0s autopkgtest [07:51:36]: starting date and time: 2024-03-23 07:51:36+0000 0s autopkgtest [07:51:36]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [07:51:36]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xolevbd2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sphinx --apt-upgrade python-pybedtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sphinx/7.2.6-6 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-9.secgroup --name adt-noble-ppc64el-python-pybedtools-20240323-075136-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 397s autopkgtest [07:58:13]: testbed dpkg architecture: ppc64el 397s autopkgtest [07:58:13]: testbed apt version: 2.7.12 397s autopkgtest [07:58:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 398s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 399s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 399s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 399s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 399s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4005 kB] 399s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 399s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 399s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 399s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 399s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4250 kB] 400s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 400s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 400s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 403s Fetched 9662 kB in 3s (3607 kB/s) 404s Reading package lists... 406s Reading package lists... 407s Building dependency tree... 407s Reading state information... 407s Calculating upgrade... 407s The following packages will be upgraded: 407s libbsd0 libc-bin libc6 locales 407s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 407s Need to get 8313 kB of archives. 407s After this operation, 2048 B of additional disk space will be used. 407s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6 ppc64el 2.39-0ubuntu6 [3274 kB] 408s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-bin ppc64el 2.39-0ubuntu6 [751 kB] 408s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libbsd0 ppc64el 0.12.1-1 [56.9 kB] 408s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el locales all 2.39-0ubuntu6 [4232 kB] 409s Preconfiguring packages ... 409s Fetched 8313 kB in 2s (5395 kB/s) 409s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 409s Preparing to unpack .../libc6_2.39-0ubuntu6_ppc64el.deb ... 409s Unpacking libc6:ppc64el (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 409s Setting up libc6:ppc64el (2.39-0ubuntu6) ... 410s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 410s Preparing to unpack .../libc-bin_2.39-0ubuntu6_ppc64el.deb ... 410s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 410s Setting up libc-bin (2.39-0ubuntu6) ... 410s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 410s Preparing to unpack .../libbsd0_0.12.1-1_ppc64el.deb ... 410s Unpacking libbsd0:ppc64el (0.12.1-1) over (0.11.8-1) ... 410s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 410s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 410s Setting up locales (2.39-0ubuntu6) ... 411s Generating locales (this might take a while)... 412s en_US.UTF-8... done 412s Generation complete. 412s Setting up libbsd0:ppc64el (0.12.1-1) ... 412s Processing triggers for man-db (2.12.0-3) ... 413s Processing triggers for libc-bin (2.39-0ubuntu6) ... 413s Reading package lists... 414s Building dependency tree... 414s Reading state information... 414s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 415s sh: Attempting to set up Debian/Ubuntu apt sources automatically 415s sh: Distribution appears to be Ubuntu 416s Reading package lists... 416s Building dependency tree... 416s Reading state information... 416s eatmydata is already the newest version (131-1). 416s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 416s Reading package lists... 416s Building dependency tree... 416s Reading state information... 416s dbus is already the newest version (1.14.10-4ubuntu1). 416s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 416s Reading package lists... 416s Building dependency tree... 416s Reading state information... 417s rng-tools-debian is already the newest version (2.4). 417s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 417s Reading package lists... 417s Building dependency tree... 417s Reading state information... 417s The following packages will be REMOVED: 417s cloud-init* python3-configobj* python3-debconf* 417s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 417s After this operation, 3256 kB disk space will be freed. 417s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 417s Removing cloud-init (24.1.2-0ubuntu1) ... 418s Removing python3-configobj (5.0.8-3) ... 418s Removing python3-debconf (1.5.86) ... 418s Processing triggers for man-db (2.12.0-3) ... 418s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69767 files and directories currently installed.) 418s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 419s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 419s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 419s invoke-rc.d: policy-rc.d denied execution of try-restart. 419s Reading package lists... 419s Building dependency tree... 419s Reading state information... 420s linux-generic is already the newest version (6.8.0-11.11+1). 420s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 420s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 420s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 420s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 423s Reading package lists... 423s Reading package lists... 423s Building dependency tree... 423s Reading state information... 423s Calculating upgrade... 423s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 423s Reading package lists... 424s Building dependency tree... 424s Reading state information... 424s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 424s autopkgtest [07:58:40]: rebooting testbed after setup commands that affected boot 614s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 620s autopkgtest [08:01:56]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 623s autopkgtest [08:01:59]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pybedtools 626s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-pybedtools 0.9.1-1 (dsc) [2520 B] 626s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-pybedtools 0.9.1-1 (tar) [12.0 MB] 626s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-pybedtools 0.9.1-1 (diff) [29.9 kB] 627s gpgv: Signature made Wed Nov 1 06:51:36 2023 UTC 627s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 627s gpgv: issuer "tille@debian.org" 627s gpgv: Can't check signature: No public key 627s dpkg-source: warning: cannot verify inline signature for ./python-pybedtools_0.9.1-1.dsc: no acceptable signature found 627s autopkgtest [08:02:03]: testing package python-pybedtools version 0.9.1-1 627s autopkgtest [08:02:03]: build not needed 628s autopkgtest [08:02:04]: test autodep8-python3: preparing testbed 629s Reading package lists... 629s Building dependency tree... 629s Reading state information... 630s Starting pkgProblemResolver with broken count: 0 630s Starting 2 pkgProblemResolver with broken count: 0 630s Done 630s The following additional packages will be installed: 630s libblas3 libdeflate0 libgfortran5 libhts3 libhtscodecs2 liblapack3 630s python3-all python3-numpy python3-pybedtools python3-pysam 630s Suggested packages: 630s gcc gfortran python3-dev python3-pytest python-pybedtools-doc 630s The following NEW packages will be installed: 630s autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3 libhtscodecs2 630s liblapack3 python3-all python3-numpy python3-pybedtools python3-pysam 630s 0 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. 630s Need to get 27.3 MB/27.3 MB of archives. 630s After this operation, 112 MB of additional disk space will be used. 630s Get:1 /tmp/autopkgtest.vajDb4/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 630s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 630s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 630s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 630s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 630s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 631s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 631s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-all ppc64el 3.12.1-0ubuntu2 [904 B] 631s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 631s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pysam ppc64el 0.22.0+ds-1 [5037 kB] 631s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pybedtools ppc64el 0.9.1-1 [12.4 MB] 632s Fetched 27.3 MB in 2s (16.5 MB/s) 632s Selecting previously unselected package libblas3:ppc64el. 632s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69712 files and directories currently installed.) 632s Preparing to unpack .../00-libblas3_3.12.0-3_ppc64el.deb ... 632s Unpacking libblas3:ppc64el (3.12.0-3) ... 632s Selecting previously unselected package libdeflate0:ppc64el. 632s Preparing to unpack .../01-libdeflate0_1.19-1_ppc64el.deb ... 632s Unpacking libdeflate0:ppc64el (1.19-1) ... 632s Selecting previously unselected package libgfortran5:ppc64el. 632s Preparing to unpack .../02-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 632s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 632s Selecting previously unselected package libhtscodecs2:ppc64el. 632s Preparing to unpack .../03-libhtscodecs2_1.6.0-1_ppc64el.deb ... 632s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 632s Selecting previously unselected package libhts3:ppc64el. 632s Preparing to unpack .../04-libhts3_1.18+ds-1_ppc64el.deb ... 632s Unpacking libhts3:ppc64el (1.18+ds-1) ... 632s Selecting previously unselected package liblapack3:ppc64el. 632s Preparing to unpack .../05-liblapack3_3.12.0-3_ppc64el.deb ... 632s Unpacking liblapack3:ppc64el (3.12.0-3) ... 632s Selecting previously unselected package python3-all. 632s Preparing to unpack .../06-python3-all_3.12.1-0ubuntu2_ppc64el.deb ... 632s Unpacking python3-all (3.12.1-0ubuntu2) ... 632s Selecting previously unselected package python3-numpy. 632s Preparing to unpack .../07-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 632s Unpacking python3-numpy (1:1.24.2-2) ... 633s Selecting previously unselected package python3-pysam. 633s Preparing to unpack .../08-python3-pysam_0.22.0+ds-1_ppc64el.deb ... 633s Unpacking python3-pysam (0.22.0+ds-1) ... 633s Selecting previously unselected package python3-pybedtools. 633s Preparing to unpack .../09-python3-pybedtools_0.9.1-1_ppc64el.deb ... 633s Unpacking python3-pybedtools (0.9.1-1) ... 633s Selecting previously unselected package autopkgtest-satdep. 633s Preparing to unpack .../10-1-autopkgtest-satdep.deb ... 633s Unpacking autopkgtest-satdep (0) ... 633s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 633s Setting up libdeflate0:ppc64el (1.19-1) ... 633s Setting up python3-all (3.12.1-0ubuntu2) ... 633s Setting up libblas3:ppc64el (3.12.0-3) ... 633s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 633s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 633s Setting up liblapack3:ppc64el (3.12.0-3) ... 633s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 633s Setting up libhts3:ppc64el (1.18+ds-1) ... 633s Setting up python3-pysam (0.22.0+ds-1) ... 633s Setting up python3-numpy (1:1.24.2-2) ... 635s Setting up python3-pybedtools (0.9.1-1) ... 636s Setting up autopkgtest-satdep (0) ... 636s Processing triggers for man-db (2.12.0-3) ... 636s Processing triggers for libc-bin (2.39-0ubuntu6) ... 638s (Reading database ... 71278 files and directories currently installed.) 638s Removing autopkgtest-satdep (0) ... 639s autopkgtest [08:02:15]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pybedtools; print(pybedtools)" ; done 639s autopkgtest [08:02:15]: test autodep8-python3: [----------------------- 639s Testing with python3.12: 639s 640s autopkgtest [08:02:16]: test autodep8-python3: -----------------------] 640s autopkgtest [08:02:16]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 640s autodep8-python3 PASS (superficial) 640s autopkgtest [08:02:16]: @@@@@@@@@@@@@@@@@@@@ summary 640s autodep8-python3 PASS (superficial) 659s Creating nova instance adt-noble-ppc64el-python-pybedtools-20240323-075136-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240322.img (UUID 8499323f-6fcd-4f77-8a53-77410adea6d3)...