0s autopkgtest [18:37:23]: starting date and time: 2024-03-18 18:37:23+0000
  0s autopkgtest [18:37:23]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [18:37:23]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.r8yt8yo8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ncbi-blast+,src:mbedtls --apt-upgrade python-biotools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ncbi-blast+/2.12.0+ds-4build1 mbedtls/2.28.7-1.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-17.secgroup --name adt-noble-ppc64el-python-biotools-20240318-183723-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
179s autopkgtest [18:40:22]: testbed dpkg architecture: ppc64el
180s autopkgtest [18:40:23]: testbed apt version: 2.7.12
180s autopkgtest [18:40:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup
181s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
181s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB]
181s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
181s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3720 kB]
183s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.0 kB]
183s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [643 kB]
183s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
183s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
183s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
183s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4012 kB]
184s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
184s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [48.4 kB]
184s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
186s Fetched 9098 kB in 4s (2357 kB/s)
187s Reading package lists...
189s Reading package lists...
190s Building dependency tree...
190s Reading state information...
190s Calculating upgrade...
190s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
190s Reading package lists...
190s Building dependency tree...
190s Reading state information...
190s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
191s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
191s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
191s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
191s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
192s Reading package lists...
192s Reading package lists...
192s Building dependency tree...
192s Reading state information...
193s Calculating upgrade...
193s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
193s Reading package lists...
193s Building dependency tree...
193s Reading state information...
193s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
196s autopkgtest [18:40:39]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024
196s autopkgtest [18:40:39]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biotools
198s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-biotools 1.2.12-5 (dsc) [2077 B]
198s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-biotools 1.2.12-5 (tar) [25.4 kB]
198s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-biotools 1.2.12-5 (diff) [7412 B]
198s gpgv: Signature made Fri Dec 13 11:54:57 2019 UTC
198s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
198s gpgv:                issuer "tille@debian.org"
198s gpgv: Can't check signature: No public key
198s dpkg-source: warning: cannot verify inline signature for ./python-biotools_1.2.12-5.dsc: no acceptable signature found
198s autopkgtest [18:40:41]: testing package python-biotools version 1.2.12-5
199s autopkgtest [18:40:42]: build not needed
200s autopkgtest [18:40:43]: test autodep8-python3: preparing testbed
201s Reading package lists...
201s Building dependency tree...
201s Reading state information...
201s Starting pkgProblemResolver with broken count: 0
201s Starting 2 pkgProblemResolver with broken count: 0
201s Done
202s The following additional packages will be installed:
202s   blt clustalw fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx
202s   libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3
202s   libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery
202s   libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libmbedcrypto7t64
202s   libmbedtls14t64 libmbedx509-1t64 libopenjp2-7 libqhull-r8.0 libraqm0
202s   libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3
202s   libxft2 libxrender1 libxslt1.1 libxss1 ncbi-blast+ ncbi-data
202s   python-matplotlib-data python3-all python3-appdirs python3-biotools
202s   python3-brotli python3-contourpy python3-cycler python3-dateutil
202s   python3-decorator python3-fonttools python3-fs python3-kiwisolver
202s   python3-lxml python3-lz4 python3-matplotlib python3-mpmath python3-numpy
202s   python3-packaging python3-pil python3-pil.imagetk python3-scipy
202s   python3-sympy python3-tk python3-ufolib2 tk8.6-blt2.5 unicode-data
202s   x11-common
202s Suggested packages:
202s   blt-demo clustalx seaview libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6
202s   python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg
202s   fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common
202s   python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
202s   python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc
202s   python3-gmpy2 gcc gfortran python3-dev python3-pytest python-pil-doc
202s   python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg
202s Recommended packages:
202s   javascript-common python3-bs4 python3-cssselect python3-html5lib
202s   python3-olefile g++ | c++-compiler isympy-common
202s The following NEW packages will be installed:
202s   autopkgtest-satdep blt clustalw fontconfig-config fonts-dejavu-core
202s   fonts-dejavu-mono fonts-lyx libblas3 libdeflate0 libfontconfig1 libgfortran5
202s   libgomp1 libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8
202s   libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2
202s   liblerc4 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libopenjp2-7
202s   libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7
202s   libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 libxss1 ncbi-blast+
202s   ncbi-data python-matplotlib-data python3-all python3-appdirs
202s   python3-biotools python3-brotli python3-contourpy python3-cycler
202s   python3-dateutil python3-decorator python3-fonttools python3-fs
202s   python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib
202s   python3-mpmath python3-numpy python3-packaging python3-pil
202s   python3-pil.imagetk python3-scipy python3-sympy python3-tk python3-ufolib2
202s   tk8.6-blt2.5 unicode-data x11-common
202s 0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded.
202s Need to get 87.3 MB/87.3 MB of archives.
202s After this operation, 420 MB of additional disk space will be used.
202s Get:1 /tmp/autopkgtest.m1KCcr/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B]
202s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB]
202s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
202s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
202s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB]
202s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB]
202s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB]
202s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB]
202s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB]
203s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B]
203s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB]
203s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7 [778 kB]
203s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el blt ppc64el 2.5.3+dfsg-7 [4832 B]
203s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el clustalw ppc64el 2.1+lgpl-7 [313 kB]
203s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-lyx all 2.4.0~RC3-1 [170 kB]
203s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB]
203s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
203s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB]
203s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB]
203s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB]
203s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB]
203s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB]
203s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB]
203s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
203s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
203s Get:26 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
203s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB]
203s Get:28 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1 [32.8 kB]
203s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB]
203s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB]
203s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedcrypto7t64 ppc64el 2.28.7-1.1ubuntu1 [264 kB]
203s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedx509-1t64 ppc64el 2.28.7-1.1ubuntu1 [51.8 kB]
203s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedtls14t64 ppc64el 2.28.7-1.1ubuntu1 [90.5 kB]
203s Get:34 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6 [220 kB]
203s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB]
203s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB]
203s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB]
203s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB]
203s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB]
203s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB]
203s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB]
203s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libxslt1.1 ppc64el 1.1.35-1 [185 kB]
203s Get:43 http://ftpmaster.internal/ubuntu noble/universe ppc64el ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB]
203s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el ncbi-blast+ ppc64el 2.12.0+ds-4build1 [13.6 MB]
204s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB]
204s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-all ppc64el 3.12.1-0ubuntu2 [904 B]
204s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB]
204s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB]
204s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB]
204s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB]
204s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-tk ppc64el 3.11.5-1 [116 kB]
204s Get:52 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pil.imagetk ppc64el 10.2.0-1 [10.1 kB]
204s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB]
204s Get:54 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-contourpy ppc64el 1.0.7-1build2 [300 kB]
204s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cycler all 0.11.0-2 [8202 B]
204s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-brotli ppc64el 1.1.0-2 [420 kB]
204s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB]
204s Get:58 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-scipy ppc64el 1.11.4-6 [21.4 MB]
205s Get:59 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
205s Get:60 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mpmath all 1.2.1-3 [421 kB]
205s Get:61 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-sympy all 1.12-7 [3966 kB]
205s Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fs all 2.4.16-3 [91.1 kB]
205s Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-lxml ppc64el 5.1.0-1 [2191 kB]
206s Get:64 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build2 [28.8 kB]
206s Get:65 http://ftpmaster.internal/ubuntu noble/universe ppc64el unicode-data all 15.1.0-1 [8878 kB]
206s Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fonttools ppc64el 4.46.0-1 [1746 kB]
206s Get:67 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-kiwisolver ppc64el 1.4.4-1build2 [76.5 kB]
206s Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 23.2-1 [40.6 kB]
206s Get:69 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-matplotlib ppc64el 3.6.3-1ubuntu3 [7651 kB]
206s Get:70 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biotools all 1.2.12-5 [28.9 kB]
207s Fetched 87.3 MB in 5s (18.2 MB/s)
207s Selecting previously unselected package libtcl8.6:ppc64el.
207s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 70095 files and directories currently installed.)
207s Preparing to unpack .../00-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ...
207s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ...
207s Selecting previously unselected package fonts-dejavu-mono.
207s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
207s Unpacking fonts-dejavu-mono (2.37-8) ...
207s Selecting previously unselected package fonts-dejavu-core.
207s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
207s Unpacking fonts-dejavu-core (2.37-8) ...
207s Selecting previously unselected package fontconfig-config.
207s Preparing to unpack .../03-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ...
207s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
207s Selecting previously unselected package libfontconfig1:ppc64el.
207s Preparing to unpack .../04-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ...
207s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
207s Selecting previously unselected package libxrender1:ppc64el.
207s Preparing to unpack .../05-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ...
207s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ...
207s Selecting previously unselected package libxft2:ppc64el.
207s Preparing to unpack .../06-libxft2_2.3.6-1_ppc64el.deb ...
207s Unpacking libxft2:ppc64el (2.3.6-1) ...
207s Selecting previously unselected package x11-common.
207s Preparing to unpack .../07-x11-common_1%3a7.7+23ubuntu2_all.deb ...
207s Unpacking x11-common (1:7.7+23ubuntu2) ...
207s Selecting previously unselected package libxss1:ppc64el.
207s Preparing to unpack .../08-libxss1_1%3a1.2.3-1build2_ppc64el.deb ...
207s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ...
207s Selecting previously unselected package libtk8.6:ppc64el.
207s Preparing to unpack .../09-libtk8.6_8.6.13-2_ppc64el.deb ...
207s Unpacking libtk8.6:ppc64el (8.6.13-2) ...
207s Selecting previously unselected package tk8.6-blt2.5.
207s Preparing to unpack .../10-tk8.6-blt2.5_2.5.3+dfsg-7_ppc64el.deb ...
207s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ...
207s Selecting previously unselected package blt.
207s Preparing to unpack .../11-blt_2.5.3+dfsg-7_ppc64el.deb ...
207s Unpacking blt (2.5.3+dfsg-7) ...
207s Selecting previously unselected package clustalw.
207s Preparing to unpack .../12-clustalw_2.1+lgpl-7_ppc64el.deb ...
207s Unpacking clustalw (2.1+lgpl-7) ...
207s Selecting previously unselected package fonts-lyx.
207s Preparing to unpack .../13-fonts-lyx_2.4.0~RC3-1_all.deb ...
207s Unpacking fonts-lyx (2.4.0~RC3-1) ...
207s Selecting previously unselected package libblas3:ppc64el.
207s Preparing to unpack .../14-libblas3_3.12.0-3_ppc64el.deb ...
207s Unpacking libblas3:ppc64el (3.12.0-3) ...
207s Selecting previously unselected package libdeflate0:ppc64el.
207s Preparing to unpack .../15-libdeflate0_1.19-1_ppc64el.deb ...
207s Unpacking libdeflate0:ppc64el (1.19-1) ...
207s Selecting previously unselected package libgfortran5:ppc64el.
207s Preparing to unpack .../16-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ...
207s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
207s Selecting previously unselected package libgomp1:ppc64el.
207s Preparing to unpack .../17-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ...
207s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ...
208s Selecting previously unselected package libgraphite2-3:ppc64el.
208s Preparing to unpack .../18-libgraphite2-3_1.3.14-2_ppc64el.deb ...
208s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ...
208s Selecting previously unselected package libharfbuzz0b:ppc64el.
208s Preparing to unpack .../19-libharfbuzz0b_8.3.0-2_ppc64el.deb ...
208s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ...
208s Selecting previously unselected package libimagequant0:ppc64el.
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208s Unpacking libimagequant0:ppc64el (2.18.0-1) ...
208s Selecting previously unselected package libjpeg-turbo8:ppc64el.
208s Preparing to unpack .../21-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ...
208s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
208s Selecting previously unselected package libjpeg8:ppc64el.
208s Preparing to unpack .../22-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
208s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
208s Selecting previously unselected package libjs-jquery.
208s Preparing to unpack .../23-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
208s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
208s Selecting previously unselected package libjs-jquery-ui.
208s Preparing to unpack .../24-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
208s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
208s Selecting previously unselected package liblapack3:ppc64el.
208s Preparing to unpack .../25-liblapack3_3.12.0-3_ppc64el.deb ...
208s Unpacking liblapack3:ppc64el (3.12.0-3) ...
208s Selecting previously unselected package liblbfgsb0:ppc64el.
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208s Selecting previously unselected package liblcms2-2:ppc64el.
208s Preparing to unpack .../27-liblcms2-2_2.14-2_ppc64el.deb ...
208s Unpacking liblcms2-2:ppc64el (2.14-2) ...
208s Selecting previously unselected package liblerc4:ppc64el.
208s Preparing to unpack .../28-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ...
208s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
208s Selecting previously unselected package libmbedcrypto7t64:ppc64el.
208s Preparing to unpack .../29-libmbedcrypto7t64_2.28.7-1.1ubuntu1_ppc64el.deb ...
208s Unpacking libmbedcrypto7t64:ppc64el (2.28.7-1.1ubuntu1) ...
208s Selecting previously unselected package libmbedx509-1t64:ppc64el.
208s Preparing to unpack .../30-libmbedx509-1t64_2.28.7-1.1ubuntu1_ppc64el.deb ...
208s Unpacking libmbedx509-1t64:ppc64el (2.28.7-1.1ubuntu1) ...
208s Selecting previously unselected package libmbedtls14t64:ppc64el.
208s Preparing to unpack .../31-libmbedtls14t64_2.28.7-1.1ubuntu1_ppc64el.deb ...
208s Unpacking libmbedtls14t64:ppc64el (2.28.7-1.1ubuntu1) ...
208s Selecting previously unselected package libqhull-r8.0:ppc64el.
208s Preparing to unpack .../32-libqhull-r8.0_2020.2-6_ppc64el.deb ...
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208s Selecting previously unselected package libraqm0:ppc64el.
208s Preparing to unpack .../33-libraqm0_0.10.1-1_ppc64el.deb ...
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208s Selecting previously unselected package libsharpyuv0:ppc64el.
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208s Selecting previously unselected package libjbig0:ppc64el.
208s Preparing to unpack .../35-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ...
208s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ...
208s Selecting previously unselected package libwebp7:ppc64el.
208s Preparing to unpack .../36-libwebp7_1.3.2-0.4_ppc64el.deb ...
208s Unpacking libwebp7:ppc64el (1.3.2-0.4) ...
208s Selecting previously unselected package libtiff6:ppc64el.
208s Preparing to unpack .../37-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ...
208s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
208s Selecting previously unselected package libwebpdemux2:ppc64el.
208s Preparing to unpack .../38-libwebpdemux2_1.3.2-0.4_ppc64el.deb ...
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208s Selecting previously unselected package libwebpmux3:ppc64el.
208s Preparing to unpack .../39-libwebpmux3_1.3.2-0.4_ppc64el.deb ...
208s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ...
208s Selecting previously unselected package libxslt1.1:ppc64el.
208s Preparing to unpack .../40-libxslt1.1_1.1.35-1_ppc64el.deb ...
208s Unpacking libxslt1.1:ppc64el (1.1.35-1) ...
208s Selecting previously unselected package ncbi-data.
208s Preparing to unpack .../41-ncbi-data_6.1.20170106+dfsg1-10_all.deb ...
208s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ...
208s Selecting previously unselected package ncbi-blast+.
208s Preparing to unpack .../42-ncbi-blast+_2.12.0+ds-4build1_ppc64el.deb ...
208s Unpacking ncbi-blast+ (2.12.0+ds-4build1) ...
209s Selecting previously unselected package python-matplotlib-data.
209s Preparing to unpack .../43-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ...
209s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ...
209s Selecting previously unselected package python3-all.
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209s Selecting previously unselected package python3-appdirs.
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209s Unpacking python3-appdirs (1.4.4-4) ...
209s Selecting previously unselected package python3-dateutil.
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209s Unpacking python3-dateutil (2.8.2-3) ...
209s Selecting previously unselected package libopenjp2-7:ppc64el.
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209s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ...
209s Selecting previously unselected package python3-pil:ppc64el.
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209s Unpacking python3-pil:ppc64el (10.2.0-1) ...
209s Selecting previously unselected package python3-tk:ppc64el.
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209s Selecting previously unselected package python3-pil.imagetk:ppc64el.
209s Preparing to unpack .../50-python3-pil.imagetk_10.2.0-1_ppc64el.deb ...
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209s Selecting previously unselected package python3-numpy.
209s Preparing to unpack .../51-python3-numpy_1%3a1.24.2-2_ppc64el.deb ...
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209s Selecting previously unselected package python3-contourpy.
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209s Selecting previously unselected package python3-cycler.
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209s Selecting previously unselected package python3-brotli.
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210s Selecting previously unselected package python3-ufolib2.
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210s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
210s Selecting previously unselected package python3-mpmath.
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210s Unpacking python3-mpmath (1.2.1-3) ...
210s Selecting previously unselected package python3-sympy.
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210s Unpacking python3-sympy (1.12-7) ...
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211s Selecting previously unselected package python3-lxml:ppc64el.
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211s Selecting previously unselected package python3-lz4.
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211s Unpacking unicode-data (15.1.0-1) ...
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211s Selecting previously unselected package python3-kiwisolver.
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211s Unpacking python3-biotools (1.2.12-5) ...
211s Selecting previously unselected package autopkgtest-satdep.
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211s Unpacking autopkgtest-satdep (0) ...
211s Setting up libgraphite2-3:ppc64el (1.3.14-2) ...
211s Setting up liblcms2-2:ppc64el (2.14-2) ...
211s Setting up ncbi-data (6.1.20170106+dfsg1-10) ...
211s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ...
211s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
211s Setting up libmbedcrypto7t64:ppc64el (2.28.7-1.1ubuntu1) ...
211s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ...
211s Setting up python3-lz4 (4.0.2+dfsg-1build2) ...
212s Setting up fonts-lyx (2.4.0~RC3-1) ...
212s Setting up x11-common (1:7.7+23ubuntu2) ...
212s Setting up libdeflate0:ppc64el (1.19-1) ...
212s Setting up libqhull-r8.0:ppc64el (2020.2-6) ...
212s Setting up python3-all (3.12.1-0ubuntu2) ...
212s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ...
212s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ...
212s Setting up unicode-data (15.1.0-1) ...
212s Setting up python3-decorator (5.1.1-5) ...
212s Setting up libblas3:ppc64el (3.12.0-3) ...
212s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
212s Setting up python3-packaging (23.2-1) ...
212s Setting up python3-brotli (1.1.0-2) ...
212s Setting up python3-cycler (0.11.0-2) ...
213s Setting up libimagequant0:ppc64el (2.18.0-1) ...
213s Setting up fonts-dejavu-mono (2.37-8) ...
213s Setting up python3-kiwisolver (1.4.4-1build2) ...
213s Setting up libtcl8.6:ppc64el (8.6.13+dfsg-2) ...
213s Setting up fonts-dejavu-core (2.37-8) ...
213s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
213s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
213s Setting up libwebp7:ppc64el (1.3.2-0.4) ...
213s Setting up libxslt1.1:ppc64el (1.1.35-1) ...
213s Setting up clustalw (2.1+lgpl-7) ...
213s Setting up libopenjp2-7:ppc64el (2.5.0-2) ...
213s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ...
213s Setting up python3-dateutil (2.8.2-3) ...
213s Setting up libxss1:ppc64el (1:1.2.3-1build2) ...
213s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
213s Setting up python3-mpmath (1.2.1-3) ...
213s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ...
213s Setting up libwebpmux3:ppc64el (1.3.2-0.4) ...
213s Setting up python3-appdirs (1.4.4-4) ...
214s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
214s Setting up python3-sympy (1.12-7) ...
219s Setting up liblapack3:ppc64el (3.12.0-3) ...
219s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
220s Setting up libmbedx509-1t64:ppc64el (2.28.7-1.1ubuntu1) ...
220s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
220s Setting up libwebpdemux2:ppc64el (1.3.2-0.4) ...
220s Setting up python3-fs (2.4.16-3) ...
220s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
220s Setting up libraqm0:ppc64el (0.10.1-1) ...
220s Setting up python3-numpy (1:1.24.2-2) ...
222s Setting up libmbedtls14t64:ppc64el (2.28.7-1.1ubuntu1) ...
222s Setting up python3-lxml:ppc64el (5.1.0-1) ...
222s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
222s Setting up python3-contourpy (1.0.7-1build2) ...
222s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
222s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1) ...
222s Setting up libxft2:ppc64el (2.3.6-1) ...
222s Setting up python3-scipy (1.11.4-6) ...
225s Setting up libtk8.6:ppc64el (8.6.13-2) ...
225s Setting up ncbi-blast+ (2.12.0+ds-4build1) ...
225s Setting up python3-pil:ppc64el (10.2.0-1) ...
226s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ...
226s Setting up blt (2.5.3+dfsg-7) ...
226s Setting up python3-tk:ppc64el (3.11.5-1) ...
226s Setting up python3-pil.imagetk:ppc64el (10.2.0-1) ...
226s Setting up python3-fonttools (4.46.0-1) ...
227s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
227s Setting up python3-matplotlib (3.6.3-1ubuntu3) ...
229s Setting up python3-biotools (1.2.12-5) ...
229s Setting up autopkgtest-satdep (0) ...
229s Processing triggers for libc-bin (2.39-0ubuntu2) ...
229s Processing triggers for man-db (2.12.0-3) ...
233s (Reading database ... 77367 files and directories currently installed.)
233s Removing autopkgtest-satdep (0) ...
233s autopkgtest [18:41:16]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import biotools; print(biotools)" ; done
233s autopkgtest [18:41:16]: test autodep8-python3: [-----------------------
233s Testing with python3.12:
233s <module 'biotools' from '/usr/lib/python3/dist-packages/biotools/__init__.py'>
234s autopkgtest [18:41:17]: test autodep8-python3: -----------------------]
234s autopkgtest [18:41:17]: test autodep8-python3:  - - - - - - - - - - results - - - - - - - - - -
234s autodep8-python3     PASS (superficial)
235s autopkgtest [18:41:18]: @@@@@@@@@@@@@@@@@@@@ summary
235s autodep8-python3     PASS (superficial)
250s Creating nova instance adt-noble-ppc64el-python-biotools-20240318-183723-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240316.img (UUID 1492b190-05c5-462d-b1de-84bc330afe32)...