0s autopkgtest [16:58:23]: starting date and time: 2024-03-23 16:58:23+0000 0s autopkgtest [16:58:23]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [16:58:23]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xrmyh3iu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python3-stdlib-extensions,src:gdbm --apt-upgrade python-ase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-stdlib-extensions/3.12.2-3ubuntu1.1 gdbm/1.23-5.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-25.secgroup --name adt-noble-ppc64el-python-ase-20240323-165823-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 247s autopkgtest [17:02:30]: testbed dpkg architecture: ppc64el 247s autopkgtest [17:02:30]: testbed apt version: 2.7.12 247s autopkgtest [17:02:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 248s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 248s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 248s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 249s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 249s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 249s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 249s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 249s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 249s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 249s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 249s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 249s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 249s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 253s Fetched 9623 kB in 3s (3646 kB/s) 253s Reading package lists... 255s Reading package lists... 256s Building dependency tree... 256s Reading state information... 256s Calculating upgrade... 256s The following packages will be REMOVED: 256s libgdbm6 256s The following NEW packages will be installed: 256s libgdbm6t64 256s The following packages will be upgraded: 256s python3-distutils python3-gdbm python3-lib2to3 256s 3 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 256s Need to get 274 kB of archives. 256s After this operation, 3072 B of additional disk space will be used. 256s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-gdbm ppc64el 3.12.2-3ubuntu1.1 [19.8 kB] 256s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm6t64 ppc64el 1.23-5.1 [41.9 kB] 256s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-distutils all 3.12.2-3ubuntu1.1 [133 kB] 256s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB] 257s Fetched 274 kB in 0s (569 kB/s) 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 257s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_ppc64el.deb ... 257s Unpacking python3-gdbm:ppc64el (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 257s dpkg: libgdbm6:ppc64el: dependency problems, but removing anyway as you requested: 257s man-db depends on libgdbm6 (>= 1.16). 257s libperl5.38:ppc64el depends on libgdbm6 (>= 1.21). 257s libgdbm-compat4:ppc64el depends on libgdbm6 (>= 1.16). 257s 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 257s Removing libgdbm6:ppc64el (1.23-5) ... 257s Selecting previously unselected package libgdbm6t64:ppc64el. 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70151 files and directories currently installed.) 257s Preparing to unpack .../libgdbm6t64_1.23-5.1_ppc64el.deb ... 257s Unpacking libgdbm6t64:ppc64el (1.23-5.1) ... 257s Preparing to unpack .../python3-distutils_3.12.2-3ubuntu1.1_all.deb ... 257s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 257s Preparing to unpack .../python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ... 257s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 257s Setting up libgdbm6t64:ppc64el (1.23-5.1) ... 257s Setting up python3-gdbm:ppc64el (3.12.2-3ubuntu1.1) ... 257s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ... 258s Setting up python3-distutils (3.12.2-3ubuntu1.1) ... 258s python3.12: can't get files for byte-compilation 258s Processing triggers for libc-bin (2.39-0ubuntu6) ... 258s Reading package lists... 258s Building dependency tree... 258s Reading state information... 258s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 259s sh: Attempting to set up Debian/Ubuntu apt sources automatically 259s sh: Distribution appears to be Ubuntu 260s Reading package lists... 260s Building dependency tree... 260s Reading state information... 260s eatmydata is already the newest version (131-1). 260s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 260s Reading package lists... 260s Building dependency tree... 260s Reading state information... 260s dbus is already the newest version (1.14.10-4ubuntu1). 260s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 260s Reading package lists... 261s Building dependency tree... 261s Reading state information... 261s rng-tools-debian is already the newest version (2.4). 261s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 261s Reading package lists... 261s Building dependency tree... 261s Reading state information... 261s The following packages will be REMOVED: 261s cloud-init* python3-configobj* python3-debconf* 261s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 261s After this operation, 3256 kB disk space will be freed. 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 261s Removing cloud-init (24.1.2-0ubuntu1) ... 262s Removing python3-configobj (5.0.8-3) ... 262s Removing python3-debconf (1.5.86) ... 262s Processing triggers for man-db (2.12.0-3) ... 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69768 files and directories currently installed.) 263s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 264s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 264s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 264s invoke-rc.d: policy-rc.d denied execution of try-restart. 264s Reading package lists... 264s Building dependency tree... 264s Reading state information... 264s linux-generic is already the newest version (6.8.0-11.11+1). 264s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 265s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 265s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 265s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 268s Reading package lists... 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 268s Calculating upgrade... 268s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 268s Reading package lists... 268s Building dependency tree... 268s Reading state information... 268s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 269s autopkgtest [17:02:52]: rebooting testbed after setup commands that affected boot 317s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 324s autopkgtest [17:03:47]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 327s autopkgtest [17:03:50]: @@@@@@@@@@@@@@@@@@@@ apt-source python-ase 331s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-ase 3.22.1-4 (dsc) [2586 B] 331s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-ase 3.22.1-4 (tar) [2837 kB] 331s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-ase 3.22.1-4 (diff) [15.4 kB] 331s gpgv: Signature made Sun Jan 7 11:26:42 2024 UTC 331s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 331s gpgv: Can't check signature: No public key 331s dpkg-source: warning: cannot verify inline signature for ./python-ase_3.22.1-4.dsc: no acceptable signature found 331s dpkg-source: warning: diff 'src/debian/patches/2629.patch' patches file src/ase/optimize/test/systems.py more than once 331s autopkgtest [17:03:54]: testing package python-ase version 3.22.1-4 331s autopkgtest [17:03:54]: build not needed 334s autopkgtest [17:03:57]: test command1: preparing testbed 337s Reading package lists... 337s Building dependency tree... 337s Reading state information... 337s Starting pkgProblemResolver with broken count: 0 337s Starting 2 pkgProblemResolver with broken count: 0 337s Done 337s The following additional packages will be installed: 337s ase blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono 337s fonts-font-awesome fonts-glyphicons-halflings fonts-lyx libaec0 libblas3 337s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 337s libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libimagequant0 libjbig0 337s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery libjs-jquery-ui 337s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libnetcdf19 libopenjp2-7 337s libqhull-r8.0 libraqm0 libsharpyuv0 libsymspg2 libsz2 libtcl8.6 libtiff6 337s libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 libxslt1.1 337s libxss1 python-matplotlib-data python3-all python3-appdirs python3-ase 338s python3-brotli python3-cftime python3-contourpy python3-cycler 338s python3-dateutil python3-decorator python3-fonttools python3-fs 338s python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 338s python3-matplotlib python3-mpmath python3-netcdf4 python3-numpy 338s python3-packaging python3-pil python3-pil.imagetk python3-pluggy 338s python3-pycodcif python3-pytest python3-pytest-mock python3-scipy 338s python3-spglib python3-sympy python3-tk python3-ufolib2 python3-unicodedata2 338s tk8.6-blt2.5 unicode-data x11-common 338s Suggested packages: 338s python-ase-doc blt-demo libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 338s python-cycler-doc python-lxml-doc cm-super-minimal dvipng ffmpeg 338s fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common 338s python3-cairocffi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip 338s python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc 338s python3-gmpy2 gcc gfortran python3-dev python-pil-doc python-pytest-mock-doc 338s python-scipy-doc texlive-fonts-extra python-sympy-doc tix python3-tk-dbg 338s Recommended packages: 338s javascript-common python3-bs4 python3-cssselect python3-html5lib 338s python3-olefile g++ | c++-compiler isympy-common 338s The following NEW packages will be installed: 338s ase autopkgtest-satdep blt fontconfig-config fonts-dejavu-core 338s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings fonts-lyx 338s libaec0 libblas3 libdeflate0 libfontconfig1 libgfortran5 libgomp1 338s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libimagequant0 338s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-jquery 338s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libnetcdf19 338s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libsymspg2 libsz2 libtcl8.6 338s libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxft2 libxrender1 338s libxslt1.1 libxss1 python-matplotlib-data python3-all python3-appdirs 338s python3-ase python3-brotli python3-cftime python3-contourpy python3-cycler 338s python3-dateutil python3-decorator python3-fonttools python3-fs 338s python3-iniconfig python3-kiwisolver python3-lxml python3-lz4 338s python3-matplotlib python3-mpmath python3-netcdf4 python3-numpy 338s python3-packaging python3-pil python3-pil.imagetk python3-pluggy 338s python3-pycodcif python3-pytest python3-pytest-mock python3-scipy 338s python3-spglib python3-sympy python3-tk python3-ufolib2 python3-unicodedata2 338s tk8.6-blt2.5 unicode-data x11-common 338s 0 upgraded, 83 newly installed, 0 to remove and 0 not upgraded. 338s Need to get 75.3 MB/75.3 MB of archives. 338s After this operation, 363 MB of additional disk space will be used. 338s Get:1 /tmp/autopkgtest.0EsBeB/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [744 B] 338s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 338s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 338s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 338s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 338s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 339s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 339s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 339s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 339s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 340s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 340s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1 [32.8 kB] 340s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-scipy ppc64el 1.11.4-6 [21.4 MB] 342s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsymspg2 ppc64el 2.2.0-3 [232 kB] 342s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-spglib ppc64el 2.2.0-3 [28.4 kB] 342s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 342s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 342s Get:18 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-lyx all 2.4.0~RC3-1 [170 kB] 342s Get:19 http://ftpmaster.internal/ubuntu noble/universe ppc64el python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 342s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB] 342s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 342s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB] 342s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 342s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 342s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] 342s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB] 342s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 342s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 342s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB] 342s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 342s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 342s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 342s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 342s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 342s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 342s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB] 342s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB] 342s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB] 342s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB] 342s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 342s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 342s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 342s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB] 342s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 342s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B] 342s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.14-1 [944 kB] 342s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7 [778 kB] 342s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el blt ppc64el 2.5.3+dfsg-7 [4832 B] 342s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-tk ppc64el 3.11.5-1 [116 kB] 342s Get:50 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pil.imagetk ppc64el 10.2.0-1 [10.1 kB] 342s Get:51 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-contourpy ppc64el 1.0.7-1build2 [300 kB] 342s Get:52 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cycler all 0.11.0-2 [8202 B] 342s Get:53 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-brotli ppc64el 1.1.0-2 [420 kB] 342s Get:54 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 342s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mpmath all 1.2.1-3 [421 kB] 342s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-sympy all 1.12-7 [3966 kB] 342s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 342s Get:58 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fs all 2.4.16-3 [91.1 kB] 342s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1 [192 kB] 342s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-lxml ppc64el 5.1.0-1 [2191 kB] 342s Get:61 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build2 [28.8 kB] 342s Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1 [368 kB] 342s Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-all ppc64el 3.12.1-0ubuntu2 [904 B] 342s Get:64 http://ftpmaster.internal/ubuntu noble/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 343s Get:65 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fonttools ppc64el 4.46.0-1 [1746 kB] 343s Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-kiwisolver ppc64el 1.4.4-2 [55.8 kB] 343s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 23.2-1 [40.6 kB] 343s Get:68 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6 [220 kB] 343s Get:69 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-matplotlib ppc64el 3.6.3-1ubuntu3 [7651 kB] 343s Get:70 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ase all 3.22.1-4 [1405 kB] 343s Get:71 http://ftpmaster.internal/ubuntu noble/universe ppc64el ase all 3.22.1-4 [31.3 kB] 343s Get:72 http://ftpmaster.internal/ubuntu noble/universe ppc64el libaec0 ppc64el 1.1.2-1 [29.9 kB] 343s Get:73 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsz2 ppc64el 1.1.2-1 [5472 B] 343s Get:74 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhdf5-103-1 ppc64el 1.10.10+repack-3ubuntu1 [1375 kB] 343s Get:75 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhdf5-hl-100 ppc64el 1.10.10+repack-3ubuntu1 [69.9 kB] 343s Get:76 http://ftpmaster.internal/ubuntu noble/universe ppc64el libnetcdf19 ppc64el 1:4.9.2-3ubuntu1 [597 kB] 343s Get:77 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cftime ppc64el 1.6.3-1build1 [383 kB] 343s Get:78 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 343s Get:79 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-netcdf4 ppc64el 1.6.5-1build1 [969 kB] 343s Get:80 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pluggy all 1.4.0-1 [20.4 kB] 343s Get:81 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pycodcif ppc64el 3.8.1+dfsg-1build1 [89.9 kB] 343s Get:82 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pytest all 7.4.4-1 [305 kB] 343s Get:83 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pytest-mock all 3.12.0-1.1 [11.3 kB] 343s Fetched 75.3 MB in 6s (13.7 MB/s) 343s Selecting previously unselected package fonts-font-awesome. 344s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69713 files and directories currently installed.) 344s Preparing to unpack .../00-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 344s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 344s Selecting previously unselected package fonts-glyphicons-halflings. 344s Preparing to unpack .../01-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 344s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 344s Selecting previously unselected package libjs-bootstrap. 344s Preparing to unpack .../02-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 344s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 344s Selecting previously unselected package libjs-jquery. 344s Preparing to unpack .../03-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 344s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 344s Selecting previously unselected package libjs-jquery-ui. 344s Preparing to unpack .../04-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 344s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 344s Selecting previously unselected package libblas3:ppc64el. 344s Preparing to unpack .../05-libblas3_3.12.0-3_ppc64el.deb ... 344s Unpacking libblas3:ppc64el (3.12.0-3) ... 344s Selecting previously unselected package libgfortran5:ppc64el. 344s Preparing to unpack .../06-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 344s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 344s Selecting previously unselected package liblapack3:ppc64el. 344s Preparing to unpack .../07-liblapack3_3.12.0-3_ppc64el.deb ... 344s Unpacking liblapack3:ppc64el (3.12.0-3) ... 344s Selecting previously unselected package python3-numpy. 344s Preparing to unpack .../08-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 344s Unpacking python3-numpy (1:1.24.2-2) ... 344s Selecting previously unselected package python3-decorator. 344s Preparing to unpack .../09-python3-decorator_5.1.1-5_all.deb ... 344s Unpacking python3-decorator (5.1.1-5) ... 344s Selecting previously unselected package liblbfgsb0:ppc64el. 344s Preparing to unpack .../10-liblbfgsb0_3.0+dfsg.4-1_ppc64el.deb ... 344s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 344s Selecting previously unselected package python3-scipy. 344s Preparing to unpack .../11-python3-scipy_1.11.4-6_ppc64el.deb ... 344s Unpacking python3-scipy (1.11.4-6) ... 345s Selecting previously unselected package libsymspg2:ppc64el. 345s Preparing to unpack .../12-libsymspg2_2.2.0-3_ppc64el.deb ... 345s Unpacking libsymspg2:ppc64el (2.2.0-3) ... 345s Selecting previously unselected package python3-spglib. 345s Preparing to unpack .../13-python3-spglib_2.2.0-3_ppc64el.deb ... 345s Unpacking python3-spglib (2.2.0-3) ... 345s Selecting previously unselected package fonts-dejavu-mono. 345s Preparing to unpack .../14-fonts-dejavu-mono_2.37-8_all.deb ... 345s Unpacking fonts-dejavu-mono (2.37-8) ... 345s Selecting previously unselected package fonts-dejavu-core. 345s Preparing to unpack .../15-fonts-dejavu-core_2.37-8_all.deb ... 345s Unpacking fonts-dejavu-core (2.37-8) ... 345s Selecting previously unselected package fonts-lyx. 345s Preparing to unpack .../16-fonts-lyx_2.4.0~RC3-1_all.deb ... 345s Unpacking fonts-lyx (2.4.0~RC3-1) ... 345s Selecting previously unselected package python-matplotlib-data. 345s Preparing to unpack .../17-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 345s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 345s Selecting previously unselected package python3-dateutil. 345s Preparing to unpack .../18-python3-dateutil_2.8.2-3_all.deb ... 345s Unpacking python3-dateutil (2.8.2-3) ... 345s Selecting previously unselected package libgomp1:ppc64el. 345s Preparing to unpack .../19-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 345s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 345s Selecting previously unselected package libimagequant0:ppc64el. 345s Preparing to unpack .../20-libimagequant0_2.18.0-1_ppc64el.deb ... 345s Unpacking libimagequant0:ppc64el (2.18.0-1) ... 346s Selecting previously unselected package libjpeg-turbo8:ppc64el. 346s Preparing to unpack .../21-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 346s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 346s Selecting previously unselected package libjpeg8:ppc64el. 346s Preparing to unpack .../22-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 346s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 346s Selecting previously unselected package liblcms2-2:ppc64el. 346s Preparing to unpack .../23-liblcms2-2_2.14-2_ppc64el.deb ... 346s Unpacking liblcms2-2:ppc64el (2.14-2) ... 346s Selecting previously unselected package libopenjp2-7:ppc64el. 346s Preparing to unpack .../24-libopenjp2-7_2.5.0-2_ppc64el.deb ... 346s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ... 346s Selecting previously unselected package libgraphite2-3:ppc64el. 346s Preparing to unpack .../25-libgraphite2-3_1.3.14-2_ppc64el.deb ... 346s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 346s Selecting previously unselected package libharfbuzz0b:ppc64el. 346s Preparing to unpack .../26-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 346s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 346s Selecting previously unselected package libraqm0:ppc64el. 346s Preparing to unpack .../27-libraqm0_0.10.1-1_ppc64el.deb ... 346s Unpacking libraqm0:ppc64el (0.10.1-1) ... 346s Selecting previously unselected package libdeflate0:ppc64el. 346s Preparing to unpack .../28-libdeflate0_1.19-1_ppc64el.deb ... 346s Unpacking libdeflate0:ppc64el (1.19-1) ... 346s Selecting previously unselected package libjbig0:ppc64el. 346s Preparing to unpack .../29-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 346s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 346s Selecting previously unselected package liblerc4:ppc64el. 346s Preparing to unpack .../30-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 346s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 346s Selecting previously unselected package libsharpyuv0:ppc64el. 346s Preparing to unpack .../31-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 346s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 346s Selecting previously unselected package libwebp7:ppc64el. 346s Preparing to unpack .../32-libwebp7_1.3.2-0.4_ppc64el.deb ... 346s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 346s Selecting previously unselected package libtiff6:ppc64el. 346s Preparing to unpack .../33-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 346s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 346s Selecting previously unselected package libwebpdemux2:ppc64el. 346s Preparing to unpack .../34-libwebpdemux2_1.3.2-0.4_ppc64el.deb ... 346s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ... 346s Selecting previously unselected package libwebpmux3:ppc64el. 346s Preparing to unpack .../35-libwebpmux3_1.3.2-0.4_ppc64el.deb ... 346s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ... 346s Selecting previously unselected package python3-pil:ppc64el. 346s Preparing to unpack .../36-python3-pil_10.2.0-1_ppc64el.deb ... 346s Unpacking python3-pil:ppc64el (10.2.0-1) ... 346s Selecting previously unselected package libtcl8.6:ppc64el. 346s Preparing to unpack .../37-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ... 346s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ... 346s Selecting previously unselected package fontconfig-config. 346s Preparing to unpack .../38-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 346s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 346s Selecting previously unselected package libfontconfig1:ppc64el. 346s Preparing to unpack .../39-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 346s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 346s Selecting previously unselected package libxrender1:ppc64el. 346s Preparing to unpack .../40-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 346s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 346s Selecting previously unselected package libxft2:ppc64el. 346s Preparing to unpack .../41-libxft2_2.3.6-1_ppc64el.deb ... 346s Unpacking libxft2:ppc64el (2.3.6-1) ... 346s Selecting previously unselected package x11-common. 346s Preparing to unpack .../42-x11-common_1%3a7.7+23ubuntu2_all.deb ... 346s Unpacking x11-common (1:7.7+23ubuntu2) ... 346s Selecting previously unselected package libxss1:ppc64el. 346s Preparing to unpack .../43-libxss1_1%3a1.2.3-1build2_ppc64el.deb ... 346s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ... 346s Selecting previously unselected package libtk8.6:ppc64el. 346s Preparing to unpack .../44-libtk8.6_8.6.14-1_ppc64el.deb ... 346s Unpacking libtk8.6:ppc64el (8.6.14-1) ... 346s Selecting previously unselected package tk8.6-blt2.5. 346s Preparing to unpack .../45-tk8.6-blt2.5_2.5.3+dfsg-7_ppc64el.deb ... 346s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 346s Selecting previously unselected package blt. 346s Preparing to unpack .../46-blt_2.5.3+dfsg-7_ppc64el.deb ... 346s Unpacking blt (2.5.3+dfsg-7) ... 346s Selecting previously unselected package python3-tk:ppc64el. 346s Preparing to unpack .../47-python3-tk_3.11.5-1_ppc64el.deb ... 346s Unpacking python3-tk:ppc64el (3.11.5-1) ... 346s Selecting previously unselected package python3-pil.imagetk:ppc64el. 346s Preparing to unpack .../48-python3-pil.imagetk_10.2.0-1_ppc64el.deb ... 346s Unpacking python3-pil.imagetk:ppc64el (10.2.0-1) ... 346s Selecting previously unselected package python3-contourpy. 346s Preparing to unpack .../49-python3-contourpy_1.0.7-1build2_ppc64el.deb ... 346s Unpacking python3-contourpy (1.0.7-1build2) ... 346s Selecting previously unselected package python3-cycler. 346s Preparing to unpack .../50-python3-cycler_0.11.0-2_all.deb ... 346s Unpacking python3-cycler (0.11.0-2) ... 346s Selecting previously unselected package python3-brotli. 346s Preparing to unpack .../51-python3-brotli_1.1.0-2_ppc64el.deb ... 346s Unpacking python3-brotli (1.1.0-2) ... 346s Selecting previously unselected package python3-ufolib2. 346s Preparing to unpack .../52-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 346s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 346s Selecting previously unselected package python3-mpmath. 346s Preparing to unpack .../53-python3-mpmath_1.2.1-3_all.deb ... 346s Unpacking python3-mpmath (1.2.1-3) ... 346s Selecting previously unselected package python3-sympy. 346s Preparing to unpack .../54-python3-sympy_1.12-7_all.deb ... 346s Unpacking python3-sympy (1.12-7) ... 347s Selecting previously unselected package python3-appdirs. 347s Preparing to unpack .../55-python3-appdirs_1.4.4-4_all.deb ... 347s Unpacking python3-appdirs (1.4.4-4) ... 347s Selecting previously unselected package python3-fs. 347s Preparing to unpack .../56-python3-fs_2.4.16-3_all.deb ... 347s Unpacking python3-fs (2.4.16-3) ... 347s Selecting previously unselected package libxslt1.1:ppc64el. 347s Preparing to unpack .../57-libxslt1.1_1.1.39-0exp1_ppc64el.deb ... 347s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1) ... 347s Selecting previously unselected package python3-lxml:ppc64el. 347s Preparing to unpack .../58-python3-lxml_5.1.0-1_ppc64el.deb ... 347s Unpacking python3-lxml:ppc64el (5.1.0-1) ... 347s Selecting previously unselected package python3-lz4. 347s Preparing to unpack .../59-python3-lz4_4.0.2+dfsg-1build2_ppc64el.deb ... 347s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 347s Selecting previously unselected package python3-unicodedata2. 347s Preparing to unpack .../60-python3-unicodedata2_15.1.0+ds-1_ppc64el.deb ... 347s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 347s Selecting previously unselected package python3-all. 347s Preparing to unpack .../61-python3-all_3.12.1-0ubuntu2_ppc64el.deb ... 347s Unpacking python3-all (3.12.1-0ubuntu2) ... 347s Selecting previously unselected package unicode-data. 347s Preparing to unpack .../62-unicode-data_15.1.0-1_all.deb ... 347s Unpacking unicode-data (15.1.0-1) ... 347s Selecting previously unselected package python3-fonttools. 347s Preparing to unpack .../63-python3-fonttools_4.46.0-1_ppc64el.deb ... 347s Unpacking python3-fonttools (4.46.0-1) ... 348s Selecting previously unselected package python3-kiwisolver. 348s Preparing to unpack .../64-python3-kiwisolver_1.4.4-2_ppc64el.deb ... 348s Unpacking python3-kiwisolver (1.4.4-2) ... 348s Selecting previously unselected package python3-packaging. 348s Preparing to unpack .../65-python3-packaging_23.2-1_all.deb ... 348s Unpacking python3-packaging (23.2-1) ... 348s Selecting previously unselected package libqhull-r8.0:ppc64el. 348s Preparing to unpack .../66-libqhull-r8.0_2020.2-6_ppc64el.deb ... 348s Unpacking libqhull-r8.0:ppc64el (2020.2-6) ... 348s Selecting previously unselected package python3-matplotlib. 348s Preparing to unpack .../67-python3-matplotlib_3.6.3-1ubuntu3_ppc64el.deb ... 348s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 348s Selecting previously unselected package python3-ase. 348s Preparing to unpack .../68-python3-ase_3.22.1-4_all.deb ... 348s Unpacking python3-ase (3.22.1-4) ... 348s Selecting previously unselected package ase. 348s Preparing to unpack .../69-ase_3.22.1-4_all.deb ... 348s Unpacking ase (3.22.1-4) ... 348s Selecting previously unselected package libaec0:ppc64el. 348s Preparing to unpack .../70-libaec0_1.1.2-1_ppc64el.deb ... 348s Unpacking libaec0:ppc64el (1.1.2-1) ... 348s Selecting previously unselected package libsz2:ppc64el. 348s Preparing to unpack .../71-libsz2_1.1.2-1_ppc64el.deb ... 348s Unpacking libsz2:ppc64el (1.1.2-1) ... 348s Selecting previously unselected package libhdf5-103-1:ppc64el. 348s Preparing to unpack .../72-libhdf5-103-1_1.10.10+repack-3ubuntu1_ppc64el.deb ... 348s Unpacking libhdf5-103-1:ppc64el (1.10.10+repack-3ubuntu1) ... 348s Selecting previously unselected package libhdf5-hl-100:ppc64el. 348s Preparing to unpack .../73-libhdf5-hl-100_1.10.10+repack-3ubuntu1_ppc64el.deb ... 348s Unpacking libhdf5-hl-100:ppc64el (1.10.10+repack-3ubuntu1) ... 348s Selecting previously unselected package libnetcdf19:ppc64el. 348s Preparing to unpack .../74-libnetcdf19_1%3a4.9.2-3ubuntu1_ppc64el.deb ... 348s Unpacking libnetcdf19:ppc64el (1:4.9.2-3ubuntu1) ... 348s Selecting previously unselected package python3-cftime. 348s Preparing to unpack .../75-python3-cftime_1.6.3-1build1_ppc64el.deb ... 348s Unpacking python3-cftime (1.6.3-1build1) ... 348s Selecting previously unselected package python3-iniconfig. 348s Preparing to unpack .../76-python3-iniconfig_1.1.1-2_all.deb ... 348s Unpacking python3-iniconfig (1.1.1-2) ... 348s Selecting previously unselected package python3-netcdf4. 348s Preparing to unpack .../77-python3-netcdf4_1.6.5-1build1_ppc64el.deb ... 348s Unpacking python3-netcdf4 (1.6.5-1build1) ... 348s Selecting previously unselected package python3-pluggy. 348s Preparing to unpack .../78-python3-pluggy_1.4.0-1_all.deb ... 348s Unpacking python3-pluggy (1.4.0-1) ... 348s Selecting previously unselected package python3-pycodcif. 348s Preparing to unpack .../79-python3-pycodcif_3.8.1+dfsg-1build1_ppc64el.deb ... 348s Unpacking python3-pycodcif (3.8.1+dfsg-1build1) ... 348s Selecting previously unselected package python3-pytest. 348s Preparing to unpack .../80-python3-pytest_7.4.4-1_all.deb ... 348s Unpacking python3-pytest (7.4.4-1) ... 348s Selecting previously unselected package python3-pytest-mock. 348s Preparing to unpack .../81-python3-pytest-mock_3.12.0-1.1_all.deb ... 348s Unpacking python3-pytest-mock (3.12.0-1.1) ... 348s Selecting previously unselected package autopkgtest-satdep. 348s Preparing to unpack .../82-1-autopkgtest-satdep.deb ... 348s Unpacking autopkgtest-satdep (0) ... 348s Setting up libgraphite2-3:ppc64el (1.3.14-2) ... 348s Setting up liblcms2-2:ppc64el (2.14-2) ... 348s Setting up python3-iniconfig (1.1.1-2) ... 349s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ... 349s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 349s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ... 349s Setting up python3-lz4 (4.0.2+dfsg-1build2) ... 349s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 349s Setting up python3-unicodedata2 (15.1.0+ds-1) ... 349s Setting up fonts-lyx (2.4.0~RC3-1) ... 349s Setting up x11-common (1:7.7+23ubuntu2) ... 349s Setting up libdeflate0:ppc64el (1.19-1) ... 349s Setting up libqhull-r8.0:ppc64el (2020.2-6) ... 349s Setting up python3-all (3.12.1-0ubuntu2) ... 349s Setting up python3-pycodcif (3.8.1+dfsg-1build1) ... 349s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ... 349s Setting up libjbig0:ppc64el 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(2.3.6-1) ... 361s Setting up python3-scipy (1.11.4-6) ... 365s Setting up libtk8.6:ppc64el (8.6.14-1) ... 365s Setting up python3-pil:ppc64el (10.2.0-1) ... 365s Setting up python3-cftime (1.6.3-1build1) ... 365s Setting up libnetcdf19:ppc64el (1:4.9.2-3ubuntu1) ... 365s Setting up python3-netcdf4 (1.6.5-1build1) ... 365s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... 365s Setting up blt (2.5.3+dfsg-7) ... 365s Setting up python3-tk:ppc64el (3.11.5-1) ... 366s Setting up python3-pil.imagetk:ppc64el (10.2.0-1) ... 366s Setting up python3-fonttools (4.46.0-1) ... 367s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 367s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 369s Setting up python3-ase (3.22.1-4) ... 370s Setting up ase (3.22.1-4) ... 370s Setting up autopkgtest-satdep (0) ... 371s Processing triggers for libc-bin (2.39-0ubuntu6) ... 371s Processing triggers for man-db (2.12.0-3) ... 375s (Reading database ... 78304 files and directories currently installed.) 375s Removing autopkgtest-satdep (0) ... 375s autopkgtest [17:04:38]: test command1: for py in $(py3versions -d); do cd "$AUTOPKGTEST_TMP"; $py -m ase test; done 375s autopkgtest [17:04:38]: test command1: [----------------------- 376s About to run pytest with these parameters: 376s -v 376s ============================= test session starts ============================== 376s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.12 376s 376s Libraries 376s ========= 376s 376s ase-3.22.1 /usr/lib/python3/dist-packages/ase 376s numpy-1.24.2 /usr/lib/python3/dist-packages/numpy 376s scipy-1.11.4 /usr/lib/python3/dist-packages/scipy 376s matplotlib-3.6.3 /usr/lib/python3/dist-packages/matplotlib 376s spglib-2.2.0 /usr/lib/python3/dist-packages/spglib 376s ase_ext not installed 376s flask not installed 376s psycopg2 not installed 376s pyamg not installed 376s 376s 376s Calculators 376s =========== 376s Config: No configuration file specified 376s Datafiles: ase-datafiles package not installed 376s 376s [ ] abinit not installed 376s [ ] aims not installed 376s [ ] asap not installed 376s [ ] castep not installed 376s [ ] cp2k not installed 376s [ ] dftb not installed 376s [ ] dftd3 not installed 376s [ ] elk not installed 376s [ ] espresso not installed 376s [ ] exciting not installed 376s [ ] gpaw not installed 376s [ ] gromacs not installed 376s [ ] lammpslib not installed 376s [ ] lammpsrun not installed 376s [ ] nwchem not installed 376s [ ] octopus not installed 376s [ ] openmx not installed 376s [ ] siesta not installed 376s [ ] vasp not installed 376s 376s * Use --calculators option to select calculators. 376s 376s * See "ase test --help-calculators" on how to configure calculators. 376s 376s * This listing only includes external calculators known by the test 376s system. Others are "configured" by setting an environment variable 376s like "ASE_xxx_COMMAND" in order to allow tests to run. Please see 376s the documentation of that individual calculator. 376s 376s 376s rootdir: /usr/lib/python3/dist-packages/ase/test 376s configfile: pytest.ini 376s plugins: mock-3.12.0 381s collecting ... collected 1963 items 381s 381s test_analysis.py::test_analysis PASSED [ 0%] 381s test_bader.py::test_bader PASSED [ 0%] 381s test_bandgap.py::test_bandgap PASSED [ 0%] 381s test_bandpath_kpts_axis.py::test_bandpath_kpts_axis PASSED [ 0%] 386s test_basin.py::test_basin PASSED [ 0%] 386s test_calc_outputs_big.py::test_properties_big PASSED [ 0%] 386s test_calc_properties.py::test_print_props[natoms] PASSED [ 0%] 386s test_calc_properties.py::test_print_props[energy] PASSED [ 0%] 386s test_calc_properties.py::test_print_props[energies] PASSED [ 0%] 386s test_calc_properties.py::test_print_props[free_energy] PASSED [ 0%] 386s test_calc_properties.py::test_print_props[forces] PASSED [ 0%] 386s test_calc_properties.py::test_print_props[stress] PASSED [ 0%] 386s 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[ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b0-a1] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b0-a2] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b0-a3] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b1-a0] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b1-a1] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b1-a2] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b1-a3] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b2-a0] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b2-a1] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b2-a2] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b2-a3] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b3-a0] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b3-a1] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b3-a2] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[0-1e-08-b3-a3] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b0-a0] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b0-a1] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b0-a2] PASSED [ 8%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b0-a3] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b1-a0] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b1-a1] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b1-a2] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b1-a3] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b2-a0] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b2-a1] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b2-a2] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b2-a3] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b3-a0] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b3-a1] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b3-a2] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-None-b3-a3] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b0-a0] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b0-a1] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b0-a2] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b0-a3] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b1-a0] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b1-a1] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b1-a2] PASSED [ 9%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b1-a3] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b2-a0] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b2-a1] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b2-a2] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b2-a3] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b3-a0] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b3-a1] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b3-a2] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-0-b3-a3] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b0-a0] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b0-a1] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b0-a2] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b0-a3] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b1-a0] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b1-a1] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b1-a2] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b1-a3] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b2-a0] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b2-a1] PASSED [ 10%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b2-a2] PASSED [ 11%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b2-a3] PASSED [ 11%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b3-a0] PASSED [ 11%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b3-a1] PASSED [ 11%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b3-a2] PASSED [ 11%] 386s test_calculator_equal.py::test_array_equal[1e-08-1e-08-b3-a3] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[None-2e-08-b0-a0] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[None-2e-08-b0-a1] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[None-2e-08-b1-a0] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[None-2e-08-b1-a1] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[0-2e-08-b0-a0] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[0-2e-08-b0-a1] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[0-2e-08-b1-a0] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[0-2e-08-b1-a1] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[1e-08-None-b0-a0] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[1e-08-None-b0-a1] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[1e-08-None-b1-a0] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[1e-08-None-b1-a1] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[1e-08-0-b0-a0] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[1e-08-0-b0-a1] PASSED [ 11%] 386s test_calculator_equal.py::test_array_almost_equal[1e-08-0-b1-a0] PASSED [ 12%] 386s test_calculator_equal.py::test_array_almost_equal[1e-08-0-b1-a1] PASSED [ 12%] 386s test_calculator_equal.py::test_array_almost_equal[5e-09-1e-08-b0-a0] PASSED [ 12%] 386s test_calculator_equal.py::test_array_almost_equal[5e-09-1e-08-b0-a1] PASSED [ 12%] 386s test_calculator_equal.py::test_array_almost_equal[5e-09-1e-08-b1-a0] PASSED [ 12%] 386s test_calculator_equal.py::test_array_almost_equal[5e-09-1e-08-b1-a1] PASSED [ 12%] 386s test_calculator_equal.py::test_array_not_equal[None-None-b0-a0] PASSED [ 12%] 386s 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test_calculator_equal.py::test_array_not_equal[0-None-b0-a1] PASSED [ 12%] 387s test_calculator_equal.py::test_array_not_equal[0-None-b1-a0] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[0-None-b1-a1] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[0-0-b0-a0] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[0-0-b0-a1] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[0-0-b1-a0] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[0-0-b1-a1] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[0-1e-08-b0-a0] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[0-1e-08-b0-a1] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[0-1e-08-b1-a0] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[0-1e-08-b1-a1] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-None-b0-a0] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-None-b0-a1] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-None-b1-a0] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-None-b1-a1] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-0-b0-a0] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-0-b0-a1] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-0-b1-a0] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-0-b1-a1] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-1e-08-b0-a0] PASSED [ 13%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-1e-08-b0-a1] PASSED [ 14%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-1e-08-b1-a0] PASSED [ 14%] 387s test_calculator_equal.py::test_array_not_equal[1e-08-1e-08-b1-a1] PASSED [ 14%] 387s test_calculator_label.py::test_calculator_label PASSED [ 14%] 387s test_checkpoint.py::test_sqlite PASSED [ 14%] 387s test_checkpoint.py::test_new_style_interface PASSED [ 14%] 387s test_cluster.py::test_icosa[1] PASSED [ 14%] 387s test_cluster.py::test_icosa[2] PASSED [ 14%] 387s test_cluster.py::test_icosa[3] PASSED [ 14%] 387s test_cluster.py::test_icosa[4] PASSED [ 14%] 387s test_cluster.py::test_icosa[5] PASSED [ 14%] 387s test_cluster.py::test_icosa[6] PASSED [ 14%] 387s test_cluster.py::test_regular_octahedron[1] PASSED [ 14%] 387s test_cluster.py::test_regular_octahedron[2] PASSED [ 14%] 387s test_cluster.py::test_regular_octahedron[3] PASSED [ 14%] 387s test_cluster.py::test_regular_octahedron[4] PASSED [ 14%] 387s test_cluster.py::test_regular_octahedron[5] PASSED [ 14%] 387s test_cluster.py::test_regular_octahedron[6] PASSED [ 14%] 388s test_cluster.py::test_regular_octahedron[7] PASSED [ 14%] 388s test_cluster.py::test_cuboctahedron[1] PASSED [ 14%] 388s test_cluster.py::test_cuboctahedron[2] PASSED [ 15%] 388s test_cluster.py::test_cuboctahedron[3] PASSED [ 15%] 388s test_cluster.py::test_cuboctahedron[4] PASSED [ 15%] 388s test_cluster.py::test_cuboctahedron[5] PASSED [ 15%] 388s test_cluster.py::test_cuboctahedron[6] PASSED [ 15%] 389s test_cluster.py::test_decahedron PASSED [ 15%] 389s test_cluster.py::test_smallest_decahedron PASSED [ 15%] 389s test_cluster.py::test_centering[cluster0] PASSED [ 15%] 389s test_cluster.py::test_centering[cluster1] PASSED [ 15%] 389s test_cluster.py::test_centering[cluster2] PASSED [ 15%] 389s test_cutoffs.py::test_cutoffs PASSED [ 15%] 389s test_diffusion_coefficient.py::test_atom PASSED [ 15%] 389s test_diffusion_coefficient.py::test_co_molecule PASSED [ 15%] 389s test_dimensionality.py::test_mx2[TSA] PASSED [ 15%] 389s test_dimensionality.py::test_mx2[RDA] PASSED [ 15%] 389s test_dimensionality.py::test_fcc[TSA] PASSED [ 15%] 389s test_dimensionality.py::test_fcc[RDA] PASSED [ 15%] 389s test_dimensionality.py::test_isolation_0D[None] PASSED [ 15%] 389s 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bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[TRI2a] PASSED [ 34%] 417s bandstructure/test_bandstructure_many.py::test_lattice_bandstructure[TRI2b] PASSED [ 34%] 417s bandstructure/test_bandstructure_transform_mcl.py::test_bandstructure_transform_mcl PASSED [ 34%] 417s bandstructure/test_resolve_custom_kpoints.py::test_str PASSED [ 34%] 417s bandstructure/test_resolve_custom_kpoints.py::test_recognize_points_from_coords PASSED [ 34%] 417s bandstructure/test_resolve_custom_kpoints.py::test_autolabel_points_from_coords[kptcoords0] PASSED [ 34%] 417s bandstructure/test_resolve_custom_kpoints.py::test_autolabel_points_from_coords[kptcoords1] PASSED [ 34%] 417s bandstructure/test_resolve_custom_kpoints.py::test_bad_shape PASSED [ 34%] 417s bravais/test_2d_cell_pbc.py::test_bravais_2d_cell_pbc PASSED [ 34%] 417s bravais/test_classification_engine.py::test_generate_niggli_table[FCC-1] PASSED [ 34%] 417s 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build_/test_attach.py::test_attach_molecules PASSED [ 36%] 421s build_/test_attach.py::test_pbc PASSED [ 36%] 421s build_/test_attach.py::test_attach_to_surface PASSED [ 36%] 421s build_/test_attach.py::test_attach_randomly PASSED [ 36%] 421s build_/test_build_bulk.py::test_build_bulk PASSED [ 36%] 421s build_/test_bulk.py::test_bulk PASSED [ 36%] 421s build_/test_connected.py::test_split_biphenyl PASSED [ 36%] 421s build_/test_connected.py::test_connected_atoms PASSED [ 36%] 421s build_/test_connected.py::test_separate_dimer PASSED [ 36%] 421s build_/test_surface.py::test_surface PASSED [ 37%] 421s build_/test_surface_stack.py::test_surface_stack PASSED [ 37%] 421s build_/test_surface_terminations.py::test_surface_terminations PASSED [ 37%] 421s calculator/test_al.py::test_al[elk] SKIPPED (Not installed: elk) [ 37%] 421s calculator/test_al.py::test_al[openmx] SKIPPED (Not installed: openmx) [ 37%] 421s calculator/test_al.py::test_al[abinit] SKIPPED (Not installed: abinit) [ 37%] 421s calculator/test_al.py::test_al_old[aims] SKIPPED (use --calculators=...) [ 37%] 421s calculator/test_bond_polarizability.py::test_CC_bond PASSED [ 37%] 421s calculator/test_bond_polarizability.py::test_symmetry PASSED [ 37%] 421s calculator/test_bond_polarizability.py::test_2to3 PASSED [ 37%] 421s calculator/test_calculator.py::test_directory_and_label PASSED [ 37%] 421s calculator/test_calculator.py::test_deprecated_get_spin_polarized PASSED [ 37%] 421s calculator/test_ch4_energy.py::test_ch4[gamess_us] SKIPPED (use --ca...) [ 37%] 421s calculator/test_ch4_energy.py::test_ch4[gaussian] SKIPPED (use --cal...) [ 37%] 421s calculator/test_ch4_energy.py::test_ch4_reaction[siesta] SKIPPED (No...) [ 37%] 421s calculator/test_ch4_energy.py::test_ch4_reaction[openmx] SKIPPED (No...) [ 37%] 421s calculator/test_ch4_energy.py::test_ch4_reaction[octopus] SKIPPED (N...) [ 37%] 421s calculator/test_ch4_energy.py::test_ch4_reaction[nwchem] SKIPPED (No...) [ 37%] 421s calculator/test_ch4_energy.py::test_ch4_reaction[gpaw] SKIPPED (Not ...) [ 37%] 421s calculator/test_ch4_energy.py::test_ch4_reaction[espresso] SKIPPED (...) [ 38%] 421s calculator/test_ch4_energy.py::test_ch4_reaction[cp2k] SKIPPED (Not ...) [ 38%] 421s calculator/test_ch4_energy.py::test_ch4_reaction[aims] SKIPPED (Not ...) [ 38%] 421s calculator/test_ch4_energy.py::test_ch4_reaction[abinit] SKIPPED (No...) [ 38%] 421s calculator/test_dftd3.py::test_forces[dftd3] SKIPPED (Not installed:...) [ 38%] 421s calculator/test_dftd3.py::test_d2_old[dftd3] SKIPPED (Not installed:...) [ 38%] 421s calculator/test_dftd3.py::test_d3_bj[dftd3] SKIPPED (Not installed: ...) [ 38%] 421s calculator/test_dftd3.py::test_d3_zerom[dftd3] SKIPPED (Not installe...) [ 38%] 421s calculator/test_dftd3.py::test_d3_bjm[dftd3] SKIPPED (Not installed:...) [ 38%] 421s calculator/test_dftd3.py::test_alternative_tz[dftd3] SKIPPED (Not in...) [ 38%] 421s calculator/test_dftd3.py::test_d3_zero_abc[dftd3] SKIPPED (Not insta...) [ 38%] 421s calculator/test_dftd3.py::test_d3_zero_revpbe[dftd3] SKIPPED (Not in...) [ 38%] 421s calculator/test_dftd3.py::test_custom_damping[dftd3] SKIPPED (Not in...) [ 38%] 421s calculator/test_dftd3.py::test_d3_bj_abc[dftd3] SKIPPED (Not install...) [ 38%] 421s calculator/test_dftd3.py::test_d3_zerom_b3lyp[dftd3] SKIPPED (Not in...) [ 38%] 421s calculator/test_dftd3.py::test_diamond_stress[dftd3] SKIPPED (Not in...) [ 38%] 421s calculator/test_gulp.py::test_gulp SKIPPED (use --calculators=gulp t...) [ 38%] 421s calculator/test_gulp_opt.py::test_gulp_opt SKIPPED (use --calculator...) [ 38%] 421s calculator/test_h2.py::test_h2dft_old[aims] SKIPPED (use --calculato...) [ 38%] 421s calculator/test_h2.py::test_h2dft_old[gamess_us] SKIPPED (use --calc...) [ 38%] 421s calculator/test_h2.py::test_h2dft_old[gaussian] SKIPPED (use --calcu...) [ 39%] 421s calculator/test_h2.py::test_h2dft[cp2k] SKIPPED (Not installed: cp2k) [ 39%] 421s calculator/test_h2_bond_force.py::test_h2_bond[siesta] SKIPPED (Not ...) [ 39%] 421s calculator/test_h2_bond_force.py::test_h2_bond[nwchem] SKIPPED (Not ...) [ 39%] 421s calculator/test_h2_bond_force.py::test_h2_bond[gpaw] SKIPPED (Not in...) [ 39%] 421s calculator/test_h2_bond_force.py::test_h2_bond[espresso] SKIPPED (No...) [ 39%] 421s calculator/test_h2_bond_force.py::test_h2_bond[cp2k] SKIPPED (Not in...) [ 39%] 421s calculator/test_h2_bond_force.py::test_h2_bond[abinit] SKIPPED (Not ...) [ 39%] 421s calculator/test_h2morse.py::test_gs_minimum PASSED [ 39%] 421s calculator/test_h2morse.py::test_gs_io_overlap PASSED [ 39%] 421s calculator/test_h2morse.py::test_excited_state PASSED [ 39%] 421s calculator/test_h2morse.py::test_excited_io PASSED [ 39%] 421s calculator/test_h2morse.py::test_traditional PASSED [ 39%] 421s calculator/test_lj.py::test_minimum_energy PASSED [ 39%] 421s calculator/test_lj.py::test_minimum_forces PASSED [ 39%] 421s calculator/test_lj.py::test_system_changes PASSED [ 39%] 421s calculator/test_lj.py::test_finite_difference PASSED [ 39%] 422s calculator/test_lj.py::test_bulk_energies PASSED [ 39%] 422s calculator/test_lj.py::test_bulk_forces PASSED [ 39%] 422s calculator/test_lj.py::test_bulk_stress PASSED [ 39%] 422s calculator/test_mopac.py::test_mopac SKIPPED (use --calculators=mopa...) 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[ 40%] 422s calculator/test_traj.py::test_h2_traj[cp2k] SKIPPED (Not installed: ...) [ 40%] 422s calculator/test_traj.py::test_h2_traj[emt] PASSED [ 40%] 422s calculator/test_traj.py::test_h2_traj[gpaw] SKIPPED (Not installed: ...) [ 40%] 422s calculator/test_traj.py::test_h2_traj_old[Psi4] SKIPPED (use --calcu...) [ 40%] 422s calculator/test_traj.py::test_h2_traj_old[aims] SKIPPED (use --calcu...) [ 40%] 422s calculator/test_traj.py::test_h2_traj_old[crystal] SKIPPED (use --ca...) [ 41%] 422s calculator/test_traj.py::test_h2_traj_old[gamess_us] SKIPPED (use --...) [ 41%] 422s calculator/test_ts09.py::test_ts09 PASSED [ 41%] 422s calculator/abinit/test_abinit_cmdline.py::test_abinit_cmdline SKIPPED [ 41%] 422s calculator/abinit/test_main.py::test_si[abinit0] SKIPPED (Not instal...) [ 41%] 422s calculator/abinit/test_main.py::test_si[abinit1] SKIPPED (Not instal...) [ 41%] 422s calculator/abinit/test_main.py::test_au[abinit-fhi] SKIPPED (Not ins...) 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[ 45%] 423s calculator/nwchem/test_nwchem_parser.py::test_parser PASSED [ 45%] 423s calculator/nwchem/test_nwchem_runmany.py::test_nwchem[nwchem-dft--2051.9802410863354-True-False-kwargs0] SKIPPED [ 45%] 423s calculator/nwchem/test_nwchem_runmany.py::test_nwchem[nwchem-scf--2056.7877421222634-True-False-kwargs1] SKIPPED [ 45%] 423s calculator/nwchem/test_nwchem_runmany.py::test_nwchem[nwchem-mp2--2060.1413846247333-True-False-kwargs2] SKIPPED [ 45%] 423s calculator/nwchem/test_nwchem_runmany.py::test_nwchem[nwchem-ccsd--2060.3418911515882-False-False-kwargs3] SKIPPED [ 45%] 423s calculator/nwchem/test_nwchem_runmany.py::test_nwchem[nwchem-tce--2060.319141863451-False-False-kwargs4] SKIPPED [ 45%] 423s calculator/nwchem/test_nwchem_runmany.py::test_nwchem[nwchem-tddft--2044.3908422254976-True-False-kwargs5] SKIPPED [ 45%] 423s calculator/nwchem/test_nwchem_runmany.py::test_nwchem[nwchem-pspw--465.1290581383751-False-True-kwargs6] SKIPPED [ 46%] 423s calculator/nwchem/test_nwchem_runmany.py::test_nwchem[nwchem-band--465.1290611316276-False-True-kwargs7] SKIPPED [ 46%] 423s calculator/nwchem/test_nwchem_runmany.py::test_nwchem[nwchem-paw--2065.6600649367365-False-True-kwargs8] SKIPPED [ 46%] 423s calculator/nwchem/test_nwchem_spin_symmetry.py::test_main[nwchem] SKIPPED [ 46%] 423s calculator/nwchem/test_nwchem_stress.py::test_main[nwchem] SKIPPED (...) 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[ 66%] 485s fio/test_gaussian.py::test_read_gaussian_regex PASSED [ 66%] 485s fio/test_gaussian_out.py::test_match_magic PASSED [ 66%] 485s fio/test_gaussian_out.py::test_gaussian_out PASSED [ 66%] 485s fio/test_gen.py::test_gen[gen-None-False] PASSED [ 66%] 485s fio/test_gen.py::test_gen[gen-None-pbc1] PASSED [ 66%] 485s fio/test_gen.py::test_gen[gen-None-True] PASSED [ 66%] 485s fio/test_gen.py::test_gen[gen-cell1-False] PASSED [ 66%] 485s fio/test_gen.py::test_gen[gen-cell1-pbc1] PASSED [ 66%] 485s fio/test_gen.py::test_gen[gen-cell1-True] PASSED [ 66%] 485s fio/test_gen.py::test_gen[dftb-None-False] PASSED [ 66%] 485s fio/test_gen.py::test_gen[dftb-None-pbc1] PASSED [ 66%] 485s fio/test_gen.py::test_gen[dftb-None-True] PASSED [ 66%] 485s fio/test_gen.py::test_gen[dftb-cell1-False] PASSED [ 67%] 485s fio/test_gen.py::test_gen[dftb-cell1-pbc1] PASSED [ 67%] 485s fio/test_gen.py::test_gen[dftb-cell1-True] PASSED [ 67%] 485s fio/test_gen.py::test_gen_multiple PASSED [ 67%] 485s fio/test_gpaw.py::test_gpaw_output PASSED [ 67%] 485s fio/test_gpumd.py::test_read_gpumd_input PASSED [ 67%] 485s fio/test_gpumd.py::test_load_gpumd_input PASSED [ 67%] 485s fio/test_gpumd.py::test_gpumd_input_write PASSED [ 67%] 485s fio/test_info.py::test_atoms_info_in_traj PASSED [ 67%] 485s fio/test_ioformats.py::test_manually PASSED [ 67%] 485s fio/test_ioformats.py::test_ioformat[abinit-in] PASSED [ 67%] 485s fio/test_ioformats.py::test_ioformat[abinit-out] PASSED [ 67%] 485s fio/test_ioformats.py::test_ioformat[aims] PASSED [ 67%] 485s fio/test_ioformats.py::test_ioformat[aims-output] PASSED [ 67%] 485s fio/test_ioformats.py::test_ioformat[bundletrajectory] PASSED [ 67%] 485s fio/test_ioformats.py::test_ioformat[castep-castep] PASSED [ 67%] 485s fio/test_ioformats.py::test_ioformat[castep-cell] PASSED [ 67%] 485s fio/test_ioformats.py::test_ioformat[castep-geom] PASSED [ 67%] 485s fio/test_ioformats.py::test_ioformat[castep-md] PASSED [ 67%] 485s fio/test_ioformats.py::test_ioformat[castep-phonon] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[cfg] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[cif] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[cmdft] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[cml] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[cp2k-dcd] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[cp2k-restart] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[crystal] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[cube] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[dacapo-text] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[db] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[dftb] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[dlp4] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[dlp-history] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[dmol-arc] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[dmol-car] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[dmol-incoor] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[elk] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[elk-in] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[eon] PASSED [ 68%] 485s fio/test_ioformats.py::test_ioformat[eps] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[espresso-in] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[espresso-out] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[exciting] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[extxyz] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[findsym] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gamess-us-out] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gamess-us-in] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gamess-us-punch] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gaussian-in] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gaussian-out] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[acemolecule-out] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[acemolecule-input] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gen] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gif] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gpaw-out] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gpumd] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gpw] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gromacs] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[gromos] PASSED [ 69%] 485s fio/test_ioformats.py::test_ioformat[html] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[json] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[jsv] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[lammps-dump-text] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[lammps-dump-binary] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[lammps-data] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[magres] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[mol] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[mp4] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[mustem] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[mysql] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[netcdftrajectory] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[nomad-json] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[nwchem-in] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[nwchem-out] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[octopus-in] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[proteindatabank] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[png] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[postgresql] PASSED [ 70%] 485s fio/test_ioformats.py::test_ioformat[pov] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[prismatic] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[py] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[sys] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[qbox] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[res] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[rmc6f] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[sdf] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[siesta-xv] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[struct] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[struct_out] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[traj] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[turbomole] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[turbomole-gradient] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[v-sim] PASSED [ 71%] 485s fio/test_ioformats.py::test_ioformat[vasp] PASSED [ 71%] 485s 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fio/test_lammpsdump.py::test_recognize_lammpsdump[ITEM: TIMESTEP] PASSED [ 72%] 486s fio/test_lammpsdump.py::test_recognize_lammpsdump[anything\nITEM: TIMESTEP\nanything] PASSED [ 72%] 486s fio/test_lammpsdump.py::test_lammpsdump_order PASSED [ 72%] 486s fio/test_lammpsdump.py::test_lammpsdump_element PASSED [ 72%] 486s fio/test_lammpsdump.py::test_lammpsdump_errors PASSED [ 72%] 486s fio/test_lammpsdump.py::test_lammpsdump_position_reading[xs ys zs-True] PASSED [ 72%] 486s fio/test_lammpsdump.py::test_lammpsdump_position_reading[xsu ysu zsu-True] PASSED [ 72%] 486s fio/test_lammpsdump.py::test_lammpsdump_position_reading[x y z-False] PASSED [ 73%] 486s fio/test_lammpsdump.py::test_lammpsdump_position_reading[xu yu zu-False] PASSED [ 73%] 486s fio/test_lammpsdump.py::test_lammpsdump_bounds[pp pp pp-expected0] PASSED [ 73%] 486s fio/test_lammpsdump.py::test_lammpsdump_bounds[ss mm ff-expected1] PASSED [ 73%] 486s fio/test_lammpsdump.py::test_lammpsdump_bounds[fs sm mf-expected2] PASSED [ 73%] 486s fio/test_lammpsdump.py::test_lammpsdump_bounds[sf ms ff-expected3] PASSED [ 73%] 486s fio/test_lammpsdump.py::test_lammpsdump_bounds[pp ms ff-expected4] PASSED [ 73%] 486s fio/test_lammpsdump.py::test_lammpsdump_bounds[ff pp ff-expected5] PASSED [ 73%] 486s fio/test_lammpsdump.py::test_lammpsdump_bounds[ff mm pp-expected6] PASSED [ 73%] 486s fio/test_lammpsdump.py::test_lammpsdump_bounds[pp ff pp-expected7] PASSED [ 73%] 486s fio/test_magmom.py::test_magmom PASSED [ 73%] 486s fio/test_magres.py::test_magres PASSED [ 73%] 486s fio/test_match_magic.py::test_match_magic PASSED [ 73%] 486s fio/test_mustem.py::test_mustem_several_elements PASSED [ 73%] 486s fio/test_mustem.py::test_mustem_single_elements PASSED [ 73%] 486s fio/test_netcdftrajectory.py::test_netcdftrajectory PASSED [ 73%] 486s fio/test_netcdftrajectory.py::test_netcdf_with_variable_atomic_numbers PASSED [ 73%] 486s fio/test_netcdftrajectory.py::test_netcdf_with_nonconsecutive_index PASSED [ 73%] 486s fio/test_netcdftrajectory.py::test_types_to_numbers_argument PASSED [ 73%] 486s fio/test_nomad.py::test_nomad PASSED [ 73%] 486s fio/test_nwchem.py::test_nwchem PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[abinit-in] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[abinit-out] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[acemolecule-input] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[acemolecule-out] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[aims] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[aims-output] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[bundletrajectory] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[castep-castep] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[castep-cell] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[castep-geom] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[castep-md] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[castep-phonon] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[cfg] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[cif] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[cmdft] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[cml] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[cp2k-dcd] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[cp2k-restart] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[crystal] PASSED [ 74%] 486s fio/test_oi.py::test_ioformat[cube] PASSED [ 75%] 486s fio/test_oi.py::test_ioformat[dacapo-text] PASSED [ 75%] 486s fio/test_oi.py::test_ioformat[db] PASSED [ 75%] 486s fio/test_oi.py::test_ioformat[dlp-history] PASSED [ 75%] 486s fio/test_oi.py::test_ioformat[dlp4] PASSED [ 75%] 486s fio/test_oi.py::test_ioformat[elk] PASSED [ 75%] 486s fio/test_oi.py::test_ioformat[elk-in] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[eps] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[espresso-in] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[espresso-out] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[exciting] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[extxyz] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[findsym] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[gamess-us-in] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[gamess-us-out] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[gamess-us-punch] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[gaussian-in] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[gaussian-out] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[gen] PASSED [ 75%] 487s fio/test_oi.py::test_ioformat[gpaw-out] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[gpumd] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[gpw] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[gromacs] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[gromos] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[html] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[json] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[jsv] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[lammps-dump-binary] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[lammps-dump-text] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[magres] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[mol] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[netcdftrajectory] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[nomad-json] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[nwchem-in] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[nwchem-out] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[octopus-in] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[png] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[pov] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[proteindatabank] PASSED [ 76%] 487s fio/test_oi.py::test_ioformat[py] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[qbox] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[res] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[rmc6f] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[sdf] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[siesta-xv] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[struct] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[struct_out] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[sys] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[traj] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[turbomole] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[turbomole-gradient] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[vasp] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[vasp-out] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[vasp-xdatcar] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[vasp-xml] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[wout] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[x3d] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[xsd] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[xsf] PASSED [ 77%] 487s fio/test_oi.py::test_ioformat[xtd] PASSED [ 78%] 487s fio/test_oi.py::test_ioformat[xyz] PASSED [ 78%] 487s fio/test_oldtraj.py::test_oldtraj PASSED [ 78%] 487s fio/test_openmx.py::test_openmx_out PASSED [ 78%] 487s fio/test_openmx.py::test_openmx_read_eigenvalues PASSED [ 78%] 487s fio/test_opls.py::test_opls_write_lammps PASSED [ 78%] 487s fio/test_parallel.py::test_parallel PASSED [ 78%] 487s fio/test_pdb_cell_io.py::test_pdb_cell_io PASSED [ 78%] 487s fio/test_pdb_extra.py::test_pdb_read PASSED [ 78%] 487s fio/test_pdb_extra.py::test_pdb_read_with_arrays PASSED [ 78%] 487s fio/test_pickle_bundle_trajectory.py::test_raises PASSED [ 78%] 487s fio/test_pickle_bundle_trajectory.py::test_write_read_pickle PASSED [ 78%] 488s fio/test_pickle_bundle_trajectory.py::test_write_read_bundle XFAIL (...) [ 78%] 488s fio/test_pickle_bundle_trajectory.py::test_append_pickle PASSED [ 78%] 488s fio/test_pickle_bundle_trajectory.py::test_append_bundle XFAIL (same...) [ 78%] 488s fio/test_pickle_bundle_trajectory.py::test_old_trajectory_conversion_utility PASSED [ 78%] 488s fio/test_pickle_bundle_trajectory.py::test_bundletrajectory_info PASSED [ 78%] 488s fio/test_povray.py::test_povray_io SKIPPED (povray not installed) [ 78%] 488s fio/test_povray.py::test_povray_highorder SKIPPED (povray not installed) [ 78%] 488s fio/test_povray.py::test_deprecated PASSED [ 79%] 488s fio/test_prismatic.py::test_write_read_cycle_xyz_prismatic PASSED [ 79%] 488s fio/test_prismatic.py::test_write_error PASSED [ 79%] 488s fio/test_pycodcif_read.py::test_pycodcif PASSED [ 79%] 488s fio/test_qbox.py::test_read_output PASSED [ 79%] 488s fio/test_qbox.py::test_format PASSED [ 79%] 488s fio/test_readwrite_errors.py::test_readwrite_errors PASSED [ 79%] 488s fio/test_readwrite_errors.py::test_parse_filename_with_at_in_ext PASSED [ 79%] 488s fio/test_readwrite_errors.py::test_parse_filename_with_at_in_path PASSED [ 79%] 488s 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fio/test_rmc6f.py::test_rmc6f_read_line_of_atoms_section_style_magnetic PASSED [ 80%] 489s fio/test_rmc6f.py::test_rmc6f_read_process_rmc6f_lines_to_pos_and_cell PASSED [ 80%] 489s fio/test_rmc6f.py::test_rmc6f_read_process_rmc6f_lines_to_pos_and_cell_padded_whitespace PASSED [ 80%] 489s fio/test_rmc6f.py::test_rmc6f_write_output_column_format PASSED [ 80%] 489s fio/test_rmc6f.py::test_rmc6f_write_output PASSED [ 80%] 489s fio/test_siesta.py::test_read_struct_out PASSED [ 80%] 489s fio/test_siesta.py::test_read_fdf PASSED [ 80%] 489s fio/test_siesta.py::test_read_xv PASSED [ 80%] 489s fio/test_traj_bytesio.py::test_traj_bytesio PASSED [ 80%] 489s fio/test_trajectory.py::test_trajectory PASSED [ 80%] 489s fio/test_trajectory.py::test_append_nonexistent_file PASSED [ 80%] 489s fio/test_trajectory.py::test_only_energy PASSED [ 80%] 489s fio/test_trajectory.py::test_constraint_and_momenta PASSED [ 80%] 489s fio/test_trajectory_heterogeneous.py::test_trajectory_heterogeneous PASSED [ 80%] 489s fio/test_turbomole.py::test_turbomole PASSED [ 80%] 489s fio/test_ulm.py::test_open_anypathlike PASSED [ 80%] 489s fio/test_ulm.py::test_ulm PASSED [ 80%] 489s fio/test_ulm.py::test_append PASSED [ 80%] 489s fio/test_ulm.py::test_ulm_copy PASSED [ 81%] 489s fio/test_ulm_dummy.py::test_dummy_write PASSED [ 81%] 489s fio/test_v_sim.py::test_v_sim PASSED [ 81%] 489s fio/test_vasp_structure.py::TestXdatcarRoundtrip::test_roundtrip PASSED [ 81%] 489s fio/test_vasp_structure.py::TestXdatcarRoundtrip::test_roundtrip_single_atoms PASSED [ 81%] 489s fio/test_vasp_structure.py::TestXdatcarRoundtrip::test_typeerror PASSED [ 81%] 489s fio/test_vasp_structure.py::test_wrap PASSED [ 81%] 489s fio/test_wout.py::test_wout PASSED [ 81%] 489s fio/test_wout.py::test_wout_all PASSED [ 81%] 489s fio/test_xsd_bond.py::test_xsd_bond PASSED [ 81%] 489s fio/test_xsf_spec.py::test_xsf_spec PASSED [ 81%] 489s fio/test_xyz.py::test_single_write_and_read PASSED [ 81%] 489s fio/test_xyz.py::test_single_write_with_forces PASSED [ 81%] 489s fio/test_xyz.py::test_single_write_and_read_with_comment PASSED [ 81%] 489s fio/test_xyz.py::test_single_write_with_newline_comment[xyz] PASSED [ 81%] 489s fio/test_xyz.py::test_single_write_with_newline_comment[extxyz] PASSED [ 81%] 489s fio/test_xyz.py::test_multiple_write_and_read PASSED [ 81%] 489s forcefields/test_acn.py::test_acn PASSED [ 81%] 489s forcefields/test_aic.py::test_aic PASSED [ 81%] 489s forcefields/test_combine_mm.py::test_combine_mm PASSED [ 82%] 501s forcefields/test_combine_mm2.py::test_combine_mm2 PASSED [ 82%] 504s forcefields/test_counterions.py::test_counterions PASSED [ 82%] 504s forcefields/test_forceqmmm.py::test_qm_buffer_mask PASSED [ 82%] 504s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs0] PASSED [ 82%] 504s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs1] PASSED [ 82%] 504s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs2] PASSED [ 82%] 504s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs3] PASSED [ 82%] 504s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs4] PASSED [ 82%] 504s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs5] PASSED [ 82%] 504s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs6] PASSED [ 82%] 504s forcefields/test_forceqmmm.py::test_qm_pbc[kwargs7] PASSED [ 82%] 505s forcefields/test_forceqmmm.py::test_rescaled_calculator PASSED [ 82%] 510s forcefields/test_forceqmmm.py::test_forceqmmm PASSED [ 82%] 511s forcefields/test_forceqmmm.py::test_export_xyz PASSED [ 82%] 511s forcefields/test_forceqmmm.py::test_set_masks_from_region PASSED [ 82%] 511s forcefields/test_forceqmmm.py::test_import_xyz PASSED [ 82%] 512s forcefields/test_qmmm.py::test_qmmm PASSED [ 82%] 513s forcefields/test_qmmm_acn.py::test_qmmm_acn PASSED [ 82%] 517s forcefields/test_rattle.py::test_rattle PASSED [ 82%] 518s forcefields/test_rattle_linear.py::test_rattle_linear PASSED [ 83%] 518s forcefields/test_tip4p.py::test_tip4p PASSED [ 83%] 518s forcefields/test_tipnp.py::test_tipnp PASSED [ 83%] 518s ga/test_add_candidates.py::test_add_candidates PASSED [ 83%] 525s ga/test_basic_example_main_run.py::test_basic_example_main_run[0] PASSED [ 83%] 532s ga/test_bulk_operators.py::test_bulk_operators[0] PASSED [ 83%] 532s ga/test_chain_operators.py::test_chain_operators[0] PASSED [ 83%] 532s ga/test_create_database.py::test_create_database PASSED [ 83%] 532s ga/test_cutandsplicepairing.py::test_cutandsplicepairing[0] PASSED [ 83%] 532s ga/test_database_logic.py::test_database_logic[0] PASSED [ 83%] 533s ga/test_element_operators.py::test_element_operators[0] PASSED [ 83%] 534s ga/test_film_operators.py::test_film_operators[0] PASSED [ 83%] 534s ga/test_mutations.py::test_mutations[0] PASSED [ 83%] 534s ga/test_particle_comparators.py::test_particle_comparators[0] PASSED [ 83%] 534s ga/test_particle_operators.py::test_particle_operators[0] PASSED [ 83%] 534s ga/test_slab_operators.py::test_cut_splice[0] PASSED [ 83%] 534s ga/test_slab_operators.py::test_random_composition_mutation[0] PASSED [ 83%] 534s ga/test_slab_operators.py::test_random_element_mutation[0] PASSED [ 83%] 534s ga/test_slab_operators.py::test_neighborhood_element_mutation[0] PASSED [ 83%] 534s ga/test_slab_operators.py::test_random_permutation[0] PASSED [ 84%] 534s ga/test_standardcomparator.py::test_standardcomparator PASSED [ 84%] 535s ga/test_utilities.py::test_utilities PASSED [ 84%] 535s gui/test_run.py::test_nanotube SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_nanoparticle SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_color SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_settings SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_rotate SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_open_and_save SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_export_graphics[None] SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_export_graphics[output.png] SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_export_graphics[output.eps] SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_export_graphics[output.pov] SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_export_graphics[output.traj] SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_export_graphics[output.traj@0] SKIPPED (no dis...) [ 84%] 535s gui/test_run.py::test_fracocc SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_povray SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_select_atoms SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_modify_element SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_modify_tag SKIPPED (no display) [ 84%] 535s gui/test_run.py::test_modify_magmom SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_repeat SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_surface SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_movie SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_reciprocal SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_bad_reciprocal SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_add_atoms SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_cell_editor SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_constrain SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_quickinfo[atoms0] SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_quickinfo[atoms1] SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_quickinfo[atoms2] SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_quickinfo[atoms3] SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_clipboard_copy SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_clipboard_cut_paste SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_clipboard_paste_onto_empty SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_clipboard_paste_onto_existing SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_clipboard_paste_invalid[] SKIPPED (no display) [ 85%] 535s gui/test_run.py::test_clipboard_paste_invalid[invalid_atoms] SKIPPED [ 85%] 535s gui/test_run.py::test_clipboard_paste_invalid[[1, 2, 3]] SKIPPED (no...) [ 85%] 535s gui/test_run.py::test_callbacks SKIPPED (no display) [ 86%] 535s lammpsdata/test_lammpsdata_read.py::test_lammpsdata_read PASSED [ 86%] 538s md/test_CO2linear_Au111_langevin.py::test_CO2linear_Au111_langevin PASSED [ 86%] 539s md/test_ce_curvature.py::test_curvature1 PASSED [ 86%] 540s md/test_ce_curvature.py::test_curvature2 PASSED [ 86%] 540s md/test_ce_logging.py::test_logging PASSED [ 86%] 542s md/test_ce_potentiostat.py::test_potentiostat PASSED [ 86%] 542s md/test_ce_potentiostat.py::test_potentiostat_no_fs PASSED [ 86%] 542s md/test_fixrotation.py::test_fixrotation_asap SKIPPED (could not imp...) [ 86%] 542s md/test_idealgas.py::test_idealgas PASSED [ 86%] 546s md/test_langevin_switching.py::test_langevin_switching PASSED [ 86%] 546s md/test_maxwellboltzmann.py::test_maxwellboltzmann PASSED [ 86%] 546s md/test_md.py::test_md PASSED [ 86%] 547s md/test_md_logger.py::test_optimizer[FIRE] PASSED [ 86%] 548s md/test_md_logger.py::test_optimizer[BFGS] PASSED [ 86%] 548s md/test_md_logger.py::test_md[cls_and_kwargs0] PASSED [ 86%] 548s md/test_md_logger.py::test_md[cls_and_kwargs1] PASSED [ 86%] 549s md/test_md_logger_interval.py::test_optimization_log_and_trajectory_length[FIRE] PASSED [ 86%] 550s md/test_md_logger_interval.py::test_optimization_log_and_trajectory_length[BFGS] PASSED [ 86%] 550s md/test_md_logger_interval.py::test_md_log_and_trajectory_length[VelocityVerlet-kwargs0-1] PASSED [ 87%] 550s md/test_md_logger_interval.py::test_md_log_and_trajectory_length[VelocityVerlet-kwargs0-2] PASSED [ 87%] 550s md/test_md_logger_interval.py::test_md_log_and_trajectory_length[Langevin-kwargs1-1] PASSED [ 87%] 550s md/test_md_logger_interval.py::test_md_log_and_trajectory_length[Langevin-kwargs1-2] PASSED [ 87%] 550s md/test_nvt_npt.py::test_nvtberendsen SKIPPED (could not import 'asa...) [ 87%] 550s md/test_nvt_npt.py::test_nptberendsen SKIPPED (could not import 'asa...) [ 87%] 550s md/test_nvt_npt.py::test_npt SKIPPED (could not import 'asap3': No m...) [ 87%] 550s md/test_phonon_md_init.py::test_phonon_md_init SKIPPED (could not im...) [ 87%] 550s md/test_velocity_distribution.py::test_stationary PASSED [ 87%] 550s md/test_velocity_distribution.py::test_stationary_propagate PASSED [ 87%] 550s md/test_velocity_distribution.py::test_zero_rotation PASSED [ 87%] 550s md/test_verlet_thermostats_asap.py::test_verlet_thermostats_asap SKIPPED [ 87%] 551s neb/test_COCu111.py::test_COCu111 PASSED [ 87%] 555s neb/test_COCu111_2.py::test_COCu111_2 PASSED [ 87%] 555s neb/test_autoneb.py::test_autoneb SKIPPED (could not import 'asap3':...) [ 87%] 581s neb/test_dynamic_neb.py::test_dynamic_neb PASSED [ 87%] 582s neb/test_idpp.py::test_idpp PASSED [ 87%] 582s neb/test_interpolate_images.py::test_interpolate_images_default PASSED [ 87%] 582s neb/test_interpolate_images.py::test_interpolate_images_fixed PASSED [ 87%] 582s neb/test_interpolate_images.py::test_interpolate_images_scaled_coord PASSED [ 87%] 582s neb/test_interpolate_images.py::test_interpolate_images_cell PASSED [ 88%] 582s neb/test_interpolate_images.py::test_interpolate_images_cell_default_interpolate_cell_scaled_coord PASSED [ 88%] 586s neb/test_neb_tr.py::test_neb_tr PASSED [ 88%] 591s neb/test_precon_neb.py::test_neb_methods[aseneb-BFGS-None-None] PASSED [ 88%] 593s neb/test_precon_neb.py::test_neb_methods[improvedtangent-BFGS-None-None] PASSED [ 88%] 597s neb/test_precon_neb.py::test_neb_methods[spline-NEBOptimizer-None-ODE] PASSED [ 88%] 600s neb/test_precon_neb.py::test_neb_methods[string-NEBOptimizer-Exp-ODE] PASSED [ 88%] 601s neb/test_precon_neb.py::test_neb_optimizers[ODE] PASSED [ 88%] 601s neb/test_precon_neb.py::test_neb_optimizers[static] PASSED [ 88%] 602s neb/test_precon_neb.py::test_precon_initialisation PASSED [ 88%] 602s neb/test_precon_neb.py::test_single_precon_initialisation PASSED [ 88%] 603s neb/test_precon_neb.py::test_precon_assembly PASSED [ 88%] 603s neb/test_precon_neb.py::test_spline_fit PASSED [ 88%] 603s neb/test_precon_neb.py::test_integrate_forces PASSED [ 88%] 603s neb/test_shared_calculator_neb.py::test_get_neb_method PASSED [ 88%] 603s neb/test_shared_calculator_neb.py::TestNEB::test_deprecations PASSED [ 88%] 603s neb/test_shared_calculator_neb.py::TestNEB::test_neb_default PASSED [ 88%] 603s neb/test_shared_calculator_neb.py::TestNEB::test_raising_parallel_errors PASSED [ 88%] 603s neb/test_shared_calculator_neb.py::TestNEB::test_no_shared_calc PASSED [ 88%] 603s neb/test_shared_calculator_neb.py::TestNEB::test_init_checks PASSED [ 88%] 603s neb/test_shared_calculator_neb.py::TestNEB::test_freeze_method PASSED [ 89%] 604s neighbor/test_neighbor.py::test_supercell PASSED [ 89%] 604s neighbor/test_neighbor.py::test_H2 PASSED [ 89%] 604s neighbor/test_neighbor.py::test_H2_shape_and_type PASSED [ 89%] 604s neighbor/test_neighbor.py::test_fcc PASSED [ 89%] 604s neighbor/test_neighbor.py::test_empty_neighbor_list PASSED [ 89%] 604s neighbor/test_neighbor.py::test_hexagonal_cell_and_large_cutoff PASSED [ 89%] 604s neighbor/test_neighbor.py::test_small_cell_and_large_cutoff PASSED [ 89%] 604s neighbor/test_neighbor_initialization.py::test_neighborlist_initialization PASSED [ 89%] 608s neighbor/test_neighbor_kernel.py::test_neighbor_kernel PASSED [ 89%] 608s optimize/test_bad_restart.py::test_bad_restart PASSED [ 89%] 611s optimize/test_fire.py::test_fire PASSED [ 89%] 611s optimize/test_minimahop.py::test_minimahop SKIPPED (could not import...) [ 89%] 611s optimize/test_optimizers.py::test_optimize[MDMin] PASSED [ 89%] 612s optimize/test_optimizers.py::test_optimize[FIRE] PASSED [ 89%] 612s optimize/test_optimizers.py::test_optimize[LBFGS] PASSED [ 89%] 613s optimize/test_optimizers.py::test_optimize[LBFGSLineSearch] PASSED [ 89%] 613s optimize/test_optimizers.py::test_optimize[BFGSLineSearch] PASSED [ 89%] 613s optimize/test_optimizers.py::test_optimize[BFGS] PASSED [ 89%] 614s optimize/test_optimizers.py::test_optimize[GoodOldQuasiNewton] PASSED [ 90%] 614s optimize/test_optimizers.py::test_optimize[GPMin] PASSED [ 90%] 614s optimize/test_optimizers.py::test_optimize[SciPyFminCG] PASSED [ 90%] 614s optimize/test_optimizers.py::test_optimize[SciPyFminBFGS] PASSED [ 90%] 615s optimize/test_optimizers.py::test_optimize[PreconLBFGS] PASSED [ 90%] 617s optimize/test_optimizers.py::test_optimize[PreconFIRE] PASSED [ 90%] 617s optimize/test_optimizers.py::test_optimize[Berny] SKIPPED (could not...) [ 90%] 617s optimize/test_optimizers.py::test_optimize[ODE12r] PASSED [ 90%] 617s optimize/test_optimizers.py::test_optimize[PreconODE12r] PASSED [ 90%] 618s optimize/test_replay.py::test_replay PASSED [ 90%] 621s precon/test_amin.py::test_precon_amin PASSED [ 90%] 638s precon/test_ff_and_precon_c60.py::test_opt_with_precon PASSED [ 90%] 641s precon/test_lbfgs.py::test_preconlbfgs PASSED [ 90%] 641s precon/test_precon_assembly.py::test_assembly_ref_atoms[None] PASSED [ 90%] 641s precon/test_precon_assembly.py::test_assembly_ref_atoms[C1] PASSED [ 90%] 642s precon/test_precon_assembly.py::test_assembly_ref_atoms[Exp] PASSED [ 90%] 642s precon/test_precon_assembly.py::test_assembly_ref_atoms[Pfrommer] PASSED [ 90%] 642s precon/test_precon_assembly.py::test_assembly_ref_atoms[FF] PASSED [ 90%] 642s precon/test_precon_assembly.py::test_assembly_ref_atoms[Exp_FF] PASSED [ 90%] 642s precon/test_precon_assembly.py::test_assembly_atoms[None] PASSED [ 90%] 642s precon/test_precon_assembly.py::test_assembly_atoms[C1] PASSED [ 91%] 642s precon/test_precon_assembly.py::test_assembly_atoms[Exp] PASSED [ 91%] 642s precon/test_precon_assembly.py::test_assembly_atoms[Pfrommer] PASSED [ 91%] 642s precon/test_precon_assembly.py::test_assembly_atoms[FF] PASSED [ 91%] 642s precon/test_precon_assembly.py::test_assembly_atoms[Exp_FF] PASSED [ 91%] 642s precon/test_precon_assembly.py::test_assembly_var_cell[None] PASSED [ 91%] 642s precon/test_precon_assembly.py::test_assembly_var_cell[C1] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_assembly_var_cell[Exp] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_assembly_var_cell[Pfrommer] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_assembly_var_cell[FF] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_assembly_var_cell[Exp_FF] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_assembly_fixed_atoms[None] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_assembly_fixed_atoms[C1] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_assembly_fixed_atoms[Exp] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_assembly_fixed_atoms[Pfrommer] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_assembly_fixed_atoms[FF] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_assembly_fixed_atoms[Exp_FF] PASSED [ 91%] 643s precon/test_precon_assembly.py::test_apply_atoms[None] PASSED [ 91%] 644s precon/test_precon_assembly.py::test_apply_atoms[C1] PASSED [ 91%] 644s precon/test_precon_assembly.py::test_apply_atoms[Exp] PASSED [ 92%] 644s precon/test_precon_assembly.py::test_apply_atoms[Pfrommer] PASSED [ 92%] 644s precon/test_precon_assembly.py::test_apply_atoms[FF] PASSED [ 92%] 644s precon/test_precon_assembly.py::test_apply_atoms[Exp_FF] PASSED [ 92%] 644s precon/test_precon_assembly.py::test_apply_fixed_atoms[None] PASSED [ 92%] 644s precon/test_precon_assembly.py::test_apply_fixed_atoms[C1] PASSED [ 92%] 644s precon/test_precon_assembly.py::test_apply_fixed_atoms[Exp] PASSED [ 92%] 644s precon/test_precon_assembly.py::test_apply_fixed_atoms[Pfrommer] PASSED [ 92%] 645s precon/test_precon_assembly.py::test_apply_fixed_atoms[FF] PASSED [ 92%] 645s precon/test_precon_assembly.py::test_apply_fixed_atoms[Exp_FF] PASSED [ 92%] 645s precon/test_smallcell.py::test_precon_warn PASSED [ 92%] 645s precon/test_smallcell.py::test_precon_nowarn PASSED [ 92%] 648s precon/test_unitcellfilter.py::test_precon PASSED [ 92%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sequence[0] PASSED [ 92%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sequence[1] PASSED [ 92%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sequence[3] PASSED [ 92%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_plot[1] PASSED [ 92%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_plot[5] PASSED [ 92%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_plot[None] PASSED [ 92%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_slicing PASSED [ 92%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_collection_equality PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[True] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[1] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[0.5] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[string] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_equality_wrongtype[rawdos] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_addition PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sample[options0] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sample[options1] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sample_grid[options0] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sample_grid[options1] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sample_empty PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_from_data[x0-weights0-bad_info0] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_from_data[x1-weights1-bad_info1] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sum_all[collection_data0-collection_info0-expected0] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sum_all[collection_data1-collection_info1-expected1] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sum_all[collection_data2-collection_info2-expected2] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_sum_empty PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_total[collection_data0-collection_info0] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_total[collection_data1-collection_info1] PASSED [ 93%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_total[collection_data2-collection_info2] PASSED [ 94%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info0-select_query0-select_result0-select_not_result0-sum_by_result0] PASSED [ 94%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info1-select_query1-select_result1-None-sum_by_result1] PASSED [ 94%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info2-select_query2-None-select_not_result2-sum_by_result2] PASSED [ 94%] 648s spectrum/test_doscollection.py::TestDOSCollection::test_select[select_info3-select_query3-select_result3-select_not_result3-sum_by_result3] PASSED [ 94%] 648s spectrum/test_doscollection.py::TestRawDOSCollection::test_init PASSED [ 94%] 648s spectrum/test_doscollection.py::TestGridDOSCollection::test_init_errors PASSED [ 94%] 648s spectrum/test_doscollection.py::TestGridDOSCollection::test_select PASSED [ 94%] 648s spectrum/test_doscollection.py::TestGridDOSCollection::test_sequence PASSED [ 94%] 648s spectrum/test_doscollection.py::TestGridDOSCollection::test_slicing PASSED [ 94%] 648s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x0-weights0-info0-None] PASSED [ 94%] 648s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x1-weights1-info1-None] PASSED [ 94%] 648s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x2-weights2-None-IndexError] PASSED [ 94%] 648s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x3-weights3-None-IndexError] PASSED [ 94%] 648s spectrum/test_doscollection.py::TestGridDOSCollection::test_from_data[x4-weights4-None-IndexError] PASSED [ 94%] 648s spectrum/test_doscollection.py::TestGridDOSCollection::test_plot_no_resample PASSED [ 94%] 648s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[None-expected0] PASSED [ 94%] 648s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[info1-expected1] PASSED [ 94%] 648s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[info2-expected2] PASSED [ 94%] 648s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[notadict-TypeError] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestDosData::test_dosdata_init_info[False-TypeError] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info0-] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info1-key1: value1] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info2-key1: value1; key2: value2] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info3-xyz] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestDosData::test_label_from_info[info4-xyz] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_init PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_access PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_copy PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[True] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[1] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[0.5] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_equality_wrongtype[string] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_10-data_20-True] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_11-data_21-False] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_12-data_22-False] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_13-data_23-False] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_14-data_24-False] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_equality[data_15-data_25-False] PASSED [ 95%] 648s spectrum/test_dosdata.py::TestRawDosData::test_addition PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data0-args0-result0] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data1-args1-result1] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data2-args2-result2] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data3-args3-result3] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_sampling[data4-args4-result4] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_sampling_error PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_sample_grid PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_plot[1] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_plot[5] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_plot[None] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_plot_deltas[1] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_plot_deltas[5] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestRawDosData::test_plot_deltas[None] PASSED [ 96%] 648s spectrum/test_dosdata.py::TestGridDosData::test_init PASSED [ 96%] 648s spectrum/test_dosdata.py::TestGridDosData::test_access PASSED [ 96%] 648s spectrum/test_dosdata.py::TestGridDosData::test_copy PASSED [ 96%] 648s spectrum/test_dosdata.py::TestGridDosData::test_addition PASSED [ 96%] 648s spectrum/test_dosdata.py::TestGridDosData::test_check_spacing PASSED [ 96%] 648s spectrum/test_dosdata.py::TestGridDosData::test_resampling_consistency PASSED [ 96%] 648s spectrum/test_dosdata.py::TestGridDosData::test_plot[1] PASSED [ 97%] 648s spectrum/test_dosdata.py::TestGridDosData::test_plot[5] PASSED [ 97%] 648s spectrum/test_dosdata.py::TestGridDosData::test_plot[None] PASSED [ 97%] 648s spectrum/test_dosdata.py::TestGridDosData::test_plot_broad_dos PASSED [ 97%] 648s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs0-expected0] PASSED [ 97%] 648s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs1-expected1] PASSED [ 97%] 648s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs2-expected2] PASSED [ 97%] 648s spectrum/test_dosdata.py::TestGridDosData::test_smearing_args_interpreter[inputs3-expected3] PASSED [ 97%] 648s spectrum/test_dosdata.py::TestMultiDosData::test_addition PASSED [ 97%] 648s standardization/test_properties.py::test_calc_properties PASSED [ 97%] 651s transport/test_transport_calculator.py::test_transport_calculator PASSED [ 97%] 651s vibrations/test_albrecht.py::test_one_state PASSED [ 97%] 651s vibrations/test_albrecht.py::test_all_states PASSED [ 97%] 651s vibrations/test_albrecht.py::test_multiples PASSED [ 97%] 651s vibrations/test_albrecht.py::test_summary PASSED [ 97%] 652s vibrations/test_bond_polarizability_raman.py::test_bulk PASSED [ 97%] 653s vibrations/test_bond_polarizability_raman.py::test_bulk_kpts PASSED [ 97%] 653s vibrations/test_bond_polarizability_raman.py::test_c3 PASSED [ 97%] 653s vibrations/test_combine.py::test_combine PASSED [ 97%] 653s vibrations/test_folding.py::test_folding PASSED [ 98%] 653s vibrations/test_franck_condon.py::test_franck_condon PASSED [ 98%] 654s vibrations/test_franck_condon.py::test_ch4_all PASSED [ 98%] 654s vibrations/test_franck_condon.py::test_ch4_minfreq PASSED [ 98%] 654s vibrations/test_pickle2json.py::test_pickle2json PASSED [ 98%] 654s vibrations/test_placzek.py::test_summary PASSED [ 98%] 654s vibrations/test_placzek.py::test_names PASSED [ 98%] 654s vibrations/test_placzek.py::test_overlap PASSED [ 98%] 654s vibrations/test_placzek.py::test_compare_placzek_implementation_intensities PASSED [ 98%] 654s vibrations/test_profeta_albrecht.py::test_compare_placzek_albrecht_intensities PASSED [ 98%] 654s vibrations/test_vib.py::TestHarmonicVibrations::test_harmonic_vibrations PASSED [ 98%] 654s vibrations/test_vib.py::TestHarmonicVibrations::test_consistency_with_vibrationsdata PASSED [ 98%] 654s vibrations/test_vib.py::TestHarmonicVibrations::test_json_manipulation PASSED [ 98%] 654s vibrations/test_vib.py::TestHarmonicVibrations::test_vibrations_methods PASSED [ 98%] 654s vibrations/test_vib.py::TestHarmonicVibrations::test_vibrations_restart_dir PASSED [ 98%] 654s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask0-expected_indices0] PASSED [ 98%] 654s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask1-expected_indices1] PASSED [ 98%] 654s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask2-expected_indices2] PASSED [ 98%] 654s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask3-expected_indices3] PASSED [ 98%] 654s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask4-expected_indices4] PASSED [ 98%] 654s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_indices_from_mask[mask5-expected_indices5] PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_tabulate_energies PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsDataStaticMethods::test_get_jmol_images[kwargs0-expected0] PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_init PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_energies_and_modes PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_imaginary_energies PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_zero_mass PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_new_mass PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_fixed_atoms PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_dos PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_pdos PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_todict PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_dict_roundtrip PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_dict_indices[indices0-expected_mask0] PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_dict_indices[None-expected_mask1] PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_jmol_roundtrip PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_bad_hessian PASSED [ 99%] 654s vibrations/test_vib.py::TestVibrationsData::test_bad_hessian2d PASSED [ 99%] 654s vibrations/test_vib.py::TestSlab::test_vibration_on_surface PASSED [ 99%] 655s vibrations/test_vibrations_example.py::test_vibrations_example PASSED [100%] 655s 655s =============================== warnings summary =============================== 655s :488 655s :488: RuntimeWarning: numpy.ndarray size changed, may indicate binary incompatibility. Expected 16 from C header, got 96 from PyObject 655s 655s test_doctests.py::test_doctest[ase.phasediagram] 655s test_pourbaix.py::test_pourbaix 655s /usr/lib/python3/dist-packages/ase/phasediagram.py:253: OptimizeWarning: Unrecognized options detected: {'lstsq': True}. These will be passed to HiGHS verbatim. 655s result = linprog(c=energies, 655s 655s test_forcecurve.py::test_forcecurve 655s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). 655s EPOCH = datetime.datetime.utcfromtimestamp(0) 655s 655s test_parsemath.py: 109 warnings 655s constraints/test_parameteric_constr.py: 66 warnings 655s fio/test_aims_io.py: 66 warnings 655s /usr/lib/python3/dist-packages/ase/utils/parsemath.py:146: DeprecationWarning: ast.Num is deprecated and will be removed in Python 3.14; use ast.Constant instead 655s if isinstance(node, ast.Num): # 655s 655s test_parsemath.py: 50 warnings 655s constraints/test_parameteric_constr.py: 64 warnings 655s fio/test_aims_io.py: 45 warnings 655s /usr/lib/python3/dist-packages/ase/utils/parsemath.py:147: DeprecationWarning: Attribute n is deprecated and will be removed in Python 3.14; use value instead 655s return node.n 655s 655s calculator/abinit/test_main.py::test_au[abinit-fhi] 655s /usr/lib/python3.12/pathlib.py:357: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 655s def __init__(self, *args): 655s Enable tracemalloc to get traceback where the object was allocated. 655s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 655s 655s forcefields/test_tipnp.py::test_tipnp 655s /usr/lib/python3/dist-packages/numpy/core/arrayprint.py:989: ResourceWarning: unclosed file <_io.FileIO name='/dev/null' mode='wb' closefd=True> 655s int_part, frac_part = zip(*(s.split('.') for s in strs)) 655s Enable tracemalloc to get traceback where the object was allocated. 655s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 655s 655s ga/test_database_logic.py::test_database_logic[0] 655s /usr/lib/python3.12/contextlib.py:132: ResourceWarning: unclosed file <_io.TextIOWrapper name='/dev/null' mode='w' encoding='UTF-8'> 655s def __enter__(self): 655s Enable tracemalloc to get traceback where the object was allocated. 655s See https://docs.pytest.org/en/stable/how-to/capture-warnings.html#resource-warnings for more info. 655s 655s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 655s = 1659 passed, 300 skipped, 2 xfailed, 2 xpassed, 407 warnings in 278.81s (0:04:38) = 655s autopkgtest [17:09:18]: test command1: -----------------------] 656s autopkgtest [17:09:19]: test command1: - - - - - - - - - - results - - - - - - - - - - 656s command1 PASS 657s autopkgtest [17:09:20]: @@@@@@@@@@@@@@@@@@@@ summary 657s command1 PASS 675s Creating nova instance adt-noble-ppc64el-python-ase-20240323-165823-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...