-3 [242 kB] 158s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 158s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 159s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 159s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 159s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1ubuntu1 [192 kB] 159s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el gdal-data all 3.8.4+dfsg-3ubuntu1 [261 kB] 159s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el gdal-plugins ppc64el 3.8.4+dfsg-3ubuntu1 [24.7 kB] 159s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el libaec0 ppc64el 1.1.2-1 [29.9 kB] 159s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 159s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 159s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 160s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el libarpack2 ppc64el 3.9.1-1 [106 kB] 160s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsuperlu6 ppc64el 6.0.1+dfsg1-1 [234 kB] 160s Get:16 http://ftpmaster.internal/ubuntu noble/universe ppc64el libarmadillo12 ppc64el 1:12.6.7+dfsg-1 [139 kB] 160s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libsnappy1v5 ppc64el 1.1.10-1 [30.5 kB] 160s Get:18 http://ftpmaster.internal/ubuntu noble/universe ppc64el libblosc1 ppc64el 1.21.5+ds-1 [37.7 kB] 160s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB] 160s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] 160s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] 160s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 160s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB] 160s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libcfitsio10t64 ppc64el 4.3.1-1.1 [712 kB] 160s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3 [25.1 kB] 160s Get:26 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdav1d7 ppc64el 1.4.0-1 [461 kB] 160s Get:27 http://ftpmaster.internal/ubuntu noble/universe ppc64el libde265-0 ppc64el 1.0.15-1 [329 kB] 160s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 160s Get:29 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfyba0 ppc64el 4.1.1-8 [143 kB] 160s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libminizip1t64 ppc64el 1:1.3.dfsg-3.1ubuntu1 [25.4 kB] 160s Get:31 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfreexl1 ppc64el 2.0.0-1 [52.6 kB] 160s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgeos3.12.1t64 ppc64el 3.12.1-3 [1010 kB] 161s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgeos-c1t64 ppc64el 3.12.1-3 [107 kB] 161s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el proj-data all 9.4.0-1 [7885 kB] 161s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 161s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 161s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 161s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 161s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 161s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 161s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 161s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libproj25 ppc64el 9.4.0-1 [1485 kB] 161s Get:43 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgeotiff5 ppc64el 1.7.1-5 [64.6 kB] 161s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libgif7 ppc64el 5.2.1-2.5 [39.6 kB] 161s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhdf4-0-alt ppc64el 4.2.16-3 [329 kB] 161s Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsz2 ppc64el 1.1.2-1 [5472 B] 161s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-3.1ubuntu2 [1395 kB] 162s Get:48 http://ftpmaster.internal/ubuntu noble/universe ppc64el libheif-plugin-dav1d ppc64el 1.17.6-1ubuntu1 [11.3 kB] 162s Get:49 http://ftpmaster.internal/ubuntu noble/universe ppc64el libheif-plugin-libde265 ppc64el 1.17.6-1ubuntu1 [9566 B] 162s Get:50 http://ftpmaster.internal/ubuntu noble/universe ppc64el libheif1 ppc64el 1.17.6-1ubuntu1 [381 kB] 162s Get:51 http://ftpmaster.internal/ubuntu noble/universe ppc64el liburiparser1 ppc64el 0.9.7+dfsg-2 [52.4 kB] 162s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libkmlbase1t64 ppc64el 1.3.0-12 [59.4 kB] 162s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libkmldom1t64 ppc64el 1.3.0-12 [168 kB] 162s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libkmlengine1t64 ppc64el 1.3.0-12 [77.9 kB] 162s Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el mysql-common all 5.8+1.1.0 [6626 B] 162s Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libmysqlclient21 ppc64el 8.0.36-1 [1319 kB] 162s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-3.1ubuntu2 [70.9 kB] 162s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libnetcdf19t64 ppc64el 1:4.9.2-5ubuntu2 [600 kB] 162s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libltdl7 ppc64el 2.4.7-7 [48.0 kB] 162s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libodbc2 ppc64el 2.3.12-1 [187 kB] 162s Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el unixodbc-common all 2.3.12-1 [8524 B] 162s Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libodbcinst2 ppc64el 2.3.12-1 [36.9 kB] 162s Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el libogdi4.1 ppc64el 4.1.1+ds-1 [249 kB] 162s Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB] 162s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] 162s Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libpoppler134 ppc64el 24.02.0-1ubuntu2 [1341 kB] 162s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libpq5 ppc64el 16.2-1 [170 kB] 162s Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6 [220 kB] 162s Get:69 http://ftpmaster.internal/ubuntu noble/universe ppc64el librttopo1 ppc64el 1.1.0-3 [231 kB] 162s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libspatialite8t64 ppc64el 5.1.0-3 [2232 kB] 162s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libxerces-c3.2t64 ppc64el 3.2.4+debian-1.2 [1070 kB] 162s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgdal34t64 ppc64el 3.8.4+dfsg-3ubuntu1 [9796 kB] 162s Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 162s Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 162s Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 162s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 162s Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build2 [49.3 kB] 162s Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2 [158 kB] 162s Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2 [21.4 kB] 162s Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.51.0+ds-4 [266 kB] 162s Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.51.0+ds-4 [49.5 kB] 162s Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.51.0+ds-4 [31.2 kB] 162s Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29 [13.5 kB] 162s Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29 [8710 B] 162s Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build2 [18.5 kB] 162s Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB] 162s Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB] 162s Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B] 162s Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB] 163s Get:90 http://ftpmaster.internal/ubuntu noble/universe ppc64el libudunits2-data all 2.2.28-7 [19.3 kB] 163s Get:91 http://ftpmaster.internal/ubuntu noble/universe ppc64el libudunits2-0 ppc64el 2.2.28-7 [65.9 kB] 163s Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6 ppc64el 1:1.2.1-1.1 [198 kB] 163s Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13 [192 kB] 163s Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu3 [192 kB] 163s Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 163s Get:96 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-core ppc64el 4.3.2-1build1 [27.4 MB] 164s Get:97 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-littler ppc64el 0.3.19-1 [95.1 kB] 164s Get:98 http://ftpmaster.internal/ubuntu noble/universe ppc64el littler all 0.3.19-1 [2472 B] 164s Get:99 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-abind all 1.4-5-2 [63.6 kB] 164s Get:100 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-mass ppc64el 7.3-60.0.1-1 [1126 kB] 164s Get:101 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-class ppc64el 7.3-22-2 [92.5 kB] 164s Get:102 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-proxy ppc64el 0.4-27-1 [185 kB] 164s Get:103 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-e1071 ppc64el 1.7-14-1 [573 kB] 164s Get:104 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-kernsmooth ppc64el 2.23-22-1 [94.6 kB] 164s Get:105 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-classint ppc64el 0.4-10+dfsg-1 [106 kB] 164s Get:106 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-codetools all 0.2-19-1 [90.5 kB] 164s Get:107 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dbi all 1.2.2-1 [823 kB] 164s Get:108 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-digest ppc64el 0.6.34-1 [198 kB] 164s Get:109 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dotcall64 ppc64el 1.1-1-1 [48.0 kB] 164s Get:110 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 164s Get:111 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rcpp ppc64el 1.0.12-1 [1989 kB] 165s Get:112 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-spam ppc64el 2.10-0-1 [2789 kB] 165s Get:113 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-viridislite all 0.4.2-2 [1088 kB] 165s Get:114 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-maps ppc64el 3.4.2-1 [2366 kB] 165s Get:115 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fields ppc64el 15.2-1 [4098 kB] 165s Get:116 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fnn ppc64el 1.1.4-1 [134 kB] 165s Get:117 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-globals all 0.16.2-1 [117 kB] 165s Get:118 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 165s Get:119 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-parallelly ppc64el 1.37.1-1 [365 kB] 165s Get:120 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-future all 1.33.1+dfsg-1 [634 kB] 165s Get:121 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 165s Get:122 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lattice ppc64el 0.22-5-1 [1343 kB] 165s Get:123 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-sp ppc64el 1:2.1-2+dfsg-1 [1451 kB] 165s Get:124 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-zoo ppc64el 1.8-12-2 [986 kB] 165s Get:125 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-magrittr ppc64el 2.0.3-1 [154 kB] 165s Get:126 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-wk ppc64el 0.9.1-1 [1858 kB] 166s Get:127 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-s2 ppc64el 1.1.6-1 [2166 kB] 166s Get:128 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-units ppc64el 0.8-5+dfsg-1 [275 kB] 166s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el r-cran-sf ppc64el 1.0-15+dfsg-1build1 [3029 kB] 166s Get:130 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-sftime all 0.2-0-6 [168 kB] 166s Get:131 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xts ppc64el 0.13.2-1 [789 kB] 166s Get:132 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-intervals ppc64el 0.15.4-1 [757 kB] 166s Get:133 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-spacetime all 1.3-1-1 [2804 kB] 166s Get:134 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rlang ppc64el 1.1.3-1 [1696 kB] 166s Get:135 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-stars all 0.6-4-1 [4030 kB] 166s Get:136 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-gstat ppc64el 2.1-1-2 [2368 kB] 166s Get:137 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-mapdata ppc64el 2.3.1-1 [23.5 MB] 168s Get:138 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-terra ppc64el 1.7-65-1 [3796 kB] 168s Get:139 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-raster ppc64el 3.6-26-1 [3121 kB] 169s Preconfiguring packages ... 169s Fetched 145 MB in 11s (13.5 MB/s) 169s dpkg: libpng16-16:ppc64el: dependency problems, but removing anyway as you requested: 169s libplymouth5:ppc64el depends on libpng16-16 (>= 1.6.2). 169s libfreetype6:ppc64el depends on libpng16-16 (>= 1.6.2-1). 169s 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70097 files and directories currently installed.) 169s Removing libpng16-16:ppc64el (1.6.43-1) ... 169s Selecting previously unselected package libpng16-16t64:ppc64el. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70087 files and directories currently installed.) 169s Preparing to unpack .../000-libpng16-16t64_1.6.43-3_ppc64el.deb ... 169s Unpacking libpng16-16t64:ppc64el (1.6.43-3) ... 169s Selecting previously unselected package fonts-dejavu-mono. 169s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ... 169s Unpacking fonts-dejavu-mono (2.37-8) ... 169s Selecting previously unselected package fonts-dejavu-core. 169s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ... 169s Unpacking fonts-dejavu-core (2.37-8) ... 169s Selecting previously unselected package fontconfig-config. 169s Preparing to unpack .../003-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 169s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 169s Selecting previously unselected package libfontconfig1:ppc64el. 169s Preparing to unpack .../004-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 169s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 169s Selecting previously unselected package fontconfig. 169s Preparing to unpack .../005-fontconfig_2.15.0-1ubuntu1_ppc64el.deb ... 169s Unpacking fontconfig (2.15.0-1ubuntu1) ... 169s Selecting previously unselected package gdal-data. 169s Preparing to unpack .../006-gdal-data_3.8.4+dfsg-3ubuntu1_all.deb ... 169s Unpacking gdal-data (3.8.4+dfsg-3ubuntu1) ... 169s Selecting previously unselected package gdal-plugins:ppc64el. 169s Preparing to unpack .../007-gdal-plugins_3.8.4+dfsg-3ubuntu1_ppc64el.deb ... 169s Unpacking gdal-plugins:ppc64el (3.8.4+dfsg-3ubuntu1) ... 169s Selecting previously unselected package libaec0:ppc64el. 169s Preparing to unpack .../008-libaec0_1.1.2-1_ppc64el.deb ... 169s Unpacking libaec0:ppc64el (1.1.2-1) ... 169s Selecting previously unselected package libblas3:ppc64el. 169s Preparing to unpack .../009-libblas3_3.12.0-3_ppc64el.deb ... 169s Unpacking libblas3:ppc64el (3.12.0-3) ... 169s Selecting previously unselected package libgfortran5:ppc64el. 169s Preparing to unpack .../010-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 169s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 169s Selecting previously unselected package liblapack3:ppc64el. 169s Preparing to unpack .../011-liblapack3_3.12.0-3_ppc64el.deb ... 169s Unpacking liblapack3:ppc64el (3.12.0-3) ... 169s Selecting previously unselected package libarpack2:ppc64el. 169s Preparing to unpack .../012-libarpack2_3.9.1-1_ppc64el.deb ... 169s Unpacking libarpack2:ppc64el (3.9.1-1) ... 169s Selecting previously unselected package libsuperlu6:ppc64el. 169s Preparing to unpack .../013-libsuperlu6_6.0.1+dfsg1-1_ppc64el.deb ... 169s Unpacking libsuperlu6:ppc64el (6.0.1+dfsg1-1) ... 169s Selecting previously unselected package libarmadillo12. 169s Preparing to unpack .../014-libarmadillo12_1%3a12.6.7+dfsg-1_ppc64el.deb ... 169s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 169s Selecting previously unselected package libsnappy1v5:ppc64el. 169s Preparing to unpack .../015-libsnappy1v5_1.1.10-1_ppc64el.deb ... 169s Unpacking libsnappy1v5:ppc64el (1.1.10-1) ... 169s Selecting previously unselected package libblosc1:ppc64el. 169s Preparing to unpack .../016-libblosc1_1.21.5+ds-1_ppc64el.deb ... 169s Unpacking libblosc1:ppc64el (1.21.5+ds-1) ... 169s Selecting previously unselected package libpixman-1-0:ppc64el. 169s Preparing to unpack .../017-libpixman-1-0_0.42.2-1_ppc64el.deb ... 169s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ... 169s Selecting previously unselected package libxcb-render0:ppc64el. 169s Preparing to unpack .../018-libxcb-render0_1.15-1_ppc64el.deb ... 169s Unpacking libxcb-render0:ppc64el (1.15-1) ... 169s Selecting previously unselected package libxcb-shm0:ppc64el. 169s Preparing to unpack .../019-libxcb-shm0_1.15-1_ppc64el.deb ... 169s Unpacking libxcb-shm0:ppc64el (1.15-1) ... 169s Selecting previously unselected package libxrender1:ppc64el. 169s Preparing to unpack .../020-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 169s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 169s Selecting previously unselected package libcairo2:ppc64el. 169s Preparing to unpack .../021-libcairo2_1.18.0-1_ppc64el.deb ... 169s Unpacking libcairo2:ppc64el (1.18.0-1) ... 170s Selecting previously unselected package libcfitsio10t64:ppc64el. 170s Preparing to unpack .../022-libcfitsio10t64_4.3.1-1.1_ppc64el.deb ... 170s Unpacking libcfitsio10t64:ppc64el (4.3.1-1.1) ... 170s Selecting previously unselected package libdatrie1:ppc64el. 170s Preparing to unpack .../023-libdatrie1_0.2.13-3_ppc64el.deb ... 170s Unpacking libdatrie1:ppc64el (0.2.13-3) ... 170s Selecting previously unselected package libdav1d7:ppc64el. 170s Preparing to unpack .../024-libdav1d7_1.4.0-1_ppc64el.deb ... 170s Unpacking libdav1d7:ppc64el (1.4.0-1) ... 170s Selecting previously unselected package libde265-0:ppc64el. 170s Preparing to unpack .../025-libde265-0_1.0.15-1_ppc64el.deb ... 170s Unpacking libde265-0:ppc64el (1.0.15-1) ... 170s Selecting previously unselected package libdeflate0:ppc64el. 170s Preparing to unpack .../026-libdeflate0_1.19-1_ppc64el.deb ... 170s Unpacking libdeflate0:ppc64el (1.19-1) ... 170s Selecting previously unselected package libfyba0:ppc64el. 170s Preparing to unpack .../027-libfyba0_4.1.1-8_ppc64el.deb ... 170s Unpacking libfyba0:ppc64el (4.1.1-8) ... 170s Selecting previously unselected package libminizip1t64:ppc64el. 170s Preparing to unpack .../028-libminizip1t64_1%3a1.3.dfsg-3.1ubuntu1_ppc64el.deb ... 170s Unpacking libminizip1t64:ppc64el (1:1.3.dfsg-3.1ubuntu1) ... 170s Selecting previously unselected package libfreexl1:ppc64el. 170s Preparing to unpack .../029-libfreexl1_2.0.0-1_ppc64el.deb ... 170s Unpacking libfreexl1:ppc64el (2.0.0-1) ... 170s Selecting previously unselected package libgeos3.12.1t64:ppc64el. 170s Preparing to unpack .../030-libgeos3.12.1t64_3.12.1-3_ppc64el.deb ... 170s Unpacking libgeos3.12.1t64:ppc64el (3.12.1-3) ... 170s Selecting previously unselected package libgeos-c1t64:ppc64el. 170s Preparing to unpack .../031-libgeos-c1t64_3.12.1-3_ppc64el.deb ... 170s Unpacking libgeos-c1t64:ppc64el (3.12.1-3) ... 170s Selecting previously unselected package proj-data. 170s Preparing to unpack .../032-proj-data_9.4.0-1_all.deb ... 170s Unpacking proj-data (9.4.0-1) ... 170s Selecting previously unselected package libjbig0:ppc64el. 170s Preparing to unpack .../033-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 170s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 170s Selecting previously unselected package libjpeg-turbo8:ppc64el. 170s Preparing to unpack .../034-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 170s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 170s Selecting previously unselected package libjpeg8:ppc64el. 170s Preparing to unpack .../035-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 170s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 170s Selecting previously unselected package liblerc4:ppc64el. 170s Preparing to unpack .../036-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 170s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 170s Selecting previously unselected package libsharpyuv0:ppc64el. 170s Preparing to unpack .../037-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 170s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 170s Selecting previously unselected package libwebp7:ppc64el. 170s Preparing to unpack .../038-libwebp7_1.3.2-0.4_ppc64el.deb ... 170s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 170s Selecting previously unselected package libtiff6:ppc64el. 170s Preparing to unpack .../039-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 170s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 170s Selecting previously unselected package libproj25:ppc64el. 170s Preparing to unpack .../040-libproj25_9.4.0-1_ppc64el.deb ... 170s Unpacking libproj25:ppc64el (9.4.0-1) ... 170s Selecting previously unselected package libgeotiff5:ppc64el. 170s Preparing to unpack .../041-libgeotiff5_1.7.1-5_ppc64el.deb ... 170s Unpacking libgeotiff5:ppc64el (1.7.1-5) ... 170s Selecting previously unselected package libgif7:ppc64el. 170s Preparing to unpack .../042-libgif7_5.2.1-2.5_ppc64el.deb ... 170s Unpacking libgif7:ppc64el (5.2.1-2.5) ... 170s Selecting previously unselected package libhdf4-0-alt. 170s Preparing to unpack .../043-libhdf4-0-alt_4.2.16-3_ppc64el.deb ... 170s Unpacking libhdf4-0-alt (4.2.16-3) ... 170s Selecting previously unselected package libsz2:ppc64el. 170s Preparing to unpack .../044-libsz2_1.1.2-1_ppc64el.deb ... 170s Unpacking libsz2:ppc64el (1.1.2-1) ... 170s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 170s Preparing to unpack .../045-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu2_ppc64el.deb ... 170s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 170s Selecting previously unselected package libheif-plugin-dav1d:ppc64el. 170s Preparing to unpack .../046-libheif-plugin-dav1d_1.17.6-1ubuntu1_ppc64el.deb ... 170s Unpacking libheif-plugin-dav1d:ppc64el (1.17.6-1ubuntu1) ... 170s Selecting previously unselected package libheif-plugin-libde265:ppc64el. 170s Preparing to unpack .../047-libheif-plugin-libde265_1.17.6-1ubuntu1_ppc64el.deb ... 170s Unpacking libheif-plugin-libde265:ppc64el (1.17.6-1ubuntu1) ... 170s Selecting previously unselected package libheif1:ppc64el. 170s Preparing to unpack .../048-libheif1_1.17.6-1ubuntu1_ppc64el.deb ... 170s Unpacking libheif1:ppc64el (1.17.6-1ubuntu1) ... 170s Selecting previously unselected package liburiparser1:ppc64el. 170s Preparing to unpack .../049-liburiparser1_0.9.7+dfsg-2_ppc64el.deb ... 170s Unpacking liburiparser1:ppc64el (0.9.7+dfsg-2) ... 170s Selecting previously unselected package libkmlbase1t64:ppc64el. 170s Preparing to unpack .../050-libkmlbase1t64_1.3.0-12_ppc64el.deb ... 170s Unpacking libkmlbase1t64:ppc64el (1.3.0-12) ... 170s Selecting previously unselected package libkmldom1t64:ppc64el. 170s Preparing to unpack .../051-libkmldom1t64_1.3.0-12_ppc64el.deb ... 170s Unpacking libkmldom1t64:ppc64el (1.3.0-12) ... 170s Selecting previously unselected package libkmlengine1t64:ppc64el. 170s Preparing to unpack .../052-libkmlengine1t64_1.3.0-12_ppc64el.deb ... 170s Unpacking libkmlengine1t64:ppc64el (1.3.0-12) ... 170s Selecting previously unselected package mysql-common. 170s Preparing to unpack .../053-mysql-common_5.8+1.1.0_all.deb ... 170s Unpacking mysql-common (5.8+1.1.0) ... 170s Selecting previously unselected package libmysqlclient21:ppc64el. 170s Preparing to unpack .../054-libmysqlclient21_8.0.36-1_ppc64el.deb ... 170s Unpacking libmysqlclient21:ppc64el (8.0.36-1) ... 170s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 170s Preparing to unpack .../055-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu2_ppc64el.deb ... 170s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 170s Selecting previously unselected package libnetcdf19t64:ppc64el. 170s Preparing to unpack .../056-libnetcdf19t64_1%3a4.9.2-5ubuntu2_ppc64el.deb ... 170s Unpacking libnetcdf19t64:ppc64el (1:4.9.2-5ubuntu2) ... 170s Selecting previously unselected package libltdl7:ppc64el. 170s Preparing to unpack .../057-libltdl7_2.4.7-7_ppc64el.deb ... 170s Unpacking libltdl7:ppc64el (2.4.7-7) ... 170s Selecting previously unselected package libodbc2:ppc64el. 170s Preparing to unpack .../058-libodbc2_2.3.12-1_ppc64el.deb ... 170s Unpacking libodbc2:ppc64el (2.3.12-1) ... 170s Selecting previously unselected package unixodbc-common. 171s Preparing to unpack .../059-unixodbc-common_2.3.12-1_all.deb ... 171s Unpacking unixodbc-common (2.3.12-1) ... 171s Selecting previously unselected package libodbcinst2:ppc64el. 171s Preparing to unpack .../060-libodbcinst2_2.3.12-1_ppc64el.deb ... 171s Unpacking libodbcinst2:ppc64el (2.3.12-1) ... 171s Selecting previously unselected package libogdi4.1. 171s Preparing to unpack .../061-libogdi4.1_4.1.1+ds-1_ppc64el.deb ... 171s Unpacking libogdi4.1 (4.1.1+ds-1) ... 171s Selecting previously unselected package libopenjp2-7:ppc64el. 171s Preparing to unpack .../062-libopenjp2-7_2.5.0-2_ppc64el.deb ... 171s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ... 171s Selecting previously unselected package liblcms2-2:ppc64el. 171s Preparing to unpack .../063-liblcms2-2_2.14-2_ppc64el.deb ... 171s Unpacking liblcms2-2:ppc64el (2.14-2) ... 171s Selecting previously unselected package libpoppler134:ppc64el. 171s Preparing to unpack .../064-libpoppler134_24.02.0-1ubuntu2_ppc64el.deb ... 171s Unpacking libpoppler134:ppc64el (24.02.0-1ubuntu2) ... 171s Selecting previously unselected package libpq5:ppc64el. 171s Preparing to unpack .../065-libpq5_16.2-1_ppc64el.deb ... 171s Unpacking libpq5:ppc64el (16.2-1) ... 171s Selecting previously unselected package libqhull-r8.0:ppc64el. 171s Preparing to unpack .../066-libqhull-r8.0_2020.2-6_ppc64el.deb ... 171s Unpacking libqhull-r8.0:ppc64el (2020.2-6) ... 171s Selecting previously unselected package librttopo1:ppc64el. 171s Preparing to unpack .../067-librttopo1_1.1.0-3_ppc64el.deb ... 171s Unpacking librttopo1:ppc64el (1.1.0-3) ... 171s Selecting previously unselected package libspatialite8t64:ppc64el. 171s Preparing to unpack .../068-libspatialite8t64_5.1.0-3_ppc64el.deb ... 171s Unpacking libspatialite8t64:ppc64el (5.1.0-3) ... 171s Selecting previously unselected package libxerces-c3.2t64:ppc64el. 171s Preparing to unpack .../069-libxerces-c3.2t64_3.2.4+debian-1.2_ppc64el.deb ... 171s Unpacking libxerces-c3.2t64:ppc64el (3.2.4+debian-1.2) ... 171s Selecting previously unselected package libgdal34t64:ppc64el. 171s Preparing to unpack .../070-libgdal34t64_3.8.4+dfsg-3ubuntu1_ppc64el.deb ... 171s Unpacking libgdal34t64:ppc64el (3.8.4+dfsg-3ubuntu1) ... 171s Selecting previously unselected package libgomp1:ppc64el. 171s Preparing to unpack .../071-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 171s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 171s Selecting previously unselected package libgraphite2-3:ppc64el. 171s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_ppc64el.deb ... 171s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 171s Selecting previously unselected package libharfbuzz0b:ppc64el. 171s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 171s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 171s Selecting previously unselected package x11-common. 171s Preparing to unpack .../074-x11-common_1%3a7.7+23ubuntu2_all.deb ... 171s Unpacking x11-common (1:7.7+23ubuntu2) ... 171s Selecting previously unselected package libice6:ppc64el. 171s Preparing to unpack .../075-libice6_2%3a1.0.10-1build2_ppc64el.deb ... 171s Unpacking libice6:ppc64el (2:1.0.10-1build2) ... 171s Selecting previously unselected package libthai-data. 171s Preparing to unpack .../076-libthai-data_0.1.29-2_all.deb ... 171s Unpacking libthai-data (0.1.29-2) ... 171s Selecting previously unselected package libthai0:ppc64el. 171s Preparing to unpack .../077-libthai0_0.1.29-2_ppc64el.deb ... 171s Unpacking libthai0:ppc64el (0.1.29-2) ... 171s Selecting previously unselected package libpango-1.0-0:ppc64el. 171s Preparing to unpack .../078-libpango-1.0-0_1.51.0+ds-4_ppc64el.deb ... 171s Unpacking libpango-1.0-0:ppc64el (1.51.0+ds-4) ... 171s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 171s Preparing to unpack .../079-libpangoft2-1.0-0_1.51.0+ds-4_ppc64el.deb ... 171s Unpacking libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ... 171s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 171s Preparing to unpack .../080-libpangocairo-1.0-0_1.51.0+ds-4_ppc64el.deb ... 171s Unpacking libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ... 171s Selecting previously unselected package libpaper1:ppc64el. 171s Preparing to unpack .../081-libpaper1_1.1.29_ppc64el.deb ... 171s Unpacking libpaper1:ppc64el (1.1.29) ... 171s Selecting previously unselected package libpaper-utils. 171s Preparing to unpack .../082-libpaper-utils_1.1.29_ppc64el.deb ... 171s Unpacking libpaper-utils (1.1.29) ... 171s Selecting previously unselected package libsm6:ppc64el. 171s Preparing to unpack .../083-libsm6_2%3a1.2.3-1build2_ppc64el.deb ... 171s Unpacking libsm6:ppc64el (2:1.2.3-1build2) ... 171s Selecting previously unselected package libtcl8.6:ppc64el. 171s Preparing to unpack .../084-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ... 171s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ... 171s Selecting previously unselected package libxft2:ppc64el. 171s Preparing to unpack .../085-libxft2_2.3.6-1_ppc64el.deb ... 171s Unpacking libxft2:ppc64el (2.3.6-1) ... 171s Selecting previously unselected package libxss1:ppc64el. 171s Preparing to unpack .../086-libxss1_1%3a1.2.3-1build2_ppc64el.deb ... 171s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ... 171s Selecting previously unselected package libtk8.6:ppc64el. 171s Preparing to unpack .../087-libtk8.6_8.6.13-2_ppc64el.deb ... 171s Unpacking libtk8.6:ppc64el (8.6.13-2) ... 171s Selecting previously unselected package libudunits2-data. 171s Preparing to unpack .../088-libudunits2-data_2.2.28-7_all.deb ... 171s Unpacking libudunits2-data (2.2.28-7) ... 171s Selecting previously unselected package libudunits2-0. 171s Preparing to unpack .../089-libudunits2-0_2.2.28-7_ppc64el.deb ... 171s Unpacking libudunits2-0 (2.2.28-7) ... 172s Selecting previously unselected package libxt6:ppc64el. 172s Preparing to unpack .../090-libxt6_1%3a1.2.1-1.1_ppc64el.deb ... 172s Unpacking libxt6:ppc64el (1:1.2.1-1.1) ... 172s Selecting previously unselected package zip. 172s Preparing to unpack .../091-zip_3.0-13_ppc64el.deb ... 172s Unpacking zip (3.0-13) ... 172s Selecting previously unselected package unzip. 172s Preparing to unpack .../092-unzip_6.0-28ubuntu3_ppc64el.deb ... 172s Unpacking unzip (6.0-28ubuntu3) ... 172s Selecting previously unselected package xdg-utils. 172s Preparing to unpack .../093-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 172s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 172s Selecting previously unselected package r-base-core. 172s Preparing to unpack .../094-r-base-core_4.3.2-1build1_ppc64el.deb ... 172s Unpacking r-base-core (4.3.2-1build1) ... 172s Selecting previously unselected package r-cran-littler. 172s Preparing to unpack .../095-r-cran-littler_0.3.19-1_ppc64el.deb ... 172s Unpacking r-cran-littler (0.3.19-1) ... 172s Selecting previously unselected package littler. 172s Preparing to unpack .../096-littler_0.3.19-1_all.deb ... 172s Unpacking littler (0.3.19-1) ... 172s Selecting previously unselected package r-cran-abind. 172s Preparing to unpack .../097-r-cran-abind_1.4-5-2_all.deb ... 172s Unpacking r-cran-abind (1.4-5-2) ... 172s Selecting previously unselected package r-cran-mass. 172s Preparing to unpack .../098-r-cran-mass_7.3-60.0.1-1_ppc64el.deb ... 172s Unpacking r-cran-mass (7.3-60.0.1-1) ... 172s Selecting previously unselected package r-cran-class. 172s Preparing to unpack .../099-r-cran-class_7.3-22-2_ppc64el.deb ... 172s Unpacking r-cran-class (7.3-22-2) ... 172s Selecting previously unselected package r-cran-proxy. 172s Preparing to unpack .../100-r-cran-proxy_0.4-27-1_ppc64el.deb ... 172s Unpacking r-cran-proxy (0.4-27-1) ... 172s Selecting previously unselected package r-cran-e1071. 172s Preparing to unpack .../101-r-cran-e1071_1.7-14-1_ppc64el.deb ... 172s Unpacking r-cran-e1071 (1.7-14-1) ... 172s Selecting previously unselected package r-cran-kernsmooth. 172s Preparing to unpack .../102-r-cran-kernsmooth_2.23-22-1_ppc64el.deb ... 172s Unpacking r-cran-kernsmooth (2.23-22-1) ... 172s Selecting previously unselected package r-cran-classint. 172s Preparing to unpack .../103-r-cran-classint_0.4-10+dfsg-1_ppc64el.deb ... 172s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 172s Selecting previously unselected package r-cran-codetools. 172s Preparing to unpack .../104-r-cran-codetools_0.2-19-1_all.deb ... 172s Unpacking r-cran-codetools (0.2-19-1) ... 172s Selecting previously unselected package r-cran-dbi. 172s Preparing to unpack .../105-r-cran-dbi_1.2.2-1_all.deb ... 172s Unpacking r-cran-dbi (1.2.2-1) ... 172s Selecting previously unselected package r-cran-digest. 172s Preparing to unpack .../106-r-cran-digest_0.6.34-1_ppc64el.deb ... 172s Unpacking r-cran-digest (0.6.34-1) ... 172s Selecting previously unselected package r-cran-dotcall64. 172s Preparing to unpack .../107-r-cran-dotcall64_1.1-1-1_ppc64el.deb ... 172s Unpacking r-cran-dotcall64 (1.1-1-1) ... 172s Selecting previously unselected package r-cran-pkgkitten. 172s Preparing to unpack .../108-r-cran-pkgkitten_0.2.3-1_all.deb ... 172s Unpacking r-cran-pkgkitten (0.2.3-1) ... 172s Selecting previously unselected package r-cran-rcpp. 172s Preparing to unpack .../109-r-cran-rcpp_1.0.12-1_ppc64el.deb ... 172s Unpacking r-cran-rcpp (1.0.12-1) ... 173s Selecting previously unselected package r-cran-spam. 173s Preparing to unpack .../110-r-cran-spam_2.10-0-1_ppc64el.deb ... 173s Unpacking r-cran-spam (2.10-0-1) ... 173s Selecting previously unselected package r-cran-viridislite. 173s Preparing to unpack .../111-r-cran-viridislite_0.4.2-2_all.deb ... 173s Unpacking r-cran-viridislite (0.4.2-2) ... 173s Selecting previously unselected package r-cran-maps. 173s Preparing to unpack .../112-r-cran-maps_3.4.2-1_ppc64el.deb ... 173s Unpacking r-cran-maps (3.4.2-1) ... 173s Selecting previously unselected package r-cran-fields. 173s Preparing to unpack .../113-r-cran-fields_15.2-1_ppc64el.deb ... 173s Unpacking r-cran-fields (15.2-1) ... 173s Selecting previously unselected package r-cran-fnn. 173s Preparing to unpack .../114-r-cran-fnn_1.1.4-1_ppc64el.deb ... 173s Unpacking r-cran-fnn (1.1.4-1) ... 173s Selecting previously unselected package r-cran-globals. 173s Preparing to unpack .../115-r-cran-globals_0.16.2-1_all.deb ... 173s Unpacking r-cran-globals (0.16.2-1) ... 173s Selecting previously unselected package r-cran-listenv. 173s Preparing to unpack .../116-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 173s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 173s Selecting previously unselected package r-cran-parallelly. 173s Preparing to unpack .../117-r-cran-parallelly_1.37.1-1_ppc64el.deb ... 173s Unpacking r-cran-parallelly (1.37.1-1) ... 173s Selecting previously unselected package r-cran-future. 173s Preparing to unpack .../118-r-cran-future_1.33.1+dfsg-1_all.deb ... 173s Unpacking r-cran-future (1.33.1+dfsg-1) ... 173s Selecting 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(1.7-65-1) ... 177s Setting up r-cran-sf (1.0-15+dfsg-1build1) ... 177s Setting up r-cran-stars (0.6-4-1) ... 177s Setting up r-cran-sftime (0.2-0-6) ... 177s Setting up r-cran-gstat (2.1-1-2) ... 177s Setting up r-cran-raster (3.6-26-1) ... 177s Setting up autopkgtest-satdep (0) ... 177s Processing triggers for libc-bin (2.39-0ubuntu2) ... 177s Processing triggers for man-db (2.12.0-3) ... 178s Processing triggers for install-info (7.1-3) ... 184s (Reading database ... 76446 files and directories currently installed.) 184s Removing autopkgtest-satdep (0) ... 184s autopkgtest [17:24:23]: test run-unit-test: [----------------------- 184s BEGIN TEST allier.R 185s 185s R version 4.3.2 (2023-10-31) -- "Eye Holes" 185s Copyright (C) 2023 The R Foundation for Statistical Computing 185s Platform: powerpc64le-unknown-linux-gnu (64-bit) 185s 185s R is free software and comes with ABSOLUTELY NO WARRANTY. 185s You are welcome to redistribute it under certain conditions. 185s Type 'license()' or 'licence()' for distribution details. 185s 185s R is a collaborative project with many contributors. 185s Type 'contributors()' for more information and 185s 'citation()' on how to cite R or R packages in publications. 185s 185s Type 'demo()' for some demos, 'help()' for on-line help, or 185s 'help.start()' for an HTML browser interface to help. 185s Type 'q()' to quit R. 185s 185s > # Sytze de Bruin's post to r-sig-geo, Nov 16, 2015: 185s > library(sp) 185s > library(gstat) 185s > 185s > # some data 185s > x <- c(215, 330, 410, 470, 545) 185s > y <- c(230, 310, 330, 340, 365) 185s > fc <- c(0.211, 0.251, 0.281, 0.262, 0.242) 185s > por <- c(0.438, 0.457, 0.419, 0.430, 0.468) 185s > Allier <- data.frame(x, y, fc, por) 185s > coordinates(Allier) = ~x+y 185s > 185s > # gstat object for co-kriging using linear model of co-regionalization 185s > g <- gstat(id=c("fc"), formula=fc~1, data=Allier, 185s + model=vgm(0.00247, "Sph", 480, 0.00166)) 185s > g <- gstat(g, id="por", formula=por~1, data=Allier, 185s + model=vgm(0.00239, "Sph", 480, 0.00118)) 185s > g <- gstat(g, id=c("fc", "por"), 185s + model=vgm(0.00151, "Sph", 480, -0.00124)) 185s > 185s > # predict at single point 185s > g$set = list(choleski = 0) # LDL' 185s > A <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 186s Linear Model of Coregionalization found. Good. 186s [using ordinary cokriging] 186s we're at location X: 450 Y: 350 Z: 0 186s zero block size 186s we're at point X: 450 Y: 350 Z: 0 186s 186s # X: 186s #Matrix: 10 by 2 186s rbind( 186s c( 1.000000, 0.000000), # row 1 186s c( 1.000000, 0.000000), # row 2 186s c( 1.000000, 0.000000), # row 3 186s c( 1.000000, 0.000000), # row 4 186s c( 1.000000, 0.000000), # row 5 186s c( 0.000000, 1.000000), # row 6 186s c( 0.000000, 1.000000), # row 7 186s c( 0.000000, 1.000000), # row 8 186s c( 0.000000, 1.000000), # row 9 186s c( 0.000000, 1.000000) # row 10 186s ) 186s [using generalized covariances: max_val - semivariance()] 186s # Covariances (x_i, x_j) matrix C (upper triangle): 186s #Matrix: 10 by 10 186s rbind( 186s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 186s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 186s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 186s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 186s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 186s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 186s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 186s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 186s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 186s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 186s ) 186s 186s # glm->C, LDL' decomposed:: 186s #Matrix: 10 by 10 186s rbind( 186s c( 0.003399, 0.372269, 0.208612, 0.127967, 0.016746, -0.025847, 0.223862, 0.148767, 0.104047, 0.038371), # row 1 186s c( 0.000000, 0.002661, 0.483725, 0.327484, 0.153742, 0.233021, -0.125118, 0.262410, 0.219271, 0.150536), # row 2 186s c( 0.000000, 0.000000, 0.002276, 0.540203, 0.303585, 0.058071, 0.314376, -0.175899, 0.295181, 0.243817), # row 3 186s c( 0.000000, 0.000000, 0.000000, 0.002484, 0.483068, 0.000301, 0.115816, 0.377362, -0.115338, 0.319418), # row 4 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.003690, -0.038142, 0.000474, 0.120915, 0.377730, 0.075630), # row 5 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003019, 0.354325, 0.235465, 0.164684, 0.060733), # row 6 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002623, 0.415337, 0.347059, 0.238266), # row 7 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002458, 0.467207, 0.385909), # row 8 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.002658, 0.505569), # row 9 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.003570) # row 10 186s ) 186s 186s # X'C-1 X: 186s #Matrix: 2 by 2 186s rbind( 186s c(665.433994, -232.313340), # row 1 186s c(-232.313340, 729.440848) # row 2 186s ) 186s 186s # beta: 186s #Vector: dim: 2 186s c( 0.244216, 0.440933) 186s # Cov(beta), (X'C-1 X)-1: 186s #Matrix: 2 by 2 186s rbind( 186s c( 0.001691, 0.000538), # row 1 186s c( 0.000538, 0.001542) # row 2 186s ) 186s 186s # Corr(beta): 186s #Matrix: 2 by 2 186s rbind( 186s c( 1.000000, 0.333447), # row 1 186s c( 0.333447, 1.000000) # row 2 186s ) 186s 186s # X0 (X values at prediction location x0): 186s #Matrix: 2 by 2 186s rbind( 186s c( 1.000000, 0.000000), # row 1 186s c( 0.000000, 1.000000) # row 2 186s ) 186s 186s # BLUE(mu), E(y(x0)) = X0'beta: 186s #Vector: dim: 2 186s c( 0.244216, 0.440933) 186s # Covariances (x_i, x_0), C0: 186s #Matrix: 10 by 2 186s rbind( 186s c( 0.000638, 0.000390), # row 1 186s c( 0.001516, 0.000927), # row 2 186s c( 0.002126, 0.001300), # row 3 186s c( 0.002298, 0.001405), # row 4 186s c( 0.001738, 0.001062), # row 5 186s c( 0.000390, 0.000618), # row 6 186s c( 0.000927, 0.001467), # row 7 186s c( 0.001300, 0.002057), # row 8 186s c( 0.001405, 0.002223), # row 9 186s c( 0.001062, 0.001681) # row 10 186s ) 186s 186s # C-1 C0: 186s #Matrix: 10 by 2 186s rbind( 186s c( 0.008927, -0.017995), # row 1 186s c( 0.061935, -0.028550), # row 2 186s c( 0.225195, 0.078344), # row 3 186s c( 0.356735, 0.190177), # row 4 186s c( 0.094128, -0.023136), # row 5 186s c(-0.021119, 0.004935), # row 6 186s c(-0.033508, 0.055601), # row 7 186s c( 0.091947, 0.242576), # row 8 186s c( 0.223200, 0.398927), # row 9 186s c(-0.027153, 0.088995) # row 10 186s ) 186s 186s # [a] Cov_ij(B,B) or Cov_ij(0,0): 186s #Matrix: 2 by 2 186s rbind( 186s c( 0.004130, 0.000270), # row 1 186s c( 0.000270, 0.003570) # row 2 186s ) 186s 186s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 186s #Matrix: 2 by 2 186s rbind( 186s c( 0.000129, -0.000107), # row 1 186s c(-0.000107, 0.000089) # row 2 186s ) 186s 186s # [b] c0'C-1 c0: 186s #Matrix: 2 by 2 186s rbind( 186s c( 0.001926, 0.001532), # row 1 186s c( 0.001532, 0.001931) # row 2 186s ) 186s 186s # Best Linear Unbiased Predictor: 186s #Vector: dim: 2 186s c( 0.253090, 0.441258) 186s # MSPE ([a]-[b]+[c]): 186s #Matrix: 2 by 2 186s rbind( 186s c( 0.002332, -0.001369), # row 1 186s c(-0.001369, 0.001729) # row 2 186s ) 186s 186s # kriging weights: 186s #Matrix: 10 by 2 186s rbind( 186s c( 0.071177, -0.064988), # row 1 186s c( 0.108451, -0.066123), # row 2 186s c( 0.268160, 0.043141), # row 3 186s c( 0.401959, 0.153312), # row 4 186s c( 0.150253, -0.065342), # row 5 186s c(-0.076273, 0.056759), # row 6 186s c(-0.077605, 0.093781), # row 7 186s c( 0.050632, 0.277731), # row 8 186s c( 0.179933, 0.435972), # row 9 186s c(-0.076688, 0.135756) # row 10 186s ) 186s 186s 186s > g$set = list(choleski = 1) # Choleski 186s > B <- predict(g, SpatialPoints(data.frame(x=450, y=350)), debug = 32) 186s Linear Model of Coregionalization found. Good. 186s [using ordinary cokriging] 186s we're at location X: 450 Y: 350 Z: 0 186s zero block size 186s we're at point X: 450 Y: 350 Z: 0 186s 186s # X: 186s #Matrix: 10 by 2 186s rbind( 186s c( 1.000000, 0.000000), # row 1 186s c( 1.000000, 0.000000), # row 2 186s c( 1.000000, 0.000000), # row 3 186s c( 1.000000, 0.000000), # row 4 186s c( 1.000000, 0.000000), # row 5 186s c( 0.000000, 1.000000), # row 6 186s c( 0.000000, 1.000000), # row 7 186s c( 0.000000, 1.000000), # row 8 186s c( 0.000000, 1.000000), # row 9 186s c( 0.000000, 1.000000) # row 10 186s ) 186s [using generalized covariances: max_val - semivariance()] 186s # Covariances (x_i, x_j) matrix C (upper triangle): 186s #Matrix: 10 by 10 186s rbind( 186s c( 0.004130, 0.001419, 0.000896, 0.000566, 0.000224, 0.000270, 0.000868, 0.000548, 0.000346, 0.000137), # row 1 186s c( 0.001419, 0.004130, 0.001840, 0.001398, 0.000879, 0.000868, 0.000270, 0.001125, 0.000854, 0.000537), # row 2 186s c( 0.000896, 0.001840, 0.004130, 0.002003, 0.001424, 0.000548, 0.001125, 0.000270, 0.001225, 0.000870), # row 3 186s c( 0.000566, 0.001398, 0.002003, 0.004130, 0.001865, 0.000346, 0.000854, 0.001225, 0.000270, 0.001140), # row 4 186s c( 0.000224, 0.000879, 0.001424, 0.001865, 0.004130, 0.000137, 0.000537, 0.000870, 0.001140, 0.000270), # row 5 186s c( 0.000270, 0.000868, 0.000548, 0.000346, 0.000137, 0.003570, 0.001373, 0.000867, 0.000547, 0.000217), # row 6 186s c( 0.000868, 0.000270, 0.001125, 0.000854, 0.000537, 0.001373, 0.003570, 0.001780, 0.001352, 0.000851), # row 7 186s c( 0.000548, 0.001125, 0.000270, 0.001225, 0.000870, 0.000867, 0.001780, 0.003570, 0.001938, 0.001378), # row 8 186s c( 0.000346, 0.000854, 0.001225, 0.000270, 0.001140, 0.000547, 0.001352, 0.001938, 0.003570, 0.001805), # row 9 186s c( 0.000137, 0.000537, 0.000870, 0.001140, 0.000270, 0.000217, 0.000851, 0.001378, 0.001805, 0.003570) # row 10 186s ) 186s 186s # glm->C, Choleski decomposed:: 186s #Matrix: 10 by 10 186s rbind( 186s c( 0.064265, 0.022086, 0.013942, 0.008801, 0.003487, 0.004201, 0.013502, 0.008523, 0.005380, 0.002132), # row 1 186s c( 0.000000, 0.060351, 0.025382, 0.019938, 0.013290, 0.012840, -0.000468, 0.015517, 0.012189, 0.008125), # row 2 186s c( 0.000000, 0.000000, 0.057370, 0.023954, 0.018091, 0.002846, 0.016530, -0.004230, 0.014644, 0.011059), # row 3 186s c( 0.000000, 0.000000, 0.000000, 0.055509, 0.020471, -0.000277, 0.006286, 0.016960, -0.006686, 0.012514), # row 4 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.056523, -0.001665, 0.001218, 0.006437, 0.014711, -0.005337), # row 5 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.058108, 0.022018, 0.011347, 0.006008, 0.001147), # row 6 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.050877, 0.027084, 0.018381, 0.010720), # row 7 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.045247, 0.026914, 0.017658), # row 8 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.042645, 0.023811), # row 9 186s c( 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.000000, 0.046872) # row 10 186s ) 186s 186s # X'C-1 X: 186s #Matrix: 2 by 2 186s rbind( 186s c(665.433994, -232.313340), # row 1 186s c(-232.313340, 729.440848) # row 2 186s ) 186s 186s # beta: 186s #Vector: dim: 2 186s c( 0.244216, 0.440933) 186s # Cov(beta), (X'C-1 X)-1: 186s #Matrix: 2 by 2 186s rbind( 186s c( 0.001691, 0.000538), # row 1 186s c( 0.000538, 0.001542) # row 2 186s ) 186s 186s # Corr(beta): 186s #Matrix: 2 by 2 186s rbind( 186s c( 1.000000, 0.333447), # row 1 186s c( 0.333447, 1.000000) # row 2 186s ) 186s 186s # X0 (X values at prediction location x0): 186s #Matrix: 2 by 2 186s rbind( 186s c( 1.000000, 0.000000), # row 1 186s c( 0.000000, 1.000000) # row 2 186s ) 186s 186s # BLUE(mu), E(y(x0)) = X0'beta: 186s #Vector: dim: 2 186s c( 0.244216, 0.440933) 186s # Covariances (x_i, x_0), C0: 186s #Matrix: 10 by 2 186s rbind( 186s c( 0.000638, 0.000390), # row 1 186s c( 0.001516, 0.000927), # row 2 186s c( 0.002126, 0.001300), # row 3 186s c( 0.002298, 0.001405), # row 4 186s c( 0.001738, 0.001062), # row 5 186s c( 0.000390, 0.000618), # row 6 186s c( 0.000927, 0.001467), # row 7 186s c( 0.001300, 0.002057), # row 8 186s c( 0.001405, 0.002223), # row 9 186s c( 0.001062, 0.001681) # row 10 186s ) 186s 186s # C-1 C0: 186s #Matrix: 10 by 2 186s rbind( 186s c( 0.008927, -0.017995), # row 1 186s c( 0.061935, -0.028550), # row 2 186s c( 0.225195, 0.078344), # row 3 186s c( 0.356735, 0.190177), # row 4 186s c( 0.094128, -0.023136), # row 5 186s c(-0.021119, 0.004935), # row 6 186s c(-0.033508, 0.055601), # row 7 186s c( 0.091947, 0.242576), # row 8 186s c( 0.223200, 0.398927), # row 9 186s c(-0.027153, 0.088995) # row 10 186s ) 186s 186s # [a] Cov_ij(B,B) or Cov_ij(0,0): 186s #Matrix: 2 by 2 186s rbind( 186s c( 0.004130, 0.000270), # row 1 186s c( 0.000270, 0.003570) # row 2 186s ) 186s 186s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 186s #Matrix: 2 by 2 186s rbind( 186s c( 0.000129, -0.000107), # row 1 186s c(-0.000107, 0.000089) # row 2 186s ) 186s 186s # [b] c0'C-1 c0: 186s #Matrix: 2 by 2 186s rbind( 186s c( 0.001926, 0.001532), # row 1 186s c( 0.001532, 0.001931) # row 2 186s ) 186s 186s # Best Linear Unbiased Predictor: 186s #Vector: dim: 2 186s c( 0.253090, 0.441258) 186s # MSPE ([a]-[b]+[c]): 186s #Matrix: 2 by 2 186s rbind( 186s c( 0.002332, -0.001369), # row 1 186s c(-0.001369, 0.001729) # row 2 186s ) 186s 186s # kriging weights: 186s #Matrix: 10 by 2 186s rbind( 186s c( 0.071177, -0.064988), # row 1 186s c( 0.108451, -0.066123), # row 2 186s c( 0.268160, 0.043141), # row 3 186s c( 0.401959, 0.153312), # row 4 186s c( 0.150253, -0.065342), # row 5 186s c(-0.076273, 0.056759), # row 6 186s c(-0.077605, 0.093781), # row 7 186s c( 0.050632, 0.277731), # row 8 186s c( 0.179933, 0.435972), # row 9 186s c(-0.076688, 0.135756) # row 10 186s ) 186s 186s 186s > all.equal(A,B) 186s [1] TRUE 186s > 186s > # TRUE 186s > 186s BEGIN TEST blockkr.R 186s 186s R version 4.3.2 (2023-10-31) -- "Eye Holes" 186s Copyright (C) 2023 The R Foundation for Statistical Computing 186s Platform: powerpc64le-unknown-linux-gnu (64-bit) 186s 186s R is free software and comes with ABSOLUTELY NO WARRANTY. 186s You are welcome to redistribute it under certain conditions. 186s Type 'license()' or 'licence()' for distribution details. 186s 186s R is a collaborative project with many contributors. 186s Type 'contributors()' for more information and 186s 'citation()' on how to cite R or R packages in publications. 186s 186s Type 'demo()' for some demos, 'help()' for on-line help, or 186s 'help.start()' for an HTML browser interface to help. 186s Type 'q()' to quit R. 186s 186s > library(sp) 186s > data(meuse) 186s > coordinates(meuse) = c("x", "y") 186s > new.locs <- SpatialPoints(data.frame( 186s + x = c(181170, 180310, 180205, 178673, 178770, 178270), 186s + y = c(333250, 332189, 331707, 330066, 330675, 331075))) 186s > library(gstat) 187s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 187s + block = c(40,40), nmax = 40) 187s [using ordinary kriging] 187s coordinates var1.pred var1.var 187s 1 (181170, 333250) 268.7576 19447.67 187s 2 (180310, 332189) 663.4915 16991.33 187s 3 (180205, 331707) 251.4606 21579.71 187s 4 (178673, 330066) 532.5776 73807.91 187s 5 (178770, 330675) 664.4039 23589.17 187s 6 (178270, 331075) 565.5436 155113.23 187s > 187s > new.locs <- SpatialPoints(data.frame(x = c(181170), y = c(333250))) 187s > 187s > disc = c(-15,-5,5,15) 187s > block.irreg <- data.frame(expand.grid(x = disc, y = disc)) 187s > block.irreg 187s x y 187s 1 -15 -15 187s 2 -5 -15 187s 3 5 -15 187s 4 15 -15 187s 5 -15 -5 187s 6 -5 -5 187s 7 5 -5 187s 8 15 -5 187s 9 -15 5 187s 10 -5 5 187s 11 5 5 187s 12 15 5 187s 13 -15 15 187s 14 -5 15 187s 15 5 15 187s 16 15 15 187s > 187s > # first disable default Gaussian quadrature used for block integration, by 187s > # setting nblockdiscr explicitly: 187s > krige(zinc ~ 1, meuse, new.locs, model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 187s + block = c(40,40), nmax = 40, set = list(nblockdiscr=4)) 187s [using ordinary kriging] 187s coordinates var1.pred var1.var 187s 1 (181170, 333250) 268.7324 19568.76 187s > # now pass the same block discretization as block.irreg: 187s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 187s + block = block.irreg, nmax = 40) 187s [using ordinary kriging] 187s coordinates var1.pred var1.var 187s 1 (181170, 333250) 268.7324 19568.76 187s > # check weights argument: 187s > block.irreg <- data.frame(expand.grid(x = disc, y = disc), weights = rep(1/16, 16)) 187s > krige(zinc ~ 1, meuse, new.locs, vgm(1.34e5, "Sph", 800, nug = 2.42e4), 187s + block = block.irreg, nmax = 40) 187s [using ordinary kriging] 187s coordinates var1.pred var1.var 187s 1 (181170, 333250) 268.7324 19568.76 187s > 187s BEGIN TEST covtable.R 187s 187s R version 4.3.2 (2023-10-31) -- "Eye Holes" 187s Copyright (C) 2023 The R Foundation for Statistical Computing 187s Platform: powerpc64le-unknown-linux-gnu (64-bit) 187s 187s R is free software and comes with ABSOLUTELY NO WARRANTY. 187s You are welcome to redistribute it under certain conditions. 187s Type 'license()' or 'licence()' for distribution details. 187s 187s R is a collaborative project with many contributors. 187s Type 'contributors()' for more information and 187s 'citation()' on how to cite R or R packages in publications. 187s 187s Type 'demo()' for some demos, 'help()' for on-line help, or 187s 'help.start()' for an HTML browser interface to help. 187s Type 'q()' to quit R. 187s 188s > library(gstat) 188s > d=expand.grid(x=c(-.5,.5), y=c(-.5,.5)) 188s > d$z=1:4 188s > vv=vgm(model = "Tab", covtable = 188s + variogramLine(vgm(1, "Sph", 1), 1, n=1e4,min = 0, covariance = TRUE)) 188s > vv 188s model psill maxdist 188s 1 Tab NA 1 188s covariance table: 188s [1] 1.0000000 0.7039712 0.4319496 0.2080384 0.0560108 0.0000000 188s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vgm(1, "Sph", 1)) 189s [using ordinary kriging] 189s x y var1.pred var1.var 189s 1 0 0 2.5 1.017767 189s > krige(z~1,~x+y,d,data.frame(x=0,y=0),vv) 189s [using ordinary kriging] 189s x y var1.pred var1.var 189s 1 0 0 2.5 1.017863 189s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vgm(1, "Sph", 1)) 189s [using ordinary kriging] 189s x y var1.pred var1.var 189s 1 0 0 1.5 1.267767 189s > krige(z~1,~x+y,d[1:2,],data.frame(x=0,y=0),vv) 189s [using ordinary kriging] 189s x y var1.pred var1.var 189s 1 0 0 1.5 1.267863 189s > 189s BEGIN TEST cv.R 189s 189s R version 4.3.2 (2023-10-31) -- "Eye Holes" 189s Copyright (C) 2023 The R Foundation for Statistical Computing 189s Platform: powerpc64le-unknown-linux-gnu (64-bit) 189s 189s R is free software and comes with ABSOLUTELY NO WARRANTY. 189s You are welcome to redistribute it under certain conditions. 189s Type 'license()' or 'licence()' for distribution details. 189s 189s R is a collaborative project with many contributors. 189s Type 'contributors()' for more information and 189s 'citation()' on how to cite R or R packages in publications. 189s 189s Type 'demo()' for some demos, 'help()' for on-line help, or 189s 'help.start()' for an HTML browser interface to help. 189s Type 'q()' to quit R. 189s 189s > # try bivariate cokriging; cross validate first variable 189s > library(sp) 189s > data(meuse) 189s > library(gstat) 190s > g=gstat(NULL, "log-zinc", log(zinc)~1, ~x+y, meuse, nmax=10) 190s > g=gstat(g, "log-lead", log(lead)~1, ~x+y, meuse, nmax=10) 190s > g=gstat(g, "log-copper", log(copper)~1, ~x+y, meuse, nmax=10) 190s > v=variogram(g) 190s > g=gstat(g, model=vgm(1, "Sph", 1000), fill.all=T) 190s > g=fit.lmc(v, g) 190s > g 190s data: 190s log-zinc : formula = log(zinc)`~`1 ; data dim = 155 x 12 nmax = 10 190s log-lead : formula = log(lead)`~`1 ; data dim = 155 x 12 nmax = 10 190s log-copper : formula = log(copper)`~`1 ; data dim = 155 x 12 nmax = 10 190s variograms: 190s model psill range 190s log-zinc Sph 0.7132435 1000 190s log-lead Sph 0.6133020 1000 190s log-copper Sph 0.3634211 1000 190s log-zinc.log-lead Sph 0.6367012 1000 190s log-zinc.log-copper Sph 0.4570044 1000 190s log-lead.log-copper Sph 0.3934910 1000 190s ~x + y 190s > set.seed(13131) 190s > summary(gstat.cv(g, remove.all=TRUE, nfold=5)) 190s Intrinsic Correlation found. Good. 190s [using ordinary cokriging] 190s Intrinsic Correlation found. Good. 190s [using ordinary cokriging] 190s Intrinsic Correlation found. Good. 190s [using ordinary cokriging] 190s Intrinsic Correlation found. Good. 190s [using ordinary cokriging] 190s Intrinsic Correlation found. Good. 190s [using ordinary cokriging] 190s log.zinc.pred log.zinc.var observed residual 190s Min. :4.779 Min. :0.05426 Min. :4.727 Min. :-1.317697 190s 1st Qu.:5.396 1st Qu.:0.10872 1st Qu.:5.288 1st Qu.:-0.230224 190s Median :5.858 Median :0.13745 Median :5.787 Median :-0.034374 190s Mean :5.895 Mean :0.15249 Mean :5.886 Mean :-0.009094 190s 3rd Qu.:6.367 3rd Qu.:0.18303 3rd Qu.:6.514 3rd Qu.: 0.244075 190s Max. :7.358 Max. :0.60571 Max. :7.517 Max. : 1.414147 190s zscore fold x y 190s Min. :-3.35764 Min. :1.000 Min. :178605 Min. :329714 190s 1st Qu.:-0.58683 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 190s Median :-0.10755 Median :3.000 Median :179991 Median :331633 190s Mean :-0.02766 Mean :2.852 Mean :180005 Mean :331635 190s 3rd Qu.: 0.70691 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 190s Max. : 3.43370 Max. :5.000 Max. :181390 Max. :333611 190s > summary(gstat.cv(g, remove.all=FALSE, nfold=5)) 190s Warning message: 190s In checkNames(value) : 190s attempt to set invalid names: this may lead to problems later on. See ?make.names 190s Intrinsic Correlation found. Good. 190s [using ordinary cokriging] 190s Intrinsic Correlation found. Good. 190s [using ordinary cokriging] 190s Intrinsic Correlation found. Good. 190s [using ordinary cokriging] 190s Intrinsic Correlation found. Good. 190s [using ordinary cokriging] 190s Intrinsic Correlation found. Good. 190s [using ordinary cokriging] 190s log.zinc.pred log.zinc.var observed residual 190s Min. :4.644 Min. :0.002371 Min. :4.727 Min. :-0.4190977 190s 1st Qu.:5.308 1st Qu.:0.004975 1st Qu.:5.288 1st Qu.:-0.0773273 190s Median :5.777 Median :0.005875 Median :5.787 Median : 0.0006165 190s Mean :5.883 Mean :0.006609 Mean :5.886 Mean : 0.0026164 190s 3rd Qu.:6.422 3rd Qu.:0.007419 3rd Qu.:6.514 3rd Qu.: 0.0825770 190s Max. :7.676 Max. :0.027247 Max. :7.517 Max. : 0.4659503 190s zscore fold x y 190s Min. :-4.793253 Min. :1.000 Min. :178605 Min. :329714 190s 1st Qu.:-1.080725 1st Qu.:2.000 1st Qu.:179371 1st Qu.:330762 190s Median : 0.007242 Median :3.000 Median :179991 Median :331633 190s Mean : 0.050487 Mean :2.974 Mean :180005 Mean :331635 190s 3rd Qu.: 1.117469 3rd Qu.:4.000 3rd Qu.:180630 3rd Qu.:332463 190s Max. : 6.475831 Max. :5.000 Max. :181390 Max. :333611 190s > 190s Warning message: 190s In checkNames(value) : 190s attempt to set invalid names: this may lead to problems later on. See ?make.names 190s BEGIN TEST cv3d.R 191s 191s R version 4.3.2 (2023-10-31) -- "Eye Holes" 191s Copyright (C) 2023 The R Foundation for Statistical Computing 191s Platform: powerpc64le-unknown-linux-gnu (64-bit) 191s 191s R is free software and comes with ABSOLUTELY NO WARRANTY. 191s You are welcome to redistribute it under certain conditions. 191s Type 'license()' or 'licence()' for distribution details. 191s 191s R is a collaborative project with many contributors. 191s Type 'contributors()' for more information and 191s 'citation()' on how to cite R or R packages in publications. 191s 191s Type 'demo()' for some demos, 'help()' for on-line help, or 191s 'help.start()' for an HTML browser interface to help. 191s Type 'q()' to quit R. 191s 191s > options(digits = 4) 191s > set.seed(1131) 191s > d = data.frame(x=runif(50),y=runif(50),z=runif(50),v=rnorm(50)) 191s > library(gstat) 191s > xx = krige.cv(v~1,~x+y+z,d,model=vgm(1,"Exp",1), verbose=F, set=list(debug=0)) 192s > summary(xx) 192s var1.pred var1.var observed residual 192s Min. :-1.163 Min. :0.116 Min. :-2.240 Min. :-2.1755 192s 1st Qu.:-0.571 1st Qu.:0.175 1st Qu.:-0.876 1st Qu.:-0.7881 192s Median :-0.201 Median :0.192 Median :-0.219 Median : 0.1175 192s Mean :-0.165 Mean :0.208 Mean :-0.142 Mean : 0.0233 192s 3rd Qu.: 0.161 3rd Qu.:0.240 3rd Qu.: 0.500 3rd Qu.: 0.8508 192s Max. : 1.085 Max. :0.426 Max. : 1.857 Max. : 2.5224 192s zscore fold x y 192s Min. :-5.168 Min. : 1.0 Min. :0.0068 Min. :0.0034 192s 1st Qu.:-1.875 1st Qu.:13.2 1st Qu.:0.2397 1st Qu.:0.2466 192s Median : 0.245 Median :25.5 Median :0.4867 Median :0.4525 192s Mean : 0.017 Mean :25.5 Mean :0.4997 Mean :0.4969 192s 3rd Qu.: 2.020 3rd Qu.:37.8 3rd Qu.:0.7473 3rd Qu.:0.7394 192s Max. : 7.354 Max. :50.0 Max. :0.9875 Max. :0.9872 192s z 192s Min. :0.0016 192s 1st Qu.:0.1865 192s Median :0.4485 192s Mean :0.4714 192s 3rd Qu.:0.7240 192s Max. :0.9942 192s > 192s BEGIN TEST fit.R 192s 192s R version 4.3.2 (2023-10-31) -- "Eye Holes" 192s Copyright (C) 2023 The R Foundation for Statistical Computing 192s Platform: powerpc64le-unknown-linux-gnu (64-bit) 192s 192s R is free software and comes with ABSOLUTELY NO WARRANTY. 192s You are welcome to redistribute it under certain conditions. 192s Type 'license()' or 'licence()' for distribution details. 192s 192s R is a collaborative project with many contributors. 192s Type 'contributors()' for more information and 192s 'citation()' on how to cite R or R packages in publications. 192s 192s Type 'demo()' for some demos, 'help()' for on-line help, or 192s 'help.start()' for an HTML browser interface to help. 192s Type 'q()' to quit R. 192s 192s > library(sp) 193s > data(meuse) 193s > library(gstat) 193s > v=variogram(log(zinc)~1,~x+y,meuse,cutoff=500,wi=100) 194s > v$gamma=c(0.5,1,2,3,3) 194s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=TRUE) 194s model psill range 194s 1 Nug 0.000000Warning message: 194s In fit.variogram(v, vgm(1, "Sph", 300, 0), warn.if.neg = TRUE) : 194s partial sill or nugget fixed at zero value 194s 0.00 194s 2 Sph 7.878195 1567.77 194s > fit.variogram(v, vgm(1, "Sph", 300, 0),warn.if.neg=FALSE) 194s model psill range 194s 1 Nug 0.000000 0.00 194s 2 Sph 7.878195 1567.77 194s > 194s BEGIN TEST krige0.R 194s 194s R version 4.3.2 (2023-10-31) -- "Eye Holes" 194s Copyright (C) 2023 The R Foundation for Statistical Computing 194s Platform: powerpc64le-unknown-linux-gnu (64-bit) 194s 194s R is free software and comes with ABSOLUTELY NO WARRANTY. 194s You are welcome to redistribute it under certain conditions. 194s Type 'license()' or 'licence()' for distribution details. 194s 194s R is a collaborative project with many contributors. 194s Type 'contributors()' for more information and 194s 'citation()' on how to cite R or R packages in publications. 194s 194s Type 'demo()' for some demos, 'help()' for on-line help, or 194s 'help.start()' for an HTML browser interface to help. 194s Type 'q()' to quit R. 194s 194s > # test -- load data: 194s > library(sp) 194s > data(meuse) 194s > coordinates(meuse) = ~x+y 194s > data(meuse.grid) 194s > gridded(meuse.grid) = ~x+y 194s > 194s > library(gstat) 195s > # test -- idw 195s > meuse.grid$idw <- idw0(zinc~1, meuse, meuse.grid)[,1] 195s > x <- idw(zinc~1, meuse, meuse.grid) 195s [inverse distance weighted interpolation] 195s > all.equal(x$var1.pred, meuse.grid$idw) 195s [1] TRUE 195s > spplot(meuse.grid["idw"],col.regions=bpy.colors()) 195s > v = vgm(1, "Exp", 500) 195s > # test sk: 195s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, beta = 500, computeVar = TRUE) 195s > rownames(x0$pred)=NULL 195s > x <- krige(zinc~1, meuse, meuse.grid, v, beta = 500) 195s [using simple kriging] 195s > all.equal(x$var1.pred, x0$pred[,1]) 195s [1] TRUE 195s > all.equal(x$var1.var, x0$var) 195s [1] TRUE 195s > # test ok: 195s > x0 <- krige0(zinc~1, meuse, meuse.grid, v, computeVar = TRUE) 196s > rownames(x0$pred)=NULL 196s > names(x0$var)=NULL 196s > x <- krige(zinc~1, meuse, meuse.grid, v) 196s [using ordinary kriging] 196s > all.equal(x$var1.pred, x0$pred[,1]) 196s [1] TRUE 196s > all.equal(x$var1.var, x0$var) 196s [1] TRUE 196s > # test uk: 196s > x0 <- krige0(zinc~sqrt(dist), meuse, meuse.grid, v, computeVar = TRUE) 196s > rownames(x0$pred)=NULL 196s > names(x0$var)=NULL 196s > x <- krige(zinc~sqrt(dist), meuse, meuse.grid, v) 196s [using universal kriging] 196s > all.equal(x$var1.pred, x0$pred[,1]) 196s [1] TRUE 196s > all.equal(x$var1.var, x0$var) 196s [1] TRUE 196s > 196s BEGIN TEST line.R 196s 196s R version 4.3.2 (2023-10-31) -- "Eye Holes" 196s Copyright (C) 2023 The R Foundation for Statistical Computing 196s Platform: powerpc64le-unknown-linux-gnu (64-bit) 196s 196s R is free software and comes with ABSOLUTELY NO WARRANTY. 196s You are welcome to redistribute it under certain conditions. 196s Type 'license()' or 'licence()' for distribution details. 196s 196s R is a collaborative project with many contributors. 196s Type 'contributors()' for more information and 196s 'citation()' on how to cite R or R packages in publications. 196s 196s Type 'demo()' for some demos, 'help()' for on-line help, or 196s 'help.start()' for an HTML browser interface to help. 196s Type 'q()' to quit R. 196s 196s > options(digits=5) 196s > library(sp) 196s > data(meuse.grid) 196s > gridded(meuse.grid) = ~x+y 197s > data(meuse) 197s > coordinates(meuse) = ~x+y 197s > 197s > # choose arbitrary line over the grid: 197s > image(meuse.grid["dist"],axes=T) 197s > pp = rbind(c(180000,331000),c(180000,332000),c(181000,333500)) 197s > Sl = SpatialLines(list(Lines(list(Line(pp)), "a"))) 197s > plot(Sl,add=T,col='green') 197s > 197s > # use the default spsample arguments of predict.gstat: 197s > pts=spsample(Sl,n=500,'regular',offset=c(.5,.5)) 197s > plot(pts, pch=3, cex=.2, add=T) 197s > 197s > library(gstat) 197s > v = vgm(.6, "Sph", 900, .06) 197s > out1 = krige(log(zinc)~1, meuse, Sl, v) 197s [using ordinary kriging] 197s > out1 197s An object of class "SpatialLinesDataFrame" 197s Slot "data": 197s x y var1.pred var1.var 197s a 180333 332167 6.1618 0.008025 197s 197s Slot "lines": 197s [[1]] 197s An object of class "Lines" 197s Slot "Lines": 197s [[1]] 197s An object of class "Line" 197s Slot "coords": 197s [,1] [,2] 197s [1,] 180000 331000 197s [2,] 180000 332000 197s [3,] 181000 333500 197s 197s 197s 197s Slot "ID": 197s [1] "a" 197s 197s 197s 197s Slot "bbox": 197s min max 197s x 180000 181000 197s y 331000 333500 197s 197s Slot "proj4string": 197s Coordinate Reference System: 197s Deprecated Proj.4 representation: NA 197s 197s > 197s > points(180333,332167,pch=3,cex=2) 197s > 197s > # use the same line as block discretization, and predict for (0,0) 197s > # (because the block discretizing points are not centered) 197s > out2 = krige(log(zinc)~1, meuse, SpatialPoints(matrix(0,1,2)), v, block=coordinates(pts)) 197s [using ordinary kriging] 197s > out2 197s coordinates var1.pred var1.var 197s 1 (0, 0) 6.1618 0.008025 197s > 197s > compare.krigingLines = function(formula, data, newdata, model) { 197s + out1 = krige(formula, data, newdata, model) 197s + pts = spsample(newdata, n=500, 'regular', offset=.5) 197s + out2 = krige(formula, data, SpatialPoints(matrix(0,1,2)), model, block = coordinates(pts)) 197s + print("difference:") 197s + as.data.frame(out1)[3:4]- as.data.frame(out2)[3:4] 197s + } 197s > 197s > compare.krigingLines(log(zinc)~1, meuse, Sl, v) 197s [using ordinary kriging] 197s [using ordinary kriging] 197s [1] "difference:" 197s var1.pred var1.var 197s a 0 0 197s > 197s > # one line, consisting of two line segments: 197s > pp2 = rbind(c(181000,333500),c(181000,332500)) 197s > Sl2 = SpatialLines(list(Lines(list(Line(pp),Line(pp2)), "a"))) 197s > krige(log(zinc)~1, meuse, Sl2, v) 197s [using ordinary kriging] 197s An object of class "SpatialLinesDataFrame" 197s Slot "data": 197s x y var1.pred var1.var 197s a 180667 332583 6.0424 0.0053191 197s 197s Slot "lines": 197s [[1]] 197s An object of class "Lines" 197s Slot "Lines": 197s [[1]] 197s An object of class "Line" 197s Slot "coords": 197s [,1] [,2] 197s [1,] 180000 331000 197s [2,] 180000 332000 197s [3,] 181000 333500 197s 197s 197s [[2]] 197s An object of class "Line" 197s Slot "coords": 197s [,1] [,2] 197s [1,] 181000 333500 197s [2,] 181000 332500 197s 197s 197s 197s Slot "ID": 197s [1] "a" 197s 197s 197s 197s Slot "bbox": 197s min max 197s x 180000 181000 197s y 331000 333500 197s 197s Slot "proj4string": 197s Coordinate Reference System: 197s Deprecated Proj.4 representation: NA 197s 197s > compare.krigingLines(log(zinc)~1, meuse, Sl2, v) 197s [using ordinary kriging] 197s [using ordinary kriging] 197s [1] "difference:" 197s var1.pred var1.var 197s a 0 0 197s > 197s > # two seperate line segments: 197s > Sl3 = SpatialLines(list(Lines(list(Line(pp)), "a"),Lines(list(Line(pp2)),"b"))) 197s > krige(log(zinc)~1, meuse, Sl3, v) 197s [using ordinary kriging] 197s An object of class "SpatialLinesDataFrame" 197s Slot "data": 197s x y var1.pred var1.var 197s a 180333 332167 6.1618 0.008025 197s b 181000 333000 5.7060 0.011043 197s 197s Slot "lines": 197s [[1]] 197s An object of class "Lines" 197s Slot "Lines": 197s [[1]] 197s An object of class "Line" 197s Slot "coords": 197s [,1] [,2] 197s [1,] 180000 331000 197s [2,] 180000 332000 197s [3,] 181000 333500 197s 197s 197s 197s Slot "ID": 197s [1] "a" 197s 197s 197s [[2]] 197s An object of class "Lines" 197s Slot "Lines": 197s [[1]] 197s An object of class "Line" 197s Slot "coords": 197s [,1] [,2] 197s [1,] 181000 333500 197s [2,] 181000 332500 197s 197s 197s 197s Slot "ID": 197s [1] "b" 197s 197s 197s 197s Slot "bbox": 197s min max 197s x 180000 181000 197s y 331000 333500 197s 197s Slot "proj4string": 197s Coordinate Reference System: 197s Deprecated Proj.4 representation: NA 197s 197s > 197s BEGIN TEST merge.R 198s 198s R version 4.3.2 (2023-10-31) -- "Eye Holes" 198s Copyright (C) 2023 The R Foundation for Statistical Computing 198s Platform: powerpc64le-unknown-linux-gnu (64-bit) 198s 198s R is free software and comes with ABSOLUTELY NO WARRANTY. 198s You are welcome to redistribute it under certain conditions. 198s Type 'license()' or 'licence()' for distribution details. 198s 198s R is a collaborative project with many contributors. 198s Type 'contributors()' for more information and 198s 'citation()' on how to cite R or R packages in publications. 198s 198s Type 'demo()' for some demos, 'help()' for on-line help, or 198s 'help.start()' for an HTML browser interface to help. 198s Type 'q()' to quit R. 198s 198s > options(digits=6) 198s > # illustrates the use of merge, for merging parameters accross variables: 198s > # Z1=m+e1(s) 198s > # Z2=m+e2(s) 198s > # Z1 and Z2 each have a different variogram, but share the parameter m 198s > # see documentation of gstat() function 198s > library(gstat) 198s > d1 = data.frame(x=c(0,2),y=c(0,0),z=c(0,1)) 198s > d2 = data.frame(x=c(0,2),y=c(2,2),z=c(4,5)) 198s > g = gstat(NULL,"d1", z~1,~x+y,d1,model=vgm(1, "Exp", 1)) 198s > g = gstat(g,"d2", z~1,~x+y,d2,model=vgm(1, "Exp", 1), merge=c("d1","d2")) 198s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 198s > predict(g, data.frame(x=1,y=1), debug = 32) 199s Intrinsic Correlation found. Good. 199s [using ordinary cokriging] 199s we're at location X: 1 Y: 1 Z: 0 199s zero block size 199s we're at point X: 1 Y: 1 Z: 0 199s 199s # X: 199s #Matrix: 4 by 1 199s rbind( 199s c( 1.000000), # row 1 199s c( 1.000000), # row 2 199s c( 1.000000), # row 3 199s c( 1.000000) # row 4 199s ) 199s [using generalized covariances: max_val - semivariance()] 199s # Covariances (x_i, x_j) matrix C (upper triangle): 199s #Matrix: 4 by 4 199s rbind( 199s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 199s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 199s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 199s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 199s ) 199s 199s # glm->C, Choleski decomposed:: 199s #Matrix: 4 by 4 199s rbind( 199s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 199s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 199s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 199s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 199s ) 199s 199s # X'C-1 X: 199s #Matrix: 1 by 1 199s rbind( 199s c( 3.245289) # row 1 199s ) 199s 199s # beta: 199s #Vector: dim: 1 199s c( 2.500000) 199s # Cov(beta), (X'C-1 X)-1: 199s #Matrix: 1 by 1 199s rbind( 199s c( 0.308139) # row 1 199s ) 199s 199s # Corr(beta): 199s #Matrix: 1 by 1 199s rbind( 199s c( 1.000000) # row 1 199s ) 199s 199s # X0 (X values at prediction location x0): 199s #Matrix: 1 by 2 199s rbind( 199s c( 1.000000, 1.000000) # row 1 199s ) 199s 199s # BLUE(mu), E(y(x0)) = X0'beta: 199s #Vector: dim: 2 199s c( 2.500000, 2.500000) 199s # Covariances (x_i, x_0), C0: 199s #Matrix: 4 by 2 199s rbind( 199s c( 0.243117, 0.121558), # row 1 199s c( 0.243117, 0.121558), # row 2 199s c( 0.121558, 0.243117), # row 3 199s c( 0.121558, 0.243117) # row 4 199s ) 199s 199s # C-1 C0: 199s #Matrix: 4 by 2 199s rbind( 199s c( 0.206482, 0.089387), # row 1 199s c( 0.206482, 0.089387), # row 2 199s c( 0.089387, 0.206482), # row 3 199s c( 0.089387, 0.206482) # row 4 199s ) 199s 199s # [a] Cov_ij(B,B) or Cov_ij(0,0): 199s #Matrix: 2 by 2 199s rbind( 199s c( 1.000000, 0.500000), # row 1 199s c( 0.500000, 1.000000) # row 2 199s ) 199s 199s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 199s #Matrix: 2 by 2 199s rbind( 199s c( 0.051360, 0.051360), # row 1 199s c( 0.051360, 0.051360) # row 2 199s ) 199s 199s # [b] c0'C-1 c0: 199s #Matrix: 2 by 2 199s rbind( 199s c( 0.122130, 0.093662), # row 1 199s c( 0.093662, 0.122130) # row 2 199s ) 199s 199s # Best Linear Unbiased Predictor: 199s #Vector: dim: 2 199s c( 2.031619, 2.968381) 199s # MSPE ([a]-[b]+[c]): 199s #Matrix: 2 by 2 199s rbind( 199s c( 0.929230, 0.457698), # row 1 199s c( 0.457698, 0.929230) # row 2 199s ) 199s 199s # kriging weights: 199s #Matrix: 4 by 2 199s rbind( 199s c( 0.308548, 0.191452), # row 1 199s c( 0.308548, 0.191452), # row 2 199s c( 0.191452, 0.308548), # row 3 199s c( 0.191452, 0.308548) # row 4 199s ) 199s 199s 199s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 199s 1 1 1 2.03162 0.92923 2.96838 0.92923 0.457698 199s > 199s > # Z1 and Z2 share a regression slope: 199s > g = gstat(NULL,"d1", z~x,~x+y,d1,model=vgm(1, "Exp", 1)) 199s > g = gstat(g,"d2", z~x,~x+y,d2,model=vgm(1, "Exp", 1), 199s + merge=list(c("d1",2,"d2",2))) 199s > g = gstat(g, c("d1", "d2"), model = vgm(0.5, "Exp", 1)) 199s > predict(g, data.frame(x=1,y=1), debug = 32) 199s Intrinsic Correlation found. Good. 199s [using universal cokriging] 199s we're at location X: 1 Y: 1 Z: 0 199s zero block size 199s we're at point X: 1 Y: 1 Z: 0 199s 199s # X: 199s #Matrix: 4 by 3 199s rbind( 199s c( 1.000000, 0.000000, 0.000000), # row 1 199s c( 1.000000, 2.000000, 0.000000), # row 2 199s c( 0.000000, 0.000000, 1.000000), # row 3 199s c( 0.000000, 2.000000, 1.000000) # row 4 199s ) 199s [using generalized covariances: max_val - semivariance()] 199s # Covariances (x_i, x_j) matrix C (upper triangle): 199s #Matrix: 4 by 4 199s rbind( 199s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 199s c( 0.135335, 1.000000, 0.029553, 0.067668), # row 2 199s c( 0.067668, 0.029553, 1.000000, 0.135335), # row 3 199s c( 0.029553, 0.067668, 0.135335, 1.000000) # row 4 199s ) 199s 199s # glm->C, Choleski decomposed:: 199s #Matrix: 4 by 4 199s rbind( 199s c( 1.000000, 0.135335, 0.067668, 0.029553), # row 1 199s c( 0.000000, 0.990800, 0.020584, 0.064259), # row 2 199s c( 0.000000, 0.000000, 0.997496, 0.132344), # row 3 199s c( 0.000000, 0.000000, 0.000000, 0.988677) # row 4 199s ) 199s 199s # X'C-1 X: 199s #Matrix: 3 by 3 199s rbind( 199s c( 1.774607, 1.622645, -0.151962), # row 1 199s c( 1.622645, 7.676050, 1.622645), # row 2 199s c(-0.151962, 1.622645, 1.774607) # row 3 199s ) 199s 199s # beta: 199s #Vector: dim: 3 199s c( 0.000000, 0.500000, 4.000000) 199s # Cov(beta), (X'C-1 X)-1: 199s #Matrix: 3 by 3 199s rbind( 199s c( 0.793363, -0.225695, 0.274305), # row 1 199s c(-0.225695, 0.225695, -0.225695), # row 2 199s c( 0.274305, -0.225695, 0.793363) # row 3 199s ) 199s 199s # Corr(beta): 199s #Matrix: 3 by 3 199s rbind( 199s c( 1.000000, -0.533366, 0.345750), # row 1 199s c(-0.533366, 1.000000, -0.533366), # row 2 199s c( 0.345750, -0.533366, 1.000000) # row 3 199s ) 199s 199s # X0 (X values at prediction location x0): 199s #Matrix: 3 by 2 199s rbind( 199s c( 1.000000, 0.000000), # row 1 199s c( 1.000000, 1.000000), # row 2 199s c( 0.000000, 1.000000) # row 3 199s ) 199s 199s # BLUE(mu), E(y(x0)) = X0'beta: 199s #Vector: dim: 2 199s c( 0.500000, 4.500000) 199s # Covariances (x_i, x_0), C0: 199s #Matrix: 4 by 2 199s rbind( 199s c( 0.243117, 0.121558), # row 1 199s c( 0.243117, 0.121558), # row 2 199s c( 0.121558, 0.243117), # row 3 199s c( 0.121558, 0.243117) # row 4 199s ) 199s 199s # C-1 C0: 199s #Matrix: 4 by 2 199s rbind( 199s c( 0.206482, 0.089387), # row 1 199s c( 0.206482, 0.089387), # row 2 199s c( 0.089387, 0.206482), # row 3 199s c( 0.089387, 0.206482) # row 4 199s ) 199s 199s # [a] Cov_ij(B,B) or Cov_ij(0,0): 199s #Matrix: 2 by 2 199s rbind( 199s c( 1.000000, 0.500000), # row 1 199s c( 0.500000, 1.000000) # row 2 199s ) 199s 199s # [c] (x0-X'C-1 c0)'(X'C-1 X)-1(x0-X'C-1 c0): 199s #Matrix: 2 by 2 199s rbind( 199s c( 0.203564, -0.100844), # row 1 199s c(-0.100844, 0.203564) # row 2 199s ) 199s 199s # [b] c0'C-1 c0: 199s #Matrix: 2 by 2 199s rbind( 199s c( 0.122130, 0.093662), # row 1 199s c( 0.093662, 0.122130) # row 2 199s ) 199s 199s # Best Linear Unbiased Predictor: 199s #Vector: dim: 2 199s c( 0.500000, 4.500000) 199s # MSPE ([a]-[b]+[c]): 199s #Matrix: 2 by 2 199s rbind( 199s c( 1.081434, 0.305494), # row 1 199s c( 0.305494, 1.081434) # row 2 199s ) 199s 199s # kriging weights: 199s #Matrix: 4 by 2 199s rbind( 199s c( 0.500000, 0.000000), # row 1 199s c( 0.500000, 0.000000), # row 2 199s c( 0.000000, 0.500000), # row 3 199s c( 0.000000, 0.500000) # row 4 199s ) 199s 199s 199s x y d1.pred d1.var d2.pred d2.var cov.d1.d2 199s 1 1 1 0.5 1.08143 4.5 1.08143 0.305494 199s > 199s BEGIN TEST na.action.R 199s 199s R version 4.3.2 (2023-10-31) -- "Eye Holes" 199s Copyright (C) 2023 The R Foundation for Statistical Computing 199s Platform: powerpc64le-unknown-linux-gnu (64-bit) 199s 199s R is free software and comes with ABSOLUTELY NO WARRANTY. 199s You are welcome to redistribute it under certain conditions. 199s Type 'license()' or 'licence()' for distribution details. 199s 199s R is a collaborative project with many contributors. 199s Type 'contributors()' for more information and 199s 'citation()' on how to cite R or R packages in publications. 199s 199s Type 'demo()' for some demos, 'help()' for on-line help, or 199s 'help.start()' for an HTML browser interface to help. 199s Type 'q()' to quit R. 199s 199s > library(sp) 199s > 199s > data(meuse) 199s > data(meuse.grid) 199s > 199s > set.seed(13131) # reproduce results 199s > 199s > # select 10 random rows; 199s > # create two missing values in the coordinates: 199s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 199s > m[c(2,8), "x"] = NA 199s > 199s > library(gstat) 199s > ## this is not allowed anymore: 199s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.pass)) 199s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 199s missing values in object 199s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.omit)) 199s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 199s missing values in object 199s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.exclude)) 199s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 199s missing values in object 200s > try(krige(log(zinc)~1,~x+y,meuse,m, na.action = na.fail)) 200s Error in na.fail.default(structure(list(x = c(179220, NA, 178740, 179300, : 200s missing values in object 200s > 200s > # select 10 random rows; 200s > # create two missing values in the regressor variable: 200s > m = meuse.grid[sample(nrow(meuse.grid), 10), ] 200s > m[c(3,7), "dist"] = NA 200s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.pass) 200s [ordinary or weighted least squares prediction] 200s x y var1.pred var1.var 200s 1 178860 330860 6.530134 0.2415196 200s 2 180260 331860 5.389567 0.2406041 200s 3 180100 331860 NA NA 200s 4 180460 331820 5.213370 0.2417197 200s 5 179660 330580 5.550859 0.2398778 200s 6 179740 330300 6.108648 0.2395392 200s 7 180220 330660 NA NA 200s 8 178580 329820 6.533801 0.2415453 200s 9 180100 331900 5.580264 0.2397758 200s 10 180780 331900 5.095967 0.2426499 200s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.omit) 200s [ordinary or weighted least squares prediction] 200s x y var1.pred var1.var 200s 1877 178860 330860 6.530134 0.2415196 200s 1015 180260 331860 5.389567 0.2406041 200s 1056 180460 331820 5.213370 0.2417197 200s 2199 179660 330580 5.550859 0.2398778 200s 2556 179740 330300 6.108648 0.2395392 200s 2985 178580 329820 6.533801 0.2415453 200s 975 180100 331900 5.580264 0.2397758 200s 992 180780 331900 5.095967 0.2426499 200s > krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.exclude) 200s [ordinary or weighted least squares prediction] 200s x y var1.pred var1.var 200s 1877 178860 330860 6.530134 0.2415196 200s 1015 180260 331860 5.389567 0.2406041 200s 1056 180460 331820 5.213370 0.2417197 200s 2199 179660 330580 5.550859 0.2398778 200s 2556Error in na.fail.default(structure(list(dist = c(0.00135803, 0.423804, : 200s missing values in object 200s 179740 330300 6.108648 0.2395392 200s 2985 178580 329820 6.533801 0.2415453 200s 975 180100 331900 5.580264 0.2397758 200s 992 180780 331900 5.095967 0.2426499 200s > try(krige(log(zinc)~dist,~x+y,meuse,m, na.action = na.fail)) 200s > 200s BEGIN TEST rings.R 200s 200s R version 4.3.2 (2023-10-31) -- "Eye Holes" 200s Copyright (C) 2023 The R Foundation for Statistical Computing 200s Platform: powerpc64le-unknown-linux-gnu (64-bit) 200s 200s R is free software and comes with ABSOLUTELY NO WARRANTY. 200s You are welcome to redistribute it under certain conditions. 200s Type 'license()' or 'licence()' for distribution details. 200s 200s R is a collaborative project with many contributors. 200s Type 'contributors()' for more information and 200s 'citation()' on how to cite R or R packages in publications. 200s 200s Type 'demo()' for some demos, 'help()' for on-line help, or 200s 'help.start()' for an HTML browser interface to help. 200s Type 'q()' to quit R. 200s 200s > library(sp) 200s > library(gstat) 201s > set.seed(13331) 201s > 201s > x = runif(10) 201s > y = runif(10) 201s > z = rnorm(10) 201s > d = data.frame(x=x,y=y,z=z) 201s > bl = c(1,1) 201s > 201s > nd = data.frame(x=.5, y=.5) 201s > 201s > # single block: 201s > library(sp) 201s > coordinates(d) = ~x+y 201s > nd = SpatialPoints(nd) 201s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 201s + set = list(nb=4)) 201s [using ordinary kriging] 201s > 201s > ring = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 201s > r1 = SpatialPolygons(list(Polygons(list(Polygon(ring)), ID = "xx"))) 201s > a = data.frame(a = 1, b = 2) 201s > rownames(a) = "xx" 201s > r1df = SpatialPolygonsDataFrame(r1, a) 201s > 201s > g = gstat(formula=z~1, data=d, model=vgm(1, "Exp", 1)) 201s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 201s > yy = predict(g, r1df, block = bl, sps.args = args) 201s [using ordinary kriging] 201s > 201s > xx = as.data.frame(xx) 201s > yy = as.data.frame(yy) 201s > row.names(xx) = row.names(yy) 201s > print(all.equal(xx,yy)) 201s [1] TRUE 201s > 201s > ## multiple blocks of equal size: 201s > nd = data.frame(x= 0:4 + .5, y=rep(.5,5)) 201s > nd = SpatialPoints(nd) 201s > xx = krige(z~1, d, nd, model=vgm(1, "Exp", 1), block = bl, 201s + set = list(nb=4)) 201s [using ordinary kriging] 201s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 201s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 201s > ring2 = cbind(c(2+0,2+bl[1],2+bl[1],2+0,2+0), c(0,0,bl[2],bl[2],0)) 201s > ring3 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 201s > ring4 = cbind(c(4+0,4+bl[1],4+bl[1],4+0,4+0), c(0,0,bl[2],bl[2],0)) 201s > r1 = SpatialPolygons(list( 201s + Polygons(list(Polygon(ring0)), ID = "x0"), 201s + Polygons(list(Polygon(ring1)), ID = "x1"), 201s + Polygons(list(Polygon(ring2)), ID = "x2"), 201s + Polygons(list(Polygon(ring3)), ID = "x3"), 201s + Polygons(list(Polygon(ring4)), ID = "x4") 201s + )) 201s > df = data.frame(a=rep(1,5), b= rep(1,5)) 201s > rownames(df) = c("x0", "x1", "x2", "x3", "x4") 201s > r1df = SpatialPolygonsDataFrame(r1, df) 201s > 201s > yy = predict(g, r1, block = bl, sps.args = args) 201s [using ordinary kriging] 201s > xx = as.data.frame(xx) 201s > yy = as.data.frame(yy) 201s > row.names(xx) = row.names(yy) 201s > all.equal(xx, yy) 201s [1] TRUE 201s > 201s > ## multiple blocks of equal size: 201s > args = list(type = "regular", cellsize=.25, offset=c(0.5,0.5), n=16) 201s > yy = predict(g, r1, block = bl, sps.args = args) 201s [using ordinary kriging] 201s > xx = as.data.frame(xx) 201s > yy = as.data.frame(yy) 201s > row.names(xx) = row.names(yy) 201s > print(all.equal(xx, yy)) 201s [1] TRUE 201s > 201s > ## multiple blocks of varying size: 201s > nd = data.frame(x=c(0.5, 2, 4.5), y=c(0.5, 1, 1.5)) 201s > nd = SpatialPoints(nd) 201s > bl = c(1,1) 201s > ring0 = cbind(c(0,bl[1],bl[1],0,0), c(0,0,bl[2],bl[2],0)) 201s > xx1 = krige(z~1, d, nd[1], model=vgm(1, "Exp", 1), block = bl, 201s + set = list(nb=4)) 201s [using ordinary kriging] 201s > bl = c(2,2) 201s > ring1 = cbind(c(1+0,1+bl[1],1+bl[1],1+0,1+0), c(0,0,bl[2],bl[2],0)) 201s > xx2 = krige(z~1, d, nd[2], model=vgm(1, "Exp", 1), block = bl, 201s + set = list(nb=4)) 201s [using ordinary kriging] 201s > bl = c(3,3) 201s > ring2 = cbind(c(3+0,3+bl[1],3+bl[1],3+0,3+0), c(0,0,bl[2],bl[2],0)) 201s > xx3 = krige(z~1, d, nd[3], model=vgm(1, "Exp", 1), block = bl, 201s + set = list(nb=4)) 201s [using ordinary kriging] 201s > r1 = SpatialPolygons(list( 201s + Polygons(list(Polygon(ring0)), ID = "x0"), 201s + Polygons(list(Polygon(ring1)), ID = "x1"), 201s + Polygons(list(Polygon(ring2)), ID = "x2") 201s + )) 201s > df = data.frame(a = rep(1,3), b = rep(1,3)) 201s > rownames(df) = c("x0", "x1", "x2") 201s > r1df = SpatialPolygonsDataFrame(r1, df) 201s > 201s > args = list(type = "regular", n=16, offset=c(0.5,0.5)) 201s > yy = predict(g, r1df, block = bl, sps.args = args) 201s [using ordinary kriging] 201s > xx = rbind(as.data.frame(xx1), as.data.frame(xx2), as.data.frame(xx3)) 201s > row.names(xx) = 1:3 201s > xx = as.data.frame(xx) 201s > yy = as.data.frame(yy) 201s > row.names(xx) = row.names(yy) 201s > print(all.equal(xx, yy)) 201s [1] TRUE 201s > 201s BEGIN TEST sim.R 201s 201s R version 4.3.2 (2023-10-31) -- "Eye Holes" 201s Copyright (C) 2023 The R Foundation for Statistical Computing 201s Platform: powerpc64le-unknown-linux-gnu (64-bit) 201s 201s R is free software and comes with ABSOLUTELY NO WARRANTY. 201s You are welcome to redistribute it under certain conditions. 201s Type 'license()' or 'licence()' for distribution details. 201s 201s R is a collaborative project with many contributors. 201s Type 'contributors()' for more information and 201s 'citation()' on how to cite R or R packages in publications. 201s 201s Type 'demo()' for some demos, 'help()' for on-line help, or 201s 'help.start()' for an HTML browser interface to help. 201s Type 'q()' to quit R. 201s 201s > options(digits=6) 201s > library(sp) 202s > data(meuse) 202s > set.seed(158229572) 202s > new.locs <- data.frame(x = c(181170, 180310, 180205, 178673, 178770, 178270), 202s + y = c(333250, 332189, 331707, 330066, 330675, 331075)) 202s > library(gstat) 202s > krige(zinc ~ 1, ~ x + y, meuse, newdata = new.locs, 202s + model = vgm(1.34e5, "Sph", 800, nug = 2.42e4), 202s + block = c(40,40), nmax = 40, nsim = 10) 202s drawing 10 GLS realisations of beta... 202s [using conditional Gaussian simulation] 202s x y sim1 sim2 sim3 sim4 sim5 sim6 sim7 202s 1 181170 333250 267.385 27.5686 428.144 381.576 151.119 175.890 293.273 202s 2 180310 332189 429.437 659.6579 564.023 611.666 612.756 619.791 771.961 202s 3 180205 331707 205.978 412.7276 271.827 380.349 169.488 369.822 266.026 202s 4 178673 330066 117.479 684.0663 399.148 585.096 606.396 867.866 807.634 202s 5 178770 330675 780.072 837.4628 682.690 911.052 600.984 783.019 749.476 202s 6 178270 331075 1025.778 1582.0269 614.235 332.377 660.228 589.447 972.018 202s sim8 sim9 sim10 202s 1 294.107 113.347 279.991 202s 2 776.498 724.160 901.692 202s 3 338.021 630.244 140.272 202s 4 127.301 957.242 444.007 202s 5 533.773 748.144 623.960 202s 6 1084.170 537.604 -214.972 202s > 202s BEGIN TEST stars.R 203s 203s R version 4.3.2 (2023-10-31) -- "Eye Holes" 203s Copyright (C) 2023 The R Foundation for Statistical Computing 203s Platform: powerpc64le-unknown-linux-gnu (64-bit) 203s 203s R is free software and comes with ABSOLUTELY NO WARRANTY. 203s You are welcome to redistribute it under certain conditions. 203s Type 'license()' or 'licence()' for distribution details. 203s 203s R is a collaborative project with many contributors. 203s Type 'contributors()' for more information and 203s 'citation()' on how to cite R or R packages in publications. 203s 203s Type 'demo()' for some demos, 'help()' for on-line help, or 203s 'help.start()' for an HTML browser interface to help. 203s Type 'q()' to quit R. 203s 203s > Sys.setenv(TZ = "UTC") 203s > 203s > # 0. using sp: 203s > 203s > suppressPackageStartupMessages(library(sp)) 203s > demo(meuse, ask = FALSE) 203s 203s 203s demo(meuse) 203s ---- ~~~~~ 203s 203s > require(sp) 203s 203s > crs = CRS("EPSG:28992") 203s 203s > data("meuse") 203s 203s > coordinates(meuse) <- ~x+y 203s 203s > proj4string(meuse) <- crs 203s 203s > data("meuse.grid") 203s 203s > coordinates(meuse.grid) <- ~x+y 203s 203s > gridded(meuse.grid) <- TRUE 203s 203s > proj4string(meuse.grid) <- crs 203s 203s > data("meuse.riv") 203s 203s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 203s 203s > proj4string(meuse.riv) <- crs 203s 203s > data("meuse.area") 203s 203s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 203s 203s > proj4string(meuse.area) <- crs 203s > suppressPackageStartupMessages(library(gstat)) 204s > v = variogram(log(zinc)~1, meuse) 204s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 204s model psill range 204s 1 Nug 0.05066243 0.0000 204s 2 Sph 0.59060780 897.0209 204s > k_sp = krige(log(zinc)~1, meuse[-(1:5),], meuse[1:5,], v.fit) 204s [using ordinary kriging] 204s > k_sp_grd = krige(log(zinc)~1, meuse, meuse.grid, v.fit) 204s [using ordinary kriging] 204s > 204s > # 1. using sf: 204s > suppressPackageStartupMessages(library(sf)) 204s Warning message: 204s package ‘sf’ was built under R version 4.3.3 204s > demo(meuse_sf, ask = FALSE, echo = FALSE) 204s > # reloads meuse as data.frame, so 204s > demo(meuse, ask = FALSE) 204s 204s 204s demo(meuse) 204s ---- ~~~~~ 204s 204s > require(sp) 204s 204s > crs = CRS("EPSG:28992") 204s 204s > data("meuse") 204s 204s > coordinates(meuse) <- ~x+y 204s 204s > proj4string(meuse) <- crs 204s 204s > data("meuse.grid") 204s 204s > coordinates(meuse.grid) <- ~x+y 204s 204s > gridded(meuse.grid) <- TRUE 204s 204s > proj4string(meuse.grid) <- crs 204s 204s > data("meuse.riv") 204s 204s > meuse.riv <- SpatialPolygons(list(Polygons(list(Polygon(meuse.riv)),"meuse.riv"))) 204s 204s > proj4string(meuse.riv) <- crs 204s 204s > data("meuse.area") 204s 204s > meuse.area = SpatialPolygons(list(Polygons(list(Polygon(meuse.area)), "area"))) 204s 204s > proj4string(meuse.area) <- crs 204s > 204s > v = variogram(log(zinc)~1, meuse_sf) 204s > (v.fit = fit.variogram(v, vgm(1, "Sph", 900, 1))) 204s model psill range 204s 1 Nug 0.05066243 0.0000 204s 2 Sph 0.59060780 897.0209 204s > k_sf = krige(log(zinc)~1, meuse_sf[-(1:5),], meuse_sf[1:5,], v.fit) 204s [using ordinary kriging] 204s > 204s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = FALSE) 204s [1] TRUE 204s > all.equal(k_sp, as(k_sf, "Spatial"), check.attributes = TRUE) 204s [1] "Attributes: < Component “bbox”: Attributes: < Component “dimnames”: Component 1: 2 string mismatches > >" 204s [2] "Attributes: < Component “coords”: Attributes: < Component “dimnames”: Component 2: 2 string mismatches > >" 204s [3] "Attributes: < Component “coords.nrs”: Numeric: lengths (2, 0) differ >" 204s > 204s > # 2. using stars for grid: 204s > 204s > suppressPackageStartupMessages(library(stars)) 204s > st = st_as_stars(meuse.grid) 205s > st_crs(st) 205s Coordinate Reference System: 205s User input: Amersfoort / RD New 205s wkt: 205s PROJCRS["Amersfoort / RD New", 205s BASEGEOGCRS["Amersfoort", 205s DATUM["Amersfoort", 205s ELLIPSOID["Bessel 1841",6377397.155,299.1528128, 205s LENGTHUNIT["metre",1]]], 205s PRIMEM["Greenwich",0, 205s ANGLEUNIT["degree",0.0174532925199433]], 205s ID["EPSG",4289]], 205s CONVERSION["RD New", 205s METHOD["Oblique Stereographic", 205s ID["EPSG",9809]], 205s PARAMETER["Latitude of natural origin",52.1561605555556, 205s ANGLEUNIT["degree",0.0174532925199433], 205s ID["EPSG",8801]], 205s PARAMETER["Longitude of natural origin",5.38763888888889, 205s ANGLEUNIT["degree",0.0174532925199433], 205s ID["EPSG",8802]], 205s PARAMETER["Scale factor at natural origin",0.9999079, 205s SCALEUNIT["unity",1], 205s ID["EPSG",8805]], 205s PARAMETER["False easting",155000, 205s LENGTHUNIT["metre",1], 205s ID["EPSG",8806]], 205s PARAMETER["False northing",463000, 205s LENGTHUNIT["metre",1], 205s ID["EPSG",8807]]], 205s CS[Cartesian,2], 205s AXIS["easting (X)",east, 205s ORDER[1], 205s LENGTHUNIT["metre",1]], 205s AXIS["northing (Y)",north, 205s ORDER[2], 205s LENGTHUNIT["metre",1]], 205s USAGE[ 205s SCOPE["Engineering survey, topographic mapping."], 205s AREA["Netherlands - onshore, including Waddenzee, Dutch Wadden Islands and 12-mile offshore coastal zone."], 205s BBOX[50.75,3.2,53.7,7.22]], 205s ID["EPSG",28992]] 205s > 205s > # compare inputs: 205s > sp = as(st, "Spatial") 205s > fullgrid(meuse.grid) = TRUE 205s > all.equal(sp, meuse.grid["dist"], check.attributes = FALSE) 205s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 205s [2] "Names: 1 string mismatch" 205s > all.equal(sp, meuse.grid["dist"], check.attributes = TRUE, use.names = FALSE) 205s [1] "Names: Lengths (5, 1) differ (string compare on first 1)" 205s [2] "Names: 1 string mismatch" 205s [3] "Attributes: < Component 3: Names: 1 string mismatch >" 205s [4] "Attributes: < Component 3: Length mismatch: comparison on first 1 components >" 205s [5] "Attributes: < Component 3: Component 1: Mean relative difference: 1.08298 >" 205s [6] "Attributes: < Component 4: Attributes: < Component 2: names for current but not for target > >" 205s [7] "Attributes: < Component 4: Attributes: < Component 3: names for current but not for target > >" 205s > 205s > # kriging: 205s > st_crs(st) = st_crs(meuse_sf) = NA # GDAL roundtrip messes them up! 205s > k_st = if (Sys.getenv("USER") == "travis") { 205s + try(krige(log(zinc)~1, meuse_sf, st, v.fit)) 205s + } else { 205s + krige(log(zinc)~1, meuse_sf, st, v.fit) 205s + } 205s [using ordinary kriging] 205s > k_st 205s stars object with 2 dimensions and 2 attributes 205s attribute(s): 205s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 205s var1.pred 4.7765547 5.2376293 5.5728839 5.7072287 6.1717619 7.4399911 5009 205s var1.var 0.0854949 0.1372864 0.1621838 0.1853319 0.2116152 0.5002756 5009 205s dimension(s): 205s from to offset delta x/y 205s x 1 78 178440 40 [x] 205s y 1 104 333760 -40 [y] 205s > 205s > # handle factors, when going to stars? 205s > k_sp_grd$cls = cut(k_sp_grd$var1.pred, c(0, 5, 6, 7, 8, 9)) 205s > st_as_stars(k_sp_grd) 205s stars object with 2 dimensions and 3 attributes 205s attribute(s): 205s var1.pred var1.var cls 205s Min. :4.777 Min. :0.085 (0,5]: 316 205s 1st Qu.:5.238 1st Qu.:0.137 (5,6]:1778 205s Median :5.573 Median :0.162 (6,7]: 962 205s Mean :5.707 Mean :0.185 (7,8]: 47 205s 3rd Qu.:6.172 3rd Qu.:0.212 (8,9]: 0 205s Max. :7.440 Max. :0.500 NA's :5009 205s NA's :5009 NA's :5009 205s dimension(s): 205s from to offset delta refsys x/y 205s x 1 78 178440 40 Amersfoort / RD New [x] 205s y 1 104 333760 -40 Amersfoort / RD New [y] 205s > if (require(raster, quietly = TRUE)) { 205s + print(st_as_stars(raster::stack(k_sp_grd))) # check 205s + print(all.equal(st_redimension(st_as_stars(k_sp_grd)), st_as_stars(raster::stack(k_sp_grd)), check.attributes=FALSE)) 205s + } 210s stars object with 3 dimensions and 1 attribute 210s attribute(s): 210s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 210s var1.pred 0.0854949 0.2116778 2 2.710347 5.237542 7.439991 15027 210s dimension(s): 210s from to offset delta refsys values 210s x 1 78 178440 40 Amersfoort / RD New NULL 210s y 1 104 333760 -40 Amersfoort / RD New NULL 210s band 1 3 NA NA NA var1.pred, var1.var , cls 210s x/y 210s x [x] 210s y [y] 210s band 210s [1] TRUE 210s > 210s > suppressPackageStartupMessages(library(spacetime)) 210s > 210s > Sys.setenv(TZ="") 210s > tm = as.POSIXct("2019-02-25 15:37:24 CET") 210s > n = 4 210s > s = stars:::st_stars(list(foo = array(1:(n^3), rep(n,3))), 211s + stars:::create_dimensions(list( 211s + x = stars:::create_dimension(from = 1, to = n, offset = 10, delta = 0.5), 211s + y = stars:::create_dimension(from = 1, to = n, offset = 0, delta = -0.7), 211s + time = stars:::create_dimension(values = tm + 1:n)), 211s + raster = stars:::get_raster(dimensions = c("x", "y"))) 211s + ) 211s > s 211s stars object with 3 dimensions and 1 attribute 211s attribute(s): 211s Min. 1st Qu. Median Mean 3rd Qu. Max. 211s foo 1 16.75 32.5 32.5 48.25 64 211s dimension(s): 211s from to offset delta refsys x/y 211s x 1 4 10 0.5 NA [x] 211s y 1 4 0 -0.7 NA [y] 211s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 211s > 211s > as.data.frame(s) 211s x y time foo 211s 1 10.25 -0.35 2019-02-25 15:37:25 1 211s 2 10.75 -0.35 2019-02-25 15:37:25 2 211s 3 11.25 -0.35 2019-02-25 15:37:25 3 211s 4 11.75 -0.35 2019-02-25 15:37:25 4 211s 5 10.25 -1.05 2019-02-25 15:37:25 5 211s 6 10.75 -1.05 2019-02-25 15:37:25 6 211s 7 11.25 -1.05 2019-02-25 15:37:25 7 211s 8 11.75 -1.05 2019-02-25 15:37:25 8 211s 9 10.25 -1.75 2019-02-25 15:37:25 9 211s 10 10.75 -1.75 2019-02-25 15:37:25 10 211s 11 11.25 -1.75 2019-02-25 15:37:25 11 211s 12 11.75 -1.75 2019-02-25 15:37:25 12 211s 13 10.25 -2.45 2019-02-25 15:37:25 13 211s 14 10.75 -2.45 2019-02-25 15:37:25 14 211s 15 11.25 -2.45 2019-02-25 15:37:25 15 211s 16 11.75 -2.45 2019-02-25 15:37:25 16 211s 17 10.25 -0.35 2019-02-25 15:37:26 17 211s 18 10.75 -0.35 2019-02-25 15:37:26 18 211s 19 11.25 -0.35 2019-02-25 15:37:26 19 211s 20 11.75 -0.35 2019-02-25 15:37:26 20 211s 21 10.25 -1.05 2019-02-25 15:37:26 21 211s 22 10.75 -1.05 2019-02-25 15:37:26 22 211s 23 11.25 -1.05 2019-02-25 15:37:26 23 211s 24 11.75 -1.05 2019-02-25 15:37:26 24 211s 25 10.25 -1.75 2019-02-25 15:37:26 25 211s 26 10.75 -1.75 2019-02-25 15:37:26 26 211s 27 11.25 -1.75 2019-02-25 15:37:26 27 211s 28 11.75 -1.75 2019-02-25 15:37:26 28 211s 29 10.25 -2.45 2019-02-25 15:37:26 29 211s 30 10.75 -2.45 2019-02-25 15:37:26 30 211s 31 11.25 -2.45 2019-02-25 15:37:26 31 211s 32 11.75 -2.45 2019-02-25 15:37:26 32 211s 33 10.25 -0.35 2019-02-25 15:37:27 33 211s 34 10.75 -0.35 2019-02-25 15:37:27 34 211s 35 11.25 -0.35 2019-02-25 15:37:27 35 211s 36 11.75 -0.35 2019-02-25 15:37:27 36 211s 37 10.25 -1.05 2019-02-25 15:37:27 37 211s 38 10.75 -1.05 2019-02-25 15:37:27 38 211s 39 11.25 -1.05 2019-02-25 15:37:27 39 211s 40 11.75 -1.05 2019-02-25 15:37:27 40 211s 41 10.25 -1.75 2019-02-25 15:37:27 41 211s 42 10.75 -1.75 2019-02-25 15:37:27 42 211s 43 11.25 -1.75 2019-02-25 15:37:27 43 211s 44 11.75 -1.75 2019-02-25 15:37:27 44 211s 45 10.25 -2.45 2019-02-25 15:37:27 45 211s 46 10.75 -2.45 2019-02-25 15:37:27 46 211s 47 11.25 -2.45 2019-02-25 15:37:27 47 211s 48 11.75 -2.45 2019-02-25 15:37:27 48 211s 49 10.25 -0.35 2019-02-25 15:37:28 49 211s 50 10.75 -0.35 2019-02-25 15:37:28 50 211s 51 11.25 -0.35 2019-02-25 15:37:28 51 211s 52 11.75 -0.35 2019-02-25 15:37:28 52 211s 53 10.25 -1.05 2019-02-25 15:37:28 53 211s 54 10.75 -1.05 2019-02-25 15:37:28 54 211s 55 11.25 -1.05 2019-02-25 15:37:28 55 211s 56 11.75 -1.05 2019-02-25 15:37:28 56 211s 57 10.25 -1.75 2019-02-25 15:37:28 57 211s 58 10.75 -1.75 2019-02-25 15:37:28 58 211s 59 11.25 -1.75 2019-02-25 15:37:28 59 211s 60 11.75 -1.75 2019-02-25 15:37:28 60 211s 61 10.25 -2.45 2019-02-25 15:37:28 61 211s 62 10.75 -2.45 2019-02-25 15:37:28 62 211s 63 11.25 -2.45 2019-02-25 15:37:28 63 211s 64 11.75 -2.45 2019-02-25 15:37:28 64 211s > plot(s, col = sf.colors(), axes = TRUE) 211s > (s.stfdf = as(s, "STFDF")) 211s An object of class "STFDF" 211s Slot "data": 211s foo 211s 1 1 211s 2 2 211s 3 3 211s 4 4 211s 5 5 211s 6 6 211s 7 7 211s 8 8 211s 9 9 211s 10 10 211s 11 11 211s 12 12 211s 13 13 211s 14 14 211s 15 15 211s 16 16 211s 17 17 211s 18 18 211s 19 19 211s 20 20 211s 21 21 211s 22 22 211s 23 23 211s 24 24 211s 25 25 211s 26 26 211s 27 27 211s 28 28 211s 29 29 211s 30 30 211s 31 31 211s 32 32 211s 33 33 211s 34 34 211s 35 35 211s 36 36 211s 37 37 211s 38 38 211s 39 39 211s 40 40 211s 41 41 211s 42 42 211s 43 43 211s 44 44 211s 45 45 211s 46 46 211s 47 47 211s 48 48 211s 49 49 211s 50 50 211s 51 51 211s 52 52 211s 53 53 211s 54 54 211s 55 55 211s 56 56 211s 57 57 211s 58 58 211s 59 59 211s 60 60 211s 61 61 211s 62 62 211s 63 63 211s 64 64 211s 211s Slot "sp": 211s Object of class SpatialPixels 211s Grid topology: 211s cellcentre.offset cellsize cells.dim 211s x 10.25 0.5 4 211s y -2.45 0.7 4 211s SpatialPoints: 211s x y 211s [1,] 10.25 -0.35 211s [2,] 10.75 -0.35 211s [3,] 11.25 -0.35 211s [4,] 11.75 -0.35 211s [5,] 10.25 -1.05 211s [6,] 10.75 -1.05 211s [7,] 11.25 -1.05 211s [8,] 11.75 -1.05 211s [9,] 10.25 -1.75 211s [10,] 10.75 -1.75 211s [11,] 11.25 -1.75 211s [12,] 11.75 -1.75 211s [13,] 10.25 -2.45 211s [14,] 10.75 -2.45 211s [15,] 11.25 -2.45 211s [16,] 11.75 -2.45 211s Coordinate Reference System (CRS) arguments: NA 211s 211s Slot "time": 211s timeIndex 211s 2019-02-25 15:37:25 1 211s 2019-02-25 15:37:26 2 211s 2019-02-25 15:37:27 3 211s 2019-02-25 15:37:28 4 211s 211s Slot "endTime": 211s [1] "2019-02-25 15:37:26 Universal" "2019-02-25 15:37:27 Universal" 211s [3] "2019-02-25 15:37:28 Universal" "2019-02-25 15:37:29 Universal" 211s 211s > stplot(s.stfdf, scales = list(draw = TRUE)) 211s > 211s > (s2 = st_as_stars(s.stfdf)) 211s stars object with 3 dimensions and 1 attribute 211s attribute(s): 211s Min. 1st Qu. Median Mean 3rd Qu. Max. 211s foo 1 16.75 32.5 32.5 48.25 64 211s dimension(s): 211s from to offset delta refsys x/y 211s x 1 4 10 0.5 NA [x] 211s y 1 4 -1.11e-16 -0.7 NA [y] 211s time 1 4 2019-02-25 15:37:25 Universal 1 secs POSIXct 211s > plot(s2, col = sf.colors(), axes = TRUE) 211s > all.equal(s, s2, check.attributes = FALSE) 211s [1] TRUE 211s > 211s > # multiple simulations: 211s > data(meuse, package = "sp") 211s > data(meuse.grid, package = "sp") 211s > coordinates(meuse.grid) <- ~x+y 211s > gridded(meuse.grid) <- TRUE 211s > meuse.grid = st_as_stars(meuse.grid) 211s > meuse_sf = st_as_sf(meuse, coords = c("x", "y")) 211s > g = gstat(NULL, "zinc", zinc~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10) 211s > g = gstat(g, "lead", lead~1, meuse_sf, model = vgm(1, "Exp", 300), nmax = 10, fill.cross = TRUE) 211s > set.seed(123) 211s > (p = predict(g, meuse.grid, nsim = 5)) 211s drawing 5 multivariate GLS realisations of beta... 211s [using conditional Gaussian simulation] 211s stars object with 3 dimensions and 2 attributes 211s attribute(s): 211s Min. 1st Qu. Median Mean 3rd Qu. Max. NA's 211s zinc 101.7643 199.59256 300.2140 399.8017 544.0327 1817.2057 25045 211s lead 32.7799 73.03151 107.9339 133.1725 178.8162 638.9396 25045 211s dimension(s): 211s from to offset delta values x/y 211s x 1 78 178440 40 NULL [x] 211s y 1 104 333760 -40 NULL [y] 211s sample 1 5 NA NA sim1,...,sim5 211s > 211s BEGIN TEST unproj.R 211s 211s R version 4.3.2 (2023-10-31) -- "Eye Holes" 211s Copyright (C) 2023 The R Foundation for Statistical Computing 211s Platform: powerpc64le-unknown-linux-gnu (64-bit) 211s 211s R is free software and comes with ABSOLUTELY NO WARRANTY. 211s You are welcome to redistribute it under certain conditions. 211s Type 'license()' or 'licence()' for distribution details. 211s 211s R is a collaborative project with many contributors. 211s Type 'contributors()' for more information and 211s 'citation()' on how to cite R or R packages in publications. 211s 211s Type 'demo()' for some demos, 'help()' for on-line help, or 211s 'help.start()' for an HTML browser interface to help. 211s Type 'q()' to quit R. 211s 211s > # DOI 10.1007/s11004-011-9344-7 211s > # http://mypage.iu.edu/~srobeson/Pubs/variogram_sphere_mathgeo_2011.pdf 211s > 211s > suppressPackageStartupMessages(library(sp)) 211s > library(gstat) 212s > 212s > if (require(sp, quietly = TRUE) && require(fields, quietly = TRUE) && require(sf, quietly = TRUE)) { 212s + data(meuse) 212s + coordinates(meuse) = ~x+y 212s + proj4string(meuse) = CRS("+init=epsg:28992") 212s + ll = "+proj=longlat +ellps=WGS84" 212s + # meuse.ll = spTransform(meuse, CRS("+proj=longlat +ellps=WGS84")) 212s + meuse.ll = as(st_transform(sf::st_as_sf(meuse), sf::st_crs(ll)), "Spatial") 212s + meuse.ll[1:10,] 212s + variogram(log(zinc)~1, meuse.ll) 212s + 212s + cloud1 = variogram(log(zinc)~1, meuse, cloud=T, cutoff=6000) 212s + cloud2 = variogram(log(zinc)~1, meuse.ll, cloud=T, cutoff=6) 212s + 212s + plot(cloud1$dist/1000, cloud2$dist, xlab="Amersfoort, km", ylab = "Long/lat") 212s + abline(0,1) 212s + 212s + data(ozone2) 212s + oz = SpatialPointsDataFrame(ozone2$lon.lat, 212s + data.frame(t(ozone2$y)), 212s + proj4string=CRS("+proj=longlat +ellps=WGS84")) 212s + variogram(X870731~1,oz[!is.na(oz$X870731),]) 212s + utm16 = "+proj=utm +zone=16" 212s + # oz.utm = spTransform(oz, utm16) 212s + oz.utm = as(sf::st_transform(sf::st_as_sf(oz), utm16) , "Spatial") 212s + variogram(X870731~1,oz.utm[!is.na(oz$X870731),]) 212s + 212s + # Timothy Hilton, r-sig-geo, Sept 14, 2008: 212s + 212s + foo <- 212s + structure(list(z = c(-1.95824831109744, -1.9158901643563, 4.22211761150161, 212s + 3.23356929459598, 1.12038389231868, 0.34613850821113, 1.12589932643631, 212s + 23.517912251617, 3.0519158690268, 3.20261431141517, -2.10947106854739 212s + ), lon = c(-125.29228, -82.1556, -98.524722, -99.948333, -104.691741, 212s + -79.420833, -105.100533, -88.291867, -72.171478, -121.556944, 212s + -89.34765), lat = c(49.87217, 48.2167, 55.905833, 56.635833, 212s + 53.916264, 39.063333, 48.307883, 40.0061, 42.537756, 44.448889, 212s + 46.242017)), .Names = c("z", "lon", "lat"), row.names = c(NA, 212s + -11L), class = "data.frame") 212s + 212s + coordinates(foo) <- ~lon+lat 212s + 212s + proj4string(foo) <- CRS('+proj=longlat +ellps=WGS84') 212s + 212s + vg.foo <- variogram(z~1, foo, cloud=TRUE, cutoff=1e10) 212s + 212s + cat('==========\nvariogram:\n') 212s + print(head(vg.foo)) 212s + 212s + cat('==========\nspDistsN1 Distances:\n') 212s + print(spDistsN1(coordinates(foo), coordinates(foo)[1,], longlat=TRUE)) 212s + } 212s Spam version 2.10-0 (2023-10-23) is loaded. 212s Type 'help( Spam)' or 'demo( spam)' for a short introduction 212s and overview of this package. 212s Help for individual functions is also obtained by adding the 212s suffix '.spam' to the function name, e.g. 'help( chol.spam)'. 212s 212s Attaching package: ‘spam’ 212s 212s The following objects are masked from ‘package:base’: 212s 212s backsolve, forwardsolve 212s 212s 212s Try help(fields) to get started. 213s Linking to GEOS 3.12.1, GDAL 3.8.4, PROJ 9.4.0; sf_use_s2() is TRUE 213s ========== 213s variogram: 213s dist gamma dir.hor dir.ver id left right 213s 1 3115.1190 8.971063e-04 0 0 var1 2 1 213s 2 1908.0468 1.909846e+01 0 0 var1 3 1 213s 3 1405.6211 1.883757e+01 0 0 var1 3 2 213s 4 1837.5667 1.347749e+01 0 0 var1 4 1 213s 5 1522.8765 1.325847e+01 0 0 var1 4 2 213s 6 119.9386 4.886139e-01 0 0 var1 4 3 213s ========== 213s spDistsN1 Distances: 213s [1] 0.0000 3115.1190 1908.0468 1837.5667 1481.6293 3775.6751 1480.4477 213s [8] 3081.7541 4090.4022 665.9348 2683.1516 213s > 213s Warning messages: 213s 1: package ‘sf’ was built under R version 4.3.3 213s 2: In CPL_crs_from_input(x) : 213s GDAL Message 1: +init=epsg:XXXX syntax is deprecated. It might return a CRS with a non-EPSG compliant axis order. 213s BEGIN TEST variogram.R 214s 214s R version 4.3.2 (2023-10-31) -- "Eye Holes" 214s Copyright (C) 2023 The R Foundation for Statistical Computing 214s Platform: powerpc64le-unknown-linux-gnu (64-bit) 214s 214s R is free software and comes with ABSOLUTELY NO WARRANTY. 214s You are welcome to redistribute it under certain conditions. 214s Type 'license()' or 'licence()' for distribution details. 214s 214s R is a collaborative project with many contributors. 214s Type 'contributors()' for more information and 214s 'citation()' on how to cite R or R packages in publications. 214s 214s Type 'demo()' for some demos, 'help()' for on-line help, or 214s 'help.start()' for an HTML browser interface to help. 214s Type 'q()' to quit R. 214s 214s > library(sp) 214s > library(gstat) 214s > data(meuse) 214s > variogram(log(zinc)~1, ~x+y, meuse) 215s np dist gamma dir.hor dir.ver id 215s 1 57 79.29244 0.1234479 0 0 var1 215s 2 299 163.97367 0.2162185 0 0 var1 215s 3 419 267.36483 0.3027859 0 0 var1 215s 4 457 372.73542 0.4121448 0 0 var1 215s 5 547 478.47670 0.4634128 0 0 var1 215s 6 533 585.34058 0.5646933 0 0 var1 215s 7 574 693.14526 0.5689683 0 0 var1 215s 8 564 796.18365 0.6186769 0 0 var1 215s 9 589 903.14650 0.6471479 0 0 var1 215s 10 543 1011.29177 0.6915705 0 0 var1 215s 11 500 1117.86235 0.7033984 0 0 var1 215s 12 477 1221.32810 0.6038770 0 0 var1 215s 13 452 1329.16407 0.6517158 0 0 var1 215s 14 457 1437.25620 0.5665318 0 0 var1 215s 15 415 1543.20248 0.5748227 0 0 var1 215s > 215s > coordinates(meuse) <- ~ x + y 215s > variogram(log(zinc)~1, meuse) 215s np dist gamma dir.hor dir.ver id 215s 1 57 79.29244 0.1234479 0 0 var1 215s 2 299 163.97367 0.2162185 0 0 var1 215s 3 419 267.36483 0.3027859 0 0 var1 215s 4 457 372.73542 0.4121448 0 0 var1 215s 5 547 478.47670 0.4634128 0 0 var1 215s 6 533 585.34058 0.5646933 0 0 var1 215s 7 574 693.14526 0.5689683 0 0 var1 215s 8 564 796.18365 0.6186769 0 0 var1 215s 9 589 903.14650 0.6471479 0 0 var1 215s 10 543 1011.29177 0.6915705 0 0 var1 215s 11 500 1117.86235 0.7033984 0 0 var1 215s 12 477 1221.32810 0.6038770 0 0 var1 215s 13 452 1329.16407 0.6517158 0 0 var1 215s 14 457 1437.25620 0.5665318 0 0 var1 215s 15 415 1543.20248 0.5748227 0 0 var1 215s > 215s > ind=seq(1,155,2) 215s > var1= meuse[ind,] 215s > var2= meuse[-ind,] 215s > g <- gstat(NULL, id = "lead", form = lead ~ 1, data=var1) 215s > g <- gstat(g, id = "zinc", form = zinc ~ 1, data=var2) 215s > v.cross <- variogram(g) 215s > plot(v.cross) 215s > 215s > 215s BEGIN TEST vdist.R 215s 215s R version 4.3.2 (2023-10-31) -- "Eye Holes" 215s Copyright (C) 2023 The R Foundation for Statistical Computing 215s Platform: powerpc64le-unknown-linux-gnu (64-bit) 215s 215s R is free software and comes with ABSOLUTELY NO WARRANTY. 215s You are welcome to redistribute it under certain conditions. 215s Type 'license()' or 'licence()' for distribution details. 215s 215s R is a collaborative project with many contributors. 215s Type 'contributors()' for more information and 215s 'citation()' on how to cite R or R packages in publications. 215s 215s Type 'demo()' for some demos, 'help()' for on-line help, or 215s 'help.start()' for an HTML browser interface to help. 215s Type 'q()' to quit R. 215s 215s > library(sp) 215s > library(gstat) 215s > 215s > data(meuse) 216s > coordinates(meuse) = ~x+y 216s > data(meuse.grid) 216s > gridded(meuse.grid) = ~x+y 216s > 216s > mg = meuse.grid 216s > gridded(mg) = FALSE 216s > mg= mg[1500,] 216s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 216s + vdist=FALSE, maxdist=1000,nmax=10) 216s [using ordinary kriging] 216s coordinates var1.pred var1.var 216s 1500 (180260, 331300) 5.007376 1.102622 216s > krige(log(zinc)~1,meuse,mg,vgm(1, "Exp", 300, anis=c(0,0.01)), 216s + vdist=TRUE, maxdist=1000,nmax=10) 216s [using ordinary kriging] 216s coordinates var1.pred var1.var 216s 1500 (180260, 331300) 5.50671 1.100095 216s > 216s autopkgtest [17:24:55]: test run-unit-test: -----------------------] 217s autopkgtest [17:24:56]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 217s run-unit-test PASS 217s autopkgtest [17:24:56]: test pkg-r-autopkgtest: preparing testbed 218s Reading package lists... 219s Building dependency tree... 219s Reading state information... 219s Starting pkgProblemResolver with broken count: 0 219s Starting 2 pkgProblemResolver with broken count: 0 219s Done 219s The following additional packages will be installed: 219s build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu 219s cpp-powerpc64le-linux-gnu dctrl-tools g++ g++-13 219s g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-13 219s gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gfortran gfortran-13 219s gfortran-13-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu 219s icu-devtools libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin 219s libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev libgfortran-13-dev libicu-dev 219s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev 219s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 219s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 219s libquadmath0 libreadline-dev libstdc++-13-dev libtirpc-dev libtsan2 219s libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 219s r-base-dev r-cran-backports r-cran-base64url r-cran-batchtools r-cran-brew 219s r-cran-checkmate r-cran-cli r-cran-crayon r-cran-data.table r-cran-fs 219s r-cran-future.batchtools r-cran-glue r-cran-hms r-cran-lifecycle 219s r-cran-pkgconfig r-cran-prettyunits r-cran-progress r-cran-r6 219s r-cran-rappdirs r-cran-stringi r-cran-vctrs r-cran-withr rpcsvc-proto 219s zlib1g-dev 219s Suggested packages: 219s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 219s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 219s gdb-powerpc64le-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 219s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 219s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 219s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 219s texlive-latex-recommended texlive-latex-extra texinfo r-cran-knitr 219s r-cran-rmarkdown r-cran-doparallel r-cran-foreach r-cran-parallelmap 219s r-cran-rpart r-cran-snow r-cran-tibble r-cran-rstudioapi gridengine-client 219s slurm-client r-cran-lubridate r-cran-covr r-cran-testthat r-cran-roxygen2 219s r-cran-callr 219s Recommended packages: 219s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-cran-testthat 219s r-cran-base64enc r-cran-openssl r-cran-ranger r-cran-fastmatch 219s r-cran-devtools r-cran-ggplot2 r-cran-knitr r-cran-rmarkdown r-cran-tinytest 219s r-cran-tibble r-cran-callr r-cran-covr r-cran-htmltools r-cran-htmlwidgets 219s r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi 219s r-cran-whoami r-cran-bit64 r-cran-bit r-cran-curl r-cran-r.utils 219s r-cran-nanotime r-cran-yaml r-cran-pillar r-cran-spelling r-cran-markdown 219s r-cran-r.rsp r-cran-dplyr r-cran-rsqlite r-cran-waldo r-cran-lintr 219s r-cran-tidyverse r-cran-generics r-cran-pkgdown r-cran-xml2 r-cran-zeallot 219s The following NEW packages will be installed: 219s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu 219s cpp-powerpc64le-linux-gnu dctrl-tools g++ g++-13 219s g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-13 219s gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gfortran gfortran-13 219s gfortran-13-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu 219s icu-devtools libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin 219s libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev libgfortran-13-dev libicu-dev 219s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev 219s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpcre2-16-0 219s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 219s libquadmath0 libreadline-dev libstdc++-13-dev libtirpc-dev libtsan2 219s libubsan1 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 219s r-base-dev r-cran-backports r-cran-base64url r-cran-batchtools r-cran-brew 219s r-cran-checkmate r-cran-cli r-cran-crayon r-cran-data.table r-cran-fs 219s r-cran-future.batchtools r-cran-glue r-cran-hms r-cran-lifecycle 219s r-cran-pkgconfig r-cran-prettyunits r-cran-progress r-cran-r6 219s r-cran-rappdirs r-cran-stringi r-cran-vctrs r-cran-withr rpcsvc-proto 219s zlib1g-dev 219s 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. 219s Need to get 106 MB/106 MB of archives. 219s After this operation, 393 MB of additional disk space will be used. 219s Get:1 /tmp/autopkgtest.0hAhn3/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [772 B] 219s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu2 [21.3 kB] 220s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el linux-libc-dev ppc64el 6.8.0-11.11 [1585 kB] 220s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB] 220s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1build1 [262 kB] 220s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3 [79.2 kB] 220s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB] 220s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu2 [2102 kB] 220s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3 [864 kB] 220s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1 [61.2 kB] 220s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [10.7 MB] 221s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-17ubuntu2 [1038 B] 221s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B] 221s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB] 221s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240303-1ubuntu1 [48.1 kB] 221s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240303-1ubuntu1 [32.4 kB] 221s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240303-1ubuntu1 [10.7 kB] 221s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240303-1ubuntu1 [2973 kB] 221s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240303-1ubuntu1 [1325 kB] 221s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240303-1ubuntu1 [2734 kB] 221s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240303-1ubuntu1 [1194 kB] 221s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240303-1ubuntu1 [158 kB] 221s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-17ubuntu2 [1581 kB] 221s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [20.6 MB] 222s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-17ubuntu2 [477 kB] 222s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B] 222s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B] 222s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-17ubuntu2 [2445 kB] 222s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [12.2 MB] 222s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-17ubuntu2 [14.5 kB] 222s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B] 222s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B] 222s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 222s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el dctrl-tools ppc64el 2.24-3build2 [70.6 kB] 222s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran-13-dev ppc64el 13.2.0-17ubuntu2 [604 kB] 222s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [11.2 MB] 222s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13 ppc64el 13.2.0-17ubuntu2 [10.3 kB] 222s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1030 B] 222s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran ppc64el 4:13.2.0-7ubuntu1 [1170 B] 222s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el icu-devtools ppc64el 74.2-1ubuntu1 [246 kB] 222s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas-dev ppc64el 3.12.0-3 [301 kB] 222s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5ubuntu1 [51.2 kB] 222s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu-dev ppc64el 74.2-1ubuntu1 [12.5 MB] 222s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-2ubuntu1 [357 kB] 222s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B] 222s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B] 223s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack-dev ppc64el 3.12.0-3 [6100 kB] 223s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libncurses-dev ppc64el 6.4+20240113-1ubuntu1 [485 kB] 223s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu1 [245 kB] 223s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu1 [228 kB] 223s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-posix3 ppc64el 10.42-4ubuntu1 [7016 B] 223s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-dev ppc64el 10.42-4ubuntu1 [794 kB] 223s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libpkgconf3 ppc64el 1.8.1-2 [36.9 kB] 223s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3.1ubuntu1 [902 kB] 223s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpng-dev ppc64el 1.6.43-3 [327 kB] 223s Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libreadline-dev ppc64el 8.2-3 [226 kB] 223s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf-bin ppc64el 1.8.1-2 [22.0 kB] 223s Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf ppc64el 1.8.1-2 [16.7 kB] 223s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el pkg-config ppc64el 1.8.1-2 [7170 B] 223s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma-dev ppc64el 5.4.5-0.3 [243 kB] 223s Get:61 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-dev all 4.3.2-1build1 [4336 B] 223s Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 223s Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-backports ppc64el 1.4.1-1 [101 kB] 223s Get:64 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-base64url ppc64el 1.4-2build1 [27.1 kB] 223s Get:65 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-brew all 1.0-10-1 [77.7 kB] 223s Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-checkmate ppc64el 2.3.1-1 [721 kB] 223s Get:67 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-data.table ppc64el 1.14.10+dfsg-1 [1909 kB] 223s Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fs ppc64el 1.6.3+dfsg-1 [231 kB] 223s Get:69 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-crayon all 1.5.2-1 [164 kB] 223s Get:70 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cli ppc64el 3.6.2-1 [1405 kB] 223s Get:71 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-glue ppc64el 1.7.0-1 [155 kB] 223s Get:72 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 223s Get:73 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 223s Get:74 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-vctrs ppc64el 0.6.5-1 [1399 kB] 223s Get:75 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-hms all 1.1.3-1 [96.5 kB] 223s Get:76 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-prettyunits all 1.2.0-1 [162 kB] 223s Get:77 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-r6 all 2.5.1-1 [99.0 kB] 223s Get:78 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-progress all 1.2.3-1 [91.9 kB] 223s Get:79 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rappdirs ppc64el 0.3.3-1 [47.7 kB] 223s Get:80 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-stringi ppc64el 1.8.3-1 [919 kB] 223s Get:81 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-withr all 2.5.0-1 [225 kB] 223s Get:82 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-batchtools ppc64el 0.9.17+dfsg-1 [713 kB] 223s Get:83 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-future.batchtools all 0.12.1+dfsg-1 [185 kB] 223s Fetched 106 MB in 4s (27.5 MB/s) 223s Selecting previously unselected package libc-dev-bin. 224s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76446 files and directories currently installed.) 224s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu2_ppc64el.deb ... 224s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 224s Selecting previously unselected package linux-libc-dev:ppc64el. 224s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_ppc64el.deb ... 224s Unpacking linux-libc-dev:ppc64el (6.8.0-11.11) ... 224s Selecting previously unselected package libcrypt-dev:ppc64el. 224s Preparing to unpack .../02-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ... 224s Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) ... 224s Selecting previously unselected package libtirpc-dev:ppc64el. 224s Preparing to unpack .../03-libtirpc-dev_1.3.4+ds-1build1_ppc64el.deb ... 224s Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1build1) ... 224s Selecting previously unselected package libnsl-dev:ppc64el. 224s Preparing to unpack .../04-libnsl-dev_1.3.0-3_ppc64el.deb ... 224s Unpacking libnsl-dev:ppc64el (1.3.0-3) ... 224s Selecting previously unselected package rpcsvc-proto. 224s Preparing to unpack .../05-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ... 224s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 224s Selecting previously unselected package libc6-dev:ppc64el. 224s Preparing to unpack .../06-libc6-dev_2.39-0ubuntu2_ppc64el.deb ... 224s Unpacking libc6-dev:ppc64el (2.39-0ubuntu2) ... 224s Selecting previously unselected package libisl23:ppc64el. 224s Preparing to unpack .../07-libisl23_0.26-3_ppc64el.deb ... 224s Unpacking libisl23:ppc64el (0.26-3) ... 224s Selecting previously unselected package libmpc3:ppc64el. 224s Preparing to unpack .../08-libmpc3_1.3.1-1_ppc64el.deb ... 224s Unpacking libmpc3:ppc64el (1.3.1-1) ... 224s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu. 224s Preparing to unpack .../09-cpp-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 224s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 224s Selecting previously unselected package cpp-13. 224s Preparing to unpack .../10-cpp-13_13.2.0-17ubuntu2_ppc64el.deb ... 224s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 224s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 224s Preparing to unpack .../11-cpp-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 224s Unpacking cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 224s Selecting previously unselected package cpp. 224s Preparing to unpack .../12-cpp_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 224s Unpacking cpp (4:13.2.0-7ubuntu1) ... 224s Selecting previously unselected package libcc1-0:ppc64el. 224s Preparing to unpack .../13-libcc1-0_14-20240303-1ubuntu1_ppc64el.deb ... 224s Unpacking libcc1-0:ppc64el (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package libitm1:ppc64el. 224s Preparing to unpack .../14-libitm1_14-20240303-1ubuntu1_ppc64el.deb ... 224s Unpacking libitm1:ppc64el (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package libatomic1:ppc64el. 224s Preparing to unpack .../15-libatomic1_14-20240303-1ubuntu1_ppc64el.deb ... 224s Unpacking libatomic1:ppc64el (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package libasan8:ppc64el. 224s Preparing to unpack .../16-libasan8_14-20240303-1ubuntu1_ppc64el.deb ... 224s Unpacking libasan8:ppc64el (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package liblsan0:ppc64el. 224s Preparing to unpack .../17-liblsan0_14-20240303-1ubuntu1_ppc64el.deb ... 224s Unpacking liblsan0:ppc64el (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package libtsan2:ppc64el. 224s Preparing to unpack .../18-libtsan2_14-20240303-1ubuntu1_ppc64el.deb ... 224s Unpacking libtsan2:ppc64el (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libubsan1:ppc64el. 225s Preparing to unpack .../19-libubsan1_14-20240303-1ubuntu1_ppc64el.deb ... 225s Unpacking libubsan1:ppc64el (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libquadmath0:ppc64el. 225s Preparing to unpack .../20-libquadmath0_14-20240303-1ubuntu1_ppc64el.deb ... 225s Unpacking libquadmath0:ppc64el (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libgcc-13-dev:ppc64el. 225s Preparing to unpack .../21-libgcc-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 225s Unpacking libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ... 225s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu. 225s Preparing to unpack .../22-gcc-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 225s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 225s Selecting previously unselected package gcc-13. 225s Preparing to unpack .../23-gcc-13_13.2.0-17ubuntu2_ppc64el.deb ... 225s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 225s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 225s Preparing to unpack .../24-gcc-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 225s Unpacking gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 225s Selecting previously unselected package gcc. 225s Preparing to unpack .../25-gcc_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 225s Unpacking gcc (4:13.2.0-7ubuntu1) ... 225s Selecting previously unselected package libstdc++-13-dev:ppc64el. 225s Preparing to unpack .../26-libstdc++-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 225s Unpacking libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ... 225s Selecting previously unselected package g++-13-powerpc64le-linux-gnu. 225s Preparing to unpack .../27-g++-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 225s Unpacking g++-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 226s Selecting previously unselected package g++-13. 226s Preparing to unpack .../28-g++-13_13.2.0-17ubuntu2_ppc64el.deb ... 226s Unpacking g++-13 (13.2.0-17ubuntu2) ... 226s Selecting previously unselected package g++-powerpc64le-linux-gnu. 226s Preparing to unpack .../29-g++-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 226s Unpacking g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 226s Selecting previously unselected package g++. 226s Preparing to unpack .../30-g++_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 226s Unpacking g++ (4:13.2.0-7ubuntu1) ... 226s Selecting previously unselected package build-essential. 226s Preparing to unpack .../31-build-essential_12.10ubuntu1_ppc64el.deb ... 226s Unpacking build-essential (12.10ubuntu1) ... 226s Selecting previously unselected package dctrl-tools. 226s Preparing to unpack .../32-dctrl-tools_2.24-3build2_ppc64el.deb ... 226s Unpacking dctrl-tools (2.24-3build2) ... 226s Selecting previously unselected package libgfortran-13-dev:ppc64el. 226s Preparing to unpack .../33-libgfortran-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 226s Unpacking libgfortran-13-dev:ppc64el (13.2.0-17ubuntu2) ... 226s Selecting previously unselected package gfortran-13-powerpc64le-linux-gnu. 226s Preparing to unpack .../34-gfortran-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 226s Unpacking gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 226s Selecting previously unselected package gfortran-13. 226s Preparing to unpack .../35-gfortran-13_13.2.0-17ubuntu2_ppc64el.deb ... 226s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 226s Selecting previously unselected package gfortran-powerpc64le-linux-gnu. 226s Preparing to unpack .../36-gfortran-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 226s Unpacking gfortran-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 226s Selecting previously unselected package gfortran. 226s Preparing to unpack .../37-gfortran_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 226s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 226s Selecting previously unselected package icu-devtools. 226s Preparing to unpack .../38-icu-devtools_74.2-1ubuntu1_ppc64el.deb ... 226s Unpacking icu-devtools (74.2-1ubuntu1) ... 226s Selecting previously unselected package libblas-dev:ppc64el. 226s Preparing to unpack .../39-libblas-dev_3.12.0-3_ppc64el.deb ... 226s Unpacking libblas-dev:ppc64el (3.12.0-3) ... 226s Selecting previously unselected package libbz2-dev:ppc64el. 226s Preparing to unpack .../40-libbz2-dev_1.0.8-5ubuntu1_ppc64el.deb ... 226s Unpacking libbz2-dev:ppc64el (1.0.8-5ubuntu1) ... 226s Selecting previously unselected package libicu-dev:ppc64el. 226s Preparing to unpack .../41-libicu-dev_74.2-1ubuntu1_ppc64el.deb ... 226s Unpacking libicu-dev:ppc64el (74.2-1ubuntu1) ... 227s Selecting previously unselected package libjpeg-turbo8-dev:ppc64el. 227s Preparing to unpack .../42-libjpeg-turbo8-dev_2.1.5-2ubuntu1_ppc64el.deb ... 227s Unpacking libjpeg-turbo8-dev:ppc64el (2.1.5-2ubuntu1) ... 227s Selecting previously unselected package libjpeg8-dev:ppc64el. 227s Preparing to unpack .../43-libjpeg8-dev_8c-2ubuntu11_ppc64el.deb ... 227s Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu11) ... 227s Selecting previously unselected package libjpeg-dev:ppc64el. 227s Preparing to unpack .../44-libjpeg-dev_8c-2ubuntu11_ppc64el.deb ... 227s Unpacking libjpeg-dev:ppc64el (8c-2ubuntu11) ... 227s Selecting previously unselected package liblapack-dev:ppc64el. 227s Preparing to unpack .../45-liblapack-dev_3.12.0-3_ppc64el.deb ... 227s Unpacking liblapack-dev:ppc64el (3.12.0-3) ... 227s Selecting previously unselected package libncurses-dev:ppc64el. 227s Preparing to unpack .../46-libncurses-dev_6.4+20240113-1ubuntu1_ppc64el.deb ... 227s Unpacking libncurses-dev:ppc64el (6.4+20240113-1ubuntu1) ... 227s Selecting previously unselected package libpcre2-16-0:ppc64el. 227s Preparing to unpack .../47-libpcre2-16-0_10.42-4ubuntu1_ppc64el.deb ... 227s Unpacking libpcre2-16-0:ppc64el (10.42-4ubuntu1) ... 227s Selecting previously unselected package libpcre2-32-0:ppc64el. 227s Preparing to unpack .../48-libpcre2-32-0_10.42-4ubuntu1_ppc64el.deb ... 227s Unpacking libpcre2-32-0:ppc64el (10.42-4ubuntu1) ... 227s Selecting previously unselected package libpcre2-posix3:ppc64el. 227s Preparing to unpack .../49-libpcre2-posix3_10.42-4ubuntu1_ppc64el.deb ... 227s Unpacking libpcre2-posix3:ppc64el (10.42-4ubuntu1) ... 227s Selecting previously unselected package libpcre2-dev:ppc64el. 227s Preparing to unpack .../50-libpcre2-dev_10.42-4ubuntu1_ppc64el.deb ... 227s Unpacking libpcre2-dev:ppc64el (10.42-4ubuntu1) ... 227s Selecting previously unselected package libpkgconf3:ppc64el. 227s Preparing to unpack .../51-libpkgconf3_1.8.1-2_ppc64el.deb ... 227s Unpacking libpkgconf3:ppc64el (1.8.1-2) ... 227s Selecting previously unselected package zlib1g-dev:ppc64el. 227s Preparing to unpack .../52-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu1_ppc64el.deb ... 227s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu1) ... 227s Selecting previously unselected package libpng-dev:ppc64el. 227s Preparing to unpack .../53-libpng-dev_1.6.43-3_ppc64el.deb ... 227s Unpacking libpng-dev:ppc64el (1.6.43-3) ... 227s Selecting previously unselected package libreadline-dev:ppc64el. 227s Preparing to unpack .../54-libreadline-dev_8.2-3_ppc64el.deb ... 227s Unpacking libreadline-dev:ppc64el (8.2-3) ... 227s Selecting previously unselected package pkgconf-bin. 227s Preparing to unpack .../55-pkgconf-bin_1.8.1-2_ppc64el.deb ... 227s Unpacking pkgconf-bin (1.8.1-2) ... 227s Selecting previously unselected package pkgconf:ppc64el. 227s Preparing to unpack .../56-pkgconf_1.8.1-2_ppc64el.deb ... 227s Unpacking pkgconf:ppc64el (1.8.1-2) ... 227s Selecting previously unselected package pkg-config:ppc64el. 227s Preparing to unpack .../57-pkg-config_1.8.1-2_ppc64el.deb ... 227s Unpacking pkg-config:ppc64el (1.8.1-2) ... 227s Selecting previously unselected package liblzma-dev:ppc64el. 227s Preparing to unpack .../58-liblzma-dev_5.4.5-0.3_ppc64el.deb ... 227s Unpacking liblzma-dev:ppc64el (5.4.5-0.3) ... 227s Selecting previously unselected package r-base-dev. 227s Preparing to unpack .../59-r-base-dev_4.3.2-1build1_all.deb ... 227s Unpacking r-base-dev (4.3.2-1build1) ... 227s Selecting previously unselected package pkg-r-autopkgtest. 227s Preparing to unpack .../60-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 227s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 227s Selecting previously unselected package r-cran-backports. 227s Preparing to unpack .../61-r-cran-backports_1.4.1-1_ppc64el.deb ... 227s Unpacking r-cran-backports (1.4.1-1) ... 227s Selecting previously unselected package r-cran-base64url. 227s Preparing to unpack .../62-r-cran-base64url_1.4-2build1_ppc64el.deb ... 227s Unpacking r-cran-base64url (1.4-2build1) ... 227s Selecting previously unselected package r-cran-brew. 227s Preparing to unpack .../63-r-cran-brew_1.0-10-1_all.deb ... 227s Unpacking r-cran-brew (1.0-10-1) ... 227s Selecting previously unselected package r-cran-checkmate. 227s Preparing to unpack .../64-r-cran-checkmate_2.3.1-1_ppc64el.deb ... 227s Unpacking r-cran-checkmate (2.3.1-1) ... 227s Selecting previously unselected package r-cran-data.table. 227s Preparing to unpack .../65-r-cran-data.table_1.14.10+dfsg-1_ppc64el.deb ... 227s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 227s Selecting previously unselected package r-cran-fs. 227s Preparing to unpack .../66-r-cran-fs_1.6.3+dfsg-1_ppc64el.deb ... 227s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 227s Selecting previously unselected package r-cran-crayon. 227s Preparing to unpack .../67-r-cran-crayon_1.5.2-1_all.deb ... 227s Unpacking r-cran-crayon (1.5.2-1) ... 227s Selecting previously unselected package r-cran-cli. 227s Preparing to unpack .../68-r-cran-cli_3.6.2-1_ppc64el.deb ... 227s Unpacking r-cran-cli (3.6.2-1) ... 227s Selecting previously unselected package r-cran-glue. 227s Preparing to unpack .../69-r-cran-glue_1.7.0-1_ppc64el.deb ... 227s Unpacking r-cran-glue (1.7.0-1) ... 227s Selecting previously unselected package r-cran-lifecycle. 227s Preparing to unpack .../70-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 227s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 228s Selecting previously unselected package r-cran-pkgconfig. 228s Preparing to unpack .../71-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 228s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 228s Selecting previously unselected package r-cran-vctrs. 228s Preparing to unpack .../72-r-cran-vctrs_0.6.5-1_ppc64el.deb ... 228s Unpacking r-cran-vctrs (0.6.5-1) ... 228s Selecting previously unselected package r-cran-hms. 228s Preparing to unpack .../73-r-cran-hms_1.1.3-1_all.deb ... 228s Unpacking r-cran-hms (1.1.3-1) ... 228s Selecting previously unselected package r-cran-prettyunits. 228s Preparing to unpack .../74-r-cran-prettyunits_1.2.0-1_all.deb ... 228s Unpacking r-cran-prettyunits (1.2.0-1) ... 228s Selecting previously unselected package r-cran-r6. 228s Preparing to unpack .../75-r-cran-r6_2.5.1-1_all.deb ... 228s Unpacking r-cran-r6 (2.5.1-1) ... 228s Selecting previously unselected package r-cran-progress. 228s Preparing to unpack .../76-r-cran-progress_1.2.3-1_all.deb ... 228s Unpacking r-cran-progress (1.2.3-1) ... 228s Selecting previously unselected package r-cran-rappdirs. 228s Preparing to unpack .../77-r-cran-rappdirs_0.3.3-1_ppc64el.deb ... 228s Unpacking r-cran-rappdirs (0.3.3-1) ... 228s Selecting previously unselected package r-cran-stringi. 228s Preparing to unpack .../78-r-cran-stringi_1.8.3-1_ppc64el.deb ... 228s Unpacking r-cran-stringi (1.8.3-1) ... 228s Selecting previously unselected package r-cran-withr. 228s Preparing to unpack .../79-r-cran-withr_2.5.0-1_all.deb ... 228s Unpacking r-cran-withr (2.5.0-1) ... 228s Selecting previously unselected package r-cran-batchtools. 228s Preparing to unpack .../80-r-cran-batchtools_0.9.17+dfsg-1_ppc64el.deb ... 228s Unpacking r-cran-batchtools (0.9.17+dfsg-1) ... 228s Selecting previously unselected package r-cran-future.batchtools. 228s Preparing to unpack .../81-r-cran-future.batchtools_0.12.1+dfsg-1_all.deb ... 228s Unpacking r-cran-future.batchtools (0.12.1+dfsg-1) ... 228s Selecting previously unselected package autopkgtest-satdep. 228s Preparing to unpack .../82-2-autopkgtest-satdep.deb ... 228s Unpacking autopkgtest-satdep (0) ... 228s Setting up r-cran-fs (1.6.3+dfsg-1) ... 228s Setting up r-cran-withr (2.5.0-1) ... 228s Setting up r-cran-backports (1.4.1-1) ... 228s Setting up r-cran-prettyunits (1.2.0-1) ... 228s Setting up linux-libc-dev:ppc64el (6.8.0-11.11) ... 228s Setting up r-cran-checkmate (2.3.1-1) ... 228s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 228s Setting up r-cran-glue (1.7.0-1) ... 228s Setting up r-cran-cli (3.6.2-1) ... 228s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 228s Setting up libpcre2-16-0:ppc64el (10.42-4ubuntu1) ... 228s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 228s Setting up libpcre2-32-0:ppc64el (10.42-4ubuntu1) ... 228s Setting up r-cran-brew (1.0-10-1) ... 228s Setting up libtirpc-dev:ppc64el (1.3.4+ds-1build1) ... 228s Setting up libpkgconf3:ppc64el (1.8.1-2) ... 228s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 228s Setting up r-cran-stringi (1.8.3-1) ... 228s Setting up libquadmath0:ppc64el (14-20240303-1ubuntu1) ... 228s Setting up r-cran-crayon (1.5.2-1) ... 228s Setting up libmpc3:ppc64el (1.3.1-1) ... 228s Setting up libatomic1:ppc64el (14-20240303-1ubuntu1) ... 228s Setting up icu-devtools (74.2-1ubuntu1) ... 228s Setting up pkgconf-bin (1.8.1-2) ... 228s Setting up liblzma-dev:ppc64el (5.4.5-0.3) ... 228s Setting up libubsan1:ppc64el (14-20240303-1ubuntu1) ... 228s Setting up libpcre2-posix3:ppc64el (10.42-4ubuntu1) ... 228s Setting up libnsl-dev:ppc64el (1.3.0-3) ... 228s Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ... 228s Setting up libasan8:ppc64el (14-20240303-1ubuntu1) ... 228s Setting up libtsan2:ppc64el (14-20240303-1ubuntu1) ... 228s Setting up r-cran-r6 (2.5.1-1) ... 228s Setting up libisl23:ppc64el (0.26-3) ... 228s Setting up libc-dev-bin (2.39-0ubuntu2) ... 228s Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 228s Setting up libcc1-0:ppc64el (14-20240303-1ubuntu1) ... 228s Setting up r-cran-vctrs (0.6.5-1) ... 228s Setting up r-cran-rappdirs (0.3.3-1) ... 228s Setting up liblsan0:ppc64el (14-20240303-1ubuntu1) ... 228s Setting up libblas-dev:ppc64el (3.12.0-3) ... 228s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode 228s Setting up dctrl-tools (2.24-3build2) ... 228s Setting up libitm1:ppc64el (14-20240303-1ubuntu1) ... 228s Setting up cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 228s Setting up r-cran-base64url (1.4-2build1) ... 228s Setting up cpp-13 (13.2.0-17ubuntu2) ... 228s Setting up pkgconf:ppc64el (1.8.1-2) ... 228s Setting up r-cran-hms (1.1.3-1) ... 228s Setting up liblapack-dev:ppc64el (3.12.0-3) ... 228s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode 228s Setting up pkg-config:ppc64el (1.8.1-2) ... 228s Setting up libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ... 228s Setting up cpp (4:13.2.0-7ubuntu1) ... 228s Setting up libc6-dev:ppc64el (2.39-0ubuntu2) ... 228s Setting up libgfortran-13-dev:ppc64el (13.2.0-17ubuntu2) ... 228s Setting up r-cran-progress (1.2.3-1) ... 228s Setting up libicu-dev:ppc64el (74.2-1ubuntu1) ... 228s Setting up libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ... 228s Setting up libbz2-dev:ppc64el (1.0.8-5ubuntu1) ... 228s Setting up libjpeg-turbo8-dev:ppc64el (2.1.5-2ubuntu1) ... 228s Setting up libncurses-dev:ppc64el (6.4+20240113-1ubuntu1) ... 228s Setting up libpcre2-dev:ppc64el (10.42-4ubuntu1) ... 228s Setting up libreadline-dev:ppc64el (8.2-3) ... 228s Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 228s Setting up gcc-13 (13.2.0-17ubuntu2) ... 228s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu1) ... 228s Setting up r-cran-batchtools (0.9.17+dfsg-1) ... 228s Setting up libjpeg8-dev:ppc64el (8c-2ubuntu11) ... 228s Setting up gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 228s Setting up libpng-dev:ppc64el (1.6.43-3) ... 228s Setting up libjpeg-dev:ppc64el (8c-2ubuntu11) ... 228s Setting up g++-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 228s Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 228s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 228s Setting up r-cran-future.batchtools (0.12.1+dfsg-1) ... 228s Setting up g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 228s Setting up g++-13 (13.2.0-17ubuntu2) ... 228s Setting up gcc (4:13.2.0-7ubuntu1) ... 228s Setting up gfortran-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 228s Setting up g++ (4:13.2.0-7ubuntu1) ... 228s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 228s Setting up build-essential (12.10ubuntu1) ... 228s Setting up gfortran (4:13.2.0-7ubuntu1) ... 228s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 228s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 228s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 228s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 228s Setting up r-base-dev (4.3.2-1build1) ... 228s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 228s Setting up autopkgtest-satdep (0) ... 228s Processing triggers for man-db (2.12.0-3) ... 229s Processing triggers for install-info (7.1-3) ... 229s Processing triggers for libc-bin (2.39-0ubuntu2) ... 231s (Reading database ... 81756 files and directories currently installed.) 231s Removing autopkgtest-satdep (0) ... 232s autopkgtest [17:25:11]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 232s autopkgtest [17:25:11]: test pkg-r-autopkgtest: [----------------------- 232s Test: Try to load the R library gstat 232s 232s R version 4.3.2 (2023-10-31) -- "Eye Holes" 232s Copyright (C) 2023 The R Foundation for Statistical Computing 232s Platform: powerpc64le-unknown-linux-gnu (64-bit) 232s 232s R is free software and comes with ABSOLUTELY NO WARRANTY. 232s You are welcome to redistribute it under certain conditions. 232s Type 'license()' or 'licence()' for distribution details. 232s 232s R is a collaborative project with many contributors. 232s Type 'contributors()' for more information and 232s 'citation()' on how to cite R or R packages in publications. 232s 232s Type 'demo()' for some demos, 'help()' for on-line help, or 232s 'help.start()' for an HTML browser interface to help. 232s Type 'q()' to quit R. 232s 232s > library('gstat') 233s > 233s > 233s Other tests are currently unsupported! 233s They will be progressively added. 233s autopkgtest [17:25:12]: test pkg-r-autopkgtest: -----------------------] 234s pkg-r-autopkgtest PASS 234s autopkgtest [17:25:13]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 234s autopkgtest [17:25:13]: @@@@@@@@@@@@@@@@@@@@ summary 234s run-unit-test PASS 234s pkg-r-autopkgtest PASS 248s Creating nova instance adt-noble-ppc64el-r-cran-gstat-20240314-172119-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240314.img (UUID 438daa89-732e-4eab-98ca-4d7eade8166d)...