0s autopkgtest [21:38:14]: starting date and time: 2024-03-17 21:38:14+0000 0s autopkgtest [21:38:14]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [21:38:14]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5qpwuzof/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-genomicfiles --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-9.secgroup --name adt-noble-ppc64el-r-bioc-genomicfiles-20240317-213814-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 149s autopkgtest [21:40:43]: testbed dpkg architecture: ppc64el 150s autopkgtest [21:40:44]: testbed apt version: 2.7.12 150s autopkgtest [21:40:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup 150s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 151s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [484 kB] 151s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3676 kB] 151s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 151s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 151s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [643 kB] 151s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 151s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 151s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 151s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3974 kB] 151s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 151s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [48.0 kB] 151s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 155s Fetched 9012 kB in 2s (3876 kB/s) 155s Reading package lists... 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Calculating upgrade... 159s The following packages will be REMOVED: 159s libssl3 159s The following NEW packages will be installed: 159s libssl3t64 159s The following packages have been kept back: 159s curl 159s The following packages will be upgraded: 159s openssl 159s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 159s Need to get 3195 kB of archives. 159s After this operation, 6144 B of additional disk space will be used. 159s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu1 [1028 kB] 160s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu1 [2168 kB] 161s Fetched 3195 kB in 2s (1891 kB/s) 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 161s Preparing to unpack .../openssl_3.0.13-0ubuntu1_ppc64el.deb ... 161s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 161s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 161s wget depends on libssl3 (>= 3.0.0). 161s tnftp depends on libssl3 (>= 3.0.0). 161s tcpdump depends on libssl3 (>= 3.0.0). 161s systemd-resolved depends on libssl3 (>= 3.0.0). 161s systemd depends on libssl3 (>= 3.0.0). 161s sudo depends on libssl3 (>= 3.0.0). 161s rsync depends on libssl3 (>= 3.0.0). 161s python3-cryptography depends on libssl3 (>= 3.0.0). 161s openssh-server depends on libssl3 (>= 3.0.10). 161s openssh-client depends on libssl3 (>= 3.0.10). 161s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 161s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 161s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 161s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 161s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 161s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 161s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 161s libnvme1 depends on libssl3 (>= 3.0.0). 161s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 161s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 161s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 161s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 161s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 161s kmod depends on libssl3 (>= 3.0.0). 161s dhcpcd-base depends on libssl3 (>= 3.0.0). 161s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 161s 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 161s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 161s Selecting previously unselected package libssl3t64:ppc64el. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70084 files and directories currently installed.) 161s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_ppc64el.deb ... 161s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu1) ... 162s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu1) ... 162s Setting up openssl (3.0.13-0ubuntu1) ... 162s Processing triggers for man-db (2.12.0-3) ... 162s Processing triggers for libc-bin (2.39-0ubuntu2) ... 162s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 163s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 163s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 163s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 163s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 165s Reading package lists... 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Calculating upgrade... 165s The following packages have been kept back: 165s curl 165s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 165s Reading package lists... 166s Building dependency tree... 166s Reading state information... 166s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 168s autopkgtest [21:41:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 169s autopkgtest [21:41:03]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-genomicfiles 170s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (dsc) [2416 B] 170s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (tar) [291 kB] 170s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-genomicfiles 1.38.0+dfsg-1 (diff) [5272 B] 171s gpgv: Signature made Fri Dec 1 10:41:34 2023 UTC 171s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 171s gpgv: issuer "tillea@rki.de" 171s gpgv: Can't check signature: No public key 171s dpkg-source: warning: cannot verify inline signature for ./r-bioc-genomicfiles_1.38.0+dfsg-1.dsc: no acceptable signature found 171s autopkgtest [21:41:05]: testing package r-bioc-genomicfiles version 1.38.0+dfsg-1 171s autopkgtest [21:41:05]: build not needed 172s autopkgtest [21:41:06]: test pkg-r-autopkgtest: preparing testbed 173s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 174s The following additional packages will be installed: 174s build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu 174s cpp-powerpc64le-linux-gnu curl dctrl-tools fontconfig fontconfig-config 174s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 174s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 174s g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-13 174s gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gfortran gfortran-13 174s gfortran-13-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu 174s icu-devtools javascript-common libasan8 libatomic1 libbibtex-parser-perl 174s libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 174s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 174s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 174s libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl libisl23 174s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 174s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 174s libjs-highlight.js libjs-jquery libjs-jquery-datatables 174s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 174s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 174s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 174s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 174s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 174s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 174s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 174s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libquadmath0 libreadline-dev 174s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 174s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 174s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 174s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev 174s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 174s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 174s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 174s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 174s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 174s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 174s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicfiles 174s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 174s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 174s r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 174s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 174s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 174s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 174s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 174s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 174s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 174s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 174s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 174s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 174s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 174s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 174s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 174s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 174s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 174s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 174s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 174s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 174s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 174s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 174s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 174s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 174s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 174s Suggested packages: 174s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 174s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 174s gdb-powerpc64le-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 174s apache2 | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 174s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 174s libboost-context1.83-dev libboost-contract1.83-dev 174s libboost-coroutine1.83-dev libboost-date-time1.83-dev 174s libboost-exception1.83-dev libboost-fiber1.83-dev 174s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 174s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 174s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 174s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 174s libboost-numpy1.83-dev libboost-program-options1.83-dev 174s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 174s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 174s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 174s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 174s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 174s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 174s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 174s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 174s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 174s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 174s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 174s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 174s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 174s r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel 174s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 174s r-cran-webmockr r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats 174s r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger 174s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 174s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 174s r-cran-hexbin r-bioc-rhdf5 r-cran-ggplot2 r-cran-roxygen2 r-cran-ff 174s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-getopt 174s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 174s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 174s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 174s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 174s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec hintview 174s texlive-latex-base-doc wp2latex 174s Recommended packages: 174s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 174s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 174s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 174s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 174s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 174s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 174s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 174s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 174s r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-waldo r-cran-cairo 174s r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 174s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 174s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 174s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 174s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 174s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 174s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 174s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 174s The following packages will be REMOVED: 174s libcurl4 libpsl5 174s The following NEW packages will be installed: 174s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu 174s cpp-powerpc64le-linux-gnu dctrl-tools fontconfig fontconfig-config 174s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 174s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 174s g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-13 174s gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gfortran gfortran-13 174s gfortran-13-powerpc64le-linux-gnu gfortran-powerpc64le-linux-gnu 174s icu-devtools javascript-common libasan8 libatomic1 libbibtex-parser-perl 174s libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 174s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 174s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 174s libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl libisl23 174s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 174s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 174s libjs-highlight.js libjs-jquery libjs-jquery-datatables 174s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 174s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 174s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 174s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 174s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 174s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 174s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 174s libpng-dev libpotrace0 libpsl5t64 libptexenc1 libquadmath0 libreadline-dev 174s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 174s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 174s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 174s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev 174s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 174s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 174s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 174s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 174s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 174s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 174s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicfiles 174s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 174s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 174s r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray 174s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 174s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 174s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 174s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 174s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 174s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 174s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 174s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 174s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 174s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 174s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 174s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 174s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 174s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 174s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 174s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 174s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 174s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 174s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 174s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 174s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 174s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 174s The following packages will be upgraded: 174s curl 174s 1 upgraded, 283 newly installed, 2 to remove and 0 not upgraded. 174s Need to get 450 MB/450 MB of archives. 174s After this operation, 1433 MB of additional disk space will be used. 174s Get:1 /tmp/autopkgtest.mC50oX/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [772 B] 174s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1 [59.0 kB] 175s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el curl ppc64el 8.5.0-2ubuntu7 [234 kB] 175s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu7 [428 kB] 175s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu2 [21.3 kB] 175s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el linux-libc-dev ppc64el 6.8.0-11.11 [1585 kB] 176s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB] 176s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1build1 [262 kB] 176s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3 [79.2 kB] 176s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB] 176s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu2 [2102 kB] 176s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3 [864 kB] 176s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1 [61.2 kB] 176s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [10.7 MB] 178s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-17ubuntu2 [1038 B] 178s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B] 178s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB] 178s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240303-1ubuntu1 [48.1 kB] 178s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 178s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240303-1ubuntu1 [32.4 kB] 178s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240303-1ubuntu1 [10.7 kB] 178s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240303-1ubuntu1 [2973 kB] 178s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240303-1ubuntu1 [1325 kB] 178s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240303-1ubuntu1 [2734 kB] 178s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240303-1ubuntu1 [1194 kB] 178s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240303-1ubuntu1 [158 kB] 178s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-17ubuntu2 [1581 kB] 178s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [20.6 MB] 179s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-17ubuntu2 [477 kB] 179s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B] 179s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B] 179s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-17ubuntu2 [2445 kB] 179s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [12.2 MB] 179s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-17ubuntu2 [14.5 kB] 179s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B] 179s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B] 179s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 179s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el dctrl-tools ppc64el 2.24-3build2 [70.6 kB] 179s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 179s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 179s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 179s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 179s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1ubuntu1 [192 kB] 179s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 179s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 179s Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-lmodern all 2.005-1 [4799 kB] 180s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 180s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 180s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran-13-dev ppc64el 13.2.0-17ubuntu2 [604 kB] 180s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [11.2 MB] 180s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13 ppc64el 13.2.0-17ubuntu2 [10.3 kB] 180s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1030 B] 180s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran ppc64el 4:13.2.0-7ubuntu1 [1170 B] 180s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el icu-devtools ppc64el 74.2-1ubuntu1 [246 kB] 180s Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el javascript-common all 11+nmu1 [5936 B] 180s Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libio-string-perl all 1.08-4 [11.1 kB] 180s Get:57 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblatex-tounicode-perl all 0.54-2 [29.0 kB] 180s Get:58 http://ftpmaster.internal/ubuntu noble/universe ppc64el libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 180s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 180s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas-dev ppc64el 3.12.0-3 [301 kB] 180s Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost1.83-dev ppc64el 1.83.0-2ubuntu1 [15.3 MB] 180s Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-dev ppc64el 1.83.0.1ubuntu2 [4312 B] 180s Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5ubuntu1 [51.2 kB] 180s Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB] 180s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] 180s Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] 180s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 180s Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB] 180s Get:69 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3 [25.1 kB] 180s Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 180s Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 180s Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 180s Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 180s Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build2 [49.3 kB] 180s Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu-dev ppc64el 74.2-1ubuntu1 [12.5 MB] 181s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 181s Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8-dev ppc64el 2.1.5-2ubuntu1 [357 kB] 181s Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 181s Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8-dev ppc64el 8c-2ubuntu11 [1484 B] 181s Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-dev ppc64el 8c-2ubuntu11 [1486 B] 181s Get:81 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 181s Get:82 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 181s Get:83 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 181s Get:84 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-d3 all 3.5.17-4 [132 kB] 181s Get:85 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-es5-shim all 4.6.7-2 [39.8 kB] 181s Get:86 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 181s Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 181s Get:88 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 181s Get:89 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 181s Get:90 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 181s Get:91 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 181s Get:92 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 181s Get:93 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 181s Get:94 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 181s Get:95 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 181s Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libkpathsea6 ppc64el 2023.20230311.66589-9 [71.2 kB] 181s Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 181s Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack-dev ppc64el 3.12.0-3 [6100 kB] 181s Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 181s Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libncurses-dev ppc64el 6.4+20240113-1ubuntu1 [485 kB] 181s Get:101 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2 [158 kB] 181s Get:102 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2 [21.4 kB] 181s Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.51.0+ds-4 [266 kB] 182s Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.51.0+ds-4 [49.5 kB] 182s Get:105 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.51.0+ds-4 [31.2 kB] 182s Get:106 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29 [13.5 kB] 182s Get:107 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29 [8710 B] 182s Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu1 [245 kB] 182s Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu1 [228 kB] 182s Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-posix3 ppc64el 10.42-4ubuntu1 [7016 B] 182s Get:111 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-dev ppc64el 10.42-4ubuntu1 [794 kB] 182s Get:112 http://ftpmaster.internal/ubuntu noble/main ppc64el libpkgconf3 ppc64el 1.8.1-2 [36.9 kB] 182s Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3ubuntu1 [902 kB] 182s Get:114 http://ftpmaster.internal/ubuntu noble/main ppc64el libpng-dev ppc64el 1.6.43-1 [327 kB] 182s Get:115 http://ftpmaster.internal/ubuntu noble/universe ppc64el libpotrace0 ppc64el 1.16-2 [19.7 kB] 182s Get:116 http://ftpmaster.internal/ubuntu noble/main ppc64el libptexenc1 ppc64el 2023.20230311.66589-9 [42.9 kB] 182s Get:117 http://ftpmaster.internal/ubuntu noble/main ppc64el libreadline-dev ppc64el 8.2-3 [226 kB] 182s Get:118 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 182s Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build2 [18.5 kB] 182s Get:120 http://ftpmaster.internal/ubuntu noble/main ppc64el libsynctex2 ppc64el 2023.20230311.66589-9 [68.6 kB] 182s Get:121 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB] 182s Get:122 http://ftpmaster.internal/ubuntu noble/universe ppc64el libteckit0 ppc64el 2.5.12+ds1-1 [399 kB] 182s Get:123 http://ftpmaster.internal/ubuntu noble/main ppc64el libtexlua53-5 ppc64el 2023.20230311.66589-9 [163 kB] 183s Get:124 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 183s Get:125 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 183s Get:126 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 183s Get:127 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB] 183s Get:128 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B] 183s Get:129 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB] 183s Get:130 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6 ppc64el 1:1.2.1-1.1 [198 kB] 183s Get:131 http://ftpmaster.internal/ubuntu noble/main ppc64el libxmu6 ppc64el 2:1.1.3-3 [57.2 kB] 183s Get:132 http://ftpmaster.internal/ubuntu noble/main ppc64el libxpm4 ppc64el 1:3.5.17-1 [48.6 kB] 183s Get:133 http://ftpmaster.internal/ubuntu noble/main ppc64el libxaw7 ppc64el 2:1.0.14-1 [227 kB] 183s Get:134 http://ftpmaster.internal/ubuntu noble/main ppc64el libxi6 ppc64el 2:1.8.1-1 [37.9 kB] 183s Get:135 http://ftpmaster.internal/ubuntu noble/universe ppc64el libzzip-0-13 ppc64el 0.13.72+dfsg.1-1.1 [29.7 kB] 183s Get:136 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-bootstrap-sass all 3.4.3-2 [187 kB] 183s Get:137 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 183s Get:138 http://ftpmaster.internal/ubuntu noble/universe ppc64el node-normalize.css all 8.0.1-5 [10.8 kB] 183s Get:139 http://ftpmaster.internal/ubuntu noble/universe ppc64el pandoc-data all 3.1.3-1 [92.4 kB] 183s Get:140 http://ftpmaster.internal/ubuntu noble/universe ppc64el pandoc ppc64el 3.1.3+ds-2 [22.5 MB] 186s Get:141 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf-bin ppc64el 1.8.1-2 [22.0 kB] 186s Get:142 http://ftpmaster.internal/ubuntu noble/main ppc64el pkgconf ppc64el 1.8.1-2 [16.7 kB] 186s Get:143 http://ftpmaster.internal/ubuntu noble/main ppc64el pkg-config ppc64el 1.8.1-2 [7170 B] 186s Get:144 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13 [192 kB] 186s Get:145 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu3 [192 kB] 186s Get:146 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 186s Get:147 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-core ppc64el 4.3.2-1build1 [27.4 MB] 190s Get:148 http://ftpmaster.internal/ubuntu noble/main ppc64el liblzma-dev ppc64el 5.4.5-0.3 [243 kB] 190s Get:149 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-dev all 4.3.2-1build1 [4336 B] 190s Get:150 http://ftpmaster.internal/ubuntu noble/universe ppc64el pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 190s Get:151 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocgenerics all 0.48.1-2 [595 kB] 190s Get:152 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biobase ppc64el 2.62.0-1 [2138 kB] 191s Get:153 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-s4vectors ppc64el 0.40.2+dfsg-1 [2079 kB] 191s Get:154 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-iranges ppc64el 2.36.0-1 [2263 kB] 191s Get:155 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dbi all 1.2.2-1 [823 kB] 191s Get:156 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bit ppc64el 4.0.5-1 [1089 kB] 191s Get:157 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bit64 ppc64el 4.0.5-1 [479 kB] 192s Get:158 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rlang ppc64el 1.1.3-1 [1696 kB] 192s Get:159 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cli ppc64el 3.6.2-1 [1405 kB] 192s Get:160 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-glue ppc64el 1.7.0-1 [155 kB] 192s Get:161 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 192s Get:162 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-vctrs ppc64el 0.6.5-1 [1399 kB] 192s Get:163 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-blob all 1.2.4-1 [49.8 kB] 192s Get:164 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fastmap ppc64el 1.1.1-1 [72.4 kB] 192s Get:165 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cachem ppc64el 1.0.8-1 [72.2 kB] 192s Get:166 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-memoise all 2.0.1-1 [53.9 kB] 192s Get:167 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 192s Get:168 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-plogr all 0.2.0-3build1 [15.1 kB] 192s Get:169 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-cpp11 all 0.4.7-1 [266 kB] 192s Get:170 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rsqlite ppc64el 2.3.4-1 [1777 kB] 193s Get:171 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-curl ppc64el 5.2.0+dfsg-1 [192 kB] 193s Get:172 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-jsonlite ppc64el 1.8.8+dfsg-1 [449 kB] 193s Get:173 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-mime ppc64el 0.12-1 [36.1 kB] 193s Get:174 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-sys ppc64el 3.4.2-1 [44.7 kB] 193s Get:175 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-askpass ppc64el 1.2.0-1 [24.5 kB] 193s Get:176 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-openssl ppc64el 2.1.1+dfsg-2 [405 kB] 193s Get:177 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-r6 all 2.5.1-1 [99.0 kB] 193s Get:178 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-httr all 1.4.7+dfsg-1 [459 kB] 193s Get:179 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-png ppc64el 0.1-8-1 [44.1 kB] 193s Get:180 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 193s Get:181 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-xvector ppc64el 0.42.0-1 [626 kB] 193s Get:182 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bitops ppc64el 1.0-7-1 [30.0 kB] 193s Get:183 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rcurl ppc64el 1.98-1.14+dfsg-1 [796 kB] 193s Get:184 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 195s Get:185 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 195s Get:186 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-crayon all 1.5.2-1 [164 kB] 196s Get:187 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biostrings ppc64el 2.70.2+dfsg-1 [13.7 MB] 198s Get:188 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 198s Get:189 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 198s Get:190 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xml ppc64el 3.99-0.16.1-1 [1744 kB] 198s Get:191 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xtable all 1:1.8-4-2 [689 kB] 199s Get:192 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 199s Get:193 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-generics all 0.1.3-1 [81.3 kB] 199s Get:194 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-magrittr ppc64el 2.0.3-1 [154 kB] 199s Get:195 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fansi ppc64el 1.0.5-1 [627 kB] 199s Get:196 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-utf8 ppc64el 1.2.4-1 [148 kB] 199s Get:197 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 199s Get:198 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tibble ppc64el 3.2.1+dfsg-2 [415 kB] 199s Get:199 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-withr all 2.5.0-1 [225 kB] 199s Get:200 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tidyselect ppc64el 1.2.0+dfsg-1 [218 kB] 199s Get:201 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dplyr ppc64el 1.1.4-1 [1516 kB] 199s Get:202 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-purrr ppc64el 1.0.2-1 [503 kB] 199s Get:203 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-stringi ppc64el 1.8.3-1 [919 kB] 200s Get:204 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-stringr all 1.5.1-1 [290 kB] 200s Get:205 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tidyr ppc64el 1.3.1-1 [1163 kB] 200s Get:206 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 200s Get:207 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-filelock ppc64el 1.0.3-1 [30.3 kB] 200s Get:208 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 200s Get:209 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 200s Get:210 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-formatr all 1.14-1 [152 kB] 200s Get:211 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lambda.r all 1.2.4-2build1 [119 kB] 200s Get:212 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 200s Get:213 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 200s Get:214 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-snow all 1:0.4.4-2 [97.6 kB] 200s Get:215 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-codetools all 0.2-19-1 [90.5 kB] 200s Get:216 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bh all 1.84.0-1 [5962 B] 200s Get:217 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocparallel ppc64el 1.36.0-1 [1351 kB] 201s Get:218 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-base64enc ppc64el 0.1-3-3 [28.1 kB] 201s Get:219 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-digest ppc64el 0.6.34-1 [198 kB] 201s Get:220 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-ellipsis ppc64el 0.3.2-2 [35.9 kB] 201s Get:221 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-htmltools ppc64el 0.5.7-1 [369 kB] 201s Get:222 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-evaluate all 0.23-1 [90.2 kB] 201s Get:223 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xfun ppc64el 0.41+dfsg-1 [415 kB] 201s Get:224 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-highr all 0.10+dfsg-1 [38.3 kB] 201s Get:225 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-yaml ppc64el 2.3.8-1 [139 kB] 201s Get:226 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 201s Get:227 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-knitr all 1.45+dfsg-1 [917 kB] 201s Get:228 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 201s Get:229 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fs ppc64el 1.6.3+dfsg-1 [231 kB] 201s Get:230 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rappdirs ppc64el 0.3.3-1 [47.7 kB] 201s Get:231 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-sass ppc64el 0.4.8+dfsg-1 [1026 kB] 201s Get:232 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 202s Get:233 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-fontawesome all 0.5.2-1 [1300 kB] 202s Get:234 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-tinytex all 0.49-1 [141 kB] 202s Get:235 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 202s Get:236 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-littler ppc64el 0.3.19-1 [95.1 kB] 202s Get:237 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 202s Get:238 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rcpp ppc64el 1.0.12-1 [1989 kB] 202s Get:239 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-later ppc64el 1.3.2+dfsg-1 [127 kB] 202s Get:240 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-promises ppc64el 1.2.1+dfsg-1 [285 kB] 202s Get:241 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-httpuv ppc64el 1.6.14+dfsg-1 [527 kB] 202s Get:242 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-sourcetools ppc64el 0.1.7-1-1 [52.4 kB] 202s Get:243 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-commonmark ppc64el 1.9.1-1 [142 kB] 202s Get:244 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 202s Get:245 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 202s Get:246 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 202s Get:247 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 202s Get:248 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 202s Get:249 http://ftpmaster.internal/ubuntu noble/universe ppc64el tex-common all 6.18 [32.8 kB] 202s Get:250 http://ftpmaster.internal/ubuntu noble/main ppc64el t1utils ppc64el 1.41-4build2 [69.6 kB] 202s Get:251 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-binaries ppc64el 2023.20230311.66589-9 [12.4 MB] 203s Get:252 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-base all 2023.20240207-1 [21.7 MB] 205s Get:253 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-latex-base all 2023.20240207-1 [1238 kB] 205s Get:254 http://ftpmaster.internal/ubuntu noble/universe ppc64el texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 210s Get:255 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 210s Get:256 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-hms all 1.1.3-1 [96.5 kB] 210s Get:257 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-prettyunits all 1.2.0-1 [162 kB] 210s Get:258 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-progress all 1.2.3-1 [91.9 kB] 210s Get:259 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-xml2 ppc64el 1.3.6-1 [328 kB] 210s Get:260 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 210s Get:261 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicranges ppc64el 1.54.1+dfsg-1 [1822 kB] 210s Get:262 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-rhtslib ppc64el 2.4.1+dfsg-1 [1548 kB] 211s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el r-bioc-rsamtools ppc64el 2.18.0+dfsg-1build1 [3815 kB] 211s Get:264 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-matrixstats ppc64el 1.2.0-1 [530 kB] 211s Get:265 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 211s Get:266 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lattice ppc64el 0.22-5-1 [1343 kB] 211s Get:267 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-matrix ppc64el 1.6-5-1 [4057 kB] 211s Get:268 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-abind all 1.4-5-2 [63.6 kB] 211s Get:269 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-s4arrays ppc64el 1.2.0+dfsg-1 [502 kB] 211s Get:270 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-sparsearray ppc64el 1.2.4+dfsg-1 [1222 kB] 211s Get:271 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-delayedarray ppc64el 0.28.0+dfsg-1 [1786 kB] 211s Get:272 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 212s Get:273 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicalignments ppc64el 1.38.2-1 [2139 kB] 212s Get:274 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rjson ppc64el 0.2.21-1 [144 kB] 212s Get:275 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-restfulr ppc64el 0.0.15-1 [380 kB] 212s Get:276 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-rtracklayer ppc64el 1.62.0-1 [5148 kB] 212s Get:277 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-bsgenome all 1.70.2-1 [6975 kB] 213s Get:278 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-survival ppc64el 3.5-8-1 [6160 kB] 213s Get:279 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genefilter ppc64el 1.84.0-1 [1127 kB] 213s Get:280 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 213s Get:281 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-variantannotation ppc64el 1.48.1-1 [3649 kB] 213s Get:282 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-genomicfiles all 1.38.0+dfsg-1 [532 kB] 213s Get:283 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-bioc-snpstats ppc64el 1.52.0+dfsg-1 [7274 kB] 214s Get:284 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-runit all 0.4.32-3 [283 kB] 215s Preconfiguring packages ... 215s Fetched 450 MB in 40s (11.4 MB/s) 215s dpkg: libpsl5:ppc64el: dependency problems, but removing anyway as you requested: 215s wget depends on libpsl5 (>= 0.16.0). 215s libcurl4:ppc64el depends on libpsl5 (>= 0.16.0). 215s libcurl3-gnutls:ppc64el depends on libpsl5 (>= 0.16.0). 215s 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70097 files and directories currently installed.) 215s Removing libpsl5:ppc64el (0.21.2-1build1) ... 215s Selecting previously unselected package libpsl5t64:ppc64el. 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70092 files and directories currently installed.) 215s Preparing to unpack .../libpsl5t64_0.21.2-1.1_ppc64el.deb ... 215s Unpacking libpsl5t64:ppc64el (0.21.2-1.1) ... 215s Preparing to unpack .../curl_8.5.0-2ubuntu7_ppc64el.deb ... 215s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70098 files and directories currently installed.) 215s Removing libcurl4:ppc64el (8.5.0-2ubuntu2) ... 215s Selecting previously unselected package libcurl4t64:ppc64el. 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70093 files and directories currently installed.) 215s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_ppc64el.deb ... 215s Unpacking libcurl4t64:ppc64el (8.5.0-2ubuntu7) ... 215s Selecting previously unselected package libc-dev-bin. 215s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_ppc64el.deb ... 215s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 215s Selecting previously unselected package linux-libc-dev:ppc64el. 215s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_ppc64el.deb ... 215s Unpacking linux-libc-dev:ppc64el (6.8.0-11.11) ... 215s Selecting previously unselected package libcrypt-dev:ppc64el. 215s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ... 215s Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) ... 215s Selecting previously unselected package libtirpc-dev:ppc64el. 215s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_ppc64el.deb ... 215s Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1build1) ... 215s Selecting previously unselected package libnsl-dev:ppc64el. 215s Preparing to unpack .../005-libnsl-dev_1.3.0-3_ppc64el.deb ... 215s Unpacking libnsl-dev:ppc64el (1.3.0-3) ... 215s Selecting previously unselected package rpcsvc-proto. 215s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ... 215s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 215s Selecting previously unselected package libc6-dev:ppc64el. 215s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_ppc64el.deb ... 215s Unpacking libc6-dev:ppc64el (2.39-0ubuntu2) ... 215s Selecting previously unselected package libisl23:ppc64el. 215s Preparing to unpack .../008-libisl23_0.26-3_ppc64el.deb ... 215s Unpacking libisl23:ppc64el (0.26-3) ... 215s Selecting previously unselected package libmpc3:ppc64el. 215s Preparing to unpack .../009-libmpc3_1.3.1-1_ppc64el.deb ... 215s Unpacking libmpc3:ppc64el (1.3.1-1) ... 215s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu. 215s Preparing to unpack .../010-cpp-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 215s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 216s Selecting previously unselected package cpp-13. 216s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_ppc64el.deb ... 216s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 216s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 216s Preparing to unpack .../012-cpp-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 216s Unpacking cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 216s Selecting previously unselected package cpp. 216s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 216s Unpacking cpp (4:13.2.0-7ubuntu1) ... 216s Selecting previously unselected package libcc1-0:ppc64el. 216s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_ppc64el.deb ... 216s Unpacking libcc1-0:ppc64el (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package libgomp1:ppc64el. 216s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 216s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package libitm1:ppc64el. 216s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_ppc64el.deb ... 216s Unpacking libitm1:ppc64el (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package libatomic1:ppc64el. 216s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_ppc64el.deb ... 216s Unpacking libatomic1:ppc64el (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package libasan8:ppc64el. 216s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_ppc64el.deb ... 216s Unpacking libasan8:ppc64el (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package liblsan0:ppc64el. 216s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_ppc64el.deb ... 216s Unpacking liblsan0:ppc64el (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package libtsan2:ppc64el. 216s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_ppc64el.deb ... 216s Unpacking libtsan2:ppc64el (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package libubsan1:ppc64el. 216s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_ppc64el.deb ... 216s Unpacking libubsan1:ppc64el (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package libquadmath0:ppc64el. 216s Preparing to unpack .../022-libquadmath0_14-20240303-1ubuntu1_ppc64el.deb ... 216s Unpacking libquadmath0:ppc64el (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package libgcc-13-dev:ppc64el. 216s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 216s Unpacking libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ... 216s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu. 216s Preparing to unpack .../024-gcc-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 216s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package gcc-13. 217s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_ppc64el.deb ... 217s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 217s Preparing to unpack .../026-gcc-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 217s Unpacking gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package gcc. 217s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 217s Unpacking gcc (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package libstdc++-13-dev:ppc64el. 217s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 217s Unpacking libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package g++-13-powerpc64le-linux-gnu. 217s Preparing to unpack .../029-g++-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 217s Unpacking g++-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package g++-13. 217s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_ppc64el.deb ... 217s Unpacking g++-13 (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package g++-powerpc64le-linux-gnu. 217s Preparing to unpack .../031-g++-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 217s Unpacking g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package g++. 217s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 217s Unpacking g++ (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package build-essential. 217s Preparing to unpack .../033-build-essential_12.10ubuntu1_ppc64el.deb ... 217s Unpacking build-essential (12.10ubuntu1) ... 217s Selecting previously unselected package dctrl-tools. 217s Preparing to unpack .../034-dctrl-tools_2.24-3build2_ppc64el.deb ... 217s Unpacking dctrl-tools (2.24-3build2) ... 217s Selecting previously unselected package fonts-dejavu-mono. 217s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 217s Unpacking fonts-dejavu-mono (2.37-8) ... 217s Selecting previously unselected package fonts-dejavu-core. 217s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 217s Unpacking fonts-dejavu-core (2.37-8) ... 217s Selecting previously unselected package fontconfig-config. 217s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 218s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 218s Selecting previously unselected package libfontconfig1:ppc64el. 218s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 218s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 218s Selecting previously unselected package fontconfig. 218s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_ppc64el.deb ... 218s Unpacking fontconfig (2.15.0-1ubuntu1) ... 218s Selecting previously unselected package fonts-font-awesome. 218s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 218s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 218s Selecting previously unselected package fonts-glyphicons-halflings. 218s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 218s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 218s Selecting previously unselected package fonts-lmodern. 218s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 218s Unpacking fonts-lmodern (2.005-1) ... 218s Selecting previously unselected package fonts-mathjax. 218s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 218s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 218s Selecting previously unselected package libgfortran5:ppc64el. 218s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 218s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 218s Selecting previously unselected package libgfortran-13-dev:ppc64el. 218s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 218s Unpacking libgfortran-13-dev:ppc64el (13.2.0-17ubuntu2) ... 218s Selecting previously unselected package gfortran-13-powerpc64le-linux-gnu. 218s Preparing to unpack .../046-gfortran-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 218s Unpacking gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 218s Selecting previously unselected package gfortran-13. 218s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_ppc64el.deb ... 218s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 218s Selecting previously unselected package gfortran-powerpc64le-linux-gnu. 218s Preparing to unpack .../048-gfortran-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 218s Unpacking gfortran-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 218s Selecting previously unselected package gfortran. 219s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 219s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 219s Selecting previously unselected package icu-devtools. 219s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_ppc64el.deb ... 219s Unpacking icu-devtools (74.2-1ubuntu1) ... 219s Selecting previously unselected package javascript-common. 219s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 219s Unpacking javascript-common (11+nmu1) ... 219s Selecting previously unselected package libio-string-perl. 219s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 219s Unpacking libio-string-perl (1.08-4) ... 219s Selecting previously unselected package liblatex-tounicode-perl. 219s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 219s Unpacking liblatex-tounicode-perl (0.54-2) ... 219s Selecting previously unselected package libbibtex-parser-perl. 219s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 219s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 219s Selecting previously unselected package libblas3:ppc64el. 219s Preparing to unpack .../055-libblas3_3.12.0-3_ppc64el.deb ... 219s Unpacking libblas3:ppc64el (3.12.0-3) ... 219s Selecting previously unselected package libblas-dev:ppc64el. 219s Preparing to unpack .../056-libblas-dev_3.12.0-3_ppc64el.deb ... 219s Unpacking libblas-dev:ppc64el (3.12.0-3) ... 219s Selecting previously unselected package libboost1.83-dev:ppc64el. 219s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_ppc64el.deb ... 219s Unpacking libboost1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 222s Selecting previously unselected package libboost-dev:ppc64el. 222s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_ppc64el.deb ... 222s Unpacking libboost-dev:ppc64el (1.83.0.1ubuntu2) ... 222s Selecting previously unselected package libbz2-dev:ppc64el. 222s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_ppc64el.deb ... 222s Unpacking libbz2-dev:ppc64el (1.0.8-5ubuntu1) ... 222s Selecting previously unselected package libpixman-1-0:ppc64el. 222s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_ppc64el.deb ... 222s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ... 222s Selecting previously unselected package libxcb-render0:ppc64el. 222s Preparing to unpack .../061-libxcb-render0_1.15-1_ppc64el.deb ... 222s Unpacking libxcb-render0:ppc64el (1.15-1) ... 222s Selecting previously unselected package libxcb-shm0:ppc64el. 222s Preparing to unpack .../062-libxcb-shm0_1.15-1_ppc64el.deb ... 222s Unpacking libxcb-shm0:ppc64el (1.15-1) ... 222s Selecting previously unselected package libxrender1:ppc64el. 222s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 222s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 222s Selecting previously unselected package libcairo2:ppc64el. 222s Preparing to unpack .../064-libcairo2_1.18.0-1_ppc64el.deb ... 222s Unpacking libcairo2:ppc64el (1.18.0-1) ... 222s Selecting previously unselected package libdatrie1:ppc64el. 222s Preparing to unpack .../065-libdatrie1_0.2.13-3_ppc64el.deb ... 222s Unpacking libdatrie1:ppc64el (0.2.13-3) ... 222s Selecting previously unselected package libdeflate0:ppc64el. 222s Preparing to unpack .../066-libdeflate0_1.19-1_ppc64el.deb ... 222s Unpacking libdeflate0:ppc64el (1.19-1) ... 222s Selecting previously unselected package libgraphite2-3:ppc64el. 222s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_ppc64el.deb ... 222s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 222s Selecting previously unselected package libharfbuzz0b:ppc64el. 222s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 222s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 222s Selecting previously unselected package x11-common. 222s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 222s Unpacking x11-common (1:7.7+23ubuntu2) ... 222s Selecting previously unselected package libice6:ppc64el. 222s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_ppc64el.deb ... 222s Unpacking libice6:ppc64el (2:1.0.10-1build2) ... 222s Selecting previously unselected package libicu-dev:ppc64el. 222s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_ppc64el.deb ... 222s Unpacking libicu-dev:ppc64el (74.2-1ubuntu1) ... 223s Selecting previously unselected package libjpeg-turbo8:ppc64el. 223s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 223s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 223s Selecting previously unselected package libjpeg-turbo8-dev:ppc64el. 223s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_ppc64el.deb ... 223s Unpacking libjpeg-turbo8-dev:ppc64el (2.1.5-2ubuntu1) ... 223s Selecting previously unselected package libjpeg8:ppc64el. 223s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 223s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 223s Selecting previously unselected package libjpeg8-dev:ppc64el. 223s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_ppc64el.deb ... 223s Unpacking libjpeg8-dev:ppc64el (8c-2ubuntu11) ... 223s Selecting previously unselected package libjpeg-dev:ppc64el. 223s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_ppc64el.deb ... 223s Unpacking libjpeg-dev:ppc64el (8c-2ubuntu11) ... 223s Selecting previously unselected package libjs-bootstrap. 223s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 223s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 223s Selecting previously unselected package libjs-popper.js. 223s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 223s Unpacking libjs-popper.js (1.16.1+ds-6) ... 223s Selecting previously unselected package libjs-bootstrap4. 223s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 223s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 223s Selecting previously unselected package libjs-d3. 223s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 223s Unpacking libjs-d3 (3.5.17-4) ... 223s Selecting previously unselected package libjs-es5-shim. 223s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 223s Unpacking libjs-es5-shim (4.6.7-2) ... 223s Selecting previously unselected package libjs-highlight.js. 223s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 223s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 223s Selecting previously unselected package libjs-jquery. 223s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 223s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 223s Selecting previously unselected package libjs-jquery-datatables. 223s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 223s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 223s Selecting previously unselected package libjs-sifter.js. 223s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 223s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 223s Selecting previously unselected package libjs-microplugin.js. 223s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 223s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 223s Selecting previously unselected package libjs-jquery-selectize.js. 223s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 223s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 223s Selecting previously unselected package libjs-jquery-ui. 223s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 223s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 223s Selecting previously unselected package libjs-json. 223s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 223s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 223s Selecting previously unselected package libjs-lunr. 223s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 223s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 223s Selecting previously unselected package libjs-prettify. 223s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 223s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 223s Selecting previously unselected package libkpathsea6:ppc64el. 223s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_ppc64el.deb ... 223s Unpacking libkpathsea6:ppc64el (2023.20230311.66589-9) ... 223s Selecting previously unselected package liblapack3:ppc64el. 223s Preparing to unpack .../093-liblapack3_3.12.0-3_ppc64el.deb ... 223s Unpacking liblapack3:ppc64el (3.12.0-3) ... 223s Selecting previously unselected package liblapack-dev:ppc64el. 223s Preparing to unpack .../094-liblapack-dev_3.12.0-3_ppc64el.deb ... 223s Unpacking liblapack-dev:ppc64el (3.12.0-3) ... 224s Selecting previously unselected package liblerc4:ppc64el. 224s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 224s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 224s Selecting previously unselected package libncurses-dev:ppc64el. 224s Preparing to unpack .../096-libncurses-dev_6.4+20240113-1ubuntu1_ppc64el.deb ... 224s Unpacking libncurses-dev:ppc64el (6.4+20240113-1ubuntu1) ... 224s Selecting previously unselected package libthai-data. 224s Preparing to unpack .../097-libthai-data_0.1.29-2_all.deb ... 224s Unpacking libthai-data (0.1.29-2) ... 224s Selecting previously unselected package libthai0:ppc64el. 224s Preparing to unpack .../098-libthai0_0.1.29-2_ppc64el.deb ... 224s Unpacking libthai0:ppc64el (0.1.29-2) ... 224s Selecting previously unselected package libpango-1.0-0:ppc64el. 224s Preparing to unpack .../099-libpango-1.0-0_1.51.0+ds-4_ppc64el.deb ... 224s Unpacking libpango-1.0-0:ppc64el (1.51.0+ds-4) ... 224s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 224s Preparing to unpack .../100-libpangoft2-1.0-0_1.51.0+ds-4_ppc64el.deb ... 224s Unpacking libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ... 224s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 224s Preparing to unpack .../101-libpangocairo-1.0-0_1.51.0+ds-4_ppc64el.deb ... 224s Unpacking libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ... 224s Selecting previously unselected package libpaper1:ppc64el. 224s Preparing to unpack .../102-libpaper1_1.1.29_ppc64el.deb ... 224s Unpacking libpaper1:ppc64el (1.1.29) ... 224s Selecting previously unselected package libpaper-utils. 224s Preparing to unpack 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.../108-libpkgconf3_1.8.1-2_ppc64el.deb ... 224s Unpacking libpkgconf3:ppc64el (1.8.1-2) ... 224s Selecting previously unselected package zlib1g-dev:ppc64el. 224s Preparing to unpack .../109-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_ppc64el.deb ... 224s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ... 224s Selecting previously unselected package libpng-dev:ppc64el. 224s Preparing to unpack .../110-libpng-dev_1.6.43-1_ppc64el.deb ... 224s Unpacking libpng-dev:ppc64el (1.6.43-1) ... 224s Selecting previously unselected package libpotrace0:ppc64el. 224s Preparing to unpack .../111-libpotrace0_1.16-2_ppc64el.deb ... 224s Unpacking libpotrace0:ppc64el (1.16-2) ... 224s Selecting previously unselected package libptexenc1:ppc64el. 224s Preparing to unpack .../112-libptexenc1_2023.20230311.66589-9_ppc64el.deb ... 224s Unpacking libptexenc1:ppc64el (2023.20230311.66589-9) ... 224s Selecting previously unselected package libreadline-dev:ppc64el. 224s Preparing to unpack .../113-libreadline-dev_8.2-3_ppc64el.deb ... 224s Unpacking libreadline-dev:ppc64el (8.2-3) ... 224s Selecting previously unselected package libsharpyuv0:ppc64el. 224s Preparing to unpack .../114-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 224s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 224s Selecting previously unselected package libsm6:ppc64el. 224s Preparing to unpack .../115-libsm6_2%3a1.2.3-1build2_ppc64el.deb ... 224s Unpacking libsm6:ppc64el (2:1.2.3-1build2) ... 224s Selecting previously unselected package libsynctex2:ppc64el. 224s Preparing to unpack .../116-libsynctex2_2023.20230311.66589-9_ppc64el.deb ... 224s Unpacking libsynctex2:ppc64el (2023.20230311.66589-9) ... 224s Selecting previously unselected package libtcl8.6:ppc64el. 224s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ... 224s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ... 224s Selecting previously unselected package libteckit0:ppc64el. 224s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_ppc64el.deb ... 224s Unpacking libteckit0:ppc64el (2.5.12+ds1-1) ... 224s Selecting previously unselected package libtexlua53-5:ppc64el. 224s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_ppc64el.deb ... 224s Unpacking libtexlua53-5:ppc64el (2023.20230311.66589-9) ... 224s Selecting previously unselected package libjbig0:ppc64el. 224s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 224s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 224s Selecting previously unselected package libwebp7:ppc64el. 224s Preparing to unpack .../121-libwebp7_1.3.2-0.4_ppc64el.deb ... 224s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 224s Selecting previously unselected package libtiff6:ppc64el. 224s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 224s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 224s Selecting previously unselected package libxft2:ppc64el. 224s Preparing to unpack .../123-libxft2_2.3.6-1_ppc64el.deb ... 224s Unpacking libxft2:ppc64el (2.3.6-1) ... 224s Selecting previously unselected package libxss1:ppc64el. 224s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_ppc64el.deb ... 224s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ... 224s Selecting previously unselected package libtk8.6:ppc64el. 224s Preparing to unpack .../125-libtk8.6_8.6.13-2_ppc64el.deb ... 224s Unpacking libtk8.6:ppc64el (8.6.13-2) ... 224s Selecting previously unselected package libxt6:ppc64el. 224s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_ppc64el.deb ... 224s Unpacking libxt6:ppc64el (1:1.2.1-1.1) ... 225s Selecting previously unselected package libxmu6:ppc64el. 225s Preparing to unpack .../127-libxmu6_2%3a1.1.3-3_ppc64el.deb ... 225s Unpacking libxmu6:ppc64el (2:1.1.3-3) ... 225s Selecting previously unselected package libxpm4:ppc64el. 225s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1_ppc64el.deb ... 225s Unpacking libxpm4:ppc64el (1:3.5.17-1) ... 225s Selecting previously unselected package libxaw7:ppc64el. 225s Preparing to unpack .../129-libxaw7_2%3a1.0.14-1_ppc64el.deb ... 225s Unpacking libxaw7:ppc64el (2:1.0.14-1) ... 225s Selecting previously unselected package libxi6:ppc64el. 225s Preparing to unpack .../130-libxi6_2%3a1.8.1-1_ppc64el.deb ... 225s Unpacking libxi6:ppc64el (2:1.8.1-1) ... 225s Selecting previously unselected package libzzip-0-13:ppc64el. 225s Preparing to unpack .../131-libzzip-0-13_0.13.72+dfsg.1-1.1_ppc64el.deb ... 225s Unpacking libzzip-0-13:ppc64el (0.13.72+dfsg.1-1.1) ... 225s Selecting previously unselected package node-bootstrap-sass. 225s Preparing to unpack .../132-node-bootstrap-sass_3.4.3-2_all.deb ... 225s Unpacking node-bootstrap-sass (3.4.3-2) ... 225s Selecting previously unselected package node-html5shiv. 225s Preparing to unpack .../133-node-html5shiv_3.7.3+dfsg-5_all.deb ... 225s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 225s Selecting previously unselected package node-normalize.css. 225s Preparing to unpack .../134-node-normalize.css_8.0.1-5_all.deb ... 225s Unpacking node-normalize.css (8.0.1-5) ... 225s Selecting previously unselected package pandoc-data. 225s Preparing to unpack .../135-pandoc-data_3.1.3-1_all.deb ... 225s Unpacking pandoc-data (3.1.3-1) ... 225s Selecting previously unselected package pandoc. 225s Preparing to unpack .../136-pandoc_3.1.3+ds-2_ppc64el.deb ... 225s Unpacking pandoc (3.1.3+ds-2) ... 226s Selecting previously unselected package pkgconf-bin. 226s Preparing to unpack .../137-pkgconf-bin_1.8.1-2_ppc64el.deb ... 226s Unpacking pkgconf-bin (1.8.1-2) ... 226s Selecting previously unselected package pkgconf:ppc64el. 226s Preparing to unpack .../138-pkgconf_1.8.1-2_ppc64el.deb ... 226s Unpacking pkgconf:ppc64el (1.8.1-2) ... 226s Selecting previously unselected package pkg-config:ppc64el. 226s Preparing to unpack .../139-pkg-config_1.8.1-2_ppc64el.deb ... 226s Unpacking pkg-config:ppc64el (1.8.1-2) ... 226s Selecting previously unselected package zip. 226s Preparing to unpack .../140-zip_3.0-13_ppc64el.deb ... 226s Unpacking zip (3.0-13) ... 226s Selecting previously unselected package unzip. 226s Preparing to unpack .../141-unzip_6.0-28ubuntu3_ppc64el.deb ... 226s Unpacking unzip (6.0-28ubuntu3) ... 226s Selecting previously unselected package xdg-utils. 226s Preparing to unpack .../142-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 226s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 226s Selecting previously unselected package r-base-core. 226s Preparing to unpack .../143-r-base-core_4.3.2-1build1_ppc64el.deb ... 226s Unpacking r-base-core (4.3.2-1build1) ... 227s Selecting previously unselected package liblzma-dev:ppc64el. 227s Preparing to unpack .../144-liblzma-dev_5.4.5-0.3_ppc64el.deb ... 227s Unpacking liblzma-dev:ppc64el (5.4.5-0.3) ... 227s Selecting previously unselected package r-base-dev. 227s Preparing to unpack .../145-r-base-dev_4.3.2-1build1_all.deb ... 227s Unpacking r-base-dev (4.3.2-1build1) ... 227s Selecting previously unselected package pkg-r-autopkgtest. 227s Preparing to unpack .../146-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 227s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 227s Selecting previously unselected package r-bioc-biocgenerics. 227s Preparing to unpack .../147-r-bioc-biocgenerics_0.48.1-2_all.deb ... 227s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 227s Selecting previously unselected package r-bioc-biobase. 227s Preparing to unpack .../148-r-bioc-biobase_2.62.0-1_ppc64el.deb ... 227s Unpacking r-bioc-biobase (2.62.0-1) ... 227s Selecting previously unselected package r-bioc-s4vectors. 227s Preparing to unpack .../149-r-bioc-s4vectors_0.40.2+dfsg-1_ppc64el.deb ... 227s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 227s Selecting previously unselected package r-bioc-iranges. 227s Preparing to unpack .../150-r-bioc-iranges_2.36.0-1_ppc64el.deb ... 227s Unpacking r-bioc-iranges (2.36.0-1) ... 227s Selecting previously unselected package r-cran-dbi. 227s Preparing to unpack .../151-r-cran-dbi_1.2.2-1_all.deb ... 227s Unpacking r-cran-dbi (1.2.2-1) ... 227s Selecting previously unselected package r-cran-bit. 227s Preparing to unpack .../152-r-cran-bit_4.0.5-1_ppc64el.deb ... 227s Unpacking r-cran-bit (4.0.5-1) ... 227s Selecting previously unselected package r-cran-bit64. 227s Preparing to unpack .../153-r-cran-bit64_4.0.5-1_ppc64el.deb ... 227s Unpacking r-cran-bit64 (4.0.5-1) ... 227s Selecting previously unselected package r-cran-rlang. 227s Preparing to unpack .../154-r-cran-rlang_1.1.3-1_ppc64el.deb ... 227s Unpacking r-cran-rlang (1.1.3-1) ... 227s Selecting previously unselected package r-cran-cli. 227s Preparing to unpack .../155-r-cran-cli_3.6.2-1_ppc64el.deb ... 227s Unpacking r-cran-cli (3.6.2-1) ... 227s Selecting previously unselected package r-cran-glue. 227s Preparing to unpack .../156-r-cran-glue_1.7.0-1_ppc64el.deb ... 227s Unpacking r-cran-glue (1.7.0-1) ... 227s Selecting previously unselected package r-cran-lifecycle. 227s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 227s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 227s Selecting previously unselected package r-cran-vctrs. 227s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_ppc64el.deb ... 227s Unpacking r-cran-vctrs (0.6.5-1) ... 227s Selecting previously unselected package r-cran-blob. 227s Preparing to unpack .../159-r-cran-blob_1.2.4-1_all.deb ... 227s Unpacking r-cran-blob (1.2.4-1) ... 227s Selecting previously unselected package r-cran-fastmap. 227s Preparing to unpack .../160-r-cran-fastmap_1.1.1-1_ppc64el.deb ... 227s Unpacking r-cran-fastmap (1.1.1-1) ... 227s Selecting previously unselected package r-cran-cachem. 227s Preparing to unpack .../161-r-cran-cachem_1.0.8-1_ppc64el.deb ... 227s Unpacking r-cran-cachem (1.0.8-1) ... 227s Selecting previously unselected package r-cran-memoise. 227s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 227s Unpacking r-cran-memoise (2.0.1-1) ... 227s Selecting previously unselected package r-cran-pkgconfig. 227s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 227s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 227s Selecting previously unselected package r-cran-plogr. 227s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build1_all.deb ... 227s Unpacking r-cran-plogr (0.2.0-3build1) ... 227s Selecting previously unselected package r-cran-cpp11. 227s Preparing to unpack .../165-r-cran-cpp11_0.4.7-1_all.deb ... 227s Unpacking r-cran-cpp11 (0.4.7-1) ... 227s Selecting previously unselected package r-cran-rsqlite. 227s Preparing to unpack .../166-r-cran-rsqlite_2.3.4-1_ppc64el.deb ... 227s Unpacking r-cran-rsqlite (2.3.4-1) ... 228s Selecting previously unselected package r-cran-curl. 228s Preparing to unpack .../167-r-cran-curl_5.2.0+dfsg-1_ppc64el.deb ... 228s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 228s Selecting previously unselected package r-cran-jsonlite. 228s Preparing to unpack .../168-r-cran-jsonlite_1.8.8+dfsg-1_ppc64el.deb ... 228s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 228s Selecting previously unselected package r-cran-mime. 228s Preparing to unpack .../169-r-cran-mime_0.12-1_ppc64el.deb ... 228s Unpacking r-cran-mime (0.12-1) ... 228s Selecting previously unselected package r-cran-sys. 228s Preparing to unpack .../170-r-cran-sys_3.4.2-1_ppc64el.deb ... 228s Unpacking r-cran-sys (3.4.2-1) ... 228s Selecting previously unselected package r-cran-askpass. 228s Preparing to unpack .../171-r-cran-askpass_1.2.0-1_ppc64el.deb ... 228s Unpacking r-cran-askpass (1.2.0-1) ... 228s Selecting previously unselected package r-cran-openssl. 228s Preparing to unpack .../172-r-cran-openssl_2.1.1+dfsg-2_ppc64el.deb ... 228s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 228s Selecting previously unselected package r-cran-r6. 228s Preparing to unpack .../173-r-cran-r6_2.5.1-1_all.deb ... 228s Unpacking r-cran-r6 (2.5.1-1) ... 228s Selecting previously unselected package r-cran-httr. 228s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 228s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 228s Selecting previously unselected package r-cran-png. 228s Preparing to unpack .../175-r-cran-png_0.1-8-1_ppc64el.deb ... 228s Unpacking r-cran-png (0.1-8-1) ... 228s Selecting previously unselected package r-bioc-zlibbioc. 228s Preparing to unpack .../176-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 228s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 228s Selecting previously unselected package r-bioc-xvector. 228s Preparing to unpack .../177-r-bioc-xvector_0.42.0-1_ppc64el.deb ... 228s Unpacking r-bioc-xvector (0.42.0-1) ... 228s Selecting previously unselected package r-cran-bitops. 228s Preparing to unpack .../178-r-cran-bitops_1.0-7-1_ppc64el.deb ... 228s Unpacking r-cran-bitops (1.0-7-1) ... 228s Selecting previously unselected package r-cran-rcurl. 228s Preparing to unpack .../179-r-cran-rcurl_1.98-1.14+dfsg-1_ppc64el.deb ... 228s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 228s Selecting previously unselected package r-bioc-genomeinfodbdata. 228s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 228s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 228s Selecting previously unselected package r-bioc-genomeinfodb. 228s Preparing to unpack .../181-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 228s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 228s Selecting previously unselected package r-cran-crayon. 228s Preparing to unpack .../182-r-cran-crayon_1.5.2-1_all.deb ... 228s Unpacking r-cran-crayon (1.5.2-1) ... 228s Selecting previously unselected package r-bioc-biostrings. 228s Preparing to unpack .../183-r-bioc-biostrings_2.70.2+dfsg-1_ppc64el.deb ... 228s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 228s Selecting previously unselected package r-bioc-keggrest. 228s Preparing to unpack .../184-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 228s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 228s Selecting previously unselected package r-bioc-annotationdbi. 228s Preparing to unpack .../185-r-bioc-annotationdbi_1.64.1-1_all.deb ... 228s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 228s Selecting previously unselected package r-cran-xml. 228s Preparing to unpack .../186-r-cran-xml_3.99-0.16.1-1_ppc64el.deb ... 228s Unpacking r-cran-xml (3.99-0.16.1-1) ... 228s Selecting previously unselected package r-cran-xtable. 228s Preparing to unpack .../187-r-cran-xtable_1%3a1.8-4-2_all.deb ... 228s Unpacking r-cran-xtable (1:1.8-4-2) ... 228s Selecting previously unselected package r-bioc-annotate. 228s Preparing to unpack .../188-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 228s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 228s Selecting previously unselected package r-cran-generics. 228s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 228s Unpacking r-cran-generics (0.1.3-1) ... 229s Selecting previously unselected package r-cran-magrittr. 229s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_ppc64el.deb ... 229s Unpacking r-cran-magrittr (2.0.3-1) ... 229s Selecting previously unselected package r-cran-fansi. 229s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_ppc64el.deb ... 229s Unpacking r-cran-fansi (1.0.5-1) ... 229s Selecting previously unselected package r-cran-utf8. 229s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_ppc64el.deb ... 229s Unpacking r-cran-utf8 (1.2.4-1) ... 229s Selecting previously unselected package r-cran-pillar. 229s Preparing to unpack .../193-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 229s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 229s Selecting previously unselected package r-cran-tibble. 229s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-2_ppc64el.deb ... 229s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 229s Selecting previously unselected package r-cran-withr. 229s Preparing to unpack .../195-r-cran-withr_2.5.0-1_all.deb ... 229s Unpacking r-cran-withr (2.5.0-1) ... 229s Selecting previously unselected package r-cran-tidyselect. 229s Preparing to unpack .../196-r-cran-tidyselect_1.2.0+dfsg-1_ppc64el.deb ... 229s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 229s Selecting previously unselected package r-cran-dplyr. 229s Preparing to unpack .../197-r-cran-dplyr_1.1.4-1_ppc64el.deb ... 229s Unpacking r-cran-dplyr (1.1.4-1) ... 229s Selecting previously unselected package r-cran-purrr. 229s Preparing to unpack .../198-r-cran-purrr_1.0.2-1_ppc64el.deb ... 229s Unpacking r-cran-purrr (1.0.2-1) ... 229s Selecting previously unselected package r-cran-stringi. 229s Preparing to unpack .../199-r-cran-stringi_1.8.3-1_ppc64el.deb ... 229s Unpacking r-cran-stringi (1.8.3-1) ... 229s Selecting previously unselected package r-cran-stringr. 229s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 229s Unpacking r-cran-stringr (1.5.1-1) ... 229s Selecting previously unselected package r-cran-tidyr. 229s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_ppc64el.deb ... 229s Unpacking r-cran-tidyr (1.3.1-1) ... 229s Selecting previously unselected package r-cran-dbplyr. 229s Preparing to unpack .../202-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 229s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 229s Selecting previously unselected package r-cran-filelock. 229s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_ppc64el.deb ... 229s Unpacking r-cran-filelock (1.0.3-1) ... 229s Selecting previously unselected package r-bioc-biocfilecache. 229s Preparing to unpack .../204-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 229s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 229s Selecting previously unselected package r-bioc-biocio. 229s Preparing to unpack .../205-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 229s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 229s Selecting previously unselected package r-cran-formatr. 229s Preparing to unpack .../206-r-cran-formatr_1.14-1_all.deb ... 229s Unpacking r-cran-formatr (1.14-1) ... 229s Selecting previously unselected package r-cran-lambda.r. 229s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ... 229s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 229s Selecting previously unselected package r-cran-futile.options. 229s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build1_all.deb ... 229s Unpacking r-cran-futile.options (1.0.1-3build1) ... 229s Selecting previously unselected package r-cran-futile.logger. 229s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build1_all.deb ... 229s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 229s Selecting previously unselected package r-cran-snow. 229s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2_all.deb ... 229s Unpacking r-cran-snow (1:0.4.4-2) ... 229s Selecting previously unselected package r-cran-codetools. 229s Preparing to unpack .../211-r-cran-codetools_0.2-19-1_all.deb ... 229s Unpacking r-cran-codetools (0.2-19-1) ... 229s Selecting previously unselected package r-cran-bh. 229s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 229s Unpacking r-cran-bh (1.84.0-1) ... 229s Selecting previously unselected package r-bioc-biocparallel. 229s Preparing to unpack .../213-r-bioc-biocparallel_1.36.0-1_ppc64el.deb ... 229s Unpacking r-bioc-biocparallel (1.36.0-1) ... 229s Selecting previously unselected package r-cran-base64enc. 229s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_ppc64el.deb ... 229s Unpacking r-cran-base64enc (0.1-3-3) ... 229s Selecting previously unselected package r-cran-digest. 229s Preparing to unpack .../215-r-cran-digest_0.6.34-1_ppc64el.deb ... 229s Unpacking r-cran-digest (0.6.34-1) ... 229s Selecting previously unselected package r-cran-ellipsis. 229s Preparing to unpack .../216-r-cran-ellipsis_0.3.2-2_ppc64el.deb ... 229s Unpacking r-cran-ellipsis (0.3.2-2) ... 229s Selecting previously unselected package r-cran-htmltools. 229s Preparing to unpack .../217-r-cran-htmltools_0.5.7-1_ppc64el.deb ... 229s Unpacking r-cran-htmltools (0.5.7-1) ... 229s Selecting previously unselected package r-cran-evaluate. 229s Preparing to unpack .../218-r-cran-evaluate_0.23-1_all.deb ... 229s Unpacking r-cran-evaluate (0.23-1) ... 229s Selecting previously unselected package r-cran-xfun. 229s Preparing to unpack .../219-r-cran-xfun_0.41+dfsg-1_ppc64el.deb ... 229s Unpacking r-cran-xfun (0.41+dfsg-1) ... 229s Selecting previously unselected package r-cran-highr. 230s Preparing to unpack .../220-r-cran-highr_0.10+dfsg-1_all.deb ... 230s Unpacking r-cran-highr (0.10+dfsg-1) ... 230s Selecting previously unselected package r-cran-yaml. 230s Preparing to unpack .../221-r-cran-yaml_2.3.8-1_ppc64el.deb ... 230s Unpacking r-cran-yaml (2.3.8-1) ... 230s Selecting previously unselected package libjs-mathjax. 230s Preparing to unpack .../222-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 230s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 231s Selecting previously unselected package r-cran-knitr. 231s Preparing to unpack .../223-r-cran-knitr_1.45+dfsg-1_all.deb ... 231s Unpacking r-cran-knitr (1.45+dfsg-1) ... 231s Selecting previously unselected package r-cran-jquerylib. 231s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 231s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 231s Selecting previously unselected package r-cran-fs. 231s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_ppc64el.deb ... 231s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 231s Selecting previously unselected package r-cran-rappdirs. 231s Preparing to unpack .../226-r-cran-rappdirs_0.3.3-1_ppc64el.deb ... 231s Unpacking r-cran-rappdirs (0.3.3-1) ... 231s Selecting previously unselected package r-cran-sass. 231s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_ppc64el.deb ... 231s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 231s Selecting previously unselected package r-cran-bslib. 231s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 231s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 231s Selecting previously unselected package r-cran-fontawesome. 231s Preparing to unpack .../229-r-cran-fontawesome_0.5.2-1_all.deb ... 231s Unpacking r-cran-fontawesome (0.5.2-1) ... 231s Selecting previously unselected package r-cran-tinytex. 231s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 231s Unpacking r-cran-tinytex (0.49-1) ... 231s Selecting previously unselected package libjs-modernizr. 231s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 231s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 231s Selecting previously unselected package r-cran-littler. 231s Preparing to unpack .../232-r-cran-littler_0.3.19-1_ppc64el.deb ... 231s Unpacking r-cran-littler (0.3.19-1) ... 231s Selecting previously unselected package r-cran-pkgkitten. 231s Preparing to unpack .../233-r-cran-pkgkitten_0.2.3-1_all.deb ... 231s Unpacking r-cran-pkgkitten (0.2.3-1) ... 231s Selecting previously unselected package r-cran-rcpp. 231s Preparing to unpack .../234-r-cran-rcpp_1.0.12-1_ppc64el.deb ... 231s Unpacking r-cran-rcpp (1.0.12-1) ... 232s Selecting previously unselected package r-cran-later. 232s Preparing to unpack .../235-r-cran-later_1.3.2+dfsg-1_ppc64el.deb ... 232s Unpacking r-cran-later (1.3.2+dfsg-1) ... 232s Selecting previously unselected package r-cran-promises. 232s Preparing to unpack .../236-r-cran-promises_1.2.1+dfsg-1_ppc64el.deb ... 232s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 232s Selecting previously unselected package r-cran-httpuv. 232s Preparing to unpack .../237-r-cran-httpuv_1.6.14+dfsg-1_ppc64el.deb ... 232s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 232s Selecting previously unselected package r-cran-sourcetools. 232s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_ppc64el.deb ... 232s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 233s Selecting previously unselected package r-cran-commonmark. 233s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_ppc64el.deb ... 233s Unpacking r-cran-commonmark (1.9.1-1) ... 233s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 233s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 233s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 233s Selecting previously unselected package r-cran-shiny. 233s Preparing to unpack .../241-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 233s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 233s Selecting previously unselected package r-cran-rmarkdown. 233s Preparing to unpack .../242-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 233s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 233s Selecting previously unselected package r-cran-bookdown. 233s Preparing to unpack .../243-r-cran-bookdown_0.37+dfsg-1_all.deb ... 233s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 233s Selecting previously unselected package r-cran-biocmanager. 233s Preparing to unpack .../244-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 233s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 233s Selecting previously unselected package tex-common. 233s Preparing to unpack .../245-tex-common_6.18_all.deb ... 233s Unpacking tex-common (6.18) ... 233s Selecting previously unselected package t1utils. 233s Preparing to unpack .../246-t1utils_1.41-4build2_ppc64el.deb ... 233s Unpacking t1utils (1.41-4build2) ... 233s Selecting previously unselected package texlive-binaries. 233s Preparing to unpack .../247-texlive-binaries_2023.20230311.66589-9_ppc64el.deb ... 233s Unpacking texlive-binaries (2023.20230311.66589-9) ... 233s Selecting previously unselected package texlive-base. 233s Preparing to unpack .../248-texlive-base_2023.20240207-1_all.deb ... 233s Unpacking texlive-base (2023.20240207-1) ... 235s Selecting previously unselected package texlive-latex-base. 235s Preparing to unpack .../249-texlive-latex-base_2023.20240207-1_all.deb ... 235s Unpacking texlive-latex-base (2023.20240207-1) ... 235s Selecting previously unselected package texlive-bibtex-extra. 235s Preparing to unpack .../250-texlive-bibtex-extra_2023.20240207-1_all.deb ... 235s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 242s Selecting previously unselected package r-bioc-biocstyle. 242s Preparing to unpack .../251-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 242s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 242s Selecting previously unselected package r-cran-hms. 242s Preparing to unpack .../252-r-cran-hms_1.1.3-1_all.deb ... 242s Unpacking r-cran-hms (1.1.3-1) ... 242s Selecting previously unselected package r-cran-prettyunits. 242s Preparing to unpack .../253-r-cran-prettyunits_1.2.0-1_all.deb ... 242s Unpacking r-cran-prettyunits (1.2.0-1) ... 242s Selecting previously unselected package r-cran-progress. 242s Preparing to unpack .../254-r-cran-progress_1.2.3-1_all.deb ... 242s Unpacking r-cran-progress (1.2.3-1) ... 242s Selecting previously unselected package r-cran-xml2. 242s Preparing to unpack .../255-r-cran-xml2_1.3.6-1_ppc64el.deb ... 242s Unpacking r-cran-xml2 (1.3.6-1) ... 242s Selecting previously unselected package r-bioc-biomart. 242s Preparing to unpack .../256-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 242s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 242s Selecting previously unselected package r-bioc-genomicranges. 242s Preparing to unpack .../257-r-bioc-genomicranges_1.54.1+dfsg-1_ppc64el.deb ... 242s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 242s Selecting previously unselected package r-bioc-rhtslib. 242s Preparing to unpack .../258-r-bioc-rhtslib_2.4.1+dfsg-1_ppc64el.deb ... 242s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 242s Selecting previously unselected package r-bioc-rsamtools. 242s Preparing to unpack .../259-r-bioc-rsamtools_2.18.0+dfsg-1build1_ppc64el.deb ... 242s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 242s Selecting previously unselected package r-cran-matrixstats. 242s Preparing to unpack .../260-r-cran-matrixstats_1.2.0-1_ppc64el.deb ... 242s Unpacking r-cran-matrixstats (1.2.0-1) ... 242s Selecting previously unselected package r-bioc-matrixgenerics. 242s Preparing to unpack .../261-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 242s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 243s Selecting previously unselected package r-cran-lattice. 243s Preparing to unpack .../262-r-cran-lattice_0.22-5-1_ppc64el.deb ... 243s Unpacking r-cran-lattice (0.22-5-1) ... 243s Selecting previously unselected package r-cran-matrix. 243s Preparing to unpack .../263-r-cran-matrix_1.6-5-1_ppc64el.deb ... 243s Unpacking r-cran-matrix (1.6-5-1) ... 243s Selecting previously unselected package r-cran-abind. 243s Preparing to unpack .../264-r-cran-abind_1.4-5-2_all.deb ... 243s Unpacking r-cran-abind (1.4-5-2) ... 243s Selecting previously unselected package r-bioc-s4arrays. 243s Preparing to unpack .../265-r-bioc-s4arrays_1.2.0+dfsg-1_ppc64el.deb ... 243s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 243s Selecting previously unselected package r-bioc-sparsearray. 243s Preparing to unpack .../266-r-bioc-sparsearray_1.2.4+dfsg-1_ppc64el.deb ... 243s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 243s Selecting previously unselected package r-bioc-delayedarray. 243s Preparing to unpack .../267-r-bioc-delayedarray_0.28.0+dfsg-1_ppc64el.deb ... 243s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 243s Selecting previously unselected package r-bioc-summarizedexperiment. 243s Preparing to unpack .../268-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 243s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 243s Selecting previously unselected package r-bioc-genomicalignments. 243s Preparing to unpack .../269-r-bioc-genomicalignments_1.38.2-1_ppc64el.deb ... 243s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 243s Selecting previously unselected package r-cran-rjson. 243s Preparing to unpack .../270-r-cran-rjson_0.2.21-1_ppc64el.deb ... 243s Unpacking r-cran-rjson (0.2.21-1) ... 243s Selecting previously unselected package r-cran-restfulr. 243s Preparing to unpack .../271-r-cran-restfulr_0.0.15-1_ppc64el.deb ... 243s Unpacking r-cran-restfulr (0.0.15-1) ... 243s Selecting previously unselected package r-bioc-rtracklayer. 243s Preparing to unpack .../272-r-bioc-rtracklayer_1.62.0-1_ppc64el.deb ... 243s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 243s Selecting previously unselected package r-bioc-bsgenome. 243s Preparing to unpack .../273-r-bioc-bsgenome_1.70.2-1_all.deb ... 243s Unpacking r-bioc-bsgenome (1.70.2-1) ... 243s Selecting previously unselected package r-cran-survival. 243s Preparing to unpack .../274-r-cran-survival_3.5-8-1_ppc64el.deb ... 243s Unpacking r-cran-survival (3.5-8-1) ... 243s Selecting previously unselected package r-bioc-genefilter. 243s Preparing to unpack .../275-r-bioc-genefilter_1.84.0-1_ppc64el.deb ... 243s Unpacking r-bioc-genefilter (1.84.0-1) ... 243s Selecting previously unselected package r-bioc-genomicfeatures. 243s Preparing to unpack .../276-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 243s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 243s Selecting previously unselected package r-bioc-variantannotation. 243s Preparing to unpack .../277-r-bioc-variantannotation_1.48.1-1_ppc64el.deb ... 243s Unpacking r-bioc-variantannotation (1.48.1-1) ... 243s Selecting previously unselected package r-bioc-genomicfiles. 243s Preparing to unpack .../278-r-bioc-genomicfiles_1.38.0+dfsg-1_all.deb ... 243s Unpacking r-bioc-genomicfiles (1.38.0+dfsg-1) ... 243s Selecting previously unselected package r-bioc-snpstats. 243s Preparing to unpack .../279-r-bioc-snpstats_1.52.0+dfsg-1_ppc64el.deb ... 243s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 243s Selecting previously unselected package r-cran-runit. 243s Preparing to unpack .../280-r-cran-runit_0.4.32-3_all.deb ... 243s Unpacking r-cran-runit (0.4.32-3) ... 244s Selecting previously unselected package autopkgtest-satdep. 244s Preparing to unpack .../281-1-autopkgtest-satdep.deb ... 244s Unpacking autopkgtest-satdep (0) ... 244s 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gfortran (4:13.2.0-7ubuntu1) ... 250s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 250s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 250s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 250s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 250s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 250s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 250s Setting up texlive-bibtex-extra (2023.20240207-1) ... 250s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 250s Setting up r-cran-httr (1.4.7+dfsg-1) ... 250s Setting up r-cran-hms (1.1.3-1) ... 250s Setting up r-cran-memoise (2.0.1-1) ... 250s Setting up r-cran-promises (1.2.1+dfsg-1) ... 250s Setting up r-cran-purrr (1.0.2-1) ... 250s Setting up r-cran-blob (1.2.4-1) ... 250s Setting up r-cran-htmltools (0.5.7-1) ... 250s Setting up r-bioc-xvector (0.42.0-1) ... 250s Setting up r-cran-sass (0.4.8+dfsg-1) ... 250s Setting up r-cran-dplyr (1.1.4-1) ... 250s Setting up r-cran-rsqlite (2.3.4-1) ... 250s Setting up r-cran-progress (1.2.3-1) ... 250s Setting up r-base-dev (4.3.2-1build1) ... 250s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 250s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 250s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 250s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 250s Setting up r-cran-fontawesome (0.5.2-1) ... 250s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 250s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 250s Setting up r-cran-tidyr (1.3.1-1) ... 250s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 250s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 250s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 250s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 250s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 250s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 250s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 250s Setting up r-bioc-annotationdbi (1.64.1-1) ... 250s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 250s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 250s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 250s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 250s Setting up r-bioc-genefilter (1.84.0-1) ... 250s Setting up r-bioc-genomicalignments (1.38.2-1) ... 250s Setting up r-cran-bookdown (0.37+dfsg-1) ... 250s Setting up r-bioc-rtracklayer (1.62.0-1) ... 250s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 250s Setting up r-bioc-bsgenome (1.70.2-1) ... 250s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 250s Setting up r-bioc-variantannotation (1.48.1-1) ... 250s Setting up r-bioc-genomicfiles (1.38.0+dfsg-1) ... 250s Setting up autopkgtest-satdep (0) ... 250s Processing triggers for man-db (2.12.0-3) ... 251s Processing triggers for install-info (7.1-3) ... 252s Processing triggers for libc-bin (2.39-0ubuntu2) ... 252s Processing triggers for tex-common (6.18) ... 252s Running updmap-sys. This may take some time... done. 252s Running mktexlsr /var/lib/texmf ... done. 252s Building format(s) --all. 302s This may take some time... done. 311s (Reading database ... 119897 files and directories currently installed.) 311s Removing autopkgtest-satdep (0) ... 311s autopkgtest [21:43:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 311s autopkgtest [21:43:25]: test pkg-r-autopkgtest: [----------------------- 312s Test: Try to load the R library GenomicFiles 312s 312s R version 4.3.2 (2023-10-31) -- "Eye Holes" 312s Copyright (C) 2023 The R Foundation for Statistical Computing 312s Platform: powerpc64le-unknown-linux-gnu (64-bit) 312s 312s R is free software and comes with ABSOLUTELY NO WARRANTY. 312s You are welcome to redistribute it under certain conditions. 312s Type 'license()' or 'licence()' for distribution details. 312s 312s R is a collaborative project with many contributors. 312s Type 'contributors()' for more information and 312s 'citation()' on how to cite R or R packages in publications. 312s 312s Type 'demo()' for some demos, 'help()' for on-line help, or 312s 'help.start()' for an HTML browser interface to help. 312s Type 'q()' to quit R. 312s 312s > library('GenomicFiles') 312s Loading required package: BiocGenerics 312s 312s Attaching package: ‘BiocGenerics’ 312s 312s The following objects are masked from ‘package:stats’: 312s 312s IQR, mad, sd, var, xtabs 312s 312s The following objects are masked from ‘package:base’: 312s 312s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 312s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 312s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 312s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 312s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 312s table, tapply, union, unique, unsplit, which.max, which.min 312s 312s Loading required package: MatrixGenerics 312s Loading required package: matrixStats 312s 312s Attaching package: ‘MatrixGenerics’ 312s 312s The following objects are masked from ‘package:matrixStats’: 312s 312s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 312s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 312s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 312s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 312s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 312s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 312s colWeightedMeans, colWeightedMedians, colWeightedSds, 312s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 312s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 312s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 312s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 312s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 312s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 312s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 312s rowWeightedSds, rowWeightedVars 312s 312s Loading required package: GenomicRanges 312s Loading required package: stats4 312s Loading required package: S4Vectors 313s 313s Attaching package: ‘S4Vectors’ 313s 313s The following object is masked from ‘package:utils’: 313s 313s findMatches 313s 313s The following objects are masked from ‘package:base’: 313s 313s expand.grid, I, unname 313s 313s Loading required package: IRanges 314s Loading required package: GenomeInfoDb 315s Loading required package: SummarizedExperiment 315s Loading required package: Biobase 315s Welcome to Bioconductor 315s 315s Vignettes contain introductory material; view with 315s 'browseVignettes()'. To cite Bioconductor, see 315s 'citation("Biobase")', and for packages 'citation("pkgname")'. 315s 315s 315s Attaching package: ‘Biobase’ 315s 315s The following object is masked from ‘package:MatrixGenerics’: 315s 315s rowMedians 315s 315s The following objects are masked from ‘package:matrixStats’: 315s 315s anyMissing, rowMedians 315s 318s Loading required package: BiocParallel 318s Loading required package: Rsamtools 318s Loading required package: Biostrings 318s Loading required package: XVector 319s 319s Attaching package: ‘Biostrings’ 319s 319s The following object is masked from ‘package:base’: 319s 319s strsplit 319s 319s Loading required package: rtracklayer 325s Warning message: 325s package ‘Rsamtools’ was built under R version 4.3.3 325s > 325s > 325s Other tests are currently unsupported! 325s They will be progressively added. 325s autopkgtest [21:43:39]: test pkg-r-autopkgtest: -----------------------] 325s autopkgtest [21:43:39]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 325s pkg-r-autopkgtest PASS 326s autopkgtest [21:43:40]: @@@@@@@@@@@@@@@@@@@@ summary 326s pkg-r-autopkgtest PASS 336s Creating nova instance adt-noble-ppc64el-r-bioc-genomicfiles-20240317-213814-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240316.img (UUID 5f323cde-6357-475d-9beb-0cc93b49185c)...