0s autopkgtest [19:59:48]: starting date and time: 2024-03-14 19:59:48+0000 0s autopkgtest [19:59:48]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [19:59:48]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i1nsca1r/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:hdf5,src:openmpi,src:openssl,src:pmix --apt-upgrade python-biom-format --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu2 openmpi/4.1.6-5.1ubuntu3 openssl/3.0.13-0ubuntu1 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-ppc64el-6.secgroup --name adt-noble-ppc64el-python-biom-format-20240314-195948-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 107s autopkgtest [20:01:35]: testbed dpkg architecture: ppc64el 107s autopkgtest [20:01:35]: testbed apt version: 2.7.12 107s autopkgtest [20:01:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 108s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 108s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 109s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [454 kB] 109s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [48.4 kB] 109s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3020 kB] 109s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [607 kB] 109s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 109s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 109s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 109s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3317 kB] 109s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 109s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [42.8 kB] 109s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 112s Fetched 7625 kB in 2s (3894 kB/s) 112s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 116s The following packages will be REMOVED: 116s libssl3 116s The following NEW packages will be installed: 116s libssl3t64 116s The following packages will be upgraded: 116s dosfstools openssl 116s 2 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 116s Need to get 3297 kB of archives. 116s After this operation, 3072 B disk space will be freed. 116s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu1 [1028 kB] 117s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu1 [2168 kB] 118s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el dosfstools ppc64el 4.2-1.1 [101 kB] 118s Fetched 3297 kB in 2s (1444 kB/s) 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70096 files and directories currently installed.) 118s Preparing to unpack .../openssl_3.0.13-0ubuntu1_ppc64el.deb ... 118s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 118s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 118s wget depends on libssl3 (>= 3.0.0). 118s tnftp depends on libssl3 (>= 3.0.0). 118s tcpdump depends on libssl3 (>= 3.0.0). 118s systemd-resolved depends on libssl3 (>= 3.0.0). 118s systemd depends on libssl3 (>= 3.0.0). 118s sudo depends on libssl3 (>= 3.0.0). 118s rsync depends on libssl3 (>= 3.0.0). 118s python3-cryptography depends on libssl3 (>= 3.0.0). 118s openssh-server depends on libssl3 (>= 3.0.10). 118s openssh-client depends on libssl3 (>= 3.0.10). 118s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 118s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 118s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 118s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 118s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 118s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 118s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 118s libnvme1 depends on libssl3 (>= 3.0.0). 118s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 118s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 118s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 118s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 118s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 118s kmod depends on libssl3 (>= 3.0.0). 118s dhcpcd-base depends on libssl3 (>= 3.0.0). 118s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 118s 118s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70096 files and directories currently installed.) 118s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 118s Selecting previously unselected package libssl3t64:ppc64el. 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70085 files and directories currently installed.) 119s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_ppc64el.deb ... 119s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu1) ... 119s Preparing to unpack .../dosfstools_4.2-1.1_ppc64el.deb ... 119s Unpacking dosfstools (4.2-1.1) over (4.2-1build3) ... 119s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu1) ... 119s Setting up dosfstools (4.2-1.1) ... 119s Setting up openssl (3.0.13-0ubuntu1) ... 119s Processing triggers for man-db (2.12.0-3) ... 119s Processing triggers for libc-bin (2.39-0ubuntu2) ... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 121s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 121s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 121s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 122s Reading package lists... 122s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s Calculating upgrade... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s autopkgtest [20:01:54]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 126s autopkgtest [20:01:54]: @@@@@@@@@@@@@@@@@@@@ apt-source python-biom-format 133s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-biom-format 2.1.15.2-3 (dsc) [1883 B] 133s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-biom-format 2.1.15.2-3 (tar) [11.9 MB] 133s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-biom-format 2.1.15.2-3 (diff) [11.5 kB] 133s gpgv: Signature made Sun Feb 4 19:23:04 2024 UTC 133s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 133s gpgv: Can't check signature: No public key 133s dpkg-source: warning: cannot verify inline signature for ./python-biom-format_2.1.15.2-3.dsc: no acceptable signature found 133s autopkgtest [20:02:01]: testing package python-biom-format version 2.1.15.2-3 134s autopkgtest [20:02:02]: build not needed 136s autopkgtest [20:02:04]: test run-unit-test: preparing testbed 143s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Starting pkgProblemResolver with broken count: 0 144s Starting 2 pkgProblemResolver with broken count: 0 144s Done 144s The following additional packages will be installed: 144s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 144s libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblzf1 144s libsz2 python-biom-format-doc python3-biom-format python3-click 144s python3-colorama python3-dateutil python3-decorator python3-h5py 144s python3-h5py-serial python3-numpy python3-pandas python3-pandas-lib 144s python3-scipy 144s Suggested packages: 144s python-h5py-doc gcc gfortran python3-dev python3-pytest python-pandas-doc 144s python3-statsmodels python-scipy-doc 144s Recommended packages: 144s javascript-common python3-matplotlib python3-bottleneck python3-numexpr 144s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 144s python3-tables g++ | c++-compiler python3-pil 144s The following NEW packages will be installed: 144s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 144s libhdf5-hl-100t64 libjs-jquery libjs-sphinxdoc libjs-underscore liblapack3 144s liblbfgsb0 liblzf1 libsz2 python-biom-format-doc python3-biom-format 144s python3-click python3-colorama python3-dateutil python3-decorator 144s python3-h5py python3-h5py-serial python3-numpy python3-pandas 144s python3-pandas-lib python3-scipy 144s 0 upgraded, 25 newly installed, 0 to remove and 0 not upgraded. 144s Need to get 46.1 MB/46.1 MB of archives. 144s After this operation, 258 MB of additional disk space will be used. 144s Get:1 /tmp/autopkgtest.lsuHhA/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 144s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el libaec0 ppc64el 1.1.2-1 [29.9 kB] 145s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 145s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 145s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsz2 ppc64el 1.1.2-1 [5472 B] 145s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-3.1ubuntu2 [1395 kB] 145s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-3.1ubuntu2 [70.9 kB] 145s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 145s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 145s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-sphinxdoc all 7.2.6-4 [149 kB] 146s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 146s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1 [32.8 kB] 146s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 146s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el python-biom-format-doc all 2.1.15.2-3 [57.1 kB] 146s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 147s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-h5py-serial ppc64el 3.10.0-1ubuntu2 [955 kB] 147s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-h5py all 3.10.0-1ubuntu2 [7980 B] 147s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 147s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-click all 8.1.6-1 [79.0 kB] 147s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB] 147s Get:21 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB] 147s Get:22 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 148s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 148s Get:24 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-scipy ppc64el 1.11.4-6 [21.4 MB] 148s Get:25 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biom-format ppc64el 2.1.15.2-3 [195 kB] 149s Fetched 46.1 MB in 4s (11.1 MB/s) 149s Selecting previously unselected package libaec0:ppc64el. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70097 files and directories currently installed.) 149s Preparing to unpack .../00-libaec0_1.1.2-1_ppc64el.deb ... 149s Unpacking libaec0:ppc64el (1.1.2-1) ... 149s Selecting previously unselected package libblas3:ppc64el. 149s Preparing to unpack .../01-libblas3_3.12.0-3_ppc64el.deb ... 149s Unpacking libblas3:ppc64el (3.12.0-3) ... 149s Selecting previously unselected package libgfortran5:ppc64el. 149s Preparing to unpack .../02-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 149s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 149s Selecting previously unselected package libsz2:ppc64el. 149s Preparing to unpack .../03-libsz2_1.1.2-1_ppc64el.deb ... 149s Unpacking libsz2:ppc64el (1.1.2-1) ... 149s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 149s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu2_ppc64el.deb ... 149s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 149s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 149s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu2_ppc64el.deb ... 149s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 149s Selecting previously unselected package libjs-jquery. 149s Preparing to unpack .../06-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 149s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 149s Selecting previously unselected package libjs-underscore. 149s Preparing to unpack .../07-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 149s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 149s Selecting previously unselected package libjs-sphinxdoc. 149s Preparing to unpack .../08-libjs-sphinxdoc_7.2.6-4_all.deb ... 149s Unpacking libjs-sphinxdoc (7.2.6-4) ... 149s Selecting previously unselected package liblapack3:ppc64el. 149s Preparing to unpack .../09-liblapack3_3.12.0-3_ppc64el.deb ... 149s Unpacking liblapack3:ppc64el (3.12.0-3) ... 149s Selecting previously unselected package liblbfgsb0:ppc64el. 149s Preparing to unpack .../10-liblbfgsb0_3.0+dfsg.4-1_ppc64el.deb ... 149s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 149s Selecting previously unselected package liblzf1:ppc64el. 149s Preparing to unpack .../11-liblzf1_3.6-4_ppc64el.deb ... 149s Unpacking liblzf1:ppc64el (3.6-4) ... 149s Selecting previously unselected package python-biom-format-doc. 149s Preparing to unpack .../12-python-biom-format-doc_2.1.15.2-3_all.deb ... 149s Unpacking python-biom-format-doc (2.1.15.2-3) ... 149s Selecting previously unselected package python3-numpy. 149s Preparing to unpack .../13-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 149s Unpacking python3-numpy (1:1.24.2-2) ... 149s Selecting previously unselected package python3-h5py-serial. 149s Preparing to unpack .../14-python3-h5py-serial_3.10.0-1ubuntu2_ppc64el.deb ... 149s Unpacking python3-h5py-serial (3.10.0-1ubuntu2) ... 149s Selecting previously unselected package python3-h5py. 149s Preparing to unpack .../15-python3-h5py_3.10.0-1ubuntu2_all.deb ... 149s Unpacking python3-h5py (3.10.0-1ubuntu2) ... 150s Selecting previously unselected package python3-colorama. 150s Preparing to unpack .../16-python3-colorama_0.4.6-4_all.deb ... 150s Unpacking python3-colorama (0.4.6-4) ... 150s Selecting previously unselected package python3-click. 150s Preparing to unpack .../17-python3-click_8.1.6-1_all.deb ... 150s Unpacking python3-click (8.1.6-1) ... 150s Selecting previously unselected package python3-dateutil. 150s Preparing to unpack .../18-python3-dateutil_2.8.2-3_all.deb ... 150s Unpacking python3-dateutil (2.8.2-3) ... 150s Selecting previously unselected package python3-pandas-lib:ppc64el. 150s Preparing to unpack .../19-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_ppc64el.deb ... 150s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 150s Selecting previously unselected package python3-pandas. 150s Preparing to unpack .../20-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 150s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 150s Selecting previously unselected package python3-decorator. 150s Preparing to unpack .../21-python3-decorator_5.1.1-5_all.deb ... 150s Unpacking python3-decorator (5.1.1-5) ... 150s Selecting previously unselected package python3-scipy. 150s Preparing to unpack .../22-python3-scipy_1.11.4-6_ppc64el.deb ... 150s Unpacking python3-scipy (1.11.4-6) ... 151s Selecting previously unselected package python3-biom-format. 151s Preparing to unpack .../23-python3-biom-format_2.1.15.2-3_ppc64el.deb ... 151s Unpacking python3-biom-format (2.1.15.2-3) ... 151s Selecting previously unselected package autopkgtest-satdep. 151s Preparing to unpack .../24-1-autopkgtest-satdep.deb ... 151s Unpacking autopkgtest-satdep (0) ... 151s Setting up python3-colorama (0.4.6-4) ... 151s Setting up python3-click (8.1.6-1) ... 151s Setting up libaec0:ppc64el (1.1.2-1) ... 151s Setting up python3-decorator (5.1.1-5) ... 152s Setting up libblas3:ppc64el (3.12.0-3) ... 152s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 152s Setting up liblzf1:ppc64el (3.6-4) ... 152s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 152s Setting up python3-dateutil (2.8.2-3) ... 152s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 152s Setting up libsz2:ppc64el (1.1.2-1) ... 152s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 152s Setting up liblapack3:ppc64el (3.12.0-3) ... 152s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 152s Setting up python3-numpy (1:1.24.2-2) ... 154s Setting up libjs-sphinxdoc (7.2.6-4) ... 154s Setting up libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 154s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 154s Setting up libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 154s Setting up python3-scipy (1.11.4-6) ... 157s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 157s Setting up python3-h5py-serial (3.10.0-1ubuntu2) ... 157s Setting up python-biom-format-doc (2.1.15.2-3) ... 157s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 162s Setting up python3-h5py (3.10.0-1ubuntu2) ... 162s Setting up python3-biom-format (2.1.15.2-3) ... 162s Setting up autopkgtest-satdep (0) ... 162s Processing triggers for man-db (2.12.0-3) ... 163s Processing triggers for libc-bin (2.39-0ubuntu2) ... 166s (Reading database ... 74763 files and directories currently installed.) 166s Removing autopkgtest-satdep (0) ... 166s autopkgtest [20:02:34]: test run-unit-test: [----------------------- 167s 167s System information 167s ================== 167s Platform: linux 167s Python version: 3.12.2 (main, Feb 7 2024, 20:47:03) [GCC 13.2.0] 167s Python executable: /usr/bin/python3 167s 167s Dependency versions 167s =================== 167s click version: 8.1.6 167s NumPy version: 1.24.2 167s SciPy version: 1.11.4 167s h5py version: 3.10.0 167s 167s biom-format package information 167s =============================== 167s biom-format version: 2.1.15 167s 168s 168s The input file is a valid BIOM-formatted file. 169s 169s The input file is a valid BIOM-formatted file. 169s 169s The input file is a valid BIOM-formatted file. 170s 170s The input file is a valid BIOM-formatted file. 171s + table=examples/min_sparse_otu_table_hdf5.biom 171s + obsmd=examples/obs_md.txt 171s + [ ! -f examples/min_sparse_otu_table_hdf5.biom ] 171s + biom show-install-info 172s 172s System information 172s ================== 172s Platform: linux 172s Python version: 3.12.2 (main, Feb 7 2024, 20:47:03) [GCC 13.2.0] 172s Python executable: /usr/bin/python3 172s 172s Dependency versions 172s =================== 172s click version: 8.1.6 172s NumPy version: 1.24.2 172s SciPy version: 1.11.4 172s h5py version: 3.10.0 172s 172s biom-format package information 172s =============================== 172s biom-format version: 2.1.15 172s 172s + biom validate-table -i examples/min_sparse_otu_table_hdf5.biom 173s 173s The input file is a valid BIOM-formatted file. 173s + biom add-metadata -i examples/min_sparse_otu_table_hdf5.biom -o test_add_metadata.biom --observation-metadata-fp examples/obs_md.txt --sc-separated taxonomy 174s + biom convert -i examples/min_sparse_otu_table_hdf5.biom -o test_json.biom --to-json 174s + biom convert -i examples/min_sparse_otu_table_hdf5.biom -o test_tsv.txt --to-tsv 175s + biom validate-table -i test_json.biom 176s 176s The input file is a valid BIOM-formatted file. 176s + biom convert -i test_json.biom -o test_hdf5.biom --to-hdf5 176s + biom validate-table -i test_hdf5.biom 177s 177s The input file is a valid BIOM-formatted file. 177s + biom convert -i test_json.biom -o test_tsv.txt --to-tsv 178s + biom convert -i test_tsv.txt -o test_hdf5.biom --to-hdf5 --table-type OTU table 178s + biom validate-table -i test_hdf5.biom 179s 179s The input file is a valid BIOM-formatted file. 179s + biom convert -i test_tsv.txt -o test_json.biom --to-json --table-type OTU table 180s + biom validate-table -i test_json.biom 181s 181s The input file is a valid BIOM-formatted file. 181s + biom head -i examples/min_sparse_otu_table_hdf5.biom 181s # Constructed from biom file 181s #OTU ID Sample1 Sample2 Sample3 Sample4 Sample5 181s GG_OTU_1 0.0 0.0 1.0 0.0 0.0 181s GG_OTU_2 5.0 1.0 0.0 2.0 3.0 181s GG_OTU_3 0.0 0.0 1.0 4.0 0.0 181s GG_OTU_4 2.0 1.0 1.0 0.0 0.0 181s GG_OTU_5 0.0 1.0 1.0 0.0 0.0 181s + biom table-ids -i examples/min_sparse_otu_table_hdf5.biom 182s Sample1 182s Sample2 182s Sample3 182s Sample4 182s Sample5 182s Sample6 182s + biom normalize-table -i examples/min_sparse_otu_table_hdf5.biom -o test_norm.biom -p 183s + cat 183s + biom subset-table -i examples/min_sparse_otu_table_hdf5.biom -o test_subset.biom -a observation -s ids.txt 183s + biom summarize-table -i examples/min_sparse_otu_table_hdf5.biom 184s Num samples: 6 184s Num observations: 5 184s Total count: 27 184s Table density (fraction of non-zero values): 0.500 184s 184s Counts/sample summary: 184s Min: 3.000 184s Max: 7.000 184s Median: 4.000 184s Mean: 4.500 184s Std. dev.: 1.500 184s Sample Metadata Categories: None provided 184s Observation Metadata Categories: None provided 184s 184s Counts/sample detail: 184s Sample2: 3.000 184s Sample5: 3.000 184s Sample3: 4.000 184s Sample6: 4.000 184s Sample4: 6.000 184s Sample1: 7.000 184s + cat 184s + biom from-uc -i uctest -o test_uc.biom 185s If this message was shown, then all commands executed without failure 185s + echo If this message was shown, then all commands executed without failure 185s autopkgtest [20:02:53]: test run-unit-test: -----------------------] 186s autopkgtest [20:02:54]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 186s run-unit-test PASS 186s autopkgtest [20:02:54]: test autodep8-python3: preparing testbed 328s autopkgtest [20:05:16]: testbed dpkg architecture: ppc64el 328s autopkgtest [20:05:16]: testbed apt version: 2.7.12 328s autopkgtest [20:05:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 329s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 329s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [454 kB] 330s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [48.4 kB] 330s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 330s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3020 kB] 331s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [607 kB] 331s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 331s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 331s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 331s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3317 kB] 332s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 332s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [42.8 kB] 332s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 335s Fetched 7625 kB in 4s (2121 kB/s) 335s Reading package lists... 337s Reading package lists... 337s Building dependency tree... 337s Reading state information... 338s Calculating upgrade... 338s The following packages will be REMOVED: 338s libssl3 338s The following NEW packages will be installed: 338s libssl3t64 338s The following packages will be upgraded: 338s dosfstools openssl 338s 2 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 338s Need to get 3297 kB of archives. 338s After this operation, 3072 B disk space will be freed. 338s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu1 [1028 kB] 338s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu1 [2168 kB] 339s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el dosfstools ppc64el 4.2-1.1 [101 kB] 339s Fetched 3297 kB in 1s (3069 kB/s) 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70096 files and directories currently installed.) 339s Preparing to unpack .../openssl_3.0.13-0ubuntu1_ppc64el.deb ... 339s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 339s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 339s wget depends on libssl3 (>= 3.0.0). 339s tnftp depends on libssl3 (>= 3.0.0). 339s tcpdump depends on libssl3 (>= 3.0.0). 339s systemd-resolved depends on libssl3 (>= 3.0.0). 339s systemd depends on libssl3 (>= 3.0.0). 339s sudo depends on libssl3 (>= 3.0.0). 339s rsync depends on libssl3 (>= 3.0.0). 339s python3-cryptography depends on libssl3 (>= 3.0.0). 339s openssh-server depends on libssl3 (>= 3.0.10). 339s openssh-client depends on libssl3 (>= 3.0.10). 339s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 339s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 339s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 339s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 339s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 339s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 339s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 339s libnvme1 depends on libssl3 (>= 3.0.0). 339s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 339s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 339s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 339s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 339s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 339s kmod depends on libssl3 (>= 3.0.0). 339s dhcpcd-base depends on libssl3 (>= 3.0.0). 339s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 339s 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70096 files and directories currently installed.) 339s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 339s Selecting previously unselected package libssl3t64:ppc64el. 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70085 files and directories currently installed.) 339s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_ppc64el.deb ... 339s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu1) ... 339s Preparing to unpack .../dosfstools_4.2-1.1_ppc64el.deb ... 339s Unpacking dosfstools (4.2-1.1) over (4.2-1build3) ... 339s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu1) ... 339s Setting up dosfstools (4.2-1.1) ... 339s Setting up openssl (3.0.13-0ubuntu1) ... 339s Processing triggers for man-db (2.12.0-3) ... 340s Processing triggers for libc-bin (2.39-0ubuntu2) ... 340s Reading package lists... 341s Building dependency tree... 341s Reading state information... 341s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 341s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 341s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 341s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 341s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 343s Reading package lists... 343s Reading package lists... 343s Building dependency tree... 343s Reading state information... 343s Calculating upgrade... 343s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 343s Reading package lists... 344s Building dependency tree... 344s Reading state information... 344s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 348s Reading package lists... 348s Building dependency tree... 349s Reading state information... 349s Starting pkgProblemResolver with broken count: 0 349s Starting 2 pkgProblemResolver with broken count: 0 349s Done 349s The following additional packages will be installed: 349s libaec0 libblas3 libgfortran5 libhdf5-103-1t64 libhdf5-hl-100t64 liblapack3 349s liblbfgsb0 liblzf1 libsz2 python3-all python3-biom-format python3-click 349s python3-colorama python3-dateutil python3-decorator python3-h5py 349s python3-h5py-serial python3-numpy python3-pandas python3-pandas-lib 349s python3-scipy 349s Suggested packages: 349s python-biom-format-doc python-h5py-doc gcc gfortran python3-dev 349s python3-pytest python-pandas-doc python3-statsmodels python-scipy-doc 349s Recommended packages: 349s python3-matplotlib python3-bottleneck python3-numexpr python3-odf 349s python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables 349s g++ | c++-compiler python3-pil 349s The following NEW packages will be installed: 349s autopkgtest-satdep libaec0 libblas3 libgfortran5 libhdf5-103-1t64 349s libhdf5-hl-100t64 liblapack3 liblbfgsb0 liblzf1 libsz2 python3-all 349s python3-biom-format python3-click python3-colorama python3-dateutil 349s python3-decorator python3-h5py python3-h5py-serial python3-numpy 349s python3-pandas python3-pandas-lib python3-scipy 349s 0 upgraded, 22 newly installed, 0 to remove and 0 not upgraded. 349s Need to get 45.4 MB/45.4 MB of archives. 349s After this operation, 256 MB of additional disk space will be used. 349s Get:1 /tmp/autopkgtest.lsuHhA/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [724 B] 349s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el libaec0 ppc64el 1.1.2-1 [29.9 kB] 349s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 350s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 350s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsz2 ppc64el 1.1.2-1 [5472 B] 350s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-3.1ubuntu2 [1395 kB] 350s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-3.1ubuntu2 [70.9 kB] 350s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 351s Get:9 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1 [32.8 kB] 351s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 351s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-all ppc64el 3.12.1-0ubuntu2 [904 B] 351s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 351s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-h5py-serial ppc64el 3.10.0-1ubuntu2 [955 kB] 351s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-h5py all 3.10.0-1ubuntu2 [7980 B] 351s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 351s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-click all 8.1.6-1 [79.0 kB] 351s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB] 352s Get:18 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB] 352s Get:19 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 352s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 352s Get:21 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-scipy ppc64el 1.11.4-6 [21.4 MB] 353s Get:22 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biom-format ppc64el 2.1.15.2-3 [195 kB] 354s Fetched 45.4 MB in 4s (10.5 MB/s) 354s Selecting previously unselected package libaec0:ppc64el. 354s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70097 files and directories currently installed.) 354s Preparing to unpack .../00-libaec0_1.1.2-1_ppc64el.deb ... 354s Unpacking libaec0:ppc64el (1.1.2-1) ... 354s Selecting previously unselected package libblas3:ppc64el. 354s Preparing to unpack .../01-libblas3_3.12.0-3_ppc64el.deb ... 354s Unpacking libblas3:ppc64el (3.12.0-3) ... 354s Selecting previously unselected package libgfortran5:ppc64el. 354s Preparing to unpack .../02-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 354s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libsz2:ppc64el. 354s Preparing to unpack .../03-libsz2_1.1.2-1_ppc64el.deb ... 354s Unpacking libsz2:ppc64el (1.1.2-1) ... 354s Selecting previously unselected package libhdf5-103-1t64:ppc64el. 354s Preparing to unpack .../04-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu2_ppc64el.deb ... 354s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 354s Selecting previously unselected package libhdf5-hl-100t64:ppc64el. 354s Preparing to unpack .../05-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu2_ppc64el.deb ... 354s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 354s Selecting previously unselected package liblapack3:ppc64el. 354s Preparing to unpack .../06-liblapack3_3.12.0-3_ppc64el.deb ... 354s Unpacking liblapack3:ppc64el (3.12.0-3) ... 354s Selecting previously unselected package liblbfgsb0:ppc64el. 354s Preparing to unpack .../07-liblbfgsb0_3.0+dfsg.4-1_ppc64el.deb ... 354s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 354s Selecting previously unselected package liblzf1:ppc64el. 354s Preparing to unpack .../08-liblzf1_3.6-4_ppc64el.deb ... 354s Unpacking liblzf1:ppc64el (3.6-4) ... 354s Selecting previously unselected package python3-all. 354s Preparing to unpack .../09-python3-all_3.12.1-0ubuntu2_ppc64el.deb ... 354s Unpacking python3-all (3.12.1-0ubuntu2) ... 354s Selecting previously unselected package python3-numpy. 354s Preparing to unpack .../10-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 354s Unpacking python3-numpy (1:1.24.2-2) ... 354s Selecting previously unselected package python3-h5py-serial. 354s Preparing to unpack .../11-python3-h5py-serial_3.10.0-1ubuntu2_ppc64el.deb ... 354s Unpacking python3-h5py-serial (3.10.0-1ubuntu2) ... 354s Selecting previously unselected package python3-h5py. 354s Preparing to unpack .../12-python3-h5py_3.10.0-1ubuntu2_all.deb ... 354s Unpacking python3-h5py (3.10.0-1ubuntu2) ... 354s Selecting previously unselected package python3-colorama. 354s Preparing to unpack .../13-python3-colorama_0.4.6-4_all.deb ... 354s Unpacking python3-colorama (0.4.6-4) ... 354s Selecting previously unselected package python3-click. 354s Preparing to unpack .../14-python3-click_8.1.6-1_all.deb ... 354s Unpacking python3-click (8.1.6-1) ... 354s Selecting previously unselected package python3-dateutil. 354s Preparing to unpack .../15-python3-dateutil_2.8.2-3_all.deb ... 354s Unpacking python3-dateutil (2.8.2-3) ... 354s Selecting previously unselected package python3-pandas-lib:ppc64el. 354s Preparing to unpack .../16-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_ppc64el.deb ... 354s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 355s Selecting previously unselected package python3-pandas. 355s Preparing to unpack .../17-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 355s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 355s Selecting previously unselected package python3-decorator. 355s Preparing to unpack .../18-python3-decorator_5.1.1-5_all.deb ... 355s Unpacking python3-decorator (5.1.1-5) ... 355s Selecting previously unselected package python3-scipy. 355s Preparing to unpack .../19-python3-scipy_1.11.4-6_ppc64el.deb ... 355s Unpacking python3-scipy (1.11.4-6) ... 356s Selecting previously unselected package python3-biom-format. 356s Preparing to unpack .../20-python3-biom-format_2.1.15.2-3_ppc64el.deb ... 356s Unpacking python3-biom-format (2.1.15.2-3) ... 356s Selecting previously unselected package autopkgtest-satdep. 356s Preparing to unpack .../21-2-autopkgtest-satdep.deb ... 356s Unpacking autopkgtest-satdep (0) ... 356s Setting up python3-colorama (0.4.6-4) ... 356s Setting up python3-all (3.12.1-0ubuntu2) ... 356s Setting up python3-click (8.1.6-1) ... 356s Setting up libaec0:ppc64el (1.1.2-1) ... 356s Setting up python3-decorator (5.1.1-5) ... 356s Setting up libblas3:ppc64el (3.12.0-3) ... 356s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 356s Setting up liblzf1:ppc64el (3.6-4) ... 356s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 357s Setting up python3-dateutil (2.8.2-3) ... 357s Setting up libsz2:ppc64el (1.1.2-1) ... 357s Setting up liblapack3:ppc64el (3.12.0-3) ... 357s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 357s Setting up python3-numpy (1:1.24.2-2) ... 359s Setting up libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 359s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 359s Setting up libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu2) ... 359s Setting up python3-scipy (1.11.4-6) ... 362s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 362s Setting up python3-h5py-serial (3.10.0-1ubuntu2) ... 362s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 366s Setting up python3-h5py (3.10.0-1ubuntu2) ... 367s Setting up python3-biom-format (2.1.15.2-3) ... 367s Setting up autopkgtest-satdep (0) ... 367s Processing triggers for man-db (2.12.0-3) ... 367s Processing triggers for libc-bin (2.39-0ubuntu2) ... 372s (Reading database ... 74664 files and directories currently installed.) 372s Removing autopkgtest-satdep (0) ... 376s autopkgtest [20:06:04]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import biom; print(biom)" ; done 376s autopkgtest [20:06:04]: test autodep8-python3: [----------------------- 376s Testing with python3.12: 377s 377s autopkgtest [20:06:05]: test autodep8-python3: -----------------------] 378s autodep8-python3 PASS (superficial) 378s autopkgtest [20:06:06]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 378s autopkgtest [20:06:06]: @@@@@@@@@@@@@@@@@@@@ summary 378s run-unit-test PASS 378s autodep8-python3 PASS (superficial) 394s Creating nova instance adt-noble-ppc64el-python-biom-format-20240314-195948-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240314.img (UUID 438daa89-732e-4eab-98ca-4d7eade8166d)... 394s Creating nova instance adt-noble-ppc64el-python-biom-format-20240314-195948-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240314.img (UUID 438daa89-732e-4eab-98ca-4d7eade8166d)...