0s autopkgtest [20:00:42]: starting date and time: 2024-03-14 20:00:42+0000 0s autopkgtest [20:00:42]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [20:00:42]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7b6st6nu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:hdf5,src:openmpi,src:openssl,src:pmix --apt-upgrade python-skbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu2 openmpi/4.1.6-5.1ubuntu3 openssl/3.0.13-0ubuntu1 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-1.secgroup --name adt-noble-ppc64el-python-skbio-20240314-200042-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 227s autopkgtest [20:04:29]: testbed dpkg architecture: ppc64el 227s autopkgtest [20:04:29]: testbed apt version: 2.7.12 227s autopkgtest [20:04:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 228s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 229s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3020 kB] 230s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [454 kB] 230s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 230s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [48.4 kB] 230s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [607 kB] 230s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 230s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 230s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 230s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3317 kB] 231s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 231s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [42.8 kB] 231s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 234s Fetched 7625 kB in 3s (2194 kB/s) 234s Reading package lists... 237s Reading package lists... 237s Building dependency tree... 237s Reading state information... 237s Calculating upgrade... 237s The following packages will be REMOVED: 237s libssl3 237s The following NEW packages will be installed: 237s libssl3t64 237s The following packages will be upgraded: 237s openssl 238s 1 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 238s Need to get 3195 kB of archives. 238s After this operation, 6144 B of additional disk space will be used. 238s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu1 [1028 kB] 238s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu1 [2168 kB] 238s Fetched 3195 kB in 1s (4474 kB/s) 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 239s Preparing to unpack .../openssl_3.0.13-0ubuntu1_ppc64el.deb ... 239s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 239s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 239s wget depends on libssl3 (>= 3.0.0). 239s tnftp depends on libssl3 (>= 3.0.0). 239s tcpdump depends on libssl3 (>= 3.0.0). 239s systemd-resolved depends on libssl3 (>= 3.0.0). 239s systemd depends on libssl3 (>= 3.0.0). 239s sudo depends on libssl3 (>= 3.0.0). 239s rsync depends on libssl3 (>= 3.0.0). 239s python3-cryptography depends on libssl3 (>= 3.0.0). 239s openssh-server depends on libssl3 (>= 3.0.10). 239s openssh-client depends on libssl3 (>= 3.0.10). 239s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 239s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 239s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 239s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 239s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 239s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 239s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 239s libnvme1 depends on libssl3 (>= 3.0.0). 239s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 239s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 239s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 239s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 239s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 239s kmod depends on libssl3 (>= 3.0.0). 239s dhcpcd-base depends on libssl3 (>= 3.0.0). 239s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 239s 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 239s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 239s Selecting previously unselected package libssl3t64:ppc64el. 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70084 files and directories currently installed.) 239s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_ppc64el.deb ... 239s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu1) ... 239s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu1) ... 239s Setting up openssl (3.0.13-0ubuntu1) ... 239s Processing triggers for man-db (2.12.0-3) ... 240s Processing triggers for libc-bin (2.39-0ubuntu2) ... 240s Reading package lists... 240s Building dependency tree... 240s Reading state information... 240s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 241s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 241s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 241s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 241s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 242s Reading package lists... 242s Reading package lists... 243s Building dependency tree... 243s Reading state information... 243s Calculating upgrade... 243s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 243s Reading package lists... 243s Building dependency tree... 243s Reading state information... 243s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 246s autopkgtest [20:04:48]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 246s autopkgtest [20:04:48]: @@@@@@@@@@@@@@@@@@@@ apt-source python-skbio 249s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-skbio 0.5.9-4 (dsc) [2804 B] 249s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-skbio 0.5.9-4 (tar) [3559 kB] 249s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-skbio 0.5.9-4 (diff) [15.7 kB] 249s gpgv: Signature made Sun Feb 11 20:35:02 2024 UTC 249s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 249s gpgv: issuer "tille@debian.org" 249s gpgv: Can't check signature: No public key 249s dpkg-source: warning: cannot verify inline signature for ./python-skbio_0.5.9-4.dsc: no acceptable signature found 249s autopkgtest [20:04:51]: testing package python-skbio version 0.5.9-4 249s autopkgtest [20:04:51]: build not needed 254s autopkgtest [20:04:56]: test import-skbio: preparing testbed 255s Reading package lists... 255s Building dependency tree... 255s Reading state information... 255s Starting pkgProblemResolver with broken count: 0 255s Starting 2 pkgProblemResolver with broken count: 0 255s Done 256s The following additional packages will be installed: 256s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libaec0 256s libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 256s libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libimagequant0 libjbig0 256s libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 256s liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 256s libssw0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 256s libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 256s python3-appdirs python3-asttokens python3-brotli python3-contourpy 256s python3-cycler python3-dateutil python3-decorator python3-executing 256s python3-fonttools python3-fs python3-h5py python3-h5py-serial 256s python3-hdmedians python3-iniconfig python3-ipython python3-jedi 256s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 256s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 256s python3-packaging python3-pandas python3-pandas-lib python3-parso 256s python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 256s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 256s python3-scipy python3-skbio python3-stack-data python3-sympy python3-tk 256s python3-traitlets python3-ufolib2 python3-unicodedata2 python3-wcwidth 256s tk8.6-blt2.5 unicode-data x11-common 256s Suggested packages: 256s blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 python-cycler-doc 256s python-h5py-doc python-ipython-doc python-lxml-doc cm-super-minimal dvipng 256s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 256s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 256s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 256s texlive-latex-extra python-mpmath-doc python3-gmpy2 python-natsort-doc gcc 256s gfortran python3-dev python-pandas-doc python3-statsmodels 256s python-pexpect-doc python-pil-doc python-scipy-doc python-skbio-doc 256s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 256s Recommended packages: 256s javascript-common python3-bs4 python3-cssselect python3-html5lib 256s python3-bottleneck python3-numexpr python3-odf python3-openpyxl 256s python3-tables python3-olefile g++ | c++-compiler isympy-common 256s The following NEW packages will be installed: 256s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 256s fonts-lyx libaec0 libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 256s libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 256s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 256s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libqhull-r8.0 256s libraqm0 libsharpyuv0 libssw0 libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 256s libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 256s python-matplotlib-data python3-appdirs python3-asttokens python3-brotli 256s python3-contourpy python3-cycler python3-dateutil python3-decorator 256s python3-executing python3-fonttools python3-fs python3-h5py 256s python3-h5py-serial python3-hdmedians python3-iniconfig python3-ipython 256s python3-jedi python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 256s python3-matplotlib-inline python3-mpmath python3-natsort python3-numpy 256s python3-packaging python3-pandas python3-pandas-lib python3-parso 256s python3-pexpect python3-pil python3-pil.imagetk python3-pluggy 256s python3-prompt-toolkit python3-ptyprocess python3-pure-eval python3-pytest 256s python3-scipy python3-skbio python3-stack-data python3-sympy python3-tk 256s python3-traitlets python3-ufolib2 python3-unicodedata2 python3-wcwidth 256s tk8.6-blt2.5 unicode-data x11-common 256s 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. 256s Need to get 86.7 MB/86.7 MB of archives. 256s After this operation, 444 MB of additional disk space will be used. 256s Get:1 /tmp/autopkgtest.PHngpx/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [712 B] 256s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB] 257s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 257s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 257s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 257s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 257s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 257s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB] 257s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 257s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B] 257s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB] 258s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7 [778 kB] 258s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el blt ppc64el 2.5.3+dfsg-7 [4832 B] 258s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-lyx all 2.4.0~RC3-1 [170 kB] 258s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el libaec0 ppc64el 1.1.2-1 [29.9 kB] 258s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 258s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 258s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 258s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 258s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 258s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 258s Get:22 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsz2 ppc64el 1.1.2-1 [5472 B] 258s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-3.1ubuntu2 [1395 kB] 259s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-3.1ubuntu2 [70.9 kB] 259s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB] 259s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 259s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 259s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 259s Get:29 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 259s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 260s Get:31 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1 [32.8 kB] 260s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] 260s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 260s Get:34 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 260s Get:35 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6 [220 kB] 260s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB] 260s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 260s Get:38 http://ftpmaster.internal/ubuntu noble/universe ppc64el libssw0 ppc64el 1.1-14 [23.9 kB] 260s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 260s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 260s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 260s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB] 260s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB] 260s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libxslt1.1 ppc64el 1.1.35-1 [185 kB] 260s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 261s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 261s Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-asttokens all 2.4.1-1 [20.9 kB] 261s Get:48 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-brotli ppc64el 1.1.0-2 [420 kB] 261s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 262s Get:50 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-contourpy ppc64el 1.0.7-1build2 [300 kB] 262s Get:51 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cycler all 0.11.0-2 [8202 B] 262s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB] 262s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 262s Get:54 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-executing all 2.0.1-0.1 [23.3 kB] 262s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-scipy ppc64el 1.11.4-6 [21.4 MB] 268s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 268s Get:57 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mpmath all 1.2.1-3 [421 kB] 269s Get:58 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-sympy all 1.12-7 [3966 kB] 270s Get:59 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fs all 2.4.16-3 [91.1 kB] 270s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-lxml ppc64el 5.1.0-1 [2191 kB] 270s Get:61 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build2 [28.8 kB] 270s Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1 [368 kB] 270s Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 274s Get:64 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fonttools ppc64el 4.46.0-1 [1746 kB] 275s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-h5py-serial ppc64el 3.10.0-1ubuntu2 [955 kB] 275s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-h5py all 3.10.0-1ubuntu2 [7980 B] 275s Get:67 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-hdmedians ppc64el 0.14.2-5.1 [212 kB] 275s Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 275s Get:69 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-parso all 0.8.3-1 [67.2 kB] 276s Get:70 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-jedi all 0.18.2-1ubuntu1 [692 kB] 276s Get:71 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-traitlets all 5.5.0-2 [85.0 kB] 276s Get:72 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-matplotlib-inline all 0.1.6-2 [8784 B] 276s Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-ptyprocess all 0.7.0-5 [15.1 kB] 276s Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pexpect all 4.9-2 [48.1 kB] 276s Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-wcwidth all 0.2.5+dfsg1-1.1ubuntu1 [22.5 kB] 276s Get:76 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-prompt-toolkit all 3.0.43-1 [256 kB] 276s Get:77 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pure-eval all 0.2.2-1 [11.3 kB] 276s Get:78 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-stack-data all 0.6.3-1 [22.0 kB] 276s Get:79 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ipython all 8.20.0-1 [561 kB] 276s Get:80 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-kiwisolver ppc64el 1.4.4-1build2 [76.5 kB] 276s Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB] 277s Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB] 277s Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-tk ppc64el 3.11.5-1 [116 kB] 277s Get:84 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pil.imagetk ppc64el 10.2.0-1 [10.1 kB] 277s Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 23.2-1 [40.6 kB] 277s Get:86 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-matplotlib ppc64el 3.6.3-1ubuntu3 [7651 kB] 280s Get:87 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-natsort all 8.0.2-2 [33.8 kB] 280s Get:88 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB] 284s Get:89 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 285s Get:90 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pluggy all 1.4.0-1 [20.4 kB] 285s Get:91 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pytest all 7.4.4-1 [305 kB] 285s Get:92 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-skbio ppc64el 0.5.9-4 [969 kB] 286s Fetched 86.7 MB in 30s (2908 kB/s) 286s Selecting previously unselected package libtcl8.6:ppc64el. 286s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70097 files and directories currently installed.) 286s Preparing to unpack .../00-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ... 286s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ... 286s Selecting previously unselected package fonts-dejavu-mono. 286s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 286s Unpacking fonts-dejavu-mono (2.37-8) ... 286s Selecting previously unselected package fonts-dejavu-core. 286s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 286s Unpacking fonts-dejavu-core (2.37-8) ... 286s Selecting previously unselected package fontconfig-config. 286s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 286s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 286s Selecting previously unselected package libfontconfig1:ppc64el. 286s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 286s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 286s Selecting previously unselected package libxrender1:ppc64el. 286s Preparing to unpack .../05-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 286s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 286s Selecting previously unselected package libxft2:ppc64el. 286s Preparing to unpack .../06-libxft2_2.3.6-1_ppc64el.deb ... 286s Unpacking libxft2:ppc64el (2.3.6-1) ... 286s Selecting previously unselected package x11-common. 286s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu2_all.deb ... 286s Unpacking x11-common (1:7.7+23ubuntu2) ... 286s Selecting previously unselected package libxss1:ppc64el. 286s Preparing to unpack .../08-libxss1_1%3a1.2.3-1build2_ppc64el.deb ... 286s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ... 286s Selecting previously unselected package libtk8.6:ppc64el. 286s Preparing to unpack .../09-libtk8.6_8.6.13-2_ppc64el.deb ... 286s Unpacking libtk8.6:ppc64el (8.6.13-2) ... 286s Selecting previously unselected package tk8.6-blt2.5. 286s Preparing to unpack .../10-tk8.6-blt2.5_2.5.3+dfsg-7_ppc64el.deb ... 286s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 287s Selecting previously unselected package blt. 287s Preparing to unpack .../11-blt_2.5.3+dfsg-7_ppc64el.deb ... 287s Unpacking blt (2.5.3+dfsg-7) ... 287s Selecting previously unselected package fonts-lyx. 287s Preparing to unpack .../12-fonts-lyx_2.4.0~RC3-1_all.deb ... 287s Unpacking fonts-lyx (2.4.0~RC3-1) ... 287s Selecting previously unselected package libaec0:ppc64el. 287s Preparing to unpack .../13-libaec0_1.1.2-1_ppc64el.deb ... 287s Unpacking libaec0:ppc64el (1.1.2-1) ... 287s Selecting previously unselected package libblas3:ppc64el. 287s Preparing to unpack .../14-libblas3_3.12.0-3_ppc64el.deb ... 287s Unpacking libblas3:ppc64el (3.12.0-3) ... 287s Selecting previously unselected package libdeflate0:ppc64el. 287s Preparing to unpack .../15-libdeflate0_1.19-1_ppc64el.deb ... 287s Unpacking libdeflate0:ppc64el (1.19-1) ... 287s Selecting previously unselected package libgfortran5:ppc64el. 287s Preparing to unpack .../16-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 287s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 287s Selecting previously unselected package libgomp1:ppc64el. 287s Preparing to unpack .../17-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 287s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 287s Selecting previously unselected package libgraphite2-3:ppc64el. 287s Preparing to unpack .../18-libgraphite2-3_1.3.14-2_ppc64el.deb ... 287s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 287s Selecting previously unselected package libharfbuzz0b:ppc64el. 287s Preparing to unpack .../19-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 287s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 287s Selecting previously unselected package libsz2:ppc64el. 287s Preparing to unpack .../20-libsz2_1.1.2-1_ppc64el.deb ... 287s Unpacking libsz2:ppc64el (1.1.2-1) ... 287s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 287s Preparing to unpack .../21-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu2_ppc64el.deb ... 287s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 287s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 287s Preparing to unpack .../22-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu2_ppc64el.deb ... 287s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 287s Selecting previously unselected package libimagequant0:ppc64el. 287s Preparing to unpack .../23-libimagequant0_2.18.0-1_ppc64el.deb ... 287s Unpacking libimagequant0:ppc64el (2.18.0-1) ... 287s Selecting previously unselected package libjpeg-turbo8:ppc64el. 287s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 287s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 287s Selecting previously unselected package libjpeg8:ppc64el. 287s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 287s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 287s Selecting previously unselected package libjs-jquery. 287s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 287s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 287s Selecting previously unselected package libjs-jquery-ui. 287s Preparing to unpack .../27-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 287s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 287s Selecting previously unselected package liblapack3:ppc64el. 287s Preparing to unpack .../28-liblapack3_3.12.0-3_ppc64el.deb ... 287s Unpacking liblapack3:ppc64el (3.12.0-3) ... 287s Selecting previously unselected package liblbfgsb0:ppc64el. 287s Preparing to unpack .../29-liblbfgsb0_3.0+dfsg.4-1_ppc64el.deb ... 287s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 287s Selecting previously unselected package liblcms2-2:ppc64el. 287s Preparing to unpack .../30-liblcms2-2_2.14-2_ppc64el.deb ... 287s Unpacking liblcms2-2:ppc64el (2.14-2) ... 287s Selecting previously unselected package liblerc4:ppc64el. 287s Preparing to unpack .../31-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 287s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 287s Selecting previously unselected package liblzf1:ppc64el. 287s Preparing to unpack .../32-liblzf1_3.6-4_ppc64el.deb ... 287s Unpacking liblzf1:ppc64el (3.6-4) ... 287s Selecting previously unselected package libqhull-r8.0:ppc64el. 287s Preparing to unpack .../33-libqhull-r8.0_2020.2-6_ppc64el.deb ... 287s Unpacking libqhull-r8.0:ppc64el (2020.2-6) ... 287s Selecting previously unselected package libraqm0:ppc64el. 287s Preparing to unpack .../34-libraqm0_0.10.1-1_ppc64el.deb ... 287s Unpacking libraqm0:ppc64el (0.10.1-1) ... 287s Selecting previously unselected package libsharpyuv0:ppc64el. 287s Preparing to unpack .../35-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 287s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 287s Selecting previously unselected package libssw0:ppc64el. 287s Preparing to unpack .../36-libssw0_1.1-14_ppc64el.deb ... 287s Unpacking libssw0:ppc64el (1.1-14) ... 287s Selecting previously unselected package libjbig0:ppc64el. 287s Preparing to unpack .../37-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 287s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 287s Selecting previously unselected package libwebp7:ppc64el. 287s Preparing to unpack .../38-libwebp7_1.3.2-0.4_ppc64el.deb ... 287s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 287s Selecting previously unselected package libtiff6:ppc64el. 287s Preparing to unpack .../39-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 287s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 287s Selecting previously unselected package libwebpdemux2:ppc64el. 287s Preparing to unpack .../40-libwebpdemux2_1.3.2-0.4_ppc64el.deb ... 287s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ... 287s Selecting previously unselected package libwebpmux3:ppc64el. 287s Preparing to unpack .../41-libwebpmux3_1.3.2-0.4_ppc64el.deb ... 287s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ... 287s Selecting previously unselected package libxslt1.1:ppc64el. 287s Preparing to unpack .../42-libxslt1.1_1.1.35-1_ppc64el.deb ... 287s Unpacking libxslt1.1:ppc64el (1.1.35-1) ... 287s Selecting previously unselected package python-matplotlib-data. 287s Preparing to unpack .../43-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 287s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 287s Selecting previously unselected package python3-appdirs. 287s Preparing to unpack .../44-python3-appdirs_1.4.4-4_all.deb ... 287s Unpacking python3-appdirs (1.4.4-4) ... 287s Selecting previously unselected package python3-asttokens. 287s Preparing to unpack .../45-python3-asttokens_2.4.1-1_all.deb ... 287s Unpacking python3-asttokens (2.4.1-1) ... 287s Selecting previously unselected package python3-brotli. 287s Preparing to unpack .../46-python3-brotli_1.1.0-2_ppc64el.deb ... 287s Unpacking python3-brotli (1.1.0-2) ... 287s Selecting previously unselected package python3-numpy. 287s Preparing to unpack .../47-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 287s Unpacking python3-numpy (1:1.24.2-2) ... 288s Selecting previously unselected package python3-contourpy. 288s Preparing to unpack .../48-python3-contourpy_1.0.7-1build2_ppc64el.deb ... 288s Unpacking python3-contourpy (1.0.7-1build2) ... 288s Selecting previously unselected package python3-cycler. 288s Preparing to unpack .../49-python3-cycler_0.11.0-2_all.deb ... 288s Unpacking python3-cycler (0.11.0-2) ... 288s Selecting previously unselected package python3-dateutil. 288s Preparing to unpack .../50-python3-dateutil_2.8.2-3_all.deb ... 288s Unpacking python3-dateutil (2.8.2-3) ... 288s Selecting previously unselected package python3-decorator. 288s Preparing to unpack .../51-python3-decorator_5.1.1-5_all.deb ... 288s Unpacking python3-decorator (5.1.1-5) ... 288s Selecting previously unselected package python3-executing. 288s Preparing to unpack .../52-python3-executing_2.0.1-0.1_all.deb ... 288s Unpacking python3-executing (2.0.1-0.1) ... 288s Selecting previously unselected package python3-scipy. 288s Preparing to unpack .../53-python3-scipy_1.11.4-6_ppc64el.deb ... 288s Unpacking python3-scipy (1.11.4-6) ... 289s Selecting previously unselected package python3-ufolib2. 289s Preparing to unpack .../54-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 289s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 289s Selecting previously unselected package python3-mpmath. 289s Preparing to unpack .../55-python3-mpmath_1.2.1-3_all.deb ... 289s Unpacking python3-mpmath (1.2.1-3) ... 289s Selecting previously unselected package python3-sympy. 289s Preparing to unpack .../56-python3-sympy_1.12-7_all.deb ... 289s Unpacking python3-sympy (1.12-7) ... 289s Selecting previously unselected package python3-fs. 289s Preparing to unpack .../57-python3-fs_2.4.16-3_all.deb ... 289s Unpacking python3-fs (2.4.16-3) ... 289s Selecting previously unselected package python3-lxml:ppc64el. 289s Preparing to unpack .../58-python3-lxml_5.1.0-1_ppc64el.deb ... 289s Unpacking python3-lxml:ppc64el (5.1.0-1) ... 290s Selecting previously unselected package python3-lz4. 290s Preparing to unpack .../59-python3-lz4_4.0.2+dfsg-1build2_ppc64el.deb ... 290s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 290s Selecting previously unselected package python3-unicodedata2. 290s Preparing to unpack .../60-python3-unicodedata2_15.1.0+ds-1_ppc64el.deb ... 290s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 290s Selecting previously unselected package unicode-data. 290s Preparing to unpack .../61-unicode-data_15.1.0-1_all.deb ... 290s Unpacking unicode-data (15.1.0-1) ... 290s Selecting previously unselected package python3-fonttools. 290s Preparing to unpack .../62-python3-fonttools_4.46.0-1_ppc64el.deb ... 290s Unpacking python3-fonttools (4.46.0-1) ... 290s Selecting previously unselected package python3-h5py-serial. 290s Preparing to unpack .../63-python3-h5py-serial_3.10.0-1ubuntu2_ppc64el.deb ... 290s Unpacking python3-h5py-serial (3.10.0-1ubuntu2) ... 290s Selecting previously unselected package python3-h5py. 290s Preparing to unpack .../64-python3-h5py_3.10.0-1ubuntu2_all.deb ... 290s Unpacking python3-h5py (3.10.0-1ubuntu2) ... 290s Selecting previously unselected package python3-hdmedians. 290s Preparing to unpack .../65-python3-hdmedians_0.14.2-5.1_ppc64el.deb ... 290s Unpacking python3-hdmedians (0.14.2-5.1) ... 290s Selecting previously unselected package python3-iniconfig. 290s Preparing to unpack .../66-python3-iniconfig_1.1.1-2_all.deb ... 290s Unpacking python3-iniconfig (1.1.1-2) ... 290s Selecting previously unselected package python3-parso. 290s Preparing to unpack .../67-python3-parso_0.8.3-1_all.deb ... 290s Unpacking python3-parso (0.8.3-1) ... 290s Selecting previously unselected package python3-jedi. 290s Preparing to unpack .../68-python3-jedi_0.18.2-1ubuntu1_all.deb ... 290s Unpacking python3-jedi (0.18.2-1ubuntu1) ... 290s Selecting previously unselected package python3-traitlets. 290s Preparing to unpack .../69-python3-traitlets_5.5.0-2_all.deb ... 290s Unpacking python3-traitlets (5.5.0-2) ... 290s Selecting previously unselected package python3-matplotlib-inline. 290s Preparing to unpack .../70-python3-matplotlib-inline_0.1.6-2_all.deb ... 290s Unpacking python3-matplotlib-inline (0.1.6-2) ... 290s Selecting previously unselected package python3-ptyprocess. 291s Preparing to unpack .../71-python3-ptyprocess_0.7.0-5_all.deb ... 291s Unpacking python3-ptyprocess (0.7.0-5) ... 291s Selecting previously unselected package python3-pexpect. 291s Preparing to unpack .../72-python3-pexpect_4.9-2_all.deb ... 291s Unpacking python3-pexpect (4.9-2) ... 291s Selecting previously unselected package python3-wcwidth. 291s Preparing to unpack .../73-python3-wcwidth_0.2.5+dfsg1-1.1ubuntu1_all.deb ... 291s Unpacking python3-wcwidth (0.2.5+dfsg1-1.1ubuntu1) ... 291s Selecting previously unselected package python3-prompt-toolkit. 291s Preparing to unpack .../74-python3-prompt-toolkit_3.0.43-1_all.deb ... 291s Unpacking python3-prompt-toolkit (3.0.43-1) ... 291s Selecting previously unselected package python3-pure-eval. 291s Preparing to unpack .../75-python3-pure-eval_0.2.2-1_all.deb ... 291s Unpacking python3-pure-eval (0.2.2-1) ... 291s Selecting previously unselected package python3-stack-data. 291s Preparing to unpack .../76-python3-stack-data_0.6.3-1_all.deb ... 291s Unpacking python3-stack-data (0.6.3-1) ... 291s Selecting previously unselected package python3-ipython. 291s Preparing to unpack .../77-python3-ipython_8.20.0-1_all.deb ... 291s Unpacking python3-ipython (8.20.0-1) ... 291s Selecting previously unselected package python3-kiwisolver. 291s Preparing to unpack .../78-python3-kiwisolver_1.4.4-1build2_ppc64el.deb ... 291s Unpacking python3-kiwisolver (1.4.4-1build2) ... 291s Selecting previously unselected package libopenjp2-7:ppc64el. 291s Preparing to unpack .../79-libopenjp2-7_2.5.0-2_ppc64el.deb ... 291s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ... 291s Selecting previously unselected package python3-pil:ppc64el. 291s Preparing to unpack .../80-python3-pil_10.2.0-1_ppc64el.deb ... 291s Unpacking python3-pil:ppc64el (10.2.0-1) ... 291s Selecting previously unselected package python3-tk:ppc64el. 291s Preparing to unpack .../81-python3-tk_3.11.5-1_ppc64el.deb ... 291s Unpacking python3-tk:ppc64el (3.11.5-1) ... 291s Selecting previously unselected package python3-pil.imagetk:ppc64el. 291s Preparing to unpack .../82-python3-pil.imagetk_10.2.0-1_ppc64el.deb ... 291s Unpacking python3-pil.imagetk:ppc64el (10.2.0-1) ... 291s Selecting previously unselected package python3-packaging. 291s Preparing to unpack .../83-python3-packaging_23.2-1_all.deb ... 291s Unpacking python3-packaging (23.2-1) ... 291s Selecting previously unselected package python3-matplotlib. 291s Preparing to unpack .../84-python3-matplotlib_3.6.3-1ubuntu3_ppc64el.deb ... 291s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 291s Selecting previously unselected package python3-natsort. 291s Preparing to unpack .../85-python3-natsort_8.0.2-2_all.deb ... 291s Unpacking python3-natsort (8.0.2-2) ... 291s Selecting previously unselected package python3-pandas-lib:ppc64el. 291s Preparing to unpack .../86-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_ppc64el.deb ... 291s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 292s Selecting previously unselected package python3-pandas. 292s Preparing to unpack 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(2.12.0-3) ... 328s (Reading database ... 82671 files and directories currently installed.) 328s Removing autopkgtest-satdep (0) ... 329s autopkgtest [20:06:11]: test import-skbio: [----------------------- 331s autopkgtest [20:06:13]: test import-skbio: -----------------------] 332s autopkgtest [20:06:14]: test import-skbio: - - - - - - - - - - results - - - - - - - - - - 332s import-skbio PASS 332s autopkgtest [20:06:14]: test testsuite: preparing testbed 334s Reading package lists... 335s Building dependency tree... 335s Reading state information... 335s Starting pkgProblemResolver with broken count: 0 335s Starting 2 pkgProblemResolver with broken count: 0 335s Done 335s The following NEW packages will be installed: 335s autopkgtest-satdep 335s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 335s Need to get 0 B/716 B of archives. 335s After this operation, 0 B of additional disk space will be used. 335s Get:1 /tmp/autopkgtest.PHngpx/2-autopkgtest-satdep.deb 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Note that the correlation/,/After permuting host : parasite interactions, we find that the observed/d {} ; 339s + find . -name power.py -exec sed -i /Now, let's use random sampling to estimate the power of our test on/,/Based on this power estimate, as we increase our confidence that we have not/d {} ; 339s + http_proxy=http://127.0.0.1:9 python3 -m pytest --pyargs skbio 343s ============================= test session starts ============================== 343s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 343s rootdir: /tmp/autopkgtest.PHngpx/autopkgtest_tmp 343s collected 2390 items 343s 343s skbio/alignment/tests/test_pairwise.py ......................... [ 1%] 343s skbio/alignment/tests/test_ssw.py ........................... [ 2%] 343s skbio/alignment/tests/test_tabular_msa.py .............................. [ 3%] 344s ........................................................................ 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[ 93%] 408s skbio/tree/tests/test_nj.py ........... [ 93%] 408s skbio/tree/tests/test_tree.py .......................................... [ 95%] 408s ................................................... [ 97%] 408s skbio/util/tests/test_decorator.py ....................... [ 98%] 408s skbio/util/tests/test_misc.py .................... [ 99%] 408s skbio/util/tests/test_testing.py ............... [100%] 408s 408s =============================== warnings summary =============================== 408s ../../../usr/lib/python3/dist-packages/dateutil/tz/tz.py:37 408s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). 408s EPOCH = datetime.datetime.utcfromtimestamp(0) 408s 408s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 408s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_invalid_type 408s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_kwargs_are_usable 408s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_same_as_using_StripedSmithWaterman_object_DNA 408s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_same_as_using_StripedSmithWaterman_object_Protein 408s skbio/alignment/tests/test_ssw.py::TestAlignStripedSmithWaterman::test_type_mismatch 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: local_pairwise_align_ssw is deprecated as of scikit-bio version 0.5.8, and will be removed in version 0.6.0. This will be removed or replaced, in favor of more general-purpose performant aligners. Additional details at https://github.com/biocore/scikit-bio/issues/1814 408s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 408s 408s skbio/alignment/tests/test_tabular_msa.py::TestTabularMSAPositionalMetadata::test_constructor_makes_shallow_copy_of_positional_metadata 408s skbio/metadata/tests/test_mixin.py::TestPositionalMetadataMixin::test_constructor_makes_shallow_copy_of_positional_metadata 408s skbio/sequence/tests/test_sequence.py::TestSequencePositionalMetadata::test_constructor_makes_shallow_copy_of_positional_metadata 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/metadata/_testing.py:445: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 408s df['bar'][0].append(42) 408s 408s skbio/alignment/tests/test_tabular_msa.py::TestTabularMSAPositionalMetadata::test_positional_metadata_setter_makes_shallow_copy 408s skbio/metadata/tests/test_mixin.py::TestPositionalMetadataMixin::test_positional_metadata_setter_makes_shallow_copy 408s skbio/sequence/tests/test_sequence.py::TestSequencePositionalMetadata::test_positional_metadata_setter_makes_shallow_copy 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/metadata/_testing.py:823: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 408s df['bar'][0].append(42) 408s 408s skbio/alignment/tests/test_tabular_msa.py::TestGapFrequencies::test_no_positions_relative 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/alignment/_tabular_msa.py:1653: RuntimeWarning: invalid value encountered in divide 408s gap_freqs /= length 408s 408s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/diversity/alpha/_base.py:811: RuntimeWarning: invalid value encountered in scalar divide 408s return shannon(counts, base=np.e) / np.log(observed_otus(counts)) 408s 408s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/diversity/alpha/_base.py:887: RuntimeWarning: invalid value encountered in divide 408s freqs = counts / counts.sum() 408s 408s skbio/diversity/alpha/tests/test_base.py::BaseTests::test_pielou_e 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/diversity/alpha/_base.py:811: RuntimeWarning: divide by zero encountered in log 408s return shannon(counts, base=np.e) / np.log(observed_otus(counts)) 408s 408s skbio/diversity/tests/test_block.py: 3 warnings 408s skbio/diversity/tests/test_driver.py: 9 warnings 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: partial_beta_diversity is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. The return type is unstable. Developer caution is advised. The resulting DistanceMatrix object will include zeros when distance has not been calculated, and therefore can be misleading. 408s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 408s 408s skbio/diversity/tests/test_util.py::ValidationTests::test_validate_counts_vector_invalid_input 408s /usr/lib/python3/dist-packages/numpy/lib/type_check.py:300: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison 408s return imag(x) == 0 408s 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_has_nondegenerates 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: has_nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to has_definites 408s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 408s 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerate_chars 408s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 408s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 408s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 408s skbio/sequence/tests/test_nucleotide_sequences.py::TestNucleotideSequence::test_nondegenerate_chars 408s skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 408s skbio/sequence/tests/test_protein.py::TestProtein::test_nondegenerate_chars 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerate_chars is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definite_chars 408s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 408s 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 408s skbio/sequence/tests/test_grammared_sequence.py::TestGrammaredSequence::test_nondegenerates 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: nondegenerates is deprecated as of scikit-bio version 0.5.0, and will be removed in version 0.6.0. Renamed to definites 408s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 408s 408s skbio/sequence/tests/test_sequence.py::TestSequence::test_frequencies_empty_sequence 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/sequence/_sequence.py:1820: RuntimeWarning: invalid value encountered in divide 408s obs_counts = obs_counts / len(self) 408s 408s skbio/stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_pearson 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/distance/_mantel.py:354: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 408s warnings.warn(ConstantInputWarning()) 408s 408s skbio/stats/distance/tests/test_mantel.py::MantelTests::test_no_variation_spearman 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/distance/_mantel.py:473: ConstantInputWarning: All values in data are exactly equal; results may not be reliable. 408s warnings.warn(ConstantInputWarning()) 408s 408s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_eq_groups 408s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_no_permuations 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -13.541846544269617 and the largest is 16.587201374785895. 408s warn( 408s 408s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_mixedgroups 408s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_uneq_groups 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -15.629533932395201 and the largest is 20.903154277938906. 408s warn( 408s 408s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:188: RuntimeWarning: invalid value encountered in divide 408s proportion_explained = eigvals / sum_eigenvalues 408s 408s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 408s skbio/stats/tests/test_composition.py::AncomTests::test_ancom_no_signal 408s /usr/lib/python3/dist-packages/scipy/stats/_stats_py.py:4167: ConstantInputWarning: Each of the input arrays is constant;the F statistic is not defined or infinite 408s warnings.warn(stats.ConstantInputWarning(msg)) 408s 408s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 408s skbio/stats/distance/tests/test_permdisp.py::testPERMDISP::test_confirm_betadispr_results 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/ordination/_principal_coordinate_analysis.py:143: RuntimeWarning: The result contains negative eigenvalues. Please compare their magnitude with the magnitude of some of the largest positive eigenvalues. If the negative ones are smaller, it's probably safe to ignore them, but if they are large in magnitude, the results won't be useful. See the Notes section for more details. The smallest eigenvalue is -0.00775832514778062 and the largest is 2.7077929489469246. 408s warn( 408s 408s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_no_metadata 408s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_categorical_metadata_and_plot_options 408s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_numeric_metadata_and_plot_options 408s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_png 408s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_repr_png 408s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_repr_svg 408s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_svg 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/ordination/_ordination_results.py:285: UserWarning: Tight layout not applied. The left and right margins cannot be made large enough to accommodate all axes decorations. 408s fig.tight_layout() 408s 408s skbio/stats/ordination/tests/test_ordination_results.py::TestOrdinationResults::test_plot_with_categorical_metadata_and_plot_options 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/ordination/_ordination_results.py:263: UserWarning: No data for colormapping provided via 'c'. Parameters 'cmap' will be ignored 408s plot = scatter_fn(c=point_colors, cmap=cmap) 408s 408s skbio/stats/ordination/tests/test_redundancy_analysis.py::TestRDAErrors::test_shape 408s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 408s return self.run(*args, **kwds) 408s 408s skbio/stats/ordination/tests/test_redundancy_analysis.py::TestRDAResults_biplot_score::test_biplot_score 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/ordination/tests/test_redundancy_analysis.py:248: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 408s scaling = (rda_.eigvals[0] / rda_.eigvals[:6]) 408s 408s skbio/stats/tests/test_composition.py::AncomTests::test_ancom_alternative_test 408s /usr/lib/python3/dist-packages/scipy/stats/_axis_nan_policy.py:523: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable. 408s res = hypotest_fun_out(*samples, **kwds) 408s 408s skbio/stats/tests/test_composition.py::TestVLR::test_pairwise_vlr 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/composition.py:982: RuntimeWarning: divide by zero encountered in log 408s X_log = np.log(mat) 408s 408s skbio/stats/tests/test_composition.py::TestVLR::test_pairwise_vlr 408s /usr/lib/python3/dist-packages/numpy/lib/function_base.py:2699: RuntimeWarning: invalid value encountered in subtract 408s X -= avg[:, None] 408s 408s skbio/stats/tests/test_composition.py::TestVLR::test_vlr 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/composition.py:837: RuntimeWarning: divide by zero encountered in log 408s x = np.log(x) 408s 408s skbio/stats/tests/test_composition.py::TestVLR::test_vlr 408s /usr/lib/python3/dist-packages/numpy/core/_methods.py:236: RuntimeWarning: invalid value encountered in subtract 408s x = asanyarray(arr - arrmean) 408s 408s skbio/stats/tests/test_gradient.py: 13 warnings 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/gradient.py:168: FutureWarning: Series.__getitem__ treating keys as positions is deprecated. In a future version, integer keys will always be treated as labels (consistent with DataFrame behavior). To access a value by position, use `ser.iloc[pos]` 408s np.abs((w_vector[i] - w_vector[i-1])) 408s 408s skbio/stats/tests/test_gradient.py::GradientTests::test_weight_by_vector 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/stats/gradient.py:166: FutureWarning: Setting an item of incompatible dtype is deprecated and will raise in a future error of pandas. Value '6.357142857142857' has dtype incompatible with int64, please explicitly cast to a compatible dtype first. 408s trajectories.loc[idx] = ( 408s 408s skbio/util/tests/test_decorator.py::TestDeprecated::test_function_output 408s /tmp/autopkgtest.PHngpx/autopkgtest_tmp/skbio/util/_decorator.py:254: DeprecationWarning: f is deprecated as of scikit-bio version 0.1.0, and will be removed in version 0.1.4. You should now use skbio.g(). 408s warnings.warn('%s is deprecated as of scikit-bio version %s, and ' 408s 408s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 408s = 2350 passed, 30 skipped, 8 xfailed, 2 xpassed, 94 warnings in 69.06s (0:01:09) = 409s autopkgtest [20:07:31]: test testsuite: -----------------------] 410s autopkgtest [20:07:32]: test testsuite: - - - - - - - - - - results - - - - - - - - - - 410s testsuite PASS 410s autopkgtest [20:07:32]: @@@@@@@@@@@@@@@@@@@@ summary 410s import-skbio PASS 410s testsuite PASS 466s Creating nova instance adt-noble-ppc64el-python-skbio-20240314-200042-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240314.img (UUID a031584c-aec8-4412-bff6-4238354f4d17)...