0s autopkgtest [23:53:23]: starting date and time: 2024-04-18 23:53:23+0000 0s autopkgtest [23:53:23]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [23:53:23]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jnsqhtag/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gsl --apt-upgrade qtltools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gsl/2.7.1+dfsg-6ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-5.secgroup --name adt-noble-ppc64el-qtltools-20240418-235323-juju-7f2275-prod-proposed-migration-environment-2-731987da-023c-410f-ad4c-8a1db119806e --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 103s autopkgtest [23:55:06]: testbed dpkg architecture: ppc64el 103s autopkgtest [23:55:06]: testbed apt version: 2.7.14build2 103s autopkgtest [23:55:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 104s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 104s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.2 kB] 104s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [57.5 kB] 104s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [381 kB] 104s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B] 104s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [112 kB] 105s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 105s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [976 B] 105s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 105s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [587 kB] 105s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 105s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [1004 B] 105s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 107s Fetched 1282 kB in 1s (1262 kB/s) 107s Reading package lists... 109s sh: 4: dhclient: not found 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade... 110s The following packages will be upgraded: 110s libkeyutils1 libnuma1 make netcat-openbsd numactl 110s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Need to get 343 kB of archives. 110s After this operation, 16.4 kB disk space will be freed. 110s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libkeyutils1 ppc64el 1.6.3-3build1 [11.0 kB] 110s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el netcat-openbsd ppc64el 1.226-1ubuntu2 [46.2 kB] 110s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libnuma1 ppc64el 2.0.18-1build1 [28.2 kB] 110s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el make ppc64el 4.3-4.1build2 [214 kB] 111s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el numactl ppc64el 2.0.18-1build1 [43.9 kB] 111s Fetched 343 kB in 1s (611 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 111s Preparing to unpack .../libkeyutils1_1.6.3-3build1_ppc64el.deb ... 111s Unpacking libkeyutils1:ppc64el (1.6.3-3build1) over (1.6.3-3) ... 111s Preparing to unpack .../netcat-openbsd_1.226-1ubuntu2_ppc64el.deb ... 111s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ... 111s Preparing to unpack .../libnuma1_2.0.18-1build1_ppc64el.deb ... 111s Unpacking libnuma1:ppc64el (2.0.18-1build1) over (2.0.18-1) ... 111s Preparing to unpack .../make_4.3-4.1build2_ppc64el.deb ... 111s Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ... 111s Preparing to unpack .../numactl_2.0.18-1build1_ppc64el.deb ... 111s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ... 111s Setting up libkeyutils1:ppc64el (1.6.3-3build1) ... 111s Setting up netcat-openbsd (1.226-1ubuntu2) ... 111s Setting up make (4.3-4.1build2) ... 111s Setting up libnuma1:ppc64el (2.0.18-1build1) ... 111s Setting up numactl (2.0.18-1build1) ... 111s Processing triggers for man-db (2.12.0-4build1) ... 112s Processing triggers for libc-bin (2.39-0ubuntu8) ... 112s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 113s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 113s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 115s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [23:55:21]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr 4 22:47:57 UTC 2024 118s autopkgtest [23:55:21]: @@@@@@@@@@@@@@@@@@@@ apt-source qtltools 121s Get:1 http://ftpmaster.internal/ubuntu noble/universe qtltools 1.3.1+dfsg-4build3 (dsc) [2293 B] 121s Get:2 http://ftpmaster.internal/ubuntu noble/universe qtltools 1.3.1+dfsg-4build3 (tar) [141 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble/universe qtltools 1.3.1+dfsg-4build3 (diff) [13.6 MB] 122s gpgv: Signature made Mon Apr 1 07:33:53 2024 UTC 122s gpgv: using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984 122s gpgv: Can't check signature: No public key 122s dpkg-source: warning: cannot verify inline signature for ./qtltools_1.3.1+dfsg-4build3.dsc: no acceptable signature found 122s autopkgtest [23:55:25]: testing package qtltools version 1.3.1+dfsg-4build3 124s autopkgtest [23:55:27]: build not needed 125s autopkgtest [23:55:28]: test run-sample-analysis: preparing testbed 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Starting pkgProblemResolver with broken count: 0 126s Starting 2 pkgProblemResolver with broken count: 0 126s Done 126s The following additional packages will be installed: 126s fontconfig libblas3 libboost-iostreams1.83.0 libboost-program-options1.83.0 126s libcairo2 libdatrie1 libgfortran5 libgomp1 libgraphite2-3 libgsl27 126s libgslcblas0 libharfbuzz0b libhts3t64 libhtscodecs2 libice6 liblapack3 126s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 126s libpaper1 libpixman-1-0 libsm6 libtcl8.6 libthai-data libthai0 libtk8.6 126s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 qtltools 126s qtltools-example r-base-core r-mathlib unzip x11-common xdg-utils zip 126s Suggested packages: 126s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html tcl8.6 tk8.6 126s elpa-ess r-doc-info | r-doc-pdf r-base-html 126s Recommended packages: 126s r-bioc-qvalue r-recommended r-base-dev r-doc-html libfile-mimeinfo-perl 126s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 126s The following NEW packages will be installed: 126s autopkgtest-satdep fontconfig libblas3 libboost-iostreams1.83.0 126s libboost-program-options1.83.0 libcairo2 libdatrie1 libgfortran5 libgomp1 126s libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libhts3t64 libhtscodecs2 126s libice6 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 126s libpaper-utils libpaper1 libpixman-1-0 libsm6 libtcl8.6 libthai-data 126s libthai0 libtk8.6 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 126s libxt6t64 qtltools qtltools-example r-base-core r-mathlib unzip x11-common 126s xdg-utils zip 126s 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. 126s Need to get 56.0 MB/56.0 MB of archives. 126s After this operation, 108 MB of additional disk space will be used. 126s Get:1 /tmp/autopkgtest.7TtTjg/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 127s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB] 127s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 127s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-iostreams1.83.0 ppc64el 1.83.0-2.1ubuntu3 [260 kB] 127s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-program-options1.83.0 ppc64el 1.83.0-2.1ubuntu3 [329 kB] 127s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1build1 [336 kB] 127s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] 127s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] 127s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB] 127s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-3build1 [751 kB] 127s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB] 127s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240412-0ubuntu1 [574 kB] 127s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240412-0ubuntu1 [161 kB] 127s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2build1 [84.6 kB] 127s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgslcblas0 ppc64el 2.7.1+dfsg-6ubuntu2 [86.6 kB] 127s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgsl27 ppc64el 2.7.1+dfsg-6ubuntu2 [1090 kB] 127s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB] 127s Get:18 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 127s Get:19 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3t64 ppc64el 1.19+ds-1.1build3 [569 kB] 127s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB] 127s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build3 [49.1 kB] 127s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 127s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2build1 [158 kB] 127s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB] 127s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.52.1+ds-1build1 [271 kB] 127s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.52.1+ds-1build1 [50.5 kB] 127s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.52.1+ds-1build1 [31.1 kB] 127s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29build1 [13.7 kB] 128s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29build1 [8742 B] 128s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build3 [17.6 kB] 128s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB] 128s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB] 128s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B] 128s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB] 128s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB] 128s Get:36 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-mathlib ppc64el 4.3.3-2build2 [2440 kB] 128s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13build1 [198 kB] 128s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu4 [192 kB] 128s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 128s Get:40 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-core ppc64el 4.3.3-2build2 [27.4 MB] 129s Get:41 http://ftpmaster.internal/ubuntu noble/universe ppc64el qtltools ppc64el 1.3.1+dfsg-4build3 [828 kB] 129s Get:42 http://ftpmaster.internal/ubuntu noble/universe ppc64el qtltools-example all 1.3.1+dfsg-4build3 [13.6 MB] 130s Preconfiguring packages ... 130s Fetched 56.0 MB in 3s (19.0 MB/s) 130s Selecting previously unselected package fontconfig. 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 130s Preparing to unpack .../00-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ... 130s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 130s Selecting previously unselected package libblas3:ppc64el. 130s Preparing to unpack .../01-libblas3_3.12.0-3build1_ppc64el.deb ... 130s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 130s Selecting previously unselected package libboost-iostreams1.83.0:ppc64el. 130s Preparing to unpack .../02-libboost-iostreams1.83.0_1.83.0-2.1ubuntu3_ppc64el.deb ... 130s Unpacking libboost-iostreams1.83.0:ppc64el (1.83.0-2.1ubuntu3) ... 130s Selecting previously unselected package libboost-program-options1.83.0:ppc64el. 130s Preparing to unpack .../03-libboost-program-options1.83.0_1.83.0-2.1ubuntu3_ppc64el.deb ... 130s Unpacking libboost-program-options1.83.0:ppc64el (1.83.0-2.1ubuntu3) ... 130s Selecting previously unselected package libpixman-1-0:ppc64el. 130s Preparing to unpack .../04-libpixman-1-0_0.42.2-1build1_ppc64el.deb ... 130s Unpacking libpixman-1-0:ppc64el (0.42.2-1build1) ... 130s Selecting previously unselected package libxcb-render0:ppc64el. 130s Preparing to unpack .../05-libxcb-render0_1.15-1_ppc64el.deb ... 130s Unpacking libxcb-render0:ppc64el (1.15-1) ... 130s Selecting previously unselected package libxcb-shm0:ppc64el. 130s Preparing to unpack .../06-libxcb-shm0_1.15-1_ppc64el.deb ... 130s Unpacking libxcb-shm0:ppc64el (1.15-1) ... 130s Selecting previously unselected package libxrender1:ppc64el. 130s Preparing to unpack .../07-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ... 130s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ... 130s Selecting previously unselected package libcairo2:ppc64el. 130s Preparing to unpack .../08-libcairo2_1.18.0-3build1_ppc64el.deb ... 130s Unpacking libcairo2:ppc64el (1.18.0-3build1) ... 130s Selecting previously unselected package libdatrie1:ppc64el. 130s Preparing to unpack .../09-libdatrie1_0.2.13-3build1_ppc64el.deb ... 130s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ... 130s Selecting previously unselected package libgfortran5:ppc64el. 130s Preparing to unpack .../10-libgfortran5_14-20240412-0ubuntu1_ppc64el.deb ... 130s Unpacking libgfortran5:ppc64el (14-20240412-0ubuntu1) ... 130s Selecting previously unselected package libgomp1:ppc64el. 130s Preparing to unpack .../11-libgomp1_14-20240412-0ubuntu1_ppc64el.deb ... 130s Unpacking libgomp1:ppc64el (14-20240412-0ubuntu1) ... 130s Selecting previously unselected package libgraphite2-3:ppc64el. 130s Preparing to unpack .../12-libgraphite2-3_1.3.14-2build1_ppc64el.deb ... 130s Unpacking libgraphite2-3:ppc64el (1.3.14-2build1) ... 130s Selecting previously unselected package libgslcblas0:ppc64el. 130s Preparing to unpack .../13-libgslcblas0_2.7.1+dfsg-6ubuntu2_ppc64el.deb ... 130s Unpacking libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ... 130s Selecting previously unselected package libgsl27:ppc64el. 130s Preparing to unpack .../14-libgsl27_2.7.1+dfsg-6ubuntu2_ppc64el.deb ... 130s Unpacking libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ... 130s Selecting previously unselected package libharfbuzz0b:ppc64el. 130s Preparing to unpack .../15-libharfbuzz0b_8.3.0-2build2_ppc64el.deb ... 130s Unpacking libharfbuzz0b:ppc64el (8.3.0-2build2) ... 130s Selecting previously unselected package libhtscodecs2:ppc64el. 130s Preparing to unpack .../16-libhtscodecs2_1.6.0-1_ppc64el.deb ... 130s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 130s Selecting previously unselected package libhts3t64:ppc64el. 130s Preparing to unpack .../17-libhts3t64_1.19+ds-1.1build3_ppc64el.deb ... 130s Unpacking libhts3t64:ppc64el (1.19+ds-1.1build3) ... 130s Selecting previously unselected package x11-common. 130s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu3_all.deb ... 130s Unpacking x11-common (1:7.7+23ubuntu3) ... 130s Selecting previously unselected package libice6:ppc64el. 130s Preparing to unpack .../19-libice6_2%3a1.0.10-1build3_ppc64el.deb ... 130s Unpacking libice6:ppc64el (2:1.0.10-1build3) ... 130s Selecting previously unselected package liblapack3:ppc64el. 130s Preparing to unpack .../20-liblapack3_3.12.0-3build1_ppc64el.deb ... 130s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 130s Selecting previously unselected package libthai-data. 130s Preparing to unpack .../21-libthai-data_0.1.29-2build1_all.deb ... 130s Unpacking libthai-data (0.1.29-2build1) ... 130s Selecting previously unselected package libthai0:ppc64el. 130s Preparing to unpack .../22-libthai0_0.1.29-2build1_ppc64el.deb ... 130s Unpacking libthai0:ppc64el (0.1.29-2build1) ... 130s Selecting previously unselected package libpango-1.0-0:ppc64el. 130s Preparing to unpack .../23-libpango-1.0-0_1.52.1+ds-1build1_ppc64el.deb ... 130s Unpacking libpango-1.0-0:ppc64el (1.52.1+ds-1build1) ... 130s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 130s Preparing to unpack .../24-libpangoft2-1.0-0_1.52.1+ds-1build1_ppc64el.deb ... 130s Unpacking libpangoft2-1.0-0:ppc64el (1.52.1+ds-1build1) ... 130s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 130s Preparing to unpack .../25-libpangocairo-1.0-0_1.52.1+ds-1build1_ppc64el.deb ... 130s Unpacking libpangocairo-1.0-0:ppc64el (1.52.1+ds-1build1) ... 130s Selecting previously unselected package libpaper1:ppc64el. 130s Preparing to unpack .../26-libpaper1_1.1.29build1_ppc64el.deb ... 130s Unpacking libpaper1:ppc64el (1.1.29build1) ... 130s Selecting previously unselected package libpaper-utils. 130s Preparing to unpack .../27-libpaper-utils_1.1.29build1_ppc64el.deb ... 130s Unpacking libpaper-utils (1.1.29build1) ... 130s Selecting previously unselected package libsm6:ppc64el. 130s Preparing to unpack .../28-libsm6_2%3a1.2.3-1build3_ppc64el.deb ... 130s Unpacking libsm6:ppc64el (2:1.2.3-1build3) ... 130s Selecting previously unselected package libtcl8.6:ppc64el. 130s Preparing to unpack .../29-libtcl8.6_8.6.14+dfsg-1build1_ppc64el.deb ... 130s Unpacking libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 130s Selecting previously unselected package libxft2:ppc64el. 130s Preparing to unpack .../30-libxft2_2.3.6-1build1_ppc64el.deb ... 130s Unpacking libxft2:ppc64el (2.3.6-1build1) ... 131s Selecting previously unselected package libxss1:ppc64el. 131s Preparing to unpack .../31-libxss1_1%3a1.2.3-1build3_ppc64el.deb ... 131s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ... 131s Selecting previously unselected package 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libpixman-1-0:ppc64el (0.42.2-1build1) ... 131s Setting up libpaper1:ppc64el (1.1.29build1) ... 131s 131s Creating config file /etc/papersize with new version 132s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 134s Regenerating fonts cache... done. 134s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ... 134s Setting up libdatrie1:ppc64el (0.2.13-3build1) ... 134s Setting up libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ... 134s Setting up libxcb-render0:ppc64el (1.15-1) ... 134s Setting up unzip (6.0-28ubuntu4) ... 134s Setting up x11-common (1:7.7+23ubuntu3) ... 134s Setting up libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ... 134s Setting up libxcb-shm0:ppc64el (1.15-1) ... 134s Setting up libpaper-utils (1.1.29build1) ... 134s Setting up libgomp1:ppc64el (14-20240412-0ubuntu1) ... 134s Setting up libcairo2:ppc64el (1.18.0-3build1) ... 134s Setting up zip (3.0-13build1) ... 134s Setting up libblas3:ppc64el (3.12.0-3build1) ... 134s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 134s Setting up libboost-iostreams1.83.0:ppc64el (1.83.0-2.1ubuntu3) ... 134s Setting up libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ... 134s Setting up libgfortran5:ppc64el (14-20240412-0ubuntu1) ... 134s Setting up r-mathlib (4.3.3-2build2) ... 134s Setting up libhts3t64:ppc64el (1.19+ds-1.1build3) ... 134s Setting up libharfbuzz0b:ppc64el (8.3.0-2build2) ... 134s Setting up libthai-data (0.1.29-2build1) ... 134s Setting up libxss1:ppc64el (1:1.2.3-1build3) ... 134s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 134s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 134s Setting up libice6:ppc64el (2:1.0.10-1build3) ... 134s Setting up liblapack3:ppc64el (3.12.0-3build1) ... 134s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 134s Setting up libxft2:ppc64el (2.3.6-1build1) ... 134s Setting up libtk8.6:ppc64el (8.6.14-1build1) ... 134s Setting up libthai0:ppc64el (0.1.29-2build1) ... 134s Setting up libsm6:ppc64el (2:1.2.3-1build3) ... 134s Setting up libpango-1.0-0:ppc64el (1.52.1+ds-1build1) ... 134s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ... 134s Setting up libpangoft2-1.0-0:ppc64el (1.52.1+ds-1build1) ... 134s Setting up libpangocairo-1.0-0:ppc64el (1.52.1+ds-1build1) ... 134s Setting up r-base-core (4.3.3-2build2) ... 134s 134s Creating config file /etc/R/Renviron with new version 134s Setting up qtltools (1.3.1+dfsg-4build3) ... 134s Setting up autopkgtest-satdep (0) ... 134s Processing triggers for man-db (2.12.0-4build1) ... 135s Processing triggers for install-info (7.1-3build2) ... 135s Processing triggers for libc-bin (2.39-0ubuntu8) ... 138s (Reading database ... 73905 files and directories currently installed.) 138s Removing autopkgtest-satdep (0) ... 139s autopkgtest [23:55:42]: test run-sample-analysis: [----------------------- 139s ./genes.50percent.chr22.bed.gz 139s ./genes.50percent.chr22.bed.gz.tbi 139s ./genes.covariates.pc50.txt.gz 139s ./genes.simulated.chr22.bed.gz 139s ./genes.simulated.chr22.bed.gz.tbi 139s ./genotypes.chr22.vcf.gz 140s ./genotypes.chr22.vcf.gz.tbi 140s 140s QTLtools 140s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 140s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 140s * Webpage : https://qtltools.github.io/qtltools/ 140s * Version : 1.3.1 140s * Date : 18/04/2024 - 23:55:43 140s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 140s 140s CONDUCT PCA ON DATA 140s 140s Initialize random number generator 140s * Built-in seed is 15112011 140s * First Integer = 30553 140s * First Double = 0.0126695 140s 140s Reading sample list from [genes.50percent.chr22.bed.gz] 140s * #samples = 358 140s 140s Merging sample sets from all input files 140s * #files = 1 140s * #samples in all files = 358 140s 140s Reading phenotype data in [genes.50percent.chr22.bed.gz] 140s * 358 samples included 140s * 608 phenotypes included 140s 140s Calculating PCA with a matrix 358 x 608 140s * Calculated mean and sd 140s * 0 sd==0 columns removed 140s * Variables centered 140s * Variables scaled to unit variance 140s * Running SVD 140s * SVD complete 140s * Calculated sd and var for PCs 140s * Calculated cumulative var for PCs 140s * Done! 140s 140s Running time: 0 seconds 140s 140s QTLtools 140s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 140s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 140s * Webpage : https://qtltools.github.io/qtltools/ 140s * Version : 1.3.1 140s * Date : 18/04/2024 - 23:55:43 140s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 140s 140s MAPPING QTL IN CIS 140s * TASK: Report all nominal associations with p <= 0.01 140s * Linear model: Phe ~ Var + Cov 140s * Cis-window size is 1000000 bp 140s * Region = [chr22:17000000-18000000] 140s 140s Initialize random number generator 140s * Built-in seed is 15112011 140s * First Integer = 30553 140s * First Double = 0.0126695 140s 140s Reading sample list from [genes.50percent.chr22.bed.gz] 140s * #samples = 358 140s 140s Read sample list from [genotypes.chr22.vcf.gz] 140s * #samples = 358 140s 140s Reading sample list from [genes.covariates.pc50.txt.gz] 140s * #samples = 358 140s 140s Merging sample sets from all input files 140s * #files = 3 140s * #samples in all files = 358 140s 140s Reading phenotype data in [genes.50percent.chr22.bed.gz] 140s * target region [chr22:17000000-18000000] 140s * 8 phenotypes included 140s * 3 phenotypes are on the negative strand 140s 140s Reading genotype data in [genotypes.chr22.vcf.gz] 140s * File format detected: VCF 140s * target region [chr22:16000000-19000000] 141s * 6404 variants included 141s 141s Reading covariates in [genes.covariates.pc50.txt.gz] 141s * 53 covariates included 141s 141s Residualize phenotypes for covariates 141s * #covariates = 53 141s 141s Processing phenotype [ENSG00000237438.2] [1/8] 141s * #variants in cis = 5095 141s * Best hit: [id=22_17542810, d=25350, pv=1.1864e-25, s=-0.7518] 141s 141s Processing phenotype [ENSG00000273203.1] [2/8] 141s * #variants in cis = 5170 141s * Best hit: [id=22_17517388, d=-31323, pv=5.86611e-06, s=-0.1406] 141s 141s Processing phenotype [ENSG00000273442.1] [3/8] 141s * #variants in cis = 5188 141s * Best hit: [id=22_17553526, d=-8065, pv=0.000244522, s=0.1340] 141s 141s Processing phenotype [ENSG00000177663.9] [4/8] 141s * #variants in cis = 5193 141s * Best hit: [id=22_17513703, d=-52141, pv=8.03358e-14, s=-0.2096] 141s 141s Processing phenotype [ENSG00000183307.3] [5/8] 141s * #variants in cis = 5230 141s * Best hit: [id=22_17587975, d=14282, pv=1.56789e-07, s=-0.0078] 141s 141s Processing phenotype [ENSG00000069998.8] [6/8] 141s * #variants in cis = 5291 141s * Best hit: [id=22_17620429, d=25748, pv=1.37287e-14, s=-1.5147] 141s 141s Processing phenotype [ENSG00000093072.11] [7/8] 141s * #variants in cis = 5293 141s * Best hit: [id=22_17699630, d=3249, pv=0.000578649, s=0.6404] 141s 141s Processing phenotype [ENSG00000099954.14] [8/8] 141s * #variants in cis = 5435 141s * Best hit: [id=22_17175937, d=-664900, pv=0.000866455, s=0.0067] 141s 141s Running time: 0 seconds 141s 141s QTLtools 141s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 141s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 141s * Webpage : https://qtltools.github.io/qtltools/ 141s * Version : 1.3.1 141s * Date : 18/04/2024 - 23:55:44 141s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 141s 141s MAPPING QTL IN CIS 141s * TASK: Perform 1000 permutations 141s * Linear model: Phe ~ Var + Cov 141s * Cis-window size is 1000000 bp 141s * Region = [chr22:17000000-18000000] 141s 141s Initialize random number generator 141s * Built-in seed is 15112011 141s * First Integer = 30553 141s * First Double = 0.0126695 141s 141s Reading sample list from [genes.50percent.chr22.bed.gz] 141s * #samples = 358 141s 141s Read sample list from [genotypes.chr22.vcf.gz] 141s * #samples = 358 141s 141s Reading sample list from [genes.covariates.pc50.txt.gz] 141s * #samples = 358 141s 141s Merging sample sets from all input files 141s * #files = 3 141s * #samples in all files = 358 141s 141s Reading phenotype data in [genes.50percent.chr22.bed.gz] 141s * target region [chr22:17000000-18000000] 141s * 8 phenotypes included 141s * 3 phenotypes are on the negative strand 141s 141s Reading genotype data in [genotypes.chr22.vcf.gz] 141s * File format detected: VCF 141s * target region [chr22:16000000-19000000] 141s * 6404 variants included 141s 141s Reading covariates in [genes.covariates.pc50.txt.gz] 141s * 53 covariates included 141s 141s Residualize phenotypes for covariates 141s * #covariates = 53 141s 141s Processing phenotype [ENSG00000237438.2] [1/8] 141s * #variants in cis = 5095 142s * Best hit: [id=22_17542810, d=25350, pv=1.1864e-25, s=-0.7518] 142s * Beta parameters: [s1=1.00995, s2=621.053] 142s * Adjusted p-values: [emp=0.000999001, beta=1.28062e-20] 142s 142s Processing phenotype [ENSG00000273203.1] [2/8] 142s * #variants in cis = 5170 143s * Best hit: [id=22_17517388, d=-31323, pv=5.86611e-06, s=-0.1406] 143s * Beta parameters: [s1=1.11817, s2=641.379] 143s * Adjusted p-values: [emp=0.00799201, beta=0.00751892] 143s 143s Processing phenotype [ENSG00000273442.1] [3/8] 143s * #variants in cis = 5188 144s * Best hit: [id=22_17553526, d=-8065, pv=0.000244522, s=0.1340] 144s * Beta parameters: [s1=1.08364, s2=467.63] 144s * Adjusted p-values: [emp=0.297702, beta=0.293948] 144s 144s Processing phenotype [ENSG00000177663.9] [4/8] 144s * #variants in cis = 5193 145s * Best hit: [id=22_17513703, d=-52141, pv=8.03358e-14, s=-0.2096] 145s * Beta parameters: [s1=0.989061, s2=704.553] 145s * Adjusted p-values: [emp=0.000999001, beta=7.91291e-10] 145s 145s Processing phenotype [ENSG00000183307.3] [5/8] 145s * #variants in cis = 5230 147s * Best hit: [id=22_17587975, d=14282, pv=1.56789e-07, s=-0.0078] 147s * Beta parameters: [s1=1.01322, s2=559.49] 147s * Adjusted p-values: [emp=0.000999001, beta=0.00050707] 147s 147s Processing phenotype [ENSG00000069998.8] [6/8] 147s * #variants in cis = 5291 148s * Best hit: [id=22_17620429, d=25748, pv=1.37287e-14, s=-1.5147] 148s * Beta parameters: [s1=1.02312, s2=563.339] 148s * Adjusted p-values: [emp=0.000999001, beta=2.56935e-10] 148s 148s Processing phenotype [ENSG00000093072.11] [7/8] 148s * #variants in cis = 5293 149s * Best hit: [id=22_17699630, d=3249, pv=0.000578649, s=0.6404] 149s * Beta parameters: [s1=0.957514, s2=559.397] 149s * Adjusted p-values: [emp=0.574426, beta=0.562826] 149s 149s Processing phenotype [ENSG00000099954.14] [8/8] 149s * #variants in cis = 5435 150s * Best hit: [id=22_17175937, d=-664900, pv=0.000866455, s=0.0067] 150s * Beta parameters: [s1=0.938041, s2=226.852] 150s * Adjusted p-values: [emp=0.842158, beta=0.84836] 150s 150s Running time: 9 seconds 150s 150s QTLtools 150s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 150s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 150s * Webpage : https://qtltools.github.io/qtltools/ 150s * Version : 1.3.1 150s * Date : 18/04/2024 - 23:55:53 150s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 150s 150s MAPPING QTL IN TRANS 150s * TASK: Perform a full nominal pass, do not adjust p-values 150s * Cis-window size is 5000000 bp 150s * #bins = 1000 150s * threshold = 1e-05 150s 150s Initialize random number generator 150s * Built-in seed is 15112011 150s * First Integer = 30553 150s * First Double = 0.0126695 150s 150s Read sample list from [genotypes.chr22.vcf.gz] 150s * #samples = 358 150s 150s Checking sample list in [genes.simulated.chr22.bed.gz] 150s * #samples = 358 150s 150s Reading phenotype data in [genes.simulated.chr22.bed.gz] from line 0 to 0 150s * 358 samples included 150s * 608 phenotypes included 150s * 275 phenotypes is on the negative strand 150s 150s Calculate correlation threshold 150s * thres = 1e-05 150s * corr = 0.2311 150s 150s Sweep through genotype data in [genotypes.chr22.vcf.gz] 150s * #variants=1950 #multi_allelic=0 #not_processed=0 #hits=101/1000000 speed=3.89MT/s 151s * #variants=4001 #multi_allelic=0 #not_processed=0 #hits=153/2000000 speed=3.86MT/s 151s * #variants=6187 #multi_allelic=0 #not_processed=0 #hits=244/3000000 speed=3.83MT/s 151s * #variants=8537 #multi_allelic=0 #not_processed=0 #hits=285/4000000 speed=3.77MT/s 151s * #variants=11025 #multi_allelic=0 #not_processed=0 #hits=312/5000000 speed=3.75MT/s 152s * #variants=13621 #multi_allelic=0 #not_processed=0 #hits=320/6000000 speed=3.68MT/s 152s * #variants=16217 #multi_allelic=0 #not_processed=0 #hits=342/7000000 speed=3.70MT/s 152s * #variants=18755 #multi_allelic=0 #not_processed=0 #hits=401/8000000 speed=3.70MT/s 153s * #variants=21237 #multi_allelic=0 #not_processed=0 #hits=402/9000000 speed=3.73MT/s 153s * #variants=23680 #multi_allelic=0 #not_processed=0 #hits=455/10000000 speed=3.72MT/s 153s * #variants=26171 #multi_allelic=0 #not_processed=0 #hits=463/11000000 speed=3.70MT/s 153s * #variants=28609 #multi_allelic=0 #not_processed=0 #hits=469/12000000 speed=3.70MT/s 154s * #variants=30861 #multi_allelic=0 #not_processed=0 #hits=973/13000000 speed=3.72MT/s 154s * #variants=32932 #multi_allelic=0 #not_processed=0 #hits=979/14000000 speed=3.85MT/s 154s * #variants=34974 #multi_allelic=0 #not_processed=0 #hits=1085/15000000 speed=3.85MT/s 154s * #variants=37021 #multi_allelic=0 #not_processed=0 #hits=1086/16000000 speed=3.86MT/s 155s * #variants=39122 #multi_allelic=0 #not_processed=0 #hits=1089/17000000 speed=3.85MT/s 155s * #variants=41334 #multi_allelic=0 #not_processed=0 #hits=1089/18000000 speed=3.82MT/s 155s * #variants=43627 #multi_allelic=0 #not_processed=0 #hits=1096/19000000 speed=3.77MT/s 155s * #variants=45897 #multi_allelic=0 #not_processed=0 #hits=1153/20000000 speed=3.79MT/s 156s * #variants=48114 #multi_allelic=0 #not_processed=0 #hits=1243/21000000 speed=3.80MT/s 156s * #variants=50410 #multi_allelic=0 #not_processed=0 #hits=1249/22000000 speed=3.77MT/s 156s * #variants=52820 #multi_allelic=0 #not_processed=0 #hits=1259/23000000 speed=3.75MT/s 157s * #variants=55279 #multi_allelic=0 #not_processed=0 #hits=1498/24000000 speed=3.72MT/s 157s * #variants=57789 #multi_allelic=0 #not_processed=0 #hits=1724/25000000 speed=3.70MT/s 157s * #variants=60201 #multi_allelic=0 #not_processed=0 #hits=2168/26000000 speed=3.70MT/s 157s * #variants=62476 #multi_allelic=0 #not_processed=0 #hits=2452/27000000 speed=3.79MT/s 158s * #variants=64608 #multi_allelic=0 #not_processed=0 #hits=2544/28000000 speed=3.83MT/s 158s * #variants=66709 #multi_allelic=0 #not_processed=0 #hits=2684/29000000 speed=3.83MT/s 158s * #variants=68871 #multi_allelic=0 #not_processed=0 #hits=2688/30000000 speed=3.83MT/s 158s * #variants=71070 #multi_allelic=0 #not_processed=0 #hits=2720/31000000 speed=3.79MT/s 159s * #variants=73151 #multi_allelic=0 #not_processed=0 #hits=2891/32000000 speed=3.50MT/s 159s * #variants=75122 #multi_allelic=0 #not_processed=0 #hits=3110/33000000 speed=3.42MT/s 159s * #variants=77058 #multi_allelic=0 #not_processed=0 #hits=3209/34000000 speed=3.52MT/s 160s * #variants=78989 #multi_allelic=0 #not_processed=0 #hits=3218/35000000 speed=3.44MT/s 160s * #variants=80903 #multi_allelic=0 #not_processed=0 #hits=3250/36000000 speed=3.76MT/s 160s * #variants=82811 #multi_allelic=0 #not_processed=0 #hits=3463/37000000 speed=3.85MT/s 160s * #variants=84694 #multi_allelic=0 #not_processed=0 #hits=4035/38000000 speed=3.83MT/s 160s * #variants=85485 #multi_allelic=0 #not_processed=0 #hits=4036/38425275 speed=3.90MT/s 160s 160s Running time: 10 seconds 160s 160s QTLtools 160s * Authors : Olivier DELANEAU / Halit ONGEN / Emmanouil DERMITZAKIS 160s * Contact : olivier.delaneau@gmail.com / halit.ongen@unige.ch / Emmanouil.Dermitzakis@unige.ch 160s * Webpage : https://qtltools.github.io/qtltools/ 160s * Version : 1.3.1 160s * Date : 18/04/2024 - 23:56:03 160s * Citation: A complete tool set for molecular QTL discovery and analysis, https://doi.org/10.1038/ncomms15452 160s 160s MAPPING QTL IN TRANS 160s * TASK: Permute randomly chosen phenotypes 1000 times and test 160s * Cis-window size is 5000000 bp 160s * #bins = 1000 160s * threshold = 1e-05 160s 160s Initialize random number generator 160s * Built-in seed is 15112011 160s * First Integer = 30553 160s * First Double = 0.0126695 160s 160s Read sample list from [genotypes.chr22.vcf.gz] 160s * #samples = 358 160s 160s Checking sample list in [genes.simulated.chr22.bed.gz] 160s * #samples = 358 160s 160s Reading phenotype data in [genes.simulated.chr22.bed.gz] from line 0 to 0 160s * 358 samples included 161s * 608 phenotypes included 161s * 275 phenotypes is on the negative strand 161s 161s Normal transform phenotypes 161s 161s Calculate correlation threshold 161s * thres = 1e-05 161s * corr = 0.2311 161s 161s Sweep through genotype data in [genotypes.chr22.vcf.gz] 161s * #variants=1177 #multi_allelic=0 #not_processed=0 #hits=28/1000000 speed=4.00MT/s 161s * #variants=2383 #multi_allelic=0 #not_processed=0 #hits=38/2000000 speed=3.97MT/s 161s * #variants=3633 #multi_allelic=0 #not_processed=0 #hits=53/3000000 speed=3.94MT/s 162s * #variants=4928 #multi_allelic=0 #not_processed=0 #hits=53/4000000 speed=3.92MT/s 162s * #variants=6269 #multi_allelic=0 #not_processed=0 #hits=71/5000000 speed=3.88MT/s 162s * #variants=7675 #multi_allelic=0 #not_processed=0 #hits=72/6000000 speed=3.80MT/s 162s * #variants=9151 #multi_allelic=0 #not_processed=0 #hits=88/7000000 speed=3.77MT/s 163s * #variants=10663 #multi_allelic=0 #not_processed=0 #hits=96/8000000 speed=3.76MT/s 163s * #variants=12202 #multi_allelic=0 #not_processed=0 #hits=96/9000000 speed=3.73MT/s 163s * #variants=13804 #multi_allelic=0 #not_processed=0 #hits=96/10000000 speed=3.68MT/s 163s * #variants=15381 #multi_allelic=0 #not_processed=0 #hits=120/11000000 speed=3.70MT/s 164s * #variants=16946 #multi_allelic=0 #not_processed=0 #hits=123/12000000 speed=3.72MT/s 164s * #variants=18483 #multi_allelic=0 #not_processed=0 #hits=129/13000000 speed=3.69MT/s 164s * #variants=19995 #multi_allelic=0 #not_processed=0 #hits=131/14000000 speed=3.75MT/s 165s * #variants=21489 #multi_allelic=0 #not_processed=0 #hits=132/15000000 speed=3.75MT/s 165s * #variants=22947 #multi_allelic=0 #not_processed=0 #hits=151/16000000 speed=3.79MT/s 165s * #variants=24445 #multi_allelic=0 #not_processed=0 #hits=168/17000000 speed=3.76MT/s 165s * #variants=25965 #multi_allelic=0 #not_processed=0 #hits=175/18000000 speed=3.75MT/s 166s * #variants=27472 #multi_allelic=0 #not_processed=0 #hits=179/19000000 speed=3.73MT/s 166s * #variants=28933 #multi_allelic=0 #not_processed=0 #hits=181/20000000 speed=3.80MT/s 166s * #variants=30325 #multi_allelic=0 #not_processed=0 #hits=181/21000000 speed=3.83MT/s 166s * #variants=31617 #multi_allelic=0 #not_processed=0 #hits=182/22000000 speed=3.91MT/s 167s * #variants=32875 #multi_allelic=0 #not_processed=0 #hits=190/23000000 speed=3.92MT/s 167s * #variants=34127 #multi_allelic=0 #not_processed=0 #hits=192/24000000 speed=3.94MT/s 167s * #variants=35392 #multi_allelic=0 #not_processed=0 #hits=206/25000000 speed=3.89MT/s 167s * #variants=36652 #multi_allelic=0 #not_processed=0 #hits=206/26000000 speed=3.88MT/s 168s * #variants=37940 #multi_allelic=0 #not_processed=0 #hits=213/27000000 speed=3.89MT/s 168s * #variants=39255 #multi_allelic=0 #not_processed=0 #hits=238/28000000 speed=3.88MT/s 168s * #variants=40602 #multi_allelic=0 #not_processed=0 #hits=239/29000000 speed=3.85MT/s 168s * #variants=41998 #multi_allelic=0 #not_processed=0 #hits=245/30000000 speed=3.76MT/s 169s * #variants=43398 #multi_allelic=0 #not_processed=0 #hits=245/31000000 speed=3.82MT/s 169s * #variants=44803 #multi_allelic=0 #not_processed=0 #hits=260/32000000 speed=3.75MT/s 169s * #variants=46187 #multi_allelic=0 #not_processed=0 #hits=261/33000000 speed=3.86MT/s 169s * #variants=47545 #multi_allelic=0 #not_processed=0 #hits=268/34000000 speed=3.86MT/s 170s * #variants=48904 #multi_allelic=0 #not_processed=0 #hits=280/35000000 speed=3.88MT/s 170s * #variants=50309 #multi_allelic=0 #not_processed=0 #hits=306/36000000 speed=3.83MT/s 170s * #variants=51731 #multi_allelic=0 #not_processed=0 #hits=314/37000000 speed=3.80MT/s 171s * #variants=53171 #multi_allelic=0 #not_processed=0 #hits=320/38000000 speed=3.82MT/s 171s * #variants=54621 #multi_allelic=0 #not_processed=0 #hits=323/39000000 speed=3.82MT/s 171s * #variants=56099 #multi_allelic=0 #not_processed=0 #hits=323/40000000 speed=3.80MT/s 171s * #variants=57584 #multi_allelic=0 #not_processed=0 #hits=340/41000000 speed=3.77MT/s 172s * #variants=59032 #multi_allelic=0 #not_processed=0 #hits=344/42000000 speed=3.82MT/s 172s * #variants=60437 #multi_allelic=0 #not_processed=0 #hits=345/43000000 speed=3.83MT/s 172s * #variants=61810 #multi_allelic=0 #not_processed=0 #hits=357/44000000 speed=3.86MT/s 172s * #variants=63129 #multi_allelic=0 #not_processed=0 #hits=384/45000000 speed=3.89MT/s 173s * #variants=64409 #multi_allelic=0 #not_processed=0 #hits=391/46000000 speed=3.94MT/s 173s * #variants=65679 #multi_allelic=0 #not_processed=0 #hits=430/47000000 speed=3.94MT/s 173s * #variants=66953 #multi_allelic=0 #not_processed=0 #hits=436/48000000 speed=3.91MT/s 173s * #variants=68247 #multi_allelic=0 #not_processed=0 #hits=446/49000000 speed=3.92MT/s 174s * #variants=69595 #multi_allelic=0 #not_processed=0 #hits=460/50000000 speed=3.89MT/s 174s * #variants=70918 #multi_allelic=0 #not_processed=0 #hits=481/51000000 speed=3.89MT/s 174s * #variants=72211 #multi_allelic=0 #not_processed=0 #hits=492/52000000 speed=3.92MT/s 174s * #variants=73449 #multi_allelic=0 #not_processed=0 #hits=492/53000000 speed=3.98MT/s 175s * #variants=74662 #multi_allelic=0 #not_processed=0 #hits=500/54000000 speed=3.98MT/s 175s * #variants=75863 #multi_allelic=0 #not_processed=0 #hits=506/55000000 speed=4.00MT/s 175s * #variants=77058 #multi_allelic=0 #not_processed=0 #hits=513/56000000 speed=4.00MT/s 175s * #variants=78253 #multi_allelic=0 #not_processed=0 #hits=515/57000000 speed=4.00MT/s 176s * #variants=79446 #multi_allelic=0 #not_processed=0 #hits=530/58000000 speed=3.98MT/s 176s * #variants=80634 #multi_allelic=0 #not_processed=0 #hits=581/59000000 speed=4.00MT/s 176s * #variants=81817 #multi_allelic=0 #not_processed=0 #hits=594/60000000 speed=4.00MT/s 176s * #variants=82993 #multi_allelic=0 #not_processed=0 #hits=598/61000000 speed=4.02MT/s 177s * #variants=84160 #multi_allelic=0 #not_processed=0 #hits=599/62000000 speed=4.02MT/s 177s * #variants=85304 #multi_allelic=0 #not_processed=0 #hits=609/63000000 speed=4.02MT/s 177s * #variants=85485 #multi_allelic=0 #not_processed=0 #hits=609/63157827 speed=4.15MT/s 177s 177s Running time: 16 seconds 177s autopkgtest [23:56:20]: test run-sample-analysis: -----------------------] 178s autopkgtest [23:56:21]: test run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 178s run-sample-analysis PASS 178s autopkgtest [23:56:21]: @@@@@@@@@@@@@@@@@@@@ summary 178s run-sample-analysis PASS 189s Creating nova instance adt-noble-ppc64el-qtltools-20240418-235323-juju-7f2275-prod-proposed-migration-environment-2-731987da-023c-410f-ad4c-8a1db119806e from image adt/ubuntu-noble-ppc64el-server-20240418.img (UUID eb57e9e5-70fe-4878-ae85-dd88e864cb24)...