0s autopkgtest [22:17:01]: starting date and time: 2024-03-17 22:17:01+0000
  0s autopkgtest [22:17:01]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [22:17:01]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nm_t025a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-variantannotation,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-titancna --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-20.secgroup --name adt-noble-ppc64el-r-bioc-titancna-20240317-221701-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 77s autopkgtest [22:18:18]: testbed dpkg architecture: ppc64el
 78s autopkgtest [22:18:19]: testbed apt version: 2.7.12
 78s autopkgtest [22:18:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 78s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 79s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
 79s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3691 kB]
 79s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB]
 79s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
 79s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [643 kB]
 79s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
 79s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
 79s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
 79s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3978 kB]
 80s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
 80s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [48.0 kB]
 80s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
 83s Fetched 9033 kB in 2s (3983 kB/s)
 83s Reading package lists...
 85s Reading package lists...
 85s Building dependency tree...
 85s Reading state information...
 86s Calculating upgrade...
 86s The following packages will be REMOVED:
 86s   libssl3
 86s The following NEW packages will be installed:
 86s   libssl3t64
 86s The following packages have been kept back:
 86s   curl
 86s The following packages will be upgraded:
 86s   openssl
 86s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded.
 86s Need to get 3195 kB of archives.
 86s After this operation, 6144 B of additional disk space will be used.
 86s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu1 [1028 kB]
 86s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu1 [2168 kB]
 87s Fetched 3195 kB in 1s (4618 kB/s)
 87s (Reading database ... 
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(Reading database ... 70095 files and directories currently installed.)
 87s Preparing to unpack .../openssl_3.0.13-0ubuntu1_ppc64el.deb ...
 87s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
 87s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested:
 87s  wget depends on libssl3 (>= 3.0.0).
 87s  tnftp depends on libssl3 (>= 3.0.0).
 87s  tcpdump depends on libssl3 (>= 3.0.0).
 87s  systemd-resolved depends on libssl3 (>= 3.0.0).
 87s  systemd depends on libssl3 (>= 3.0.0).
 87s  sudo depends on libssl3 (>= 3.0.0).
 87s  rsync depends on libssl3 (>= 3.0.0).
 87s  python3-cryptography depends on libssl3 (>= 3.0.0).
 87s  openssh-server depends on libssl3 (>= 3.0.10).
 87s  openssh-client depends on libssl3 (>= 3.0.10).
 87s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
 87s  libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0).
 87s  libssh-4:ppc64el depends on libssl3 (>= 3.0.0).
 87s  libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0).
 87s  libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0).
 87s  libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0).
 87s  libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0).
 87s  libnvme1 depends on libssl3 (>= 3.0.0).
 87s  libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0).
 87s  libkmod2:ppc64el depends on libssl3 (>= 3.0.0).
 87s  libfido2-1:ppc64el depends on libssl3 (>= 3.0.0).
 87s  libcurl4:ppc64el depends on libssl3 (>= 3.0.0).
 87s  libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0).
 87s  kmod depends on libssl3 (>= 3.0.0).
 87s  dhcpcd-base depends on libssl3 (>= 3.0.0).
 87s  bind9-libs:ppc64el depends on libssl3 (>= 3.0.0).
 87s 
 87s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70095 files and directories currently installed.)
 87s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ...
 87s Selecting previously unselected package libssl3t64:ppc64el.
 87s (Reading database ... 
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(Reading database ... 70084 files and directories currently installed.)
 87s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_ppc64el.deb ...
 87s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu1) ...
 87s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu1) ...
 87s Setting up openssl (3.0.13-0ubuntu1) ...
 87s Processing triggers for man-db (2.12.0-3) ...
 88s Processing triggers for libc-bin (2.39-0ubuntu2) ...
 88s Reading package lists...
 88s Building dependency tree...
 88s Reading state information...
 89s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
 89s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
 89s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
 89s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
 89s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
 90s Reading package lists...
 90s Reading package lists...
 91s Building dependency tree...
 91s Reading state information...
 91s Calculating upgrade...
 91s The following packages have been kept back:
 91s   curl
 91s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
 91s Reading package lists...
 91s Building dependency tree...
 91s Reading state information...
 91s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
 94s autopkgtest [22:18:35]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024
 94s autopkgtest [22:18:35]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-titancna
 96s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-titancna 1.40.0-1 (dsc) [2230 B]
 96s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-titancna 1.40.0-1 (tar) [3866 kB]
 96s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-titancna 1.40.0-1 (diff) [2612 B]
 96s gpgv: Signature made Fri Dec  1 15:58:11 2023 UTC
 96s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
 96s gpgv:                issuer "tille@debian.org"
 96s gpgv: Can't check signature: No public key
 96s dpkg-source: warning: cannot verify inline signature for ./r-bioc-titancna_1.40.0-1.dsc: no acceptable signature found
 96s autopkgtest [22:18:37]: testing package r-bioc-titancna version 1.40.0-1
 96s autopkgtest [22:18:37]: build not needed
 98s autopkgtest [22:18:39]: test pkg-r-autopkgtest: preparing testbed
 99s Reading package lists...
 99s Building dependency tree...
 99s Reading state information...
 99s Starting pkgProblemResolver with broken count: 0
 99s Starting 2 pkgProblemResolver with broken count: 0
 99s Done
 99s The following additional packages will be installed:
 99s   build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu
 99s   cpp-powerpc64le-linux-gnu curl dctrl-tools fontconfig fontconfig-config
 99s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-powerpc64le-linux-gnu
 99s   g++-powerpc64le-linux-gnu gcc gcc-13 gcc-13-powerpc64le-linux-gnu
 99s   gcc-powerpc64le-linux-gnu gfortran gfortran-13
 99s   gfortran-13-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu
 99s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev
 99s   libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
 99s   libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
 99s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
 99s   libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
 99s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery liblapack-dev
 99s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
 99s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
 99s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
 99s   libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 libquadmath0 libreadline-dev
 99s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
 99s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
 99s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev node-html5shiv
 99s   pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
 99s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics
 99s   r-bioc-biocio r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings
 99s   r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb
 99s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
 99s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
 99s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
 99s   r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment
 99s   r-bioc-titancna r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc
 99s   r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops
 99s   r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11
 99s   r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr
 99s   r-cran-digest r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock
 99s   r-cran-foreach r-cran-formatr r-cran-futile.logger r-cran-futile.options
 99s   r-cran-generics r-cran-glue r-cran-hms r-cran-httr r-cran-iterators
 99s   r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle
 99s   r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats
 99s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig
 99s   r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr
 99s   r-cran-r6 r-cran-rappdirs r-cran-rcurl r-cran-restfulr r-cran-rjson
 99s   r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-stringi r-cran-stringr
 99s   r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8
 99s   r-cran-vctrs r-cran-withr r-cran-xml r-cran-xml2 r-cran-yaml rpcsvc-proto
 99s   unzip x11-common xdg-utils zip zlib1g-dev
 99s Suggested packages:
 99s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
 99s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
 99s   gdb-powerpc64le-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
 99s   liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev
 99s   libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev
 99s   libboost-contract1.83-dev libboost-coroutine1.83-dev
 99s   libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev
 99s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
 99s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
 99s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
 99s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
 99s   libboost-numpy1.83-dev libboost-program-options1.83-dev
 99s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
 99s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
 99s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
 99s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
 99s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
 99s   glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
 99s   tcl8.6 tk8.6 nodejs elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
 99s   texlive-base texlive-latex-base texlive-plain-generic
 99s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
 99s   texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db
 99s   r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-knitr
 99s   r-bioc-all r-cran-testthat r-cran-rmarkdown r-bioc-affy r-bioc-deseq2
 99s   r-bioc-annotate r-cran-bbmisc r-cran-doparallel r-bioc-shortread
 99s   r-cran-batchtools r-cran-mockery r-cran-webmockr r-cran-biocmanager
 99s   r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats
 99s   r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter
 99s   r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq
 99s   r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-bioc-snpstats
 99s   r-cran-ggplot2 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rstudioapi
 99s   r-cran-rmysql r-cran-shiny r-cran-lubridate r-cran-getopt r-cran-formattable
 99s   r-cran-nanotime r-cran-palmerpenguins r-cran-scales r-cran-survival
 99s   r-cran-units r-cran-vdiffr r-cran-rcpp r-cran-rmpi r-cran-rlecuyer
 99s   r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-evaluate
 99s   r-cran-here r-cran-htmltools r-cran-pkgbuild r-cran-pkgload
 99s Recommended packages:
 99s   bzip2-doc manpages manpages-dev libc-devtools javascript-common libpng-tools
 99s   r-recommended r-doc-html r-cran-testthat r-cran-callr r-cran-covr
 99s   r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-mockery
 99s   r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot
 99s   r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio r-cran-decor
 99s   r-cran-desc r-cran-ggplot2 r-cran-lobstr r-cran-scales r-cran-rcpp
 99s   r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils r-cran-r.utils
 99s   r-cran-xts r-cran-nanotime r-cran-zoo r-cran-rpostgresql r-cran-broom
 99s   r-cran-rmysql r-cran-unitizer r-cran-testit r-cran-survival r-cran-pkgload
 99s   r-cran-waldo r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf r-cran-lintr
 99s   r-cran-tidyverse r-cran-base64enc r-cran-markdown r-cran-r.devices
 99s   r-cran-sodium r-cran-lubridate r-cran-runit r-cran-fs r-cran-usethis
 99s   r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-mockr
 99s   r-cran-formattable r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl
 99s   libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
 99s The following packages will be REMOVED:
 99s   libcurl4 libpsl5
 99s The following NEW packages will be installed:
 99s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu
 99s   cpp-powerpc64le-linux-gnu dctrl-tools fontconfig fontconfig-config
 99s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-powerpc64le-linux-gnu
 99s   g++-powerpc64le-linux-gnu gcc gcc-13 gcc-13-powerpc64le-linux-gnu
 99s   gcc-powerpc64le-linux-gnu gfortran gfortran-13
 99s   gfortran-13-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu
 99s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev
 99s   libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
 99s   libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
 99s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
 99s   libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
 99s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery liblapack-dev
 99s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
 99s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
 99s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
 99s   libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 libquadmath0 libreadline-dev
 99s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
 99s   libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0
 99s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev node-html5shiv
 99s   pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
 99s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics
 99s   r-bioc-biocio r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings
 99s   r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb
 99s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
 99s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
 99s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
 99s   r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment
 99s   r-bioc-titancna r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc
 99s   r-cran-abind r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops
 99s   r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11
 99s   r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr
 99s   r-cran-digest r-cran-dplyr r-cran-fansi r-cran-fastmap r-cran-filelock
 99s   r-cran-foreach r-cran-formatr r-cran-futile.logger r-cran-futile.options
 99s   r-cran-generics r-cran-glue r-cran-hms r-cran-httr r-cran-iterators
 99s   r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle
 99s   r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats
 99s   r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig
 99s   r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr
 99s   r-cran-r6 r-cran-rappdirs r-cran-rcurl r-cran-restfulr r-cran-rjson
 99s   r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-stringi r-cran-stringr
 99s   r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8
 99s   r-cran-vctrs r-cran-withr r-cran-xml r-cran-xml2 r-cran-yaml rpcsvc-proto
 99s   unzip x11-common xdg-utils zip zlib1g-dev
 99s The following packages will be upgraded:
 99s   curl
100s 1 upgraded, 209 newly installed, 2 to remove and 0 not upgraded.
100s Need to get 266 MB/266 MB of archives.
100s After this operation, 809 MB of additional disk space will be used.
100s Get:1 /tmp/autopkgtest.ZJSNTK/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B]
100s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1 [59.0 kB]
100s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el curl ppc64el 8.5.0-2ubuntu7 [234 kB]
100s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu7 [428 kB]
100s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu2 [21.3 kB]
100s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el linux-libc-dev ppc64el 6.8.0-11.11 [1585 kB]
101s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB]
101s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1build1 [262 kB]
101s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3 [79.2 kB]
101s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB]
101s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu2 [2102 kB]
101s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3 [864 kB]
101s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1 [61.2 kB]
101s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [10.7 MB]
102s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-17ubuntu2 [1038 B]
102s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B]
102s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB]
102s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240303-1ubuntu1 [48.1 kB]
102s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB]
102s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240303-1ubuntu1 [32.4 kB]
102s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240303-1ubuntu1 [10.7 kB]
102s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240303-1ubuntu1 [2973 kB]
103s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240303-1ubuntu1 [1325 kB]
103s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240303-1ubuntu1 [2734 kB]
103s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240303-1ubuntu1 [1194 kB]
103s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240303-1ubuntu1 [158 kB]
103s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-17ubuntu2 [1581 kB]
103s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [20.6 MB]
104s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-17ubuntu2 [477 kB]
104s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B]
104s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B]
104s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-17ubuntu2 [2445 kB]
104s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [12.2 MB]
104s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-17ubuntu2 [14.5 kB]
104s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B]
104s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B]
104s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B]
104s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el dctrl-tools ppc64el 2.24-3build2 [70.6 kB]
104s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
104s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
104s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB]
104s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB]
104s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1ubuntu1 [192 kB]
104s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB]
104s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran-13-dev ppc64el 13.2.0-17ubuntu2 [604 kB]
104s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [11.2 MB]
105s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13 ppc64el 13.2.0-17ubuntu2 [10.3 kB]
105s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1030 B]
105s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran ppc64el 4:13.2.0-7ubuntu1 [1170 B]
105s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el icu-devtools ppc64el 74.2-1ubuntu1 [246 kB]
105s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB]
105s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas-dev ppc64el 3.12.0-3 [301 kB]
105s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost1.83-dev ppc64el 1.83.0-2ubuntu1 [15.3 MB]
105s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-dev ppc64el 1.83.0.1ubuntu2 [4312 B]
105s Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5ubuntu1 [51.2 kB]
105s Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB]
105s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB]
105s Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B]
105s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB]
105s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB]
105s Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3 [25.1 kB]
105s Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
105s Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB]
105s Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB]
105s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB]
105s Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build2 [49.3 kB]
105s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu-dev ppc64el 74.2-1ubuntu1 [12.5 MB]
105s Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB]
105s Get:69 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-2ubuntu1 [357 kB]
105s Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
105s Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B]
105s Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B]
105s Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
105s Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB]
105s Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack-dev ppc64el 3.12.0-3 [6100 kB]
106s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB]
106s Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libncurses-dev ppc64el 6.4+20240113-1ubuntu1 [485 kB]
106s Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2 [158 kB]
106s Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2 [21.4 kB]
106s Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.51.0+ds-4 [266 kB]
106s Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.51.0+ds-4 [49.5 kB]
106s Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.51.0+ds-4 [31.2 kB]
106s Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29 [13.5 kB]
106s Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29 [8710 B]
106s Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu1 [245 kB]
106s Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu1 [228 kB]
106s Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-posix3 ppc64el 10.42-4ubuntu1 [7016 B]
106s Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-dev ppc64el 10.42-4ubuntu1 [794 kB]
106s Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el libpkgconf3 ppc64el 1.8.1-2 [36.9 kB]
106s Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3ubuntu1 [902 kB]
106s Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el libpng-dev ppc64el 1.6.43-1 [327 kB]
106s Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el libreadline-dev ppc64el 8.2-3 [226 kB]
106s Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB]
106s Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build2 [18.5 kB]
106s Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB]
106s Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB]
106s Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB]
106s Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB]
106s Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB]
106s Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B]
106s Get:101 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB]
106s Get:102 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6 ppc64el 1:1.2.1-1.1 [198 kB]
106s Get:103 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
106s Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf-bin ppc64el 1.8.1-2 [22.0 kB]
106s Get:105 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf ppc64el 1.8.1-2 [16.7 kB]
106s Get:106 http://ftpmaster.internal/ubuntu noble/main ppc64el pkg-config ppc64el 1.8.1-2 [7170 B]
106s Get:107 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13 [192 kB]
106s Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu3 [192 kB]
106s Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
106s Get:110 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-core ppc64el 4.3.2-1build1 [27.4 MB]
110s Get:111 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma-dev ppc64el 5.4.5-0.3 [243 kB]
110s Get:112 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-dev all 4.3.2-1build1 [4336 B]
110s Get:113 http://ftpmaster.internal/ubuntu noble/universe ppc64el pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
110s Get:114 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocgenerics all 0.48.1-2 [595 kB]
110s Get:115 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biobase ppc64el 2.62.0-1 [2138 kB]
111s Get:116 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-s4vectors ppc64el 0.40.2+dfsg-1 [2079 kB]
111s Get:117 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-iranges ppc64el 2.36.0-1 [2263 kB]
111s Get:118 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dbi all 1.2.2-1 [823 kB]
111s Get:119 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bit ppc64el 4.0.5-1 [1089 kB]
111s Get:120 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bit64 ppc64el 4.0.5-1 [479 kB]
111s Get:121 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rlang ppc64el 1.1.3-1 [1696 kB]
112s Get:122 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cli ppc64el 3.6.2-1 [1405 kB]
112s Get:123 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-glue ppc64el 1.7.0-1 [155 kB]
112s Get:124 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
112s Get:125 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-vctrs ppc64el 0.6.5-1 [1399 kB]
112s Get:126 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-blob all 1.2.4-1 [49.8 kB]
112s Get:127 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fastmap ppc64el 1.1.1-1 [72.4 kB]
112s Get:128 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cachem ppc64el 1.0.8-1 [72.2 kB]
112s Get:129 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-memoise all 2.0.1-1 [53.9 kB]
112s Get:130 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
112s Get:131 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-plogr all 0.2.0-3build1 [15.1 kB]
112s Get:132 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cpp11 all 0.4.7-1 [266 kB]
112s Get:133 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rsqlite ppc64el 2.3.4-1 [1777 kB]
112s Get:134 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-curl ppc64el 5.2.0+dfsg-1 [192 kB]
112s Get:135 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-jsonlite ppc64el 1.8.8+dfsg-1 [449 kB]
112s Get:136 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-mime ppc64el 0.12-1 [36.1 kB]
112s Get:137 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-sys ppc64el 3.4.2-1 [44.7 kB]
112s Get:138 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-askpass ppc64el 1.2.0-1 [24.5 kB]
112s Get:139 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-openssl ppc64el 2.1.1+dfsg-2 [405 kB]
112s Get:140 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-r6 all 2.5.1-1 [99.0 kB]
112s Get:141 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-httr all 1.4.7+dfsg-1 [459 kB]
113s Get:142 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-png ppc64el 0.1-8-1 [44.1 kB]
113s Get:143 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
113s Get:144 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-xvector ppc64el 0.42.0-1 [626 kB]
113s Get:145 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bitops ppc64el 1.0-7-1 [30.0 kB]
113s Get:146 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rcurl ppc64el 1.98-1.14+dfsg-1 [796 kB]
113s Get:147 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
114s Get:148 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
115s Get:149 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-crayon all 1.5.2-1 [164 kB]
115s Get:150 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biostrings ppc64el 2.70.2+dfsg-1 [13.7 MB]
117s Get:151 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
117s Get:152 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
117s Get:153 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-generics all 0.1.3-1 [81.3 kB]
117s Get:154 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-magrittr ppc64el 2.0.3-1 [154 kB]
117s Get:155 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fansi ppc64el 1.0.5-1 [627 kB]
117s Get:156 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-utf8 ppc64el 1.2.4-1 [148 kB]
117s Get:157 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
117s Get:158 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tibble ppc64el 3.2.1+dfsg-2 [415 kB]
118s Get:159 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-withr all 2.5.0-1 [225 kB]
118s Get:160 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tidyselect ppc64el 1.2.0+dfsg-1 [218 kB]
118s Get:161 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dplyr ppc64el 1.1.4-1 [1516 kB]
118s Get:162 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-purrr ppc64el 1.0.2-1 [503 kB]
118s Get:163 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-stringi ppc64el 1.8.3-1 [919 kB]
118s Get:164 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-stringr all 1.5.1-1 [290 kB]
118s Get:165 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tidyr ppc64el 1.3.1-1 [1163 kB]
118s Get:166 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB]
118s Get:167 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-filelock ppc64el 1.0.3-1 [30.3 kB]
118s Get:168 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB]
118s Get:169 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocio all 1.12.0+dfsg-1 [213 kB]
118s Get:170 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-formatr all 1.14-1 [152 kB]
118s Get:171 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lambda.r all 1.2.4-2build1 [119 kB]
118s Get:172 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
118s Get:173 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
118s Get:174 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-snow all 1:0.4.4-2 [97.6 kB]
118s Get:175 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-codetools all 0.2-19-1 [90.5 kB]
118s Get:176 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bh all 1.84.0-1 [5962 B]
118s Get:177 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocparallel ppc64el 1.36.0-1 [1351 kB]
119s Get:178 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xml ppc64el 3.99-0.16.1-1 [1744 kB]
119s Get:179 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-hms all 1.1.3-1 [96.5 kB]
119s Get:180 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-prettyunits all 1.2.0-1 [162 kB]
119s Get:181 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-progress all 1.2.3-1 [91.9 kB]
119s Get:182 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-digest ppc64el 0.6.34-1 [198 kB]
119s Get:183 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rappdirs ppc64el 0.3.3-1 [47.7 kB]
119s Get:184 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xml2 ppc64el 1.3.6-1 [328 kB]
119s Get:185 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biomart all 2.58.2+dfsg-1 [433 kB]
119s Get:186 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicranges ppc64el 1.54.1+dfsg-1 [1822 kB]
119s Get:187 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-rhtslib ppc64el 2.4.1+dfsg-1 [1548 kB]
119s Get:188 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-rsamtools ppc64el 2.18.0+dfsg-1 [3801 kB]
120s Get:189 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-matrixstats ppc64el 1.2.0-1 [530 kB]
120s Get:190 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
120s Get:191 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lattice ppc64el 0.22-5-1 [1343 kB]
120s Get:192 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-matrix ppc64el 1.6-5-1 [4057 kB]
121s Get:193 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-abind all 1.4-5-2 [63.6 kB]
121s Get:194 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-s4arrays ppc64el 1.2.0+dfsg-1 [502 kB]
121s Get:195 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-sparsearray ppc64el 1.2.4+dfsg-1 [1222 kB]
121s Get:196 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-delayedarray ppc64el 0.28.0+dfsg-1 [1786 kB]
121s Get:197 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
121s Get:198 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicalignments ppc64el 1.38.2-1 [2139 kB]
122s Get:199 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-littler ppc64el 0.3.19-1 [95.1 kB]
122s Get:200 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rjson ppc64el 0.2.21-1 [144 kB]
122s Get:201 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-yaml ppc64el 2.3.8-1 [139 kB]
122s Get:202 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-restfulr ppc64el 0.0.15-1 [380 kB]
122s Get:203 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-rtracklayer ppc64el 1.62.0-1 [5148 kB]
123s Get:204 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-bsgenome all 1.70.2-1 [6975 kB]
123s Get:205 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB]
123s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el r-bioc-variantannotation ppc64el 1.48.1-1build1 [3656 kB]
124s Get:207 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-iterators all 1.0.14-1 [336 kB]
124s Get:208 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-foreach all 1.5.2-1 [124 kB]
124s Get:209 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-data.table ppc64el 1.14.10+dfsg-1 [1909 kB]
124s Get:210 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-titancna ppc64el 1.40.0-1 [3940 kB]
124s Preconfiguring packages ...
124s Fetched 266 MB in 24s (10.9 MB/s)
124s dpkg: libpsl5:ppc64el: dependency problems, but removing anyway as you requested:
124s  wget depends on libpsl5 (>= 0.16.0).
124s  libcurl4:ppc64el depends on libpsl5 (>= 0.16.0).
124s  libcurl3-gnutls:ppc64el depends on libpsl5 (>= 0.16.0).
124s 
124s (Reading database ... 
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124s Removing libpsl5:ppc64el (0.21.2-1build1) ...
124s Selecting previously unselected package libpsl5t64:ppc64el.
124s (Reading database ... 
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124s Preparing to unpack .../libpsl5t64_0.21.2-1.1_ppc64el.deb ...
124s Unpacking libpsl5t64:ppc64el (0.21.2-1.1) ...
124s Preparing to unpack .../curl_8.5.0-2ubuntu7_ppc64el.deb ...
124s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
124s (Reading database ... 
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124s Removing libcurl4:ppc64el (8.5.0-2ubuntu2) ...
124s Selecting previously unselected package libcurl4t64:ppc64el.
124s (Reading database ... 
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124s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_ppc64el.deb ...
124s Unpacking libcurl4t64:ppc64el (8.5.0-2ubuntu7) ...
125s Selecting previously unselected package libc-dev-bin.
125s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_ppc64el.deb ...
125s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
125s Selecting previously unselected package linux-libc-dev:ppc64el.
125s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_ppc64el.deb ...
125s Unpacking linux-libc-dev:ppc64el (6.8.0-11.11) ...
125s Selecting previously unselected package libcrypt-dev:ppc64el.
125s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ...
125s Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) ...
125s Selecting previously unselected package libtirpc-dev:ppc64el.
125s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_ppc64el.deb ...
125s Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1build1) ...
125s Selecting previously unselected package libnsl-dev:ppc64el.
125s Preparing to unpack .../005-libnsl-dev_1.3.0-3_ppc64el.deb ...
125s Unpacking libnsl-dev:ppc64el (1.3.0-3) ...
125s Selecting previously unselected package rpcsvc-proto.
125s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ...
125s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
125s Selecting previously unselected package libc6-dev:ppc64el.
125s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_ppc64el.deb ...
125s Unpacking libc6-dev:ppc64el (2.39-0ubuntu2) ...
125s Selecting previously unselected package libisl23:ppc64el.
125s Preparing to unpack .../008-libisl23_0.26-3_ppc64el.deb ...
125s Unpacking libisl23:ppc64el (0.26-3) ...
125s Selecting previously unselected package libmpc3:ppc64el.
125s Preparing to unpack .../009-libmpc3_1.3.1-1_ppc64el.deb ...
125s Unpacking libmpc3:ppc64el (1.3.1-1) ...
125s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu.
125s Preparing to unpack .../010-cpp-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ...
125s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
125s Selecting previously unselected package cpp-13.
125s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_ppc64el.deb ...
125s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
125s Selecting previously unselected package cpp-powerpc64le-linux-gnu.
125s Preparing to unpack .../012-cpp-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
125s Unpacking cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
125s Selecting previously unselected package cpp.
125s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
125s Unpacking cpp (4:13.2.0-7ubuntu1) ...
125s Selecting previously unselected package libcc1-0:ppc64el.
125s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_ppc64el.deb ...
125s Unpacking libcc1-0:ppc64el (14-20240303-1ubuntu1) ...
125s Selecting previously unselected package libgomp1:ppc64el.
125s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ...
125s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ...
125s Selecting previously unselected package libitm1:ppc64el.
125s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_ppc64el.deb ...
125s Unpacking libitm1:ppc64el (14-20240303-1ubuntu1) ...
125s Selecting previously unselected package libatomic1:ppc64el.
125s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_ppc64el.deb ...
125s Unpacking libatomic1:ppc64el (14-20240303-1ubuntu1) ...
125s Selecting previously unselected package libasan8:ppc64el.
125s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_ppc64el.deb ...
125s Unpacking libasan8:ppc64el (14-20240303-1ubuntu1) ...
125s Selecting previously unselected package liblsan0:ppc64el.
125s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_ppc64el.deb ...
125s Unpacking liblsan0:ppc64el (14-20240303-1ubuntu1) ...
125s Selecting previously unselected package libtsan2:ppc64el.
125s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_ppc64el.deb ...
125s Unpacking libtsan2:ppc64el (14-20240303-1ubuntu1) ...
126s Selecting previously unselected package libubsan1:ppc64el.
126s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_ppc64el.deb ...
126s Unpacking libubsan1:ppc64el (14-20240303-1ubuntu1) ...
126s Selecting previously unselected package libquadmath0:ppc64el.
126s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_ppc64el.deb ...
126s Unpacking libquadmath0:ppc64el (14-20240303-1ubuntu1) ...
126s Selecting previously unselected package libgcc-13-dev:ppc64el.
126s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_ppc64el.deb ...
126s Unpacking libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ...
126s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu.
126s Preparing to unpack .../024-gcc-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ...
126s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
126s Selecting previously unselected package gcc-13.
126s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_ppc64el.deb ...
126s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
126s Selecting previously unselected package gcc-powerpc64le-linux-gnu.
126s Preparing to unpack .../026-gcc-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
126s Unpacking gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
126s Selecting previously unselected package gcc.
126s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
126s Unpacking gcc (4:13.2.0-7ubuntu1) ...
126s Selecting previously unselected package libstdc++-13-dev:ppc64el.
126s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_ppc64el.deb ...
126s Unpacking libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ...
126s Selecting previously unselected package g++-13-powerpc64le-linux-gnu.
126s Preparing to unpack .../029-g++-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ...
126s Unpacking g++-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
127s Selecting previously unselected package g++-13.
127s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_ppc64el.deb ...
127s Unpacking g++-13 (13.2.0-17ubuntu2) ...
127s Selecting previously unselected package g++-powerpc64le-linux-gnu.
127s Preparing to unpack .../031-g++-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
127s Unpacking g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
127s Selecting previously unselected package g++.
127s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
127s Unpacking g++ (4:13.2.0-7ubuntu1) ...
127s Selecting previously unselected package build-essential.
127s Preparing to unpack .../033-build-essential_12.10ubuntu1_ppc64el.deb ...
127s Unpacking build-essential (12.10ubuntu1) ...
127s Selecting previously unselected package dctrl-tools.
127s Preparing to unpack .../034-dctrl-tools_2.24-3build2_ppc64el.deb ...
127s Unpacking dctrl-tools (2.24-3build2) ...
127s Selecting previously unselected package fonts-dejavu-mono.
127s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
127s Unpacking fonts-dejavu-mono (2.37-8) ...
127s Selecting previously unselected package fonts-dejavu-core.
127s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
127s Unpacking fonts-dejavu-core (2.37-8) ...
127s Selecting previously unselected package fontconfig-config.
127s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ...
127s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
127s Selecting previously unselected package libfontconfig1:ppc64el.
127s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ...
127s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
127s Selecting previously unselected package fontconfig.
127s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_ppc64el.deb ...
127s Unpacking fontconfig (2.15.0-1ubuntu1) ...
127s Selecting previously unselected package libgfortran5:ppc64el.
127s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ...
127s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
127s Selecting previously unselected package libgfortran-13-dev:ppc64el.
127s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_ppc64el.deb ...
127s Unpacking libgfortran-13-dev:ppc64el (13.2.0-17ubuntu2) ...
127s Selecting previously unselected package gfortran-13-powerpc64le-linux-gnu.
127s Preparing to unpack .../042-gfortran-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ...
127s Unpacking gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
127s Selecting previously unselected package gfortran-13.
127s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_ppc64el.deb ...
127s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
127s Selecting previously unselected package gfortran-powerpc64le-linux-gnu.
127s Preparing to unpack .../044-gfortran-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
127s Unpacking gfortran-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
127s Selecting previously unselected package gfortran.
127s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_ppc64el.deb ...
127s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
127s Selecting previously unselected package icu-devtools.
127s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_ppc64el.deb ...
127s Unpacking icu-devtools (74.2-1ubuntu1) ...
127s Selecting previously unselected package libblas3:ppc64el.
127s Preparing to unpack .../047-libblas3_3.12.0-3_ppc64el.deb ...
127s Unpacking libblas3:ppc64el (3.12.0-3) ...
127s Selecting previously unselected package libblas-dev:ppc64el.
127s Preparing to unpack .../048-libblas-dev_3.12.0-3_ppc64el.deb ...
127s Unpacking libblas-dev:ppc64el (3.12.0-3) ...
127s Selecting previously unselected package libboost1.83-dev:ppc64el.
127s Preparing to unpack .../049-libboost1.83-dev_1.83.0-2ubuntu1_ppc64el.deb ...
127s Unpacking libboost1.83-dev:ppc64el (1.83.0-2ubuntu1) ...
130s Selecting previously unselected package libboost-dev:ppc64el.
130s Preparing to unpack .../050-libboost-dev_1.83.0.1ubuntu2_ppc64el.deb ...
130s Unpacking libboost-dev:ppc64el (1.83.0.1ubuntu2) ...
130s Selecting previously unselected package libbz2-dev:ppc64el.
130s Preparing to unpack .../051-libbz2-dev_1.0.8-5ubuntu1_ppc64el.deb ...
130s Unpacking libbz2-dev:ppc64el (1.0.8-5ubuntu1) ...
130s Selecting previously unselected package libpixman-1-0:ppc64el.
130s Preparing to unpack .../052-libpixman-1-0_0.42.2-1_ppc64el.deb ...
130s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ...
130s Selecting previously unselected package libxcb-render0:ppc64el.
130s Preparing to unpack .../053-libxcb-render0_1.15-1_ppc64el.deb ...
130s Unpacking libxcb-render0:ppc64el (1.15-1) ...
130s Selecting previously unselected package libxcb-shm0:ppc64el.
130s Preparing to unpack .../054-libxcb-shm0_1.15-1_ppc64el.deb ...
130s Unpacking libxcb-shm0:ppc64el (1.15-1) ...
130s Selecting previously unselected package libxrender1:ppc64el.
130s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ...
130s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ...
130s Selecting previously unselected package libcairo2:ppc64el.
130s Preparing to unpack .../056-libcairo2_1.18.0-1_ppc64el.deb ...
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130s Selecting previously unselected package libdatrie1:ppc64el.
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130s Selecting previously unselected package libdeflate0:ppc64el.
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130s Selecting previously unselected package libgraphite2-3:ppc64el.
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130s Selecting previously unselected package libharfbuzz0b:ppc64el.
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130s Selecting previously unselected package x11-common.
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131s Selecting previously unselected package libice6:ppc64el.
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131s Selecting previously unselected package libicu-dev:ppc64el.
131s Preparing to unpack .../063-libicu-dev_74.2-1ubuntu1_ppc64el.deb ...
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131s Selecting previously unselected package libjpeg-turbo8:ppc64el.
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131s Selecting previously unselected package libjpeg8:ppc64el.
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131s Selecting previously unselected package libjpeg8-dev:ppc64el.
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131s Selecting previously unselected package libjpeg-dev:ppc64el.
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131s Selecting previously unselected package libjs-jquery.
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131s Selecting previously unselected package liblapack3:ppc64el.
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131s Selecting previously unselected package liblerc4:ppc64el.
131s Preparing to unpack .../072-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ...
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131s Selecting previously unselected package libncurses-dev:ppc64el.
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131s Selecting previously unselected package libthai-data.
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131s Selecting previously unselected package libthai0:ppc64el.
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131s Selecting previously unselected package libpango-1.0-0:ppc64el.
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131s Selecting previously unselected package libpangoft2-1.0-0:ppc64el.
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131s Selecting previously unselected package libpangocairo-1.0-0:ppc64el.
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131s Selecting previously unselected package libpaper1:ppc64el.
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131s Selecting previously unselected package libpaper-utils.
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131s Selecting previously unselected package libpcre2-16-0:ppc64el.
131s Preparing to unpack .../081-libpcre2-16-0_10.42-4ubuntu1_ppc64el.deb ...
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131s Selecting previously unselected package libpcre2-32-0:ppc64el.
132s Preparing to unpack .../082-libpcre2-32-0_10.42-4ubuntu1_ppc64el.deb ...
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132s Selecting previously unselected package libpcre2-posix3:ppc64el.
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132s Selecting previously unselected package libpcre2-dev:ppc64el.
132s Preparing to unpack .../084-libpcre2-dev_10.42-4ubuntu1_ppc64el.deb ...
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132s Selecting previously unselected package libpkgconf3:ppc64el.
132s Preparing to unpack .../085-libpkgconf3_1.8.1-2_ppc64el.deb ...
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132s Selecting previously unselected package zlib1g-dev:ppc64el.
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132s Selecting previously unselected package libpng-dev:ppc64el.
132s Preparing to unpack .../087-libpng-dev_1.6.43-1_ppc64el.deb ...
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132s Selecting previously unselected package libreadline-dev:ppc64el.
132s Preparing to unpack .../088-libreadline-dev_8.2-3_ppc64el.deb ...
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132s Selecting previously unselected package libsharpyuv0:ppc64el.
132s Preparing to unpack .../089-libsharpyuv0_1.3.2-0.4_ppc64el.deb ...
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132s Selecting previously unselected package libsm6:ppc64el.
132s Preparing to unpack .../090-libsm6_2%3a1.2.3-1build2_ppc64el.deb ...
132s Unpacking libsm6:ppc64el (2:1.2.3-1build2) ...
132s Selecting previously unselected package libtcl8.6:ppc64el.
132s Preparing to unpack .../091-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ...
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132s Selecting previously unselected package libjbig0:ppc64el.
132s Preparing to unpack .../092-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ...
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132s Selecting previously unselected package libwebp7:ppc64el.
132s Preparing to unpack .../093-libwebp7_1.3.2-0.4_ppc64el.deb ...
132s Unpacking libwebp7:ppc64el (1.3.2-0.4) ...
132s Selecting previously unselected package libtiff6:ppc64el.
132s Preparing to unpack .../094-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ...
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132s Selecting previously unselected package libxft2:ppc64el.
132s Preparing to unpack .../095-libxft2_2.3.6-1_ppc64el.deb ...
132s Unpacking libxft2:ppc64el (2.3.6-1) ...
132s Selecting previously unselected package libxss1:ppc64el.
132s Preparing to unpack .../096-libxss1_1%3a1.2.3-1build2_ppc64el.deb ...
132s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ...
132s Selecting previously unselected package libtk8.6:ppc64el.
132s Preparing to unpack .../097-libtk8.6_8.6.13-2_ppc64el.deb ...
132s Unpacking libtk8.6:ppc64el (8.6.13-2) ...
132s Selecting previously unselected package libxt6:ppc64el.
132s Preparing to unpack .../098-libxt6_1%3a1.2.1-1.1_ppc64el.deb ...
132s Unpacking libxt6:ppc64el (1:1.2.1-1.1) ...
132s Selecting previously unselected package node-html5shiv.
132s Preparing to unpack .../099-node-html5shiv_3.7.3+dfsg-5_all.deb ...
132s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
132s Selecting previously unselected package pkgconf-bin.
132s Preparing to unpack .../100-pkgconf-bin_1.8.1-2_ppc64el.deb ...
132s Unpacking pkgconf-bin (1.8.1-2) ...
132s Selecting previously unselected package pkgconf:ppc64el.
132s Preparing to unpack .../101-pkgconf_1.8.1-2_ppc64el.deb ...
132s Unpacking pkgconf:ppc64el (1.8.1-2) ...
132s Selecting previously unselected package pkg-config:ppc64el.
132s Preparing to unpack .../102-pkg-config_1.8.1-2_ppc64el.deb ...
132s Unpacking pkg-config:ppc64el (1.8.1-2) ...
132s Selecting previously unselected package zip.
132s Preparing to unpack .../103-zip_3.0-13_ppc64el.deb ...
132s Unpacking zip (3.0-13) ...
132s Selecting previously unselected package unzip.
132s Preparing to unpack .../104-unzip_6.0-28ubuntu3_ppc64el.deb ...
132s Unpacking unzip (6.0-28ubuntu3) ...
132s Selecting previously unselected package xdg-utils.
132s Preparing to unpack .../105-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
132s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
132s Selecting previously unselected package r-base-core.
132s Preparing to unpack .../106-r-base-core_4.3.2-1build1_ppc64el.deb ...
132s Unpacking r-base-core (4.3.2-1build1) ...
133s Selecting previously unselected package liblzma-dev:ppc64el.
133s Preparing to unpack .../107-liblzma-dev_5.4.5-0.3_ppc64el.deb ...
133s Unpacking liblzma-dev:ppc64el (5.4.5-0.3) ...
133s Selecting previously unselected package r-base-dev.
133s Preparing to unpack .../108-r-base-dev_4.3.2-1build1_all.deb ...
133s Unpacking r-base-dev (4.3.2-1build1) ...
133s Selecting previously unselected package pkg-r-autopkgtest.
133s Preparing to unpack .../109-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
133s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
133s Selecting previously unselected package r-bioc-biocgenerics.
133s Preparing to unpack .../110-r-bioc-biocgenerics_0.48.1-2_all.deb ...
133s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
133s Selecting previously unselected package r-bioc-biobase.
133s Preparing to unpack .../111-r-bioc-biobase_2.62.0-1_ppc64el.deb ...
133s Unpacking r-bioc-biobase (2.62.0-1) ...
133s Selecting previously unselected package r-bioc-s4vectors.
133s Preparing to unpack .../112-r-bioc-s4vectors_0.40.2+dfsg-1_ppc64el.deb ...
133s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
133s Selecting previously unselected package r-bioc-iranges.
133s Preparing to unpack .../113-r-bioc-iranges_2.36.0-1_ppc64el.deb ...
133s Unpacking r-bioc-iranges (2.36.0-1) ...
133s Selecting previously unselected package r-cran-dbi.
133s Preparing to unpack .../114-r-cran-dbi_1.2.2-1_all.deb ...
133s Unpacking r-cran-dbi (1.2.2-1) ...
133s Selecting previously unselected package r-cran-bit.
133s Preparing to unpack .../115-r-cran-bit_4.0.5-1_ppc64el.deb ...
133s Unpacking r-cran-bit (4.0.5-1) ...
133s Selecting previously unselected package r-cran-bit64.
133s Preparing to unpack .../116-r-cran-bit64_4.0.5-1_ppc64el.deb ...
133s Unpacking r-cran-bit64 (4.0.5-1) ...
133s Selecting previously unselected package r-cran-rlang.
133s Preparing to unpack .../117-r-cran-rlang_1.1.3-1_ppc64el.deb ...
133s Unpacking r-cran-rlang (1.1.3-1) ...
133s Selecting previously unselected package r-cran-cli.
133s Preparing to unpack .../118-r-cran-cli_3.6.2-1_ppc64el.deb ...
133s Unpacking r-cran-cli (3.6.2-1) ...
133s Selecting previously unselected package r-cran-glue.
133s Preparing to unpack .../119-r-cran-glue_1.7.0-1_ppc64el.deb ...
133s Unpacking r-cran-glue (1.7.0-1) ...
133s Selecting previously unselected package r-cran-lifecycle.
133s Preparing to unpack .../120-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
133s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
133s Selecting previously unselected package r-cran-vctrs.
133s Preparing to unpack .../121-r-cran-vctrs_0.6.5-1_ppc64el.deb ...
133s Unpacking r-cran-vctrs (0.6.5-1) ...
133s Selecting previously unselected package r-cran-blob.
133s Preparing to unpack .../122-r-cran-blob_1.2.4-1_all.deb ...
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133s Selecting previously unselected package r-cran-fastmap.
133s Preparing to unpack .../123-r-cran-fastmap_1.1.1-1_ppc64el.deb ...
133s Unpacking r-cran-fastmap (1.1.1-1) ...
133s Selecting previously unselected package r-cran-cachem.
133s Preparing to unpack .../124-r-cran-cachem_1.0.8-1_ppc64el.deb ...
133s Unpacking r-cran-cachem (1.0.8-1) ...
133s Selecting previously unselected package r-cran-memoise.
133s Preparing to unpack .../125-r-cran-memoise_2.0.1-1_all.deb ...
133s Unpacking r-cran-memoise (2.0.1-1) ...
133s Selecting previously unselected package r-cran-pkgconfig.
133s Preparing to unpack .../126-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
133s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
133s Selecting previously unselected package r-cran-plogr.
133s Preparing to unpack .../127-r-cran-plogr_0.2.0-3build1_all.deb ...
133s Unpacking r-cran-plogr (0.2.0-3build1) ...
133s Selecting previously unselected package r-cran-cpp11.
133s Preparing to unpack .../128-r-cran-cpp11_0.4.7-1_all.deb ...
133s Unpacking r-cran-cpp11 (0.4.7-1) ...
133s Selecting previously unselected package r-cran-rsqlite.
133s Preparing to unpack .../129-r-cran-rsqlite_2.3.4-1_ppc64el.deb ...
133s Unpacking r-cran-rsqlite (2.3.4-1) ...
133s Selecting previously unselected package r-cran-curl.
133s Preparing to unpack .../130-r-cran-curl_5.2.0+dfsg-1_ppc64el.deb ...
133s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
133s Selecting previously unselected package r-cran-jsonlite.
133s Preparing to unpack .../131-r-cran-jsonlite_1.8.8+dfsg-1_ppc64el.deb ...
133s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
133s Selecting previously unselected package r-cran-mime.
133s Preparing to unpack .../132-r-cran-mime_0.12-1_ppc64el.deb ...
133s Unpacking r-cran-mime (0.12-1) ...
133s Selecting previously unselected package r-cran-sys.
133s Preparing to unpack .../133-r-cran-sys_3.4.2-1_ppc64el.deb ...
133s Unpacking r-cran-sys (3.4.2-1) ...
133s Selecting previously unselected package r-cran-askpass.
133s Preparing to unpack .../134-r-cran-askpass_1.2.0-1_ppc64el.deb ...
133s Unpacking r-cran-askpass (1.2.0-1) ...
133s Selecting previously unselected package r-cran-openssl.
133s Preparing to unpack .../135-r-cran-openssl_2.1.1+dfsg-2_ppc64el.deb ...
133s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
133s Selecting previously unselected package r-cran-r6.
133s Preparing to unpack .../136-r-cran-r6_2.5.1-1_all.deb ...
133s Unpacking r-cran-r6 (2.5.1-1) ...
133s Selecting previously unselected package r-cran-httr.
133s Preparing to unpack .../137-r-cran-httr_1.4.7+dfsg-1_all.deb ...
133s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
133s Selecting previously unselected package r-cran-png.
133s Preparing to unpack .../138-r-cran-png_0.1-8-1_ppc64el.deb ...
133s Unpacking r-cran-png (0.1-8-1) ...
133s Selecting previously unselected package r-bioc-zlibbioc.
133s Preparing to unpack .../139-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
133s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
134s Selecting previously unselected package r-bioc-xvector.
134s Preparing to unpack .../140-r-bioc-xvector_0.42.0-1_ppc64el.deb ...
134s Unpacking r-bioc-xvector (0.42.0-1) ...
134s Selecting previously unselected package r-cran-bitops.
134s Preparing to unpack .../141-r-cran-bitops_1.0-7-1_ppc64el.deb ...
134s Unpacking r-cran-bitops (1.0-7-1) ...
134s Selecting previously unselected package r-cran-rcurl.
134s Preparing to unpack .../142-r-cran-rcurl_1.98-1.14+dfsg-1_ppc64el.deb ...
134s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
134s Selecting previously unselected package r-bioc-genomeinfodbdata.
134s Preparing to unpack .../143-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
134s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
134s Selecting previously unselected package r-bioc-genomeinfodb.
134s Preparing to unpack .../144-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
134s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
134s Selecting previously unselected package r-cran-crayon.
134s Preparing to unpack .../145-r-cran-crayon_1.5.2-1_all.deb ...
134s Unpacking r-cran-crayon (1.5.2-1) ...
134s Selecting previously unselected package r-bioc-biostrings.
134s Preparing to unpack .../146-r-bioc-biostrings_2.70.2+dfsg-1_ppc64el.deb ...
134s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
134s Selecting previously unselected package r-bioc-keggrest.
134s Preparing to unpack .../147-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
134s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
134s Selecting previously unselected package r-bioc-annotationdbi.
134s Preparing to unpack .../148-r-bioc-annotationdbi_1.64.1-1_all.deb ...
134s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
134s Selecting previously unselected package r-cran-generics.
134s Preparing to unpack .../149-r-cran-generics_0.1.3-1_all.deb ...
134s Unpacking r-cran-generics (0.1.3-1) ...
134s Selecting previously unselected package r-cran-magrittr.
134s Preparing to unpack .../150-r-cran-magrittr_2.0.3-1_ppc64el.deb ...
134s Unpacking r-cran-magrittr (2.0.3-1) ...
134s Selecting previously unselected package r-cran-fansi.
134s Preparing to unpack .../151-r-cran-fansi_1.0.5-1_ppc64el.deb ...
134s Unpacking r-cran-fansi (1.0.5-1) ...
134s Selecting previously unselected package r-cran-utf8.
134s Preparing to unpack .../152-r-cran-utf8_1.2.4-1_ppc64el.deb ...
134s Unpacking r-cran-utf8 (1.2.4-1) ...
134s Selecting previously unselected package r-cran-pillar.
134s Preparing to unpack .../153-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
134s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
134s Selecting previously unselected package r-cran-tibble.
134s Preparing to unpack .../154-r-cran-tibble_3.2.1+dfsg-2_ppc64el.deb ...
134s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
134s Selecting previously unselected package r-cran-withr.
134s Preparing to unpack .../155-r-cran-withr_2.5.0-1_all.deb ...
134s Unpacking r-cran-withr (2.5.0-1) ...
134s Selecting previously unselected package r-cran-tidyselect.
134s Preparing to unpack .../156-r-cran-tidyselect_1.2.0+dfsg-1_ppc64el.deb ...
134s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
134s Selecting previously unselected package r-cran-dplyr.
134s Preparing to unpack .../157-r-cran-dplyr_1.1.4-1_ppc64el.deb ...
134s Unpacking r-cran-dplyr (1.1.4-1) ...
134s Selecting previously unselected package r-cran-purrr.
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134s Selecting previously unselected package r-cran-stringi.
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134s Selecting previously unselected package r-cran-stringr.
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134s Selecting previously unselected package r-cran-tidyr.
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134s Selecting previously unselected package r-cran-dbplyr.
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134s Selecting previously unselected package r-cran-filelock.
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134s Unpacking r-cran-filelock (1.0.3-1) ...
134s Selecting previously unselected package r-bioc-biocfilecache.
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134s Selecting previously unselected package r-bioc-biocio.
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134s Selecting previously unselected package r-cran-formatr.
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134s Unpacking r-cran-formatr (1.14-1) ...
135s Selecting previously unselected package r-cran-lambda.r.
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135s Selecting previously unselected package r-cran-futile.options.
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135s Selecting previously unselected package r-cran-futile.logger.
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135s Selecting previously unselected package r-cran-snow.
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135s Selecting previously unselected package r-cran-codetools.
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135s Selecting previously unselected package r-cran-bh.
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135s Selecting previously unselected package r-bioc-biocparallel.
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135s Selecting previously unselected package r-cran-xml.
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135s Selecting previously unselected package r-cran-hms.
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135s Selecting previously unselected package r-cran-prettyunits.
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135s Selecting previously unselected package r-cran-digest.
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135s Selecting previously unselected package r-cran-rappdirs.
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135s Selecting previously unselected package r-cran-xml2.
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135s Selecting previously unselected package r-bioc-biomart.
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135s Selecting previously unselected package r-bioc-genomicranges.
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135s Selecting previously unselected package r-bioc-rhtslib.
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135s Selecting previously unselected package r-bioc-rsamtools.
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135s Selecting previously unselected package r-cran-matrixstats.
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135s Selecting previously unselected package r-bioc-matrixgenerics.
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135s Selecting previously unselected package r-cran-lattice.
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135s Selecting previously unselected package r-bioc-s4arrays.
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135s Selecting previously unselected package r-bioc-genomicalignments.
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135s Selecting previously unselected package r-cran-littler.
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135s Selecting previously unselected package r-cran-rjson.
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139s 
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139s Setting up r-cran-futile.options (1.0.1-3build1) ...
139s Setting up r-cran-lattice (0.22-5-1) ...
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139s Setting up r-cran-r6 (2.5.1-1) ...
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139s Setting up r-cran-rappdirs (0.3.3-1) ...
139s Setting up r-cran-filelock (1.0.3-1) ...
139s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
139s Setting up g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
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139s Setting up r-cran-codetools (0.2-19-1) ...
139s Setting up g++-13 (13.2.0-17ubuntu2) ...
139s Setting up r-bioc-biocgenerics (0.48.1-2) ...
139s Setting up r-cran-rlang (1.1.3-1) ...
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139s Setting up r-cran-dbi (1.2.2-1) ...
139s Setting up r-cran-foreach (1.5.2-1) ...
139s Setting up r-cran-prettyunits (1.2.0-1) ...
139s Setting up r-cran-fansi (1.0.5-1) ...
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139s Setting up r-cran-data.table (1.14.10+dfsg-1) ...
139s Setting up r-cran-glue (1.7.0-1) ...
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139s Setting up r-cran-cli (3.6.2-1) ...
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139s Setting up r-cran-bitops (1.0-7-1) ...
139s Setting up r-cran-bit64 (4.0.5-1) ...
139s Setting up gcc (4:13.2.0-7ubuntu1) ...
140s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
140s Setting up r-cran-askpass (1.2.0-1) ...
140s Setting up r-cran-fastmap (1.1.1-1) ...
140s Setting up r-cran-png (0.1-8-1) ...
140s Setting up r-bioc-biobase (2.62.0-1) ...
140s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
140s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
140s Setting up r-cran-utf8 (1.2.4-1) ...
140s Setting up gfortran-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
140s Setting up r-cran-stringi (1.8.3-1) ...
140s Setting up r-cran-cpp11 (0.4.7-1) ...
140s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
140s Setting up r-cran-futile.logger (1.4.3-4build1) ...
140s Setting up r-cran-matrix (1.6-5-1) ...
140s Setting up g++ (4:13.2.0-7ubuntu1) ...
140s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
140s Setting up r-cran-cachem (1.0.8-1) ...
140s Setting up build-essential (12.10ubuntu1) ...
140s Setting up r-bioc-iranges (2.36.0-1) ...
140s Setting up r-cran-rjson (0.2.21-1) ...
140s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
140s Setting up r-cran-restfulr (0.0.15-1) ...
140s Setting up r-cran-vctrs (0.6.5-1) ...
140s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
140s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
140s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
140s Setting up r-cran-stringr (1.5.1-1) ...
140s Setting up r-bioc-biocparallel (1.36.0-1) ...
140s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
140s Setting up r-cran-xml2 (1.3.6-1) ...
140s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
140s Setting up r-bioc-biocio (1.12.0+dfsg-1) ...
140s Setting up gfortran (4:13.2.0-7ubuntu1) ...
140s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
140s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
140s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
140s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
140s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
140s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
140s Setting up r-cran-httr (1.4.7+dfsg-1) ...
140s Setting up r-cran-hms (1.1.3-1) ...
140s Setting up r-cran-memoise (2.0.1-1) ...
140s Setting up r-cran-purrr (1.0.2-1) ...
140s Setting up r-cran-blob (1.2.4-1) ...
140s Setting up r-bioc-xvector (0.42.0-1) ...
140s Setting up r-cran-dplyr (1.1.4-1) ...
140s Setting up r-cran-rsqlite (2.3.4-1) ...
140s Setting up r-cran-progress (1.2.3-1) ...
140s Setting up r-base-dev (4.3.2-1build1) ...
140s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
140s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
140s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
140s Setting up r-cran-tidyr (1.3.1-1) ...
140s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
140s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
140s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ...
140s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
140s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
140s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ...
140s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
140s Setting up r-bioc-annotationdbi (1.64.1-1) ...
140s Setting up r-bioc-biomart (2.58.2+dfsg-1) ...
140s Setting up r-bioc-genomicalignments (1.38.2-1) ...
140s Setting up r-bioc-rtracklayer (1.62.0-1) ...
140s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
140s Setting up r-bioc-bsgenome (1.70.2-1) ...
140s Setting up r-bioc-variantannotation (1.48.1-1build1) ...
140s Setting up r-bioc-titancna (1.40.0-1) ...
140s Setting up autopkgtest-satdep (0) ...
140s Processing triggers for man-db (2.12.0-3) ...
142s Processing triggers for install-info (7.1-3) ...
142s Processing triggers for libc-bin (2.39-0ubuntu2) ...
148s (Reading database ... 100591 files and directories currently installed.)
148s Removing autopkgtest-satdep (0) ...
148s autopkgtest [22:19:29]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
148s autopkgtest [22:19:29]: test pkg-r-autopkgtest: [-----------------------
149s Test: Try to load the R library TitanCNA
149s 
149s R version 4.3.2 (2023-10-31) -- "Eye Holes"
149s Copyright (C) 2023 The R Foundation for Statistical Computing
149s Platform: powerpc64le-unknown-linux-gnu (64-bit)
149s 
149s R is free software and comes with ABSOLUTELY NO WARRANTY.
149s You are welcome to redistribute it under certain conditions.
149s Type 'license()' or 'licence()' for distribution details.
149s 
149s R is a collaborative project with many contributors.
149s Type 'contributors()' for more information and
149s 'citation()' on how to cite R or R packages in publications.
149s 
149s Type 'demo()' for some demos, 'help()' for on-line help, or
149s 'help.start()' for an HTML browser interface to help.
149s Type 'q()' to quit R.
149s 
149s > library('TitanCNA')
161s > 
161s > 
161s There were 12 warnings (use warnings() to see them)
161s Other tests are currently unsupported!
161s They will be progressively added.
161s autopkgtest [22:19:42]: test pkg-r-autopkgtest: -----------------------]
161s pkg-r-autopkgtest    PASS
161s autopkgtest [22:19:42]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
162s autopkgtest [22:19:43]: @@@@@@@@@@@@@@@@@@@@ summary
162s pkg-r-autopkgtest    PASS
172s Creating nova instance adt-noble-ppc64el-r-bioc-titancna-20240317-221701-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240316.img (UUID 5f323cde-6357-475d-9beb-0cc93b49185c)...