0s autopkgtest [21:54:01]: starting date and time: 2024-03-17 21:54:01+0000
  0s autopkgtest [21:54:01]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [21:54:01]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kdh2o8u6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-variantannotation,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-genomicfiles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-1.secgroup --name adt-noble-ppc64el-r-bioc-genomicfiles-20240317-215400-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
109s autopkgtest [21:55:50]: testbed dpkg architecture: ppc64el
110s autopkgtest [21:55:51]: testbed apt version: 2.7.12
110s autopkgtest [21:55:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup
110s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
111s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
111s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [484 kB]
111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3676 kB]
111s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [643 kB]
111s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
111s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
111s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
111s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3974 kB]
112s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
112s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [48.0 kB]
112s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
115s Fetched 9012 kB in 3s (3535 kB/s)
115s Reading package lists...
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s Calculating upgrade...
118s The following packages will be REMOVED:
118s   libssl3
118s The following NEW packages will be installed:
118s   libssl3t64
118s The following packages have been kept back:
118s   curl
118s The following packages will be upgraded:
118s   openssl
119s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded.
119s Need to get 3195 kB of archives.
119s After this operation, 6144 B of additional disk space will be used.
119s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu1 [1028 kB]
119s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu1 [2168 kB]
119s Fetched 3195 kB in 1s (4367 kB/s)
120s (Reading database ... 
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(Reading database ... 70095 files and directories currently installed.)
120s Preparing to unpack .../openssl_3.0.13-0ubuntu1_ppc64el.deb ...
120s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
120s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested:
120s  wget depends on libssl3 (>= 3.0.0).
120s  tnftp depends on libssl3 (>= 3.0.0).
120s  tcpdump depends on libssl3 (>= 3.0.0).
120s  systemd-resolved depends on libssl3 (>= 3.0.0).
120s  systemd depends on libssl3 (>= 3.0.0).
120s  sudo depends on libssl3 (>= 3.0.0).
120s  rsync depends on libssl3 (>= 3.0.0).
120s  python3-cryptography depends on libssl3 (>= 3.0.0).
120s  openssh-server depends on libssl3 (>= 3.0.10).
120s  openssh-client depends on libssl3 (>= 3.0.10).
120s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
120s  libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0).
120s  libssh-4:ppc64el depends on libssl3 (>= 3.0.0).
120s  libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0).
120s  libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0).
120s  libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0).
120s  libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0).
120s  libnvme1 depends on libssl3 (>= 3.0.0).
120s  libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0).
120s  libkmod2:ppc64el depends on libssl3 (>= 3.0.0).
120s  libfido2-1:ppc64el depends on libssl3 (>= 3.0.0).
120s  libcurl4:ppc64el depends on libssl3 (>= 3.0.0).
120s  libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0).
120s  kmod depends on libssl3 (>= 3.0.0).
120s  dhcpcd-base depends on libssl3 (>= 3.0.0).
120s  bind9-libs:ppc64el depends on libssl3 (>= 3.0.0).
120s 
120s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70095 files and directories currently installed.)
120s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ...
120s Selecting previously unselected package libssl3t64:ppc64el.
120s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70084 files and directories currently installed.)
120s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_ppc64el.deb ...
120s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu1) ...
120s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu1) ...
120s Setting up openssl (3.0.13-0ubuntu1) ...
120s Processing triggers for man-db (2.12.0-3) ...
122s Processing triggers for libc-bin (2.39-0ubuntu2) ...
122s Reading package lists...
122s Building dependency tree...
122s Reading state information...
122s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
123s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
123s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
123s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
123s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
124s Reading package lists...
124s Reading package lists...
125s Building dependency tree...
125s Reading state information...
125s Calculating upgrade...
125s The following packages have been kept back:
125s   curl
125s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
125s Reading package lists...
125s Building dependency tree...
125s Reading state information...
125s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
128s autopkgtest [21:56:09]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024
128s autopkgtest [21:56:09]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfiles
130s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (dsc) [2416 B]
130s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (tar) [291 kB]
130s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (diff) [5272 B]
130s gpgv: Signature made Fri Dec  1 10:41:34 2023 UTC
130s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
130s gpgv:                issuer "tillea@rki.de"
130s gpgv: Can't check signature: No public key
130s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.38.0+dfsg-1.dsc: no acceptable signature found
130s autopkgtest [21:56:11]: testing package r-bioc-genomicfiles version 1.38.0+dfsg-1
130s autopkgtest [21:56:11]: build not needed
131s autopkgtest [21:56:12]: test pkg-r-autopkgtest: preparing testbed
133s Reading package lists...
133s Building dependency tree...
133s Reading state information...
133s Starting pkgProblemResolver with broken count: 0
133s Starting 2 pkgProblemResolver with broken count: 0
133s Done
133s The following additional packages will be installed:
133s   build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu
133s   cpp-powerpc64le-linux-gnu curl dctrl-tools fontconfig fontconfig-config
133s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
133s   fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13
133s   g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-13
133s   gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gfortran gfortran-13
133s   gfortran-13-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu
133s   icu-devtools javascript-common libasan8 libatomic1 libbibtex-parser-perl
133s   libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin
133s   libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0
133s   libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1
133s   libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl libisl23
133s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
133s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
133s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
133s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
133s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
133s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
133s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
133s   liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
133s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
133s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
133s   libpng-dev libpotrace0 libpsl5t64 libptexenc1 libquadmath0 libreadline-dev
133s   libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0
133s   libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
133s   libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6
133s   libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev
133s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
133s   pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
133s   r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache
133s   r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle
133s   r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray
133s   r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata
133s   r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicfiles
133s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
133s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
133s   r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray
133s   r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
133s   r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh
133s   r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
133s   r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools
133s   r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
133s   r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate
133s   r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome
133s   r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options
133s   r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools
133s   r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr
133s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
133s   r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime
133s   r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr
133s   r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr
133s   r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr
133s   r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit
133s   r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi
133s   r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr
133s   r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr
133s   r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto
133s   t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries
133s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
133s Suggested packages:
133s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
133s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
133s   gdb-powerpc64le-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
133s   apache2 | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc
133s   libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev
133s   libboost-context1.83-dev libboost-contract1.83-dev
133s   libboost-coroutine1.83-dev libboost-date-time1.83-dev
133s   libboost-exception1.83-dev libboost-fiber1.83-dev
133s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
133s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
133s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
133s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
133s   libboost-numpy1.83-dev libboost-program-options1.83-dev
133s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
133s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
133s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
133s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
133s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
133s   glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix
133s   libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
133s   tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex
133s   pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff
133s   ghc php python ruby libjs-katex citation-style-language-styles elpa-ess
133s   r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic
133s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo
133s   r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat
133s   r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel
133s   r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery
133s   r-cran-webmockr r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats
133s   r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger
133s   r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz
133s   r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma
133s   r-cran-hexbin r-bioc-rhdf5 r-cran-ggplot2 r-cran-roxygen2 r-cran-ff
133s   r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-getopt
133s   r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales
133s   r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer
133s   r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here
133s   r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript
133s   gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview
133s   texlive-latex-base-doc wp2latex
133s Recommended packages:
133s   bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools
133s   r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes
133s   r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui
133s   r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2
133s   r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx
133s   r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio
133s   r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling
133s   r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql
133s   r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-waldo r-cran-cairo
133s   r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf
133s   r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice
133s   r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse
133s   r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis
133s   r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest
133s   r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown
133s   r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl
133s   libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
134s The following packages will be REMOVED:
134s   libcurl4 libpsl5
134s The following NEW packages will be installed:
134s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu
134s   cpp-powerpc64le-linux-gnu dctrl-tools fontconfig fontconfig-config
134s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
134s   fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13
134s   g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-13
134s   gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gfortran gfortran-13
134s   gfortran-13-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu
134s   icu-devtools javascript-common libasan8 libatomic1 libbibtex-parser-perl
134s   libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin
134s   libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0
134s   libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1
134s   libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl libisl23
134s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
134s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
134s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
134s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
134s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
134s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
134s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
134s   liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
134s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
134s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
134s   libpng-dev libpotrace0 libpsl5t64 libptexenc1 libquadmath0 libreadline-dev
134s   libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0
134s   libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
134s   libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6
134s   libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev
134s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
134s   pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
134s   r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache
134s   r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle
134s   r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray
134s   r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata
134s   r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicfiles
134s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
134s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
134s   r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray
134s   r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector
134s   r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh
134s   r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob
134s   r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools
134s   r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
134s   r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate
134s   r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome
134s   r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options
134s   r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools
134s   r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr
134s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
134s   r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime
134s   r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr
134s   r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr
134s   r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr
134s   r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit
134s   r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi
134s   r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr
134s   r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr
134s   r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto
134s   t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries
134s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
134s The following packages will be upgraded:
134s   curl
134s 1 upgraded, 283 newly installed, 2 to remove and 0 not upgraded.
134s Need to get 450 MB/450 MB of archives.
134s After this operation, 1433 MB of additional disk space will be used.
134s Get:1 /tmp/autopkgtest.kBAE58/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [772 B]
134s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1 [59.0 kB]
134s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el curl ppc64el 8.5.0-2ubuntu7 [234 kB]
134s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu7 [428 kB]
134s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu2 [21.3 kB]
134s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el linux-libc-dev ppc64el 6.8.0-11.11 [1585 kB]
134s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB]
134s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1build1 [262 kB]
134s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3 [79.2 kB]
134s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB]
134s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu2 [2102 kB]
134s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3 [864 kB]
134s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1 [61.2 kB]
134s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [10.7 MB]
135s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-17ubuntu2 [1038 B]
135s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B]
135s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB]
135s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240303-1ubuntu1 [48.1 kB]
135s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB]
135s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240303-1ubuntu1 [32.4 kB]
135s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240303-1ubuntu1 [10.7 kB]
135s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240303-1ubuntu1 [2973 kB]
135s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240303-1ubuntu1 [1325 kB]
135s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240303-1ubuntu1 [2734 kB]
135s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240303-1ubuntu1 [1194 kB]
135s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240303-1ubuntu1 [158 kB]
135s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-17ubuntu2 [1581 kB]
135s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [20.6 MB]
136s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-17ubuntu2 [477 kB]
136s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B]
136s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B]
136s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-17ubuntu2 [2445 kB]
136s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [12.2 MB]
136s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-17ubuntu2 [14.5 kB]
136s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B]
136s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B]
136s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B]
136s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el dctrl-tools ppc64el 2.24-3build2 [70.6 kB]
136s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
136s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
137s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB]
137s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB]
137s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1ubuntu1 [192 kB]
137s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
137s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
137s Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-lmodern all 2.005-1 [4799 kB]
137s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
137s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB]
137s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran-13-dev ppc64el 13.2.0-17ubuntu2 [604 kB]
137s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [11.2 MB]
138s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13 ppc64el 13.2.0-17ubuntu2 [10.3 kB]
138s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1030 B]
138s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran ppc64el 4:13.2.0-7ubuntu1 [1170 B]
138s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el icu-devtools ppc64el 74.2-1ubuntu1 [246 kB]
138s Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el javascript-common all 11+nmu1 [5936 B]
138s Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libio-string-perl all 1.08-4 [11.1 kB]
138s Get:57 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblatex-tounicode-perl all 0.54-2 [29.0 kB]
138s Get:58 http://ftpmaster.internal/ubuntu noble/universe ppc64el libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB]
138s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB]
138s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas-dev ppc64el 3.12.0-3 [301 kB]
138s Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost1.83-dev ppc64el 1.83.0-2ubuntu1 [15.3 MB]
138s Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-dev ppc64el 1.83.0.1ubuntu2 [4312 B]
138s Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5ubuntu1 [51.2 kB]
138s Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB]
138s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB]
138s Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B]
138s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB]
138s Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB]
138s Get:69 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3 [25.1 kB]
138s Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
138s Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB]
138s Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB]
138s Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB]
138s Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build2 [49.3 kB]
138s Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu-dev ppc64el 74.2-1ubuntu1 [12.5 MB]
138s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB]
138s Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-2ubuntu1 [357 kB]
138s Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
138s Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B]
138s Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B]
138s Get:81 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
138s Get:82 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
138s Get:83 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
138s Get:84 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-d3 all 3.5.17-4 [132 kB]
138s Get:85 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-es5-shim all 4.6.7-2 [39.8 kB]
138s Get:86 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
138s Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
138s Get:88 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
138s Get:89 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
138s Get:90 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
138s Get:91 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
138s Get:92 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
138s Get:93 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
138s Get:94 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
138s Get:95 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
138s Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libkpathsea6 ppc64el 2023.20230311.66589-9 [71.2 kB]
138s Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB]
138s Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack-dev ppc64el 3.12.0-3 [6100 kB]
138s Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB]
138s Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libncurses-dev ppc64el 6.4+20240113-1ubuntu1 [485 kB]
138s Get:101 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2 [158 kB]
138s Get:102 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2 [21.4 kB]
138s Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.51.0+ds-4 [266 kB]
139s Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.51.0+ds-4 [49.5 kB]
139s Get:105 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.51.0+ds-4 [31.2 kB]
139s Get:106 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29 [13.5 kB]
139s Get:107 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29 [8710 B]
139s Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu1 [245 kB]
139s Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu1 [228 kB]
139s Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-posix3 ppc64el 10.42-4ubuntu1 [7016 B]
139s Get:111 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-dev ppc64el 10.42-4ubuntu1 [794 kB]
139s Get:112 http://ftpmaster.internal/ubuntu noble/main ppc64el libpkgconf3 ppc64el 1.8.1-2 [36.9 kB]
139s Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3ubuntu1 [902 kB]
139s Get:114 http://ftpmaster.internal/ubuntu noble/main ppc64el libpng-dev ppc64el 1.6.43-1 [327 kB]
139s Get:115 http://ftpmaster.internal/ubuntu noble/universe ppc64el libpotrace0 ppc64el 1.16-2 [19.7 kB]
139s Get:116 http://ftpmaster.internal/ubuntu noble/main ppc64el libptexenc1 ppc64el 2023.20230311.66589-9 [42.9 kB]
139s Get:117 http://ftpmaster.internal/ubuntu noble/main ppc64el libreadline-dev ppc64el 8.2-3 [226 kB]
139s Get:118 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB]
139s Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build2 [18.5 kB]
139s Get:120 http://ftpmaster.internal/ubuntu noble/main ppc64el libsynctex2 ppc64el 2023.20230311.66589-9 [68.6 kB]
139s Get:121 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB]
139s Get:122 http://ftpmaster.internal/ubuntu noble/universe ppc64el libteckit0 ppc64el 2.5.12+ds1-1 [399 kB]
139s Get:123 http://ftpmaster.internal/ubuntu noble/main ppc64el libtexlua53-5 ppc64el 2023.20230311.66589-9 [163 kB]
139s Get:124 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB]
139s Get:125 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB]
139s Get:126 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB]
139s Get:127 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB]
139s Get:128 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B]
139s Get:129 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB]
139s Get:130 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6 ppc64el 1:1.2.1-1.1 [198 kB]
139s Get:131 http://ftpmaster.internal/ubuntu noble/main ppc64el libxmu6 ppc64el 2:1.1.3-3 [57.2 kB]
139s Get:132 http://ftpmaster.internal/ubuntu noble/main ppc64el libxpm4 ppc64el 1:3.5.17-1 [48.6 kB]
139s Get:133 http://ftpmaster.internal/ubuntu noble/main ppc64el libxaw7 ppc64el 2:1.0.14-1 [227 kB]
139s Get:134 http://ftpmaster.internal/ubuntu noble/main ppc64el libxi6 ppc64el 2:1.8.1-1 [37.9 kB]
139s Get:135 http://ftpmaster.internal/ubuntu noble/universe ppc64el libzzip-0-13 ppc64el 0.13.72+dfsg.1-1.1 [29.7 kB]
139s Get:136 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-bootstrap-sass all 3.4.3-2 [187 kB]
139s Get:137 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
139s Get:138 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-normalize.css all 8.0.1-5 [10.8 kB]
139s Get:139 http://ftpmaster.internal/ubuntu noble/universe ppc64el pandoc-data all 3.1.3-1 [92.4 kB]
139s Get:140 http://ftpmaster.internal/ubuntu noble/universe ppc64el pandoc ppc64el 3.1.3+ds-2 [22.5 MB]
140s Get:141 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf-bin ppc64el 1.8.1-2 [22.0 kB]
140s Get:142 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf ppc64el 1.8.1-2 [16.7 kB]
140s Get:143 http://ftpmaster.internal/ubuntu noble/main ppc64el pkg-config ppc64el 1.8.1-2 [7170 B]
140s Get:144 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13 [192 kB]
140s Get:145 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu3 [192 kB]
140s Get:146 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
140s Get:147 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-core ppc64el 4.3.2-1build1 [27.4 MB]
141s Get:148 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma-dev ppc64el 5.4.5-0.3 [243 kB]
141s Get:149 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-dev all 4.3.2-1build1 [4336 B]
141s Get:150 http://ftpmaster.internal/ubuntu noble/universe ppc64el pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
141s Get:151 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocgenerics all 0.48.1-2 [595 kB]
141s Get:152 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biobase ppc64el 2.62.0-1 [2138 kB]
141s Get:153 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-s4vectors ppc64el 0.40.2+dfsg-1 [2079 kB]
141s Get:154 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-iranges ppc64el 2.36.0-1 [2263 kB]
141s Get:155 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dbi all 1.2.2-1 [823 kB]
141s Get:156 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bit ppc64el 4.0.5-1 [1089 kB]
141s Get:157 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bit64 ppc64el 4.0.5-1 [479 kB]
141s Get:158 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rlang ppc64el 1.1.3-1 [1696 kB]
141s Get:159 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cli ppc64el 3.6.2-1 [1405 kB]
141s Get:160 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-glue ppc64el 1.7.0-1 [155 kB]
141s Get:161 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
141s Get:162 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-vctrs ppc64el 0.6.5-1 [1399 kB]
141s Get:163 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-blob all 1.2.4-1 [49.8 kB]
141s Get:164 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fastmap ppc64el 1.1.1-1 [72.4 kB]
141s Get:165 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cachem ppc64el 1.0.8-1 [72.2 kB]
141s Get:166 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-memoise all 2.0.1-1 [53.9 kB]
141s Get:167 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
141s Get:168 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-plogr all 0.2.0-3build1 [15.1 kB]
141s Get:169 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cpp11 all 0.4.7-1 [266 kB]
141s Get:170 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rsqlite ppc64el 2.3.4-1 [1777 kB]
141s Get:171 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-curl ppc64el 5.2.0+dfsg-1 [192 kB]
141s Get:172 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-jsonlite ppc64el 1.8.8+dfsg-1 [449 kB]
141s Get:173 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-mime ppc64el 0.12-1 [36.1 kB]
141s Get:174 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-sys ppc64el 3.4.2-1 [44.7 kB]
141s Get:175 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-askpass ppc64el 1.2.0-1 [24.5 kB]
141s Get:176 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-openssl ppc64el 2.1.1+dfsg-2 [405 kB]
141s Get:177 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-r6 all 2.5.1-1 [99.0 kB]
141s Get:178 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-httr all 1.4.7+dfsg-1 [459 kB]
141s Get:179 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-png ppc64el 0.1-8-1 [44.1 kB]
141s Get:180 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
141s Get:181 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-xvector ppc64el 0.42.0-1 [626 kB]
141s Get:182 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bitops ppc64el 1.0-7-1 [30.0 kB]
141s Get:183 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rcurl ppc64el 1.98-1.14+dfsg-1 [796 kB]
141s Get:184 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
141s Get:185 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
142s Get:186 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-crayon all 1.5.2-1 [164 kB]
142s Get:187 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biostrings ppc64el 2.70.2+dfsg-1 [13.7 MB]
142s Get:188 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
142s Get:189 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
142s Get:190 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xml ppc64el 3.99-0.16.1-1 [1744 kB]
142s Get:191 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xtable all 1:1.8-4-2 [689 kB]
142s Get:192 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB]
142s Get:193 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-generics all 0.1.3-1 [81.3 kB]
142s Get:194 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-magrittr ppc64el 2.0.3-1 [154 kB]
142s Get:195 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fansi ppc64el 1.0.5-1 [627 kB]
142s Get:196 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-utf8 ppc64el 1.2.4-1 [148 kB]
142s Get:197 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
142s Get:198 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tibble ppc64el 3.2.1+dfsg-2 [415 kB]
142s Get:199 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-withr all 2.5.0-1 [225 kB]
142s Get:200 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tidyselect ppc64el 1.2.0+dfsg-1 [218 kB]
142s Get:201 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dplyr ppc64el 1.1.4-1 [1516 kB]
142s Get:202 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-purrr ppc64el 1.0.2-1 [503 kB]
142s Get:203 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-stringi ppc64el 1.8.3-1 [919 kB]
142s Get:204 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-stringr all 1.5.1-1 [290 kB]
143s Get:205 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tidyr ppc64el 1.3.1-1 [1163 kB]
143s Get:206 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB]
143s Get:207 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-filelock ppc64el 1.0.3-1 [30.3 kB]
143s Get:208 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB]
143s Get:209 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocio all 1.12.0+dfsg-1 [213 kB]
143s Get:210 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-formatr all 1.14-1 [152 kB]
143s Get:211 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lambda.r all 1.2.4-2build1 [119 kB]
143s Get:212 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
143s Get:213 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
143s Get:214 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-snow all 1:0.4.4-2 [97.6 kB]
143s Get:215 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-codetools all 0.2-19-1 [90.5 kB]
143s Get:216 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bh all 1.84.0-1 [5962 B]
143s Get:217 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocparallel ppc64el 1.36.0-1 [1351 kB]
143s Get:218 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-base64enc ppc64el 0.1-3-3 [28.1 kB]
143s Get:219 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-digest ppc64el 0.6.34-1 [198 kB]
143s Get:220 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-ellipsis ppc64el 0.3.2-2 [35.9 kB]
143s Get:221 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-htmltools ppc64el 0.5.7-1 [369 kB]
143s Get:222 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-evaluate all 0.23-1 [90.2 kB]
143s Get:223 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xfun ppc64el 0.41+dfsg-1 [415 kB]
143s Get:224 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-highr all 0.10+dfsg-1 [38.3 kB]
143s Get:225 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-yaml ppc64el 2.3.8-1 [139 kB]
143s Get:226 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
144s Get:227 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-knitr all 1.45+dfsg-1 [917 kB]
144s Get:228 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
144s Get:229 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fs ppc64el 1.6.3+dfsg-1 [231 kB]
144s Get:230 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rappdirs ppc64el 0.3.3-1 [47.7 kB]
144s Get:231 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-sass ppc64el 0.4.8+dfsg-1 [1026 kB]
144s Get:232 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
144s Get:233 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fontawesome all 0.5.2-1 [1300 kB]
144s Get:234 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tinytex all 0.49-1 [141 kB]
144s Get:235 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
144s Get:236 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-littler ppc64el 0.3.19-1 [95.1 kB]
144s Get:237 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
144s Get:238 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rcpp ppc64el 1.0.12-1 [1989 kB]
144s Get:239 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-later ppc64el 1.3.2+dfsg-1 [127 kB]
144s Get:240 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-promises ppc64el 1.2.1+dfsg-1 [285 kB]
144s Get:241 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-httpuv ppc64el 1.6.14+dfsg-1 [527 kB]
144s Get:242 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-sourcetools ppc64el 0.1.7-1-1 [52.4 kB]
144s Get:243 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-commonmark ppc64el 1.9.1-1 [142 kB]
144s Get:244 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
144s Get:245 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
144s Get:246 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
144s Get:247 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bookdown all 0.37+dfsg-1 [1408 kB]
144s Get:248 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
144s Get:249 http://ftpmaster.internal/ubuntu noble/universe ppc64el tex-common all 6.18 [32.8 kB]
144s Get:250 http://ftpmaster.internal/ubuntu noble/main ppc64el t1utils ppc64el 1.41-4build2 [69.6 kB]
144s Get:251 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-binaries ppc64el 2023.20230311.66589-9 [12.4 MB]
145s Get:252 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-base all 2023.20240207-1 [21.7 MB]
146s Get:253 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-latex-base all 2023.20240207-1 [1238 kB]
146s Get:254 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-bibtex-extra all 2023.20240207-1 [79.1 MB]
149s Get:255 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB]
149s Get:256 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-hms all 1.1.3-1 [96.5 kB]
149s Get:257 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-prettyunits all 1.2.0-1 [162 kB]
149s Get:258 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-progress all 1.2.3-1 [91.9 kB]
149s Get:259 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xml2 ppc64el 1.3.6-1 [328 kB]
149s Get:260 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biomart all 2.58.2+dfsg-1 [433 kB]
149s Get:261 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicranges ppc64el 1.54.1+dfsg-1 [1822 kB]
149s Get:262 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-rhtslib ppc64el 2.4.1+dfsg-1 [1548 kB]
149s Get:263 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-rsamtools ppc64el 2.18.0+dfsg-1 [3801 kB]
149s Get:264 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-matrixstats ppc64el 1.2.0-1 [530 kB]
149s Get:265 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
149s Get:266 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lattice ppc64el 0.22-5-1 [1343 kB]
149s Get:267 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-matrix ppc64el 1.6-5-1 [4057 kB]
149s Get:268 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-abind all 1.4-5-2 [63.6 kB]
149s Get:269 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-s4arrays ppc64el 1.2.0+dfsg-1 [502 kB]
149s Get:270 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-sparsearray ppc64el 1.2.4+dfsg-1 [1222 kB]
149s Get:271 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-delayedarray ppc64el 0.28.0+dfsg-1 [1786 kB]
149s Get:272 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
149s Get:273 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicalignments ppc64el 1.38.2-1 [2139 kB]
149s Get:274 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rjson ppc64el 0.2.21-1 [144 kB]
149s Get:275 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-restfulr ppc64el 0.0.15-1 [380 kB]
149s Get:276 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-rtracklayer ppc64el 1.62.0-1 [5148 kB]
150s Get:277 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-bsgenome all 1.70.2-1 [6975 kB]
150s Get:278 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-survival ppc64el 3.5-8-1 [6160 kB]
150s Get:279 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genefilter ppc64el 1.84.0-1 [1127 kB]
150s Get:280 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB]
150s Get:281 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el r-bioc-variantannotation ppc64el 1.48.1-1build1 [3656 kB]
150s Get:282 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicfiles all 1.38.0+dfsg-1 [532 kB]
150s Get:283 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-snpstats ppc64el 1.52.0+dfsg-1 [7274 kB]
151s Get:284 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-runit all 0.4.32-3 [283 kB]
151s Preconfiguring packages ...
151s Fetched 450 MB in 17s (26.4 MB/s)
151s dpkg: libpsl5:ppc64el: dependency problems, but removing anyway as you requested:
151s  wget depends on libpsl5 (>= 0.16.0).
151s  libcurl4:ppc64el depends on libpsl5 (>= 0.16.0).
151s  libcurl3-gnutls:ppc64el depends on libpsl5 (>= 0.16.0).
151s 
151s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70097 files and directories currently installed.)
151s Removing libpsl5:ppc64el (0.21.2-1build1) ...
151s Selecting previously unselected package libpsl5t64:ppc64el.
151s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70092 files and directories currently installed.)
151s Preparing to unpack .../libpsl5t64_0.21.2-1.1_ppc64el.deb ...
151s Unpacking libpsl5t64:ppc64el (0.21.2-1.1) ...
151s Preparing to unpack .../curl_8.5.0-2ubuntu7_ppc64el.deb ...
151s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
152s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70098 files and directories currently installed.)
152s Removing libcurl4:ppc64el (8.5.0-2ubuntu2) ...
152s Selecting previously unselected package libcurl4t64:ppc64el.
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152s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_ppc64el.deb ...
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152s Selecting previously unselected package libc-dev-bin.
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152s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu.
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154s Selecting previously unselected package libstdc++-13-dev:ppc64el.
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154s Selecting previously unselected package fonts-dejavu-mono.
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155s Selecting previously unselected package libgfortran5:ppc64el.
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156s Selecting previously unselected package libblas3:ppc64el.
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156s Selecting previously unselected package libboost1.83-dev:ppc64el.
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162s Selecting previously unselected package libzzip-0-13:ppc64el.
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162s Selecting previously unselected package node-bootstrap-sass.
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162s Selecting previously unselected package node-html5shiv.
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162s Selecting previously unselected package node-normalize.css.
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162s Selecting previously unselected package pandoc-data.
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163s Selecting previously unselected package pkgconf:ppc64el.
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163s Selecting previously unselected package pkg-config:ppc64el.
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163s Selecting previously unselected package xdg-utils.
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163s Selecting previously unselected package r-base-core.
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164s Selecting previously unselected package liblzma-dev:ppc64el.
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164s Selecting previously unselected package r-bioc-biocgenerics.
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164s Selecting previously unselected package r-cran-dbi.
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164s Selecting previously unselected package r-cran-memoise.
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164s Selecting previously unselected package r-cran-plogr.
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164s Selecting previously unselected package r-cran-cpp11.
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164s Selecting previously unselected package r-cran-rsqlite.
165s Preparing to unpack .../166-r-cran-rsqlite_2.3.4-1_ppc64el.deb ...
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165s Selecting previously unselected package r-cran-curl.
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165s Selecting previously unselected package r-cran-jsonlite.
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165s Selecting previously unselected package r-cran-askpass.
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165s Selecting previously unselected package r-cran-openssl.
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165s Selecting previously unselected package r-cran-r6.
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165s Selecting previously unselected package r-cran-httr.
165s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ...
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165s Selecting previously unselected package r-cran-png.
165s Preparing to unpack .../175-r-cran-png_0.1-8-1_ppc64el.deb ...
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165s Selecting previously unselected package r-bioc-zlibbioc.
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165s Selecting previously unselected package r-bioc-xvector.
165s Preparing to unpack .../177-r-bioc-xvector_0.42.0-1_ppc64el.deb ...
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165s Selecting previously unselected package r-cran-bitops.
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165s Selecting previously unselected package r-cran-rcurl.
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165s Selecting previously unselected package r-bioc-genomeinfodbdata.
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165s Selecting previously unselected package r-cran-crayon.
165s Preparing to unpack .../182-r-cran-crayon_1.5.2-1_all.deb ...
165s Unpacking r-cran-crayon (1.5.2-1) ...
165s Selecting previously unselected package r-bioc-biostrings.
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165s Selecting previously unselected package r-bioc-keggrest.
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165s Selecting previously unselected package r-bioc-annotationdbi.
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165s Selecting previously unselected package r-cran-xml.
165s Preparing to unpack .../186-r-cran-xml_3.99-0.16.1-1_ppc64el.deb ...
165s Unpacking r-cran-xml (3.99-0.16.1-1) ...
165s Selecting previously unselected package r-cran-xtable.
165s Preparing to unpack .../187-r-cran-xtable_1%3a1.8-4-2_all.deb ...
165s Unpacking r-cran-xtable (1:1.8-4-2) ...
166s Selecting previously unselected package r-bioc-annotate.
166s Preparing to unpack .../188-r-bioc-annotate_1.80.0+dfsg-1_all.deb ...
166s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ...
166s Selecting previously unselected package r-cran-generics.
166s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ...
166s Unpacking r-cran-generics (0.1.3-1) ...
166s Selecting previously unselected package r-cran-magrittr.
166s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_ppc64el.deb ...
166s Unpacking r-cran-magrittr (2.0.3-1) ...
166s Selecting previously unselected package r-cran-fansi.
166s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_ppc64el.deb ...
166s Unpacking r-cran-fansi (1.0.5-1) ...
166s Selecting previously unselected package r-cran-utf8.
166s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_ppc64el.deb ...
166s Unpacking r-cran-utf8 (1.2.4-1) ...
166s Selecting previously unselected package r-cran-pillar.
166s Preparing to unpack .../193-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
166s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
166s Selecting previously unselected package r-cran-tibble.
166s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-2_ppc64el.deb ...
166s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
166s Selecting previously unselected package r-cran-withr.
166s Preparing to unpack .../195-r-cran-withr_2.5.0-1_all.deb ...
166s Unpacking r-cran-withr (2.5.0-1) ...
166s Selecting previously unselected package r-cran-tidyselect.
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166s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
166s Selecting previously unselected package r-cran-dplyr.
166s Preparing to unpack .../197-r-cran-dplyr_1.1.4-1_ppc64el.deb ...
166s Unpacking r-cran-dplyr (1.1.4-1) ...
166s Selecting previously unselected package r-cran-purrr.
166s Preparing to unpack .../198-r-cran-purrr_1.0.2-1_ppc64el.deb ...
166s Unpacking r-cran-purrr (1.0.2-1) ...
166s Selecting previously unselected package r-cran-stringi.
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166s Selecting previously unselected package r-cran-stringr.
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166s Selecting previously unselected package r-cran-tidyr.
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166s Selecting previously unselected package r-cran-dbplyr.
166s Preparing to unpack .../202-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ...
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166s Selecting previously unselected package r-cran-filelock.
166s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_ppc64el.deb ...
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166s Selecting previously unselected package r-bioc-biocfilecache.
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166s Selecting previously unselected package r-bioc-biocio.
166s Preparing to unpack .../205-r-bioc-biocio_1.12.0+dfsg-1_all.deb ...
166s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ...
166s Selecting previously unselected package r-cran-formatr.
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166s Unpacking r-cran-formatr (1.14-1) ...
166s Selecting previously unselected package r-cran-lambda.r.
166s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ...
166s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
166s Selecting previously unselected package r-cran-futile.options.
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166s Selecting previously unselected package r-cran-futile.logger.
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166s Selecting previously unselected package r-cran-snow.
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166s Selecting previously unselected package r-cran-codetools.
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166s Selecting previously unselected package r-cran-bh.
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166s Selecting previously unselected package r-bioc-biocparallel.
166s Preparing to unpack .../213-r-bioc-biocparallel_1.36.0-1_ppc64el.deb ...
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166s Selecting previously unselected package r-cran-base64enc.
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166s Selecting previously unselected package r-cran-digest.
166s Preparing to unpack .../215-r-cran-digest_0.6.34-1_ppc64el.deb ...
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166s Selecting previously unselected package r-cran-ellipsis.
166s Preparing to unpack .../216-r-cran-ellipsis_0.3.2-2_ppc64el.deb ...
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166s Selecting previously unselected package r-cran-htmltools.
166s Preparing to unpack .../217-r-cran-htmltools_0.5.7-1_ppc64el.deb ...
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166s Selecting previously unselected package r-cran-evaluate.
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166s Unpacking r-cran-evaluate (0.23-1) ...
167s Selecting previously unselected package r-cran-xfun.
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167s Selecting previously unselected package r-cran-highr.
167s Preparing to unpack .../220-r-cran-highr_0.10+dfsg-1_all.deb ...
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167s Selecting previously unselected package r-cran-yaml.
167s Preparing to unpack .../221-r-cran-yaml_2.3.8-1_ppc64el.deb ...
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167s Selecting previously unselected package libjs-mathjax.
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168s Selecting previously unselected package r-cran-knitr.
168s Preparing to unpack .../223-r-cran-knitr_1.45+dfsg-1_all.deb ...
168s Unpacking r-cran-knitr (1.45+dfsg-1) ...
168s Selecting previously unselected package r-cran-jquerylib.
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168s Selecting previously unselected package r-cran-fs.
168s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_ppc64el.deb ...
168s Unpacking r-cran-fs (1.6.3+dfsg-1) ...
168s Selecting previously unselected package r-cran-rappdirs.
168s Preparing to unpack .../226-r-cran-rappdirs_0.3.3-1_ppc64el.deb ...
168s Unpacking r-cran-rappdirs (0.3.3-1) ...
168s Selecting previously unselected package r-cran-sass.
168s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_ppc64el.deb ...
168s Unpacking r-cran-sass (0.4.8+dfsg-1) ...
168s Selecting previously unselected package r-cran-bslib.
168s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ...
168s Unpacking r-cran-bslib (0.6.1+dfsg-1) ...
168s Selecting previously unselected package r-cran-fontawesome.
168s Preparing to unpack .../229-r-cran-fontawesome_0.5.2-1_all.deb ...
168s Unpacking r-cran-fontawesome (0.5.2-1) ...
168s Selecting previously unselected package r-cran-tinytex.
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168s Selecting previously unselected package libjs-modernizr.
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168s Unpacking libjs-modernizr (2.6.2+ds1-5) ...
168s Selecting previously unselected package r-cran-littler.
168s Preparing to unpack .../232-r-cran-littler_0.3.19-1_ppc64el.deb ...
168s Unpacking r-cran-littler (0.3.19-1) ...
168s Selecting previously unselected package r-cran-pkgkitten.
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168s Unpacking r-cran-pkgkitten (0.2.3-1) ...
168s Selecting previously unselected package r-cran-rcpp.
168s Preparing to unpack .../234-r-cran-rcpp_1.0.12-1_ppc64el.deb ...
168s Unpacking r-cran-rcpp (1.0.12-1) ...
169s Selecting previously unselected package r-cran-later.
169s Preparing to unpack .../235-r-cran-later_1.3.2+dfsg-1_ppc64el.deb ...
169s Unpacking r-cran-later (1.3.2+dfsg-1) ...
169s Selecting previously unselected package r-cran-promises.
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169s Unpacking r-cran-promises (1.2.1+dfsg-1) ...
169s Selecting previously unselected package r-cran-httpuv.
169s Preparing to unpack .../237-r-cran-httpuv_1.6.14+dfsg-1_ppc64el.deb ...
169s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ...
169s Selecting previously unselected package r-cran-sourcetools.
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169s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
169s Selecting previously unselected package r-cran-commonmark.
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169s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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169s Selecting previously unselected package r-cran-shiny.
169s Preparing to unpack .../241-r-cran-shiny_1.8.0+dfsg-1_all.deb ...
169s Unpacking r-cran-shiny (1.8.0+dfsg-1) ...
169s Selecting previously unselected package r-cran-rmarkdown.
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169s Selecting previously unselected package r-cran-bookdown.
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169s Unpacking r-cran-bookdown (0.37+dfsg-1) ...
169s Selecting previously unselected package r-cran-biocmanager.
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169s Selecting previously unselected package tex-common.
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169s Selecting previously unselected package t1utils.
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169s Selecting previously unselected package texlive-binaries.
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170s Selecting previously unselected package texlive-base.
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170s Unpacking texlive-base (2023.20240207-1) ...
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179s Selecting previously unselected package r-bioc-biocstyle.
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179s Selecting previously unselected package r-cran-hms.
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179s Unpacking r-cran-hms (1.1.3-1) ...
179s Selecting previously unselected package r-cran-prettyunits.
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179s Selecting previously unselected package r-cran-progress.
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179s Selecting previously unselected package r-cran-xml2.
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179s Selecting previously unselected package r-bioc-biomart.
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179s Selecting previously unselected package r-bioc-genomicranges.
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179s Selecting previously unselected package r-bioc-rhtslib.
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179s Selecting previously unselected package r-bioc-rsamtools.
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180s Selecting previously unselected package r-cran-matrixstats.
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180s Selecting previously unselected package r-bioc-matrixgenerics.
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180s Selecting previously unselected package r-cran-lattice.
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180s Selecting previously unselected package r-cran-matrix.
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180s Selecting previously unselected package r-bioc-s4arrays.
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181s Setting up libjs-json (0~20221030+~1.0.8-1) ...
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181s 
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182s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
182s Setting up libtirpc-dev:ppc64el (1.3.4+ds-1build1) ...
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182s Setting up liblzma-dev:ppc64el (5.4.5-0.3) ...
182s Setting up libubsan1:ppc64el (14-20240303-1ubuntu1) ...
182s Setting up libpcre2-posix3:ppc64el (10.42-4ubuntu1) ...
182s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ...
182s Setting up libnsl-dev:ppc64el (1.3.0-3) ...
182s Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ...
182s Setting up libasan8:ppc64el (14-20240303-1ubuntu1) ...
182s Setting up fonts-lmodern (2.005-1) ...
182s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ...
182s Setting up libthai-data (0.1.29-2) ...
182s Setting up node-bootstrap-sass (3.4.3-2) ...
182s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ...
182s Setting up libxss1:ppc64el (1:1.2.3-1build2) ...
182s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ...
182s Setting up pandoc-data (3.1.3-1) ...
182s Setting up libtsan2:ppc64el (14-20240303-1ubuntu1) ...
182s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
182s Setting up libisl23:ppc64el (0.26-3) ...
182s Setting up libc-dev-bin (2.39-0ubuntu2) ...
182s Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
182s Setting up node-normalize.css (8.0.1-5) ...
182s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
182s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
182s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
182s Setting up libcc1-0:ppc64el (14-20240303-1ubuntu1) ...
182s Setting up liblsan0:ppc64el (14-20240303-1ubuntu1) ...
182s Setting up libblas-dev:ppc64el (3.12.0-3) ...
182s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode
182s Setting up dctrl-tools (2.24-3build2) ...
182s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
182s Setting up libitm1:ppc64el (14-20240303-1ubuntu1) ...
182s Setting up cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
182s Setting up libsynctex2:ppc64el (2023.20230311.66589-9) ...
182s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ...
182s Setting up libpotrace0:ppc64el (1.16-2) ...
182s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
182s Setting up libice6:ppc64el (2:1.0.10-1build2) ...
182s Setting up liblapack3:ppc64el (3.12.0-3) ...
182s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
182s Setting up cpp-13 (13.2.0-17ubuntu2) ...
182s Setting up libcurl4t64:ppc64el (8.5.0-2ubuntu7) ...
182s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
182s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
182s Setting up libbibtex-parser-perl (1.04+dfsg-1) ...
182s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
182s Setting up pkgconf:ppc64el (1.8.1-2) ...
182s Setting up libthai0:ppc64el (0.1.29-2) ...
182s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
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182s Setting up pandoc (3.1.3+ds-2) ...
182s Setting up liblapack-dev:ppc64el (3.12.0-3) ...
182s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode
182s Setting up pkg-config:ppc64el (1.8.1-2) ...
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182s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
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182s Setting up libc6-dev:ppc64el (2.39-0ubuntu2) ...
182s Setting up curl (8.5.0-2ubuntu7) ...
182s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
182s Setting up libgfortran-13-dev:ppc64el (13.2.0-17ubuntu2) ...
183s Setting up libsm6:ppc64el (2:1.2.3-1build2) ...
183s Setting up libicu-dev:ppc64el (74.2-1ubuntu1) ...
183s Setting up libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ...
183s Setting up libbz2-dev:ppc64el (1.0.8-5ubuntu1) ...
183s Setting up fontconfig (2.15.0-1ubuntu1) ...
185s Regenerating fonts cache... done.
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185s Setting up libxft2:ppc64el (2.3.6-1) ...
185s Setting up libboost1.83-dev:ppc64el (1.83.0-2ubuntu1) ...
185s Setting up libncurses-dev:ppc64el (6.4+20240113-1ubuntu1) ...
185s Setting up libpcre2-dev:ppc64el (10.42-4ubuntu1) ...
185s Setting up libtk8.6:ppc64el (8.6.13-2) ...
185s Setting up libpango-1.0-0:ppc64el (1.51.0+ds-4) ...
185s Setting up libreadline-dev:ppc64el (8.2-3) ...
185s Setting up libcairo2:ppc64el (1.18.0-1) ...
185s Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
185s Setting up gcc-13 (13.2.0-17ubuntu2) ...
185s Setting up libxt6:ppc64el (1:1.2.1-1.1) ...
185s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ...
185s Setting up libboost-dev:ppc64el (1.83.0.1ubuntu2) ...
185s Setting up libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ...
185s Setting up libjpeg8-dev:ppc64el (8c-2ubuntu11) ...
185s Setting up libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ...
185s Setting up libxmu6:ppc64el (2:1.1.3-3) ...
185s Setting up gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
185s Setting up libpng-dev:ppc64el (1.6.43-1) ...
185s Setting up libjpeg-dev:ppc64el (8c-2ubuntu11) ...
185s Setting up libxaw7:ppc64el (2:1.0.14-1) ...
185s Setting up g++-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
185s Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
185s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
185s Setting up r-base-core (4.3.2-1build1) ...
185s 
185s Creating config file /etc/R/Renviron with new version
185s Setting up r-cran-crayon (1.5.2-1) ...
185s Setting up r-cran-sourcetools (0.1.7-1-1) ...
185s Setting up r-cran-futile.options (1.0.1-3build1) ...
185s Setting up r-cran-lattice (0.22-5-1) ...
185s Setting up r-cran-formatr (1.14-1) ...
185s Setting up r-cran-xml (3.99-0.16.1-1) ...
185s Setting up texlive-binaries (2023.20230311.66589-9) ...
185s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
185s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
185s Setting up r-cran-commonmark (1.9.1-1) ...
185s Setting up r-cran-r6 (2.5.1-1) ...
185s Setting up r-cran-pkgkitten (0.2.3-1) ...
185s Setting up texlive-base (2023.20240207-1) ...
186s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
186s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
186s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
186s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
187s Setting up r-cran-magrittr (2.0.3-1) ...
187s Setting up r-cran-rappdirs (0.3.3-1) ...
187s Setting up r-cran-filelock (1.0.3-1) ...
187s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
187s Setting up g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
187s Setting up r-cran-littler (0.3.19-1) ...
187s Setting up r-cran-bh (1.84.0-1) ...
187s Setting up r-cran-fs (1.6.3+dfsg-1) ...
187s Setting up r-cran-rcpp (1.0.12-1) ...
187s Setting up r-cran-curl (5.2.0+dfsg-1) ...
187s Setting up r-cran-codetools (0.2-19-1) ...
187s Setting up g++-13 (13.2.0-17ubuntu2) ...
187s Setting up r-bioc-biocgenerics (0.48.1-2) ...
187s Setting up r-cran-rlang (1.1.3-1) ...
187s Setting up r-cran-matrixstats (1.2.0-1) ...
187s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
187s Setting up r-cran-xfun (0.41+dfsg-1) ...
187s Setting up r-cran-sys (3.4.2-1) ...
187s Setting up r-cran-plogr (0.2.0-3build1) ...
187s Setting up r-cran-withr (2.5.0-1) ...
187s Setting up r-cran-mime (0.12-1) ...
187s Setting up r-cran-generics (0.1.3-1) ...
187s Setting up r-cran-base64enc (0.1-3-3) ...
187s Setting up r-cran-abind (1.4-5-2) ...
187s Setting up r-cran-digest (0.6.34-1) ...
187s Setting up r-cran-yaml (2.3.8-1) ...
187s Setting up r-cran-lambda.r (1.2.4-2build1) ...
187s Setting up r-cran-evaluate (0.23-1) ...
187s Setting up r-cran-dbi (1.2.2-1) ...
187s Setting up r-cran-highr (0.10+dfsg-1) ...
187s Setting up r-cran-prettyunits (1.2.0-1) ...
187s Setting up r-cran-fansi (1.0.5-1) ...
187s Setting up r-cran-snow (1:0.4.4-2) ...
187s Setting up r-cran-glue (1.7.0-1) ...
187s Setting up r-cran-bit (4.0.5-1) ...
187s Setting up r-cran-xtable (1:1.8-4-2) ...
187s Setting up r-cran-cli (3.6.2-1) ...
187s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
187s Setting up r-cran-bitops (1.0-7-1) ...
187s Setting up r-cran-bit64 (4.0.5-1) ...
187s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
187s Setting up gcc (4:13.2.0-7ubuntu1) ...
187s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
187s Setting up r-cran-askpass (1.2.0-1) ...
187s Setting up r-cran-fastmap (1.1.1-1) ...
187s Setting up r-cran-png (0.1-8-1) ...
187s Setting up r-bioc-biobase (2.62.0-1) ...
187s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
187s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
187s Setting up r-cran-utf8 (1.2.4-1) ...
187s Setting up gfortran-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ...
187s Setting up r-cran-stringi (1.8.3-1) ...
187s Setting up texlive-latex-base (2023.20240207-1) ...
187s Setting up r-cran-cpp11 (0.4.7-1) ...
187s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
187s Setting up r-cran-runit (0.4.32-3) ...
187s Setting up r-cran-futile.logger (1.4.3-4build1) ...
187s Setting up r-cran-later (1.3.2+dfsg-1) ...
187s Setting up r-cran-matrix (1.6-5-1) ...
187s Setting up r-cran-tinytex (0.49-1) ...
187s Setting up r-cran-knitr (1.45+dfsg-1) ...
187s Setting up g++ (4:13.2.0-7ubuntu1) ...
187s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
187s Setting up r-cran-cachem (1.0.8-1) ...
187s Setting up build-essential (12.10ubuntu1) ...
187s Setting up r-bioc-iranges (2.36.0-1) ...
187s Setting up r-cran-rjson (0.2.21-1) ...
187s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
187s Setting up r-cran-restfulr (0.0.15-1) ...
187s Setting up r-cran-vctrs (0.6.5-1) ...
187s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
187s Setting up r-cran-ellipsis (0.3.2-2) ...
187s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
187s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
187s Setting up r-cran-stringr (1.5.1-1) ...
187s Setting up r-bioc-biocparallel (1.36.0-1) ...
187s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
187s Setting up r-cran-xml2 (1.3.6-1) ...
187s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
187s Setting up r-cran-survival (3.5-8-1) ...
187s Setting up r-bioc-biocio (1.12.0+dfsg-1) ...
187s Setting up gfortran (4:13.2.0-7ubuntu1) ...
187s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
187s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
187s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
187s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
187s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
187s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ...
187s Setting up texlive-bibtex-extra (2023.20240207-1) ...
187s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
187s Setting up r-cran-httr (1.4.7+dfsg-1) ...
187s Setting up r-cran-hms (1.1.3-1) ...
187s Setting up r-cran-memoise (2.0.1-1) ...
187s Setting up r-cran-promises (1.2.1+dfsg-1) ...
187s Setting up r-cran-purrr (1.0.2-1) ...
187s Setting up r-cran-blob (1.2.4-1) ...
187s Setting up r-cran-htmltools (0.5.7-1) ...
187s Setting up r-bioc-xvector (0.42.0-1) ...
187s Setting up r-cran-sass (0.4.8+dfsg-1) ...
187s Setting up r-cran-dplyr (1.1.4-1) ...
187s Setting up r-cran-rsqlite (2.3.4-1) ...
187s Setting up r-cran-progress (1.2.3-1) ...
187s Setting up r-base-dev (4.3.2-1build1) ...
187s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
187s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
187s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
187s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
187s Setting up r-cran-fontawesome (0.5.2-1) ...
187s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
187s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
187s Setting up r-cran-tidyr (1.3.1-1) ...
187s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
187s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
187s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ...
187s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
187s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
187s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ...
187s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
187s Setting up r-bioc-annotationdbi (1.64.1-1) ...
187s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
187s Setting up r-bioc-annotate (1.80.0+dfsg-1) ...
187s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
187s Setting up r-bioc-biomart (2.58.2+dfsg-1) ...
187s Setting up r-bioc-genefilter (1.84.0-1) ...
187s Setting up r-bioc-genomicalignments (1.38.2-1) ...
187s Setting up r-cran-bookdown (0.37+dfsg-1) ...
187s Setting up r-bioc-rtracklayer (1.62.0-1) ...
187s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
187s Setting up r-bioc-bsgenome (1.70.2-1) ...
187s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ...
187s Setting up r-bioc-variantannotation (1.48.1-1build1) ...
187s Setting up r-bioc-genomicfiles (1.38.0+dfsg-1) ...
187s Setting up autopkgtest-satdep (0) ...
187s Processing triggers for man-db (2.12.0-3) ...
189s Processing triggers for install-info (7.1-3) ...
189s Processing triggers for libc-bin (2.39-0ubuntu2) ...
189s Processing triggers for tex-common (6.18) ...
190s Running updmap-sys. This may take some time... done.
190s Running mktexlsr /var/lib/texmf ... done.
190s Building format(s) --all.
240s 	This may take some time... done.
248s (Reading database ... 119897 files and directories currently installed.)
248s Removing autopkgtest-satdep (0) ...
249s autopkgtest [21:58:10]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
249s autopkgtest [21:58:10]: test pkg-r-autopkgtest: [-----------------------
249s Test: Try to load the R library GenomicFiles
249s 
249s R version 4.3.2 (2023-10-31) -- "Eye Holes"
249s Copyright (C) 2023 The R Foundation for Statistical Computing
249s Platform: powerpc64le-unknown-linux-gnu (64-bit)
249s 
249s R is free software and comes with ABSOLUTELY NO WARRANTY.
249s You are welcome to redistribute it under certain conditions.
249s Type 'license()' or 'licence()' for distribution details.
249s 
249s R is a collaborative project with many contributors.
249s Type 'contributors()' for more information and
249s 'citation()' on how to cite R or R packages in publications.
249s 
249s Type 'demo()' for some demos, 'help()' for on-line help, or
249s 'help.start()' for an HTML browser interface to help.
249s Type 'q()' to quit R.
249s 
249s > library('GenomicFiles')
249s Loading required package: BiocGenerics
250s 
250s Attaching package: ‘BiocGenerics’
250s 
250s The following objects are masked from ‘package:stats’:
250s 
250s     IQR, mad, sd, var, xtabs
250s 
250s The following objects are masked from ‘package:base’:
250s 
250s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
250s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
250s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
250s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
250s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
250s     table, tapply, union, unique, unsplit, which.max, which.min
250s 
250s Loading required package: MatrixGenerics
250s Loading required package: matrixStats
250s 
250s Attaching package: ‘MatrixGenerics’
250s 
250s The following objects are masked from ‘package:matrixStats’:
250s 
250s     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
250s     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
250s     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
250s     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
250s     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
250s     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
250s     colWeightedMeans, colWeightedMedians, colWeightedSds,
250s     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
250s     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
250s     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
250s     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
250s     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
250s     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
250s     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
250s     rowWeightedSds, rowWeightedVars
250s 
250s Loading required package: GenomicRanges
250s Loading required package: stats4
250s Loading required package: S4Vectors
250s 
250s Attaching package: ‘S4Vectors’
250s 
250s The following object is masked from ‘package:utils’:
250s 
250s     findMatches
250s 
250s The following objects are masked from ‘package:base’:
250s 
250s     expand.grid, I, unname
250s 
250s Loading required package: IRanges
251s Loading required package: GenomeInfoDb
252s Loading required package: SummarizedExperiment
252s Loading required package: Biobase
253s Welcome to Bioconductor
253s 
253s     Vignettes contain introductory material; view with
253s     'browseVignettes()'. To cite Bioconductor, see
253s     'citation("Biobase")', and for packages 'citation("pkgname")'.
253s 
253s 
253s Attaching package: ‘Biobase’
253s 
253s The following object is masked from ‘package:MatrixGenerics’:
253s 
253s     rowMedians
253s 
253s The following objects are masked from ‘package:matrixStats’:
253s 
253s     anyMissing, rowMedians
253s 
256s Loading required package: BiocParallel
256s Loading required package: Rsamtools
256s Loading required package: Biostrings
256s Loading required package: XVector
257s 
257s Attaching package: ‘Biostrings’
257s 
257s The following object is masked from ‘package:base’:
257s 
257s     strsplit
257s 
257s Loading required package: rtracklayer
263s > 
263s > 
263s Other tests are currently unsupported!
263s They will be progressively added.
263s autopkgtest [21:58:24]: test pkg-r-autopkgtest: -----------------------]
264s autopkgtest [21:58:25]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
264s pkg-r-autopkgtest    PASS
264s autopkgtest [21:58:25]: @@@@@@@@@@@@@@@@@@@@ summary
264s pkg-r-autopkgtest    PASS
274s Creating nova instance adt-noble-ppc64el-r-bioc-genomicfiles-20240317-215400-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240316.img (UUID 5f323cde-6357-475d-9beb-0cc93b49185c)...