0s autopkgtest [08:25:17]: starting date and time: 2024-03-23 08:25:17+0000 0s autopkgtest [08:25:17]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [08:25:17]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0cn2mxaq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-7.secgroup --name adt-noble-ppc64el-python-skbio-20240323-082517-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 97s autopkgtest [08:26:54]: testbed dpkg architecture: ppc64el 97s autopkgtest [08:26:54]: testbed apt version: 2.7.12 97s autopkgtest [08:26:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 98s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 99s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 99s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 99s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4030 kB] 99s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 99s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 99s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 99s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 99s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 99s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4251 kB] 100s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 100s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 100s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 103s Fetched 9688 kB in 2s (3911 kB/s) 103s Reading package lists... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade... 106s The following packages will be upgraded: 106s libbsd0 libc-bin libc6 locales 106s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 8313 kB of archives. 106s After this operation, 2048 B of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6 ppc64el 2.39-0ubuntu6 [3274 kB] 107s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-bin ppc64el 2.39-0ubuntu6 [751 kB] 107s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libbsd0 ppc64el 0.12.1-1 [56.9 kB] 107s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el locales all 2.39-0ubuntu6 [4232 kB] 107s Preconfiguring packages ... 107s Fetched 8313 kB in 1s (7975 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 108s Preparing to unpack .../libc6_2.39-0ubuntu6_ppc64el.deb ... 108s Unpacking libc6:ppc64el (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 108s Setting up libc6:ppc64el (2.39-0ubuntu6) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 109s Preparing to unpack .../libc-bin_2.39-0ubuntu6_ppc64el.deb ... 109s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 109s Setting up libc-bin (2.39-0ubuntu6) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 109s Preparing to unpack .../libbsd0_0.12.1-1_ppc64el.deb ... 109s Unpacking libbsd0:ppc64el (0.12.1-1) over (0.11.8-1) ... 109s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 109s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 109s Setting up locales (2.39-0ubuntu6) ... 109s Generating locales (this might take a while)... 111s en_US.UTF-8... done 111s Generation complete. 111s Setting up libbsd0:ppc64el (0.12.1-1) ... 111s Processing triggers for man-db (2.12.0-3) ... 112s Processing triggers for libc-bin (2.39-0ubuntu6) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s sh: Attempting to set up Debian/Ubuntu apt sources automatically 113s sh: Distribution appears to be Ubuntu 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s eatmydata is already the newest version (131-1). 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s dbus is already the newest version (1.14.10-4ubuntu1). 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s rng-tools-debian is already the newest version (2.4). 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s The following packages will be REMOVED: 115s cloud-init* python3-configobj* python3-debconf* 115s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 115s After this operation, 3256 kB disk space will be freed. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 115s Removing cloud-init (24.1.2-0ubuntu1) ... 116s Removing python3-configobj (5.0.8-3) ... 116s Removing python3-debconf (1.5.86) ... 116s Processing triggers for man-db (2.12.0-3) ... 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69767 files and directories currently installed.) 116s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 117s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 117s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 117s invoke-rc.d: policy-rc.d denied execution of try-restart. 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s linux-generic is already the newest version (6.8.0-11.11+1). 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 118s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 118s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 120s Reading package lists... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s autopkgtest [08:27:18]: rebooting testbed after setup commands that affected boot 290s autopkgtest [08:30:07]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 293s autopkgtest [08:30:10]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 295s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-skbio 0.5.9-4 (dsc) [2804 B] 295s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-skbio 0.5.9-4 (tar) [3559 kB] 295s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-skbio 0.5.9-4 (diff) [15.7 kB] 296s gpgv: Signature made Sun Feb 11 20:35:02 2024 UTC 296s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 296s gpgv: issuer "tille@debian.org" 296s gpgv: Can't check signature: No public key 296s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.5.9-4.dsc: no acceptable signature found 296s autopkgtest [08:30:13]: testing package python-skbio version 0.5.9-4 296s autopkgtest [08:30:13]: build not needed 298s autopkgtest [08:30:15]: test import-skbio: preparing testbed 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s Starting pkgProblemResolver with broken count: 0 302s Starting 2 pkgProblemResolver with broken count: 0 302s Done 302s The following additional packages will be installed: 302s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libaec0 302s libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 302s libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libimagequant0 libjbig0 302s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 302s liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 302s libssw0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 302s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 302s python3-appdirs python3-asttokens python3-brotli python3-contourpy 302s python3-cycler python3-dateutil python3-decorator python3-executing 302s python3-fonttools python3-fs python3-h5py python3-h5py-serial 302s python3-hdmedians python3-iniconfig python3-ipython python3-jedi 302s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 302s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 302s python3-packaging python3-pandas python3-pandas-lib python3-parso 302s python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 302s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 302s python3-scipy python3-skbio python3-stack-data python3-sympy python3-tk 302s python3-traitlets python3-ufolib2 python3-unicodedata2 python3-wcwidth 302s tk8.6-blt2.5 unicode-data x11-common 302s Suggested packages: 302s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 302s python-h5py-doc python-ipython-doc python-lxml-doc cm-super-minimal dvipng 302s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 302s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 302s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 302s texlive-latex-extra python-mpmath-doc python3-gmpy2 python-natsort-doc gcc 302s gfortran python3-dev python-pandas-doc python3-statsmodels 302s python-pexpect-doc python-pil-doc python-scipy-doc python-skbio-doc 302s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 302s Recommended packages: 302s javascript-common python3-bs4 python3-cssselect python3-html5lib 302s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 302s python3-tables python3-olefile g++ | c++-compiler isympy-common 302s The following NEW packages will be installed: 302s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 302s fonts-lyx libaec0 libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 302s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libimagequant0 302s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 302s liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 302s libsharpyuv0 libssw0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 302s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 302s python-matplotlib-data python3-appdirs python3-asttokens python3-brotli 302s python3-contourpy python3-cycler python3-dateutil python3-decorator 302s python3-executing python3-fonttools python3-fs python3-h5py 302s python3-h5py-serial python3-hdmedians python3-iniconfig python3-ipython 302s python3-jedi python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 302s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 302s python3-packaging python3-pandas python3-pandas-lib python3-parso 302s python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 302s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 302s python3-scipy python3-skbio python3-stack-data python3-sympy python3-tk 302s python3-traitlets python3-ufolib2 python3-unicodedata2 python3-wcwidth 302s tk8.6-blt2.5 unicode-data x11-common 302s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 302s Need to get 87.4 MB/87.4 MB of archives. 302s After this operation, 449 MB of additional disk space will be used. 302s Get:1 /tmp/autopkgtest.HHNKi8/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 302s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB] 302s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 302s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 303s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 303s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 303s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 303s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB] 303s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 303s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B] 303s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.14-1 [944 kB] 303s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7 [778 kB] 303s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el blt ppc64el 2.5.3+dfsg-7 [4832 B] 303s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-lyx all 2.4.0~RC3-1 [170 kB] 303s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el libaec0 ppc64el 1.1.2-1 [29.9 kB] 303s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 303s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 303s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 303s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 303s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 303s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 303s Get:22 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsz2 ppc64el 1.1.2-1 [5472 B] 303s Get:23 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhdf5-103-1 ppc64el 1.10.10+repack-3ubuntu1 [1375 kB] 303s Get:24 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhdf5-hl-100 ppc64el 1.10.10+repack-3ubuntu1 [69.9 kB] 303s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB] 303s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 303s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 303s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 303s Get:29 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 303s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 303s Get:31 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1 [32.8 kB] 303s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] 303s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 303s Get:34 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 303s Get:35 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6 [220 kB] 303s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB] 303s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 303s Get:38 http://ftpmaster.internal/ubuntu noble/universe ppc64el libssw0 ppc64el 1.1-14 [23.9 kB] 303s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 303s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 303s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 303s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB] 303s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB] 303s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1 [192 kB] 303s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 303s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 303s Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-asttokens all 2.4.1-1 [20.9 kB] 303s Get:48 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-brotli ppc64el 1.1.0-2 [420 kB] 303s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 304s Get:50 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-contourpy ppc64el 1.0.7-1build2 [300 kB] 304s Get:51 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cycler all 0.11.0-2 [8202 B] 304s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB] 304s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 304s Get:54 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-executing all 2.0.1-0.1 [23.3 kB] 304s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-scipy ppc64el 1.11.4-6 [21.4 MB] 304s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 304s Get:57 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mpmath all 1.2.1-3 [421 kB] 304s Get:58 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-sympy all 1.12-7 [3966 kB] 305s Get:59 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fs all 2.4.16-3 [91.1 kB] 305s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-lxml ppc64el 5.1.0-1 [2191 kB] 305s Get:61 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build2 [28.8 kB] 305s Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1 [368 kB] 305s Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 305s Get:64 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fonttools ppc64el 4.46.0-1 [1746 kB] 305s Get:65 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-h5py-serial ppc64el 3.10.0-1ubuntu1 [1635 kB] 305s Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-h5py all 3.10.0-1ubuntu1 [7970 B] 305s Get:67 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-hdmedians ppc64el 0.14.2-5.1 [212 kB] 305s Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 305s Get:69 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-parso all 0.8.3-1 [67.2 kB] 305s Get:70 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-jedi all 0.18.2-1ubuntu1 [692 kB] 305s Get:71 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-traitlets all 5.5.0-2 [85.0 kB] 305s Get:72 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-matplotlib-inline all 0.1.6-2 [8784 B] 305s Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-ptyprocess all 0.7.0-5 [15.1 kB] 305s Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pexpect all 4.9-2 [48.1 kB] 305s Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-wcwidth all 0.2.5+dfsg1-1.1ubuntu1 [22.5 kB] 305s Get:76 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-prompt-toolkit all 3.0.43-1 [256 kB] 305s Get:77 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pure-eval all 0.2.2-1 [11.3 kB] 305s Get:78 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-stack-data all 0.6.3-1 [22.0 kB] 305s Get:79 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ipython all 8.20.0-1 [561 kB] 305s Get:80 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-kiwisolver ppc64el 1.4.4-2 [55.8 kB] 305s Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB] 305s Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB] 305s Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-tk ppc64el 3.11.5-1 [116 kB] 305s Get:84 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pil.imagetk ppc64el 10.2.0-1 [10.1 kB] 305s Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 23.2-1 [40.6 kB] 305s Get:86 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-matplotlib ppc64el 3.6.3-1ubuntu3 [7651 kB] 306s Get:87 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB] 306s Get:88 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB] 306s Get:89 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 306s Get:90 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pluggy all 1.4.0-1 [20.4 kB] 306s Get:91 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pytest all 7.4.4-1 [305 kB] 306s Get:92 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-skbio ppc64el 0.5.9-4 [969 kB] 306s Fetched 87.4 MB in 4s (20.7 MB/s) 306s Selecting previously unselected package libtcl8.6:ppc64el. 307s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69712 files and directories currently installed.) 307s Preparing to unpack .../00-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ... 307s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ... 307s Selecting previously unselected package fonts-dejavu-mono. 307s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 307s Unpacking fonts-dejavu-mono (2.37-8) ... 307s Selecting previously unselected package fonts-dejavu-core. 307s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 307s Unpacking fonts-dejavu-core (2.37-8) ... 307s Selecting previously unselected package fontconfig-config. 307s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 307s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 307s Selecting previously unselected package libfontconfig1:ppc64el. 307s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 307s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 307s Selecting previously unselected package libxrender1:ppc64el. 307s Preparing to unpack .../05-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 307s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 307s Selecting previously unselected package libxft2:ppc64el. 307s Preparing to unpack .../06-libxft2_2.3.6-1_ppc64el.deb ... 307s Unpacking libxft2:ppc64el (2.3.6-1) ... 307s Selecting previously unselected package x11-common. 307s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu2_all.deb ... 307s Unpacking x11-common (1:7.7+23ubuntu2) ... 307s Selecting previously unselected package libxss1:ppc64el. 307s Preparing to unpack .../08-libxss1_1%3a1.2.3-1build2_ppc64el.deb ... 307s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ... 307s Selecting previously unselected package libtk8.6:ppc64el. 307s Preparing to unpack .../09-libtk8.6_8.6.14-1_ppc64el.deb ... 307s Unpacking libtk8.6:ppc64el (8.6.14-1) ... 307s Selecting previously unselected package tk8.6-blt2.5. 307s Preparing to unpack .../10-tk8.6-blt2.5_2.5.3+dfsg-7_ppc64el.deb ... 307s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 307s Selecting previously unselected package blt. 307s Preparing to unpack .../11-blt_2.5.3+dfsg-7_ppc64el.deb ... 307s Unpacking blt (2.5.3+dfsg-7) ... 307s Selecting previously unselected package fonts-lyx. 307s Preparing to unpack .../12-fonts-lyx_2.4.0~RC3-1_all.deb ... 307s Unpacking fonts-lyx (2.4.0~RC3-1) ... 307s Selecting previously unselected package libaec0:ppc64el. 307s Preparing to unpack .../13-libaec0_1.1.2-1_ppc64el.deb ... 307s Unpacking libaec0:ppc64el (1.1.2-1) ... 307s Selecting previously unselected package libblas3:ppc64el. 307s Preparing to unpack .../14-libblas3_3.12.0-3_ppc64el.deb ... 307s Unpacking libblas3:ppc64el (3.12.0-3) ... 307s Selecting previously unselected package libdeflate0:ppc64el. 307s Preparing to unpack .../15-libdeflate0_1.19-1_ppc64el.deb ... 307s Unpacking libdeflate0:ppc64el (1.19-1) ... 307s Selecting previously unselected package libgfortran5:ppc64el. 307s Preparing to unpack .../16-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 307s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 307s Selecting previously unselected package libgomp1:ppc64el. 307s Preparing to unpack .../17-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 307s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 307s Selecting previously unselected package libgraphite2-3:ppc64el. 307s Preparing to unpack .../18-libgraphite2-3_1.3.14-2_ppc64el.deb ... 307s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 307s Selecting previously unselected package libharfbuzz0b:ppc64el. 307s Preparing to unpack .../19-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 307s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 307s Selecting previously unselected package libsz2:ppc64el. 307s Preparing to unpack .../20-libsz2_1.1.2-1_ppc64el.deb ... 307s Unpacking libsz2:ppc64el (1.1.2-1) ... 307s Selecting previously unselected package libhdf5-103-1:ppc64el. 307s Preparing to unpack .../21-libhdf5-103-1_1.10.10+repack-3ubuntu1_ppc64el.deb ... 307s Unpacking libhdf5-103-1:ppc64el (1.10.10+repack-3ubuntu1) ... 307s Selecting previously unselected package libhdf5-hl-100:ppc64el. 307s Preparing to unpack .../22-libhdf5-hl-100_1.10.10+repack-3ubuntu1_ppc64el.deb ... 307s Unpacking libhdf5-hl-100:ppc64el (1.10.10+repack-3ubuntu1) ... 307s Selecting previously unselected package libimagequant0:ppc64el. 307s Preparing to unpack .../23-libimagequant0_2.18.0-1_ppc64el.deb ... 307s Unpacking libimagequant0:ppc64el (2.18.0-1) ... 307s Selecting previously unselected package libjpeg-turbo8:ppc64el. 307s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 307s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 307s Selecting previously unselected package libjpeg8:ppc64el. 307s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 307s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 307s Selecting previously unselected package libjs-jquery. 307s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 307s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 307s Selecting previously unselected package libjs-jquery-ui. 307s Preparing to unpack .../27-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 307s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 307s Selecting previously unselected package liblapack3:ppc64el. 307s Preparing to unpack .../28-liblapack3_3.12.0-3_ppc64el.deb ... 307s Unpacking liblapack3:ppc64el (3.12.0-3) ... 308s Selecting previously unselected package liblbfgsb0:ppc64el. 308s Preparing to unpack .../29-liblbfgsb0_3.0+dfsg.4-1_ppc64el.deb ... 308s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 308s Selecting previously unselected package liblcms2-2:ppc64el. 308s Preparing to unpack .../30-liblcms2-2_2.14-2_ppc64el.deb ... 308s Unpacking liblcms2-2:ppc64el (2.14-2) ... 308s Selecting previously unselected package liblerc4:ppc64el. 308s Preparing to unpack .../31-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 308s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 308s Selecting previously unselected package liblzf1:ppc64el. 308s Preparing to unpack .../32-liblzf1_3.6-4_ppc64el.deb ... 308s Unpacking liblzf1:ppc64el (3.6-4) ... 308s Selecting previously unselected package libqhull-r8.0:ppc64el. 308s Preparing to unpack .../33-libqhull-r8.0_2020.2-6_ppc64el.deb ... 308s Unpacking libqhull-r8.0:ppc64el (2020.2-6) ... 308s Selecting previously unselected package libraqm0:ppc64el. 308s Preparing to unpack .../34-libraqm0_0.10.1-1_ppc64el.deb ... 308s Unpacking libraqm0:ppc64el (0.10.1-1) ... 308s Selecting previously unselected package libsharpyuv0:ppc64el. 308s Preparing to unpack .../35-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 308s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 308s Selecting previously unselected package libssw0:ppc64el. 308s Preparing to unpack .../36-libssw0_1.1-14_ppc64el.deb ... 308s Unpacking libssw0:ppc64el (1.1-14) ... 308s Selecting previously unselected package libjbig0:ppc64el. 308s Preparing to unpack .../37-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 308s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 308s Selecting previously unselected package libwebp7:ppc64el. 308s Preparing to unpack .../38-libwebp7_1.3.2-0.4_ppc64el.deb ... 308s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 308s Selecting previously unselected package libtiff6:ppc64el. 308s Preparing to unpack .../39-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 308s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 308s Selecting previously unselected package libwebpdemux2:ppc64el. 308s Preparing to unpack .../40-libwebpdemux2_1.3.2-0.4_ppc64el.deb ... 308s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ... 308s Selecting previously unselected package libwebpmux3:ppc64el. 308s Preparing to unpack .../41-libwebpmux3_1.3.2-0.4_ppc64el.deb ... 308s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ... 308s Selecting previously unselected package libxslt1.1:ppc64el. 308s Preparing to unpack .../42-libxslt1.1_1.1.39-0exp1_ppc64el.deb ... 308s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1) ... 308s Selecting previously unselected package python-matplotlib-data. 308s Preparing to unpack .../43-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 308s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 308s Selecting previously unselected package python3-appdirs. 308s Preparing to unpack .../44-python3-appdirs_1.4.4-4_all.deb ... 308s Unpacking python3-appdirs (1.4.4-4) ... 308s Selecting previously unselected package python3-asttokens. 308s Preparing to unpack .../45-python3-asttokens_2.4.1-1_all.deb ... 308s Unpacking python3-asttokens (2.4.1-1) ... 308s Selecting previously unselected package python3-brotli. 308s Preparing to unpack .../46-python3-brotli_1.1.0-2_ppc64el.deb ... 308s Unpacking python3-brotli (1.1.0-2) ... 308s Selecting previously unselected package python3-numpy. 308s Preparing to unpack .../47-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 308s Unpacking python3-numpy (1:1.24.2-2) ... 308s Selecting previously unselected package python3-contourpy. 308s Preparing to unpack .../48-python3-contourpy_1.0.7-1build2_ppc64el.deb ... 308s Unpacking python3-contourpy (1.0.7-1build2) ... 308s Selecting previously unselected package python3-cycler. 308s Preparing to unpack .../49-python3-cycler_0.11.0-2_all.deb ... 308s Unpacking python3-cycler (0.11.0-2) ... 308s Selecting previously unselected package python3-dateutil. 308s Preparing to unpack .../50-python3-dateutil_2.8.2-3_all.deb ... 308s Unpacking python3-dateutil (2.8.2-3) ... 308s Selecting previously unselected package python3-decorator. 308s Preparing to unpack .../51-python3-decorator_5.1.1-5_all.deb ... 308s Unpacking python3-decorator (5.1.1-5) ... 308s Selecting previously unselected package python3-executing. 308s Preparing to unpack .../52-python3-executing_2.0.1-0.1_all.deb ... 308s Unpacking python3-executing (2.0.1-0.1) ... 308s Selecting previously unselected package python3-scipy. 308s Preparing to unpack .../53-python3-scipy_1.11.4-6_ppc64el.deb ... 308s Unpacking python3-scipy (1.11.4-6) ... 309s Selecting previously unselected package python3-ufolib2. 309s Preparing to unpack .../54-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 309s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 309s Selecting previously unselected package python3-mpmath. 309s Preparing to unpack .../55-python3-mpmath_1.2.1-3_all.deb ... 309s Unpacking python3-mpmath (1.2.1-3) ... 309s Selecting previously unselected package python3-sympy. 309s Preparing to unpack .../56-python3-sympy_1.12-7_all.deb ... 309s Unpacking python3-sympy (1.12-7) ... 310s Selecting previously unselected package python3-fs. 310s Preparing to unpack .../57-python3-fs_2.4.16-3_all.deb ... 310s Unpacking python3-fs (2.4.16-3) ... 310s Selecting previously unselected package python3-lxml:ppc64el. 310s Preparing to unpack .../58-python3-lxml_5.1.0-1_ppc64el.deb ... 310s Unpacking python3-lxml:ppc64el (5.1.0-1) ... 310s Selecting previously unselected package python3-lz4. 310s Preparing to unpack .../59-python3-lz4_4.0.2+dfsg-1build2_ppc64el.deb ... 310s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 310s Selecting previously unselected package python3-unicodedata2. 310s Preparing to unpack .../60-python3-unicodedata2_15.1.0+ds-1_ppc64el.deb ... 310s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 310s Selecting previously unselected package unicode-data. 310s Preparing to unpack .../61-unicode-data_15.1.0-1_all.deb ... 310s Unpacking unicode-data (15.1.0-1) ... 310s Selecting previously unselected package python3-fonttools. 310s Preparing to unpack .../62-python3-fonttools_4.46.0-1_ppc64el.deb ... 310s Unpacking python3-fonttools (4.46.0-1) ... 310s Selecting previously unselected package python3-h5py-serial. 310s Preparing to unpack .../63-python3-h5py-serial_3.10.0-1ubuntu1_ppc64el.deb ... 310s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 310s Selecting previously unselected package python3-h5py. 310s Preparing to unpack .../64-python3-h5py_3.10.0-1ubuntu1_all.deb ... 310s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 310s Selecting previously unselected package python3-hdmedians. 310s Preparing to unpack .../65-python3-hdmedians_0.14.2-5.1_ppc64el.deb ... 310s Unpacking python3-hdmedians (0.14.2-5.1) ... 310s Selecting previously unselected package python3-iniconfig. 310s Preparing to unpack .../66-python3-iniconfig_1.1.1-2_all.deb ... 310s Unpacking python3-iniconfig (1.1.1-2) ... 310s Selecting previously unselected package python3-parso. 310s Preparing to unpack .../67-python3-parso_0.8.3-1_all.deb ... 310s Unpacking python3-parso (0.8.3-1) ... 310s Selecting previously unselected package python3-jedi. 310s Preparing to unpack .../68-python3-jedi_0.18.2-1ubuntu1_all.deb ... 310s Unpacking python3-jedi (0.18.2-1ubuntu1) ... 311s Selecting previously unselected package python3-traitlets. 311s Preparing to unpack .../69-python3-traitlets_5.5.0-2_all.deb ... 311s Unpacking python3-traitlets (5.5.0-2) ... 311s Selecting previously unselected package python3-matplotlib-inline. 311s Preparing to unpack .../70-python3-matplotlib-inline_0.1.6-2_all.deb ... 311s Unpacking python3-matplotlib-inline (0.1.6-2) ... 311s Selecting previously unselected package python3-ptyprocess. 311s Preparing to unpack .../71-python3-ptyprocess_0.7.0-5_all.deb ... 311s Unpacking python3-ptyprocess (0.7.0-5) ... 311s Selecting previously unselected package python3-pexpect. 311s Preparing to unpack .../72-python3-pexpect_4.9-2_all.deb ... 311s Unpacking python3-pexpect (4.9-2) ... 311s Selecting previously unselected package python3-wcwidth. 311s Preparing to unpack .../73-python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1_all.deb ... 311s Unpacking python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 311s Selecting previously unselected package python3-prompt-toolkit. 311s Preparing to unpack .../74-python3-prompt-toolkit_3.0.43-1_all.deb ... 311s Unpacking python3-prompt-toolkit (3.0.43-1) ... 311s Selecting previously unselected package python3-pure-eval. 311s Preparing to unpack .../75-python3-pure-eval_0.2.2-1_all.deb ... 311s Unpacking python3-pure-eval (0.2.2-1) ... 311s Selecting previously unselected package python3-stack-data. 311s Preparing to unpack .../76-python3-stack-data_0.6.3-1_all.deb ... 311s Unpacking python3-stack-data (0.6.3-1) ... 311s Selecting previously unselected package python3-ipython. 311s Preparing to unpack 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Note that the correlation/,/After permuting host : parasite interactions, we find that the observed/d {} ; 365s + find . -name power.py -exec sed -i /Now, let's use random sampling to estimate the power of our test on/,/Based on this power estimate, as we increase our confidence that we have not/d {} ; 365s + http_proxy=http://127.0.0.1:9 python3 -m pytest --pyargs skbio 369s ============================= test session starts ============================== 369s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 369s rootdir: /tmp/autopkgtest.HHNKi8/autopkgtest_tmp 369s collected 2390 items 369s 369s skbio/alignment/tests/test_pairwise.py ......................... [ 1%] 369s skbio/alignment/tests/test_ssw.py ........................... [ 2%] 369s skbio/alignment/tests/test_tabular_msa.py .............................. [ 3%] 369s ........................................................................ 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[ 93%] 425s skbio/tree/tests/test_nj.py ........... [ 93%] 426s skbio/tree/tests/test_tree.py .......................................... [ 95%] 426s ................................................... [ 97%] 426s skbio/util/tests/test_decorator.py ....................... [ 98%] 426s skbio/util/tests/test_misc.py .................... [ 99%] 426s skbio/util/tests/test_testing.py ............... [100%] 426s 426s =============================== warnings summary =============================== 426s ../../../usr/lib/python3/dist-packages/dateutil/tz/tz.py:37 426s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). 426s EPOCH = datetime.datetime.utcfromtimestamp(0) 426s 426s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 426s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 426s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_kwargs_are_usable 426s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_same_as_using_StripedSmithWaterman_object_DNA 426s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_same_as_using_StripedSmithWaterman_object_Protein 426s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_type_mismatch 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: local_pairwise_align_ssw is deprecated as of scikit-bio version 0.5.8, and will be removed in version 0.6.0. This will be removed or replaced, in favor of more general-purpose performant aligners. Additional details at https://github.com/biocore/scikit-bio/issues/1814 426s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 426s 426s skbio/alignment/tests/test_tabular_msa.py::TestTabularMSAPositionalMetadata::test_constructor_makes_shallow_copy_of_positional_metadata 426s skbio/metadata/tests/test_mixin.py::TestPositionalMetadataMixin::test_constructor_makes_shallow_copy_of_positional_metadata 426s skbio/sequence/tests/test_sequence.py::TestSequencePositionalMetadata::test_constructor_makes_shallow_copy_of_positional_metadata 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/metadata/_testing.py:445: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 426s df['bar'][0].append(42) 426s 426s skbio/alignment/tests/test_tabular_msa.py::TestTabularMSAPositionalMetadata::test_positional_metadata_setter_makes_shallow_copy 426s skbio/metadata/tests/test_mixin.py::TestPositionalMetadataMixin::test_positional_metadata_setter_makes_shallow_copy 426s skbio/sequence/tests/test_sequence.py::TestSequencePositionalMetadata::test_positional_metadata_setter_makes_shallow_copy 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/metadata/_testing.py:823: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 426s df['bar'][0].append(42) 426s 426s skbio/alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/alignment/_tabular_msa.py:1653: RuntimeWarning: invalid value encountered in divide 426s gap_freqs /= length 426s 426s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/diversity/alpha/_base.py:811: RuntimeWarning: invalid value encountered in scalar divide 426s return shannon(counts, base=np.e) / np.log(observed_otus(counts)) 426s 426s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/diversity/alpha/_base.py:887: RuntimeWarning: invalid value encountered in divide 426s freqs = counts / counts.sum() 426s 426s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/diversity/alpha/_base.py:811: RuntimeWarning: divide by zero encountered in log 426s return shannon(counts, base=np.e) / np.log(observed_otus(counts)) 426s 426s skbio/diversity/tests/test_block.py: 3 warnings 426s skbio/diversity/tests/test_driver.py: 9 warnings 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: partial_beta_diversity is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 426s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 426s 426s skbio/diversity/tests/test_util.py::ValidationTests::test_validate_counts_vector_invalid_input 426s /usr/lib/python3/dist-packages/numpy/lib/type_check.py:300: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison 426s return imag(x) == 0 426s 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: has_nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to has_definites 426s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 426s 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 426s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 426s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 426s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 426s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 426s skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 426s skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerate_chars is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definite_chars 426s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 426s 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 426s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definites 426s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 426s 426s skbio/sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/sequence/_sequence.py:1820: RuntimeWarning: invalid value encountered in divide 426s obs_counts = obs_counts / len(self) 426s 426s skbio/stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/distance/_mantel.py:354: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 426s warnings.warn(ConstantInputWarning()) 426s 426s skbio/stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/distance/_mantel.py:473: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 426s warnings.warn(ConstantInputWarning()) 426s 426s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 426s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269617 and the largest is 16.587201374785895. 426s warn( 426s 426s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 426s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 426s warn( 426s 426s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:188: RuntimeWarning: invalid value encountered in divide 426s proportion_explained = eigvals / sum_eigenvalues 426s 426s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 426s skbio/stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 426s /usr/lib/python3/dist-packages/scipy/stats/_stats_py.py:4167: ConstantInputWarning: Each of the input arrays is constant;the F statistic is not defined or infinite 426s warnings.warn(stats.ConstantInputWarning(msg)) 426s 426s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 426s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.00775832514778062 and the largest is 2.7077929489469246. 426s warn( 426s 426s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_no_metadata 426s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_categorical_metadata_and_plot_options 426s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_numeric_metadata_and_plot_options 426s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_png 426s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_repr_png 426s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_repr_svg 426s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_svg 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/ordination/_ordination_results.py:285: UserWarning: Tight layout not applied. The left and right margins cannot be made large enough to accommodate all axes decorations. 426s fig.tight_layout() 426s 426s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_categorical_metadata_and_plot_options 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/ordination/_ordination_results.py:263: UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored 426s plot = scatter_fn(c=point_colors, cmap=cmap) 426s 426s skbio/stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 426s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 426s return self.run(*args, **kwds) 426s 426s skbio/stats/ordination/tests/test_redundancy_analysis.py::TestRDAResults_biplot_score::test_biplot_score 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/ordination/tests/test_redundancy_analysis.py:248: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 426s scaling = (rda_.eigvals[0] / rda_.eigvals[:6]) 426s 426s skbio/stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 426s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:523: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 426s res = hypotest_fun_out(*samples, **kwds) 426s 426s skbio/stats/tests/test_composition.py::TestVLR::test_pairwise_vlr 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/composition.py:982: RuntimeWarning: divide by zero encountered in log 426s X_log = np.log(mat) 426s 426s skbio/stats/tests/test_composition.py::TestVLR::test_pairwise_vlr 426s /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2699: RuntimeWarning: invalid value encountered in subtract 426s X -= avg[:, None] 426s 426s skbio/stats/tests/test_composition.py::TestVLR::test_vlr 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/composition.py:837: RuntimeWarning: divide by zero encountered in log 426s x = np.log(x) 426s 426s skbio/stats/tests/test_composition.py::TestVLR::test_vlr 426s /usr/lib/python3/dist-packages/numpy/core/_methods.py:236: RuntimeWarning: invalid value encountered in subtract 426s x = asanyarray(arr - arrmean) 426s 426s skbio/stats/tests/test_gradient.py: 13 warnings 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/gradient.py:168: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 426s np.abs((w_vector[i] - w_vector[i-1])) 426s 426s skbio/stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/stats/gradient.py:166: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 426s trajectories.loc[idx] = ( 426s 426s skbio/util/tests/test_decorator.py::TestDeprecated::test_function_output 426s /tmp/autopkgtest.HHNKi8/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: f is deprecated as of scikit-bio version 0.1.0, and will be removed in version 0.1.4. You should now use skbio.g(). 426s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 426s 426s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 426s = 2350 passed, 30 skipped, 8 xfailed, 2 xpassed, 94 warnings in 60.54s (0:01:00) = 427s autopkgtest [08:32:24]: test testsuite: -----------------------] 427s testsuite PASS 427s autopkgtest [08:32:24]: test testsuite: - - - - - - - - - - results - - - - - - - - - - 428s autopkgtest [08:32:25]: @@@@@@@@@@@@@@@@@@@@ summary 428s import-skbio PASS 428s testsuite PASS 440s Creating nova instance adt-noble-ppc64el-python-skbio-20240323-082517-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240322.img (UUID 8499323f-6fcd-4f77-8a53-77410adea6d3)...