0s autopkgtest [22:32:47]: starting date and time: 2024-03-26 22:32:47+0000 0s autopkgtest [22:32:47]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [22:32:47]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5lmtbeii/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed --apt-upgrade pdb2pqr --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3-defaults/3.12.2-0ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-ppc64el-19.secgroup --name adt-noble-ppc64el-pdb2pqr-20240326-223247-juju-7f2275-prod-proposed-migration-environment-3-65060660-a5e1-4c8e-9314-20adeeceabee --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 208s autopkgtest [22:36:15]: testbed dpkg architecture: ppc64el 208s autopkgtest [22:36:15]: testbed apt version: 2.7.12 208s autopkgtest [22:36:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 209s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 209s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4000 kB] 210s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [55.4 kB] 210s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [8504 B] 210s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB] 210s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [701 kB] 210s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 210s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 210s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 210s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4217 kB] 210s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 210s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [62.2 kB] 210s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 213s Fetched 9672 kB in 2s (4185 kB/s) 213s Reading package lists... 215s Reading package lists... 215s Building dependency tree... 215s Reading state information... 215s Calculating upgrade... 216s The following packages will be upgraded: 216s psmisc 216s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 216s Need to get 192 kB of archives. 216s After this operation, 28.7 kB disk space will be freed. 216s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el psmisc ppc64el 23.7-1 [192 kB] 216s Fetched 192 kB in 0s (530 kB/s) 216s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 216s Preparing to unpack .../psmisc_23.7-1_ppc64el.deb ... 216s Unpacking psmisc (23.7-1) over (23.6-2) ... 216s Setting up psmisc (23.7-1) ... 216s Processing triggers for man-db (2.12.0-3) ... 217s Reading package lists... 217s Building dependency tree... 217s Reading state information... 217s 0 upgraded, 0 newly installed, 0 to remove and 248 not upgraded. 218s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 218s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 218s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 218s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 219s Reading package lists... 219s Reading package lists... 219s Building dependency tree... 219s Reading state information... 220s Calculating upgrade... 220s The following packages were automatically installed and are no longer required: 220s libaio1 libnetplan0 python3-distutils python3-lib2to3 220s Use 'sudo apt autoremove' to remove them. 220s The following packages will be REMOVED: 220s libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1 220s libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11 220s libhogweed6 libmagic1 libnettle8 libnpth0 libnvme1 libparted2 libperl5.38 220s libpng16-16 libpsl5 libreadline8 libreiserfscore0 libssl3 libtirpc3 liburcu8 220s libuv1 220s The following NEW packages will be installed: 220s bpfcc-tools bpftrace fontconfig-config fonts-dejavu-core fonts-dejavu-mono 220s ieee-data libaio1t64 libapt-pkg6.0t64 libarchive13t64 libatm1t64 libbpfcc 220s libc-dev-bin libc-devtools libc6-dev libclang-cpp18 libclang1-18 220s libcrypt-dev libcurl3t64-gnutls libcurl4t64 libdb5.3t64 libdeflate0 220s libdw1t64 libelf1t64 libext2fs2t64 libfontconfig1 libgd3 libgdbm-compat4t64 220s libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 220s libjbig0 libjpeg-turbo8 libjpeg8 liblerc4 libllvm18 libmagic1t64 libnetplan1 220s libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64 libperl5.38t64 220s libpng16-16t64 libpsl5t64 libreadline8t64 libreiserfscore0t64 libsharpyuv0 220s libssl3t64 libtiff6 libtirpc3t64 libunwind8 liburcu8t64 libuv1t64 libwebp7 220s libxpm4 linux-headers-6.8.0-20 linux-headers-6.8.0-20-generic 220s linux-image-6.8.0-20-generic linux-libc-dev linux-modules-6.8.0-20-generic 220s linux-modules-extra-6.8.0-20-generic linux-tools-6.8.0-20 220s linux-tools-6.8.0-20-generic linux-tools-common manpages manpages-dev 220s python3-bpfcc python3-netaddr rpcsvc-proto ubuntu-kernel-accessories 220s xdg-user-dirs 220s The following packages will be upgraded: 220s apparmor apt apt-utils base-files bash bc bind9-dnsutils bind9-host 220s bind9-libs binutils binutils-common binutils-powerpc64le-linux-gnu bolt 220s bsdextrautils bsdutils btrfs-progs coreutils cryptsetup-bin curl dbus 220s dbus-bin dbus-daemon dbus-session-bus-common dbus-system-bus-common 220s dbus-user-session dhcpcd-base dirmngr dmsetup dpkg dpkg-dev e2fsprogs 220s e2fsprogs-l10n eject fdisk file ftp fwupd gawk gcc-13-base gcc-14-base 220s gir1.2-girepository-2.0 gir1.2-glib-2.0 gnupg gnupg-l10n gnupg-utils gpg 220s gpg-agent gpg-wks-client gpgconf gpgsm gpgv groff-base grub-common 220s grub-ieee1275 grub-ieee1275-bin grub2-common ibverbs-providers 220s inetutils-telnet info initramfs-tools initramfs-tools-bin 220s initramfs-tools-core install-info iproute2 jq keyboxd kmod kpartx 220s krb5-locales libapparmor1 libaudit-common libaudit1 libbinutils libblkid1 220s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 220s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 220s libblockdev3 libbpf1 libbrotli1 libcap-ng0 libcom-err2 libcryptsetup12 220s libctf-nobfd0 libctf0 libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 220s libdpkg-perl libevent-core-2.1-7 libexpat1 libfdisk1 libfido2-1 libfreetype6 220s libftdi1-2 libfwupd2 libgcc-s1 libgirepository-1.0-1 libglib2.0-data 220s libgssapi-krb5-2 libgudev-1.0-0 libgusb2 libibverbs1 libjcat1 libjq1 220s libjson-glib-1.0-0 libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3 220s libkrb5support0 libldap-common libldap2 liblocale-gettext-perl liblzma5 220s libmagic-mgc libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14 220s libnsl2 libnss-systemd libpam-modules libpam-modules-bin libpam-runtime 220s libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0 220s libpolkit-gobject-1-0 libproc2-0 libprotobuf-c1 libpython3-stdlib 220s libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal 220s libpython3.12-stdlib libqmi-glib5 libqmi-proxy libqrtr-glib0 librtmp1 220s libsasl2-2 libsasl2-modules libsasl2-modules-db libseccomp2 libselinux1 220s libsemanage-common libsemanage2 libsframe1 libslang2 libsmartcols1 220s libsqlite3-0 libss2 libssh-4 libstdc++6 libsystemd-shared libsystemd0 220s libtext-charwidth-perl libtext-iconv-perl libtirpc-common libudev1 220s libudisks2-0 libusb-1.0-0 libuuid1 libvolume-key1 libxml2 libxmlb2 libxmuu1 220s linux-generic linux-headers-generic linux-headers-virtual 220s linux-image-generic linux-image-virtual linux-virtual logsave lshw lsof 220s man-db motd-news-config mount mtr-tiny multipath-tools netplan-generator 220s netplan.io openssh-client openssh-server openssh-sftp-server openssl parted 220s perl perl-base perl-modules-5.38 pinentry-curses plymouth 220s plymouth-theme-ubuntu-text procps python-apt-common python3 python3-apt 220s python3-cryptography python3-dbus python3-distutils python3-gdbm python3-gi 220s python3-lib2to3 python3-minimal python3-netplan python3-pkg-resources 220s python3-pyrsistent python3-setuptools python3-typing-extensions python3-yaml 220s python3.11 python3.11-minimal python3.12 python3.12-minimal readline-common 220s rsync rsyslog shared-mime-info sudo systemd systemd-dev systemd-resolved 220s systemd-sysv systemd-timesyncd tcpdump telnet tnftp ubuntu-pro-client 220s ubuntu-pro-client-l10n udev udisks2 usb.ids util-linux uuid-runtime 220s vim-common vim-tiny wget xxd xz-utils zlib1g 220s 248 upgraded, 73 newly installed, 28 to remove and 0 not upgraded. 220s Need to get 390 MB of archives. 220s After this operation, 640 MB of additional disk space will be used. 220s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el motd-news-config all 13ubuntu8 [5098 B] 220s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el base-files ppc64el 13ubuntu8 [74.5 kB] 220s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bash ppc64el 5.2.21-2ubuntu3 [977 kB] 221s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bsdutils ppc64el 1:2.39.3-9ubuntu2 [98.3 kB] 221s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el coreutils ppc64el 9.4-3ubuntu3 [1523 kB] 221s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudisks2-0 ppc64el 2.10.1-6 [182 kB] 221s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el udisks2 ppc64el 2.10.1-6 [344 kB] 221s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el shared-mime-info ppc64el 2.4-1build1 [481 kB] 221s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gir1.2-girepository-2.0 ppc64el 1.79.1-1ubuntu6 [24.8 kB] 221s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gir1.2-glib-2.0 ppc64el 2.79.3-3ubuntu5 [182 kB] 221s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgirepository-1.0-1 ppc64el 1.79.1-1ubuntu6 [93.8 kB] 221s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-gi ppc64el 3.47.0-3build1 [261 kB] 221s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-dbus ppc64el 1.3.2-5build2 [107 kB] 221s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnetplan1 ppc64el 1.0-1 [136 kB] 221s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-netplan ppc64el 1.0-1 [21.8 kB] 221s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el netplan-generator ppc64el 1.0-1 [59.2 kB] 222s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools-bin ppc64el 0.142ubuntu23 [21.0 kB] 222s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools-core all 0.142ubuntu23 [50.1 kB] 222s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools all 0.142ubuntu23 [9058 B] 222s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el netplan.io ppc64el 1.0-1 [66.2 kB] 222s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxmlb2 ppc64el 0.3.15-1build1 [82.6 kB] 222s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgpgme11t64 ppc64el 1.18.0-4.1ubuntu3 [173 kB] 222s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libvolume-key1 ppc64el 0.3.12-7build1 [47.9 kB] 222s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqrtr-glib0 ppc64el 1.2.2-1ubuntu3 [18.3 kB] 222s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqmi-glib5 ppc64el 1.35.2-0ubuntu1 [966 kB] 222s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqmi-proxy ppc64el 1.35.2-0ubuntu1 [6208 B] 222s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpolkit-agent-1-0 ppc64el 124-1ubuntu1 [18.8 kB] 222s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpolkit-gobject-1-0 ppc64el 124-1ubuntu1 [52.7 kB] 222s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmm-glib0 ppc64el 1.23.4-0ubuntu1 [282 kB] 222s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmbim-glib4 ppc64el 1.31.2-0ubuntu2 [253 kB] 222s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmbim-proxy ppc64el 1.31.2-0ubuntu2 [6274 B] 222s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjson-glib-1.0-common all 1.8.0-2build1 [4210 B] 222s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjson-glib-1.0-0 ppc64el 1.8.0-2build1 [73.6 kB] 222s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgusb2 ppc64el 0.4.8-1build1 [43.0 kB] 222s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgudev-1.0-0 ppc64el 1:238-3ubuntu2 [15.8 kB] 222s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el tnftp ppc64el 20230507-2build1 [116 kB] 222s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el tcpdump ppc64el 4.99.4-3ubuntu2 [543 kB] 222s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd0 ppc64el 255.4-1ubuntu5 [526 kB] 222s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-dev all 255.4-1ubuntu5 [103 kB] 222s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnss-systemd ppc64el 255.4-1ubuntu5 [208 kB] 222s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudev1 ppc64el 255.4-1ubuntu5 [200 kB] 222s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 222s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd ppc64el 255.4-1ubuntu5 [3771 kB] 223s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el udev ppc64el 255.4-1ubuntu5 [2038 kB] 223s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-sysv ppc64el 255.4-1ubuntu5 [11.9 kB] 223s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-systemd ppc64el 255.4-1ubuntu5 [304 kB] 223s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-timesyncd ppc64el 255.4-1ubuntu5 [37.9 kB] 223s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd-shared ppc64el 255.4-1ubuntu5 [2351 kB] 223s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-resolved ppc64el 255.4-1ubuntu5 [346 kB] 223s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el sudo ppc64el 1.9.15p5-3ubuntu3 [1005 kB] 223s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el rsync ppc64el 3.2.7-1build1 [487 kB] 223s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-cryptography ppc64el 41.0.7-4build2 [860 kB] 223s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 223s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-sftp-server ppc64el 1:9.6p1-3ubuntu11 [43.7 kB] 223s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-client ppc64el 1:9.6p1-3ubuntu11 [1112 kB] 223s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-server ppc64el 1:9.6p1-3ubuntu11 [627 kB] 223s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssh-4 ppc64el 0.10.6-2build1 [234 kB] 223s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-modules ppc64el 2.1.28+dfsg1-5ubuntu1 [83.1 kB] 223s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.12 ppc64el 3.12.2-4build3 [645 kB] 223s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.12-minimal ppc64el 3.12.2-4build3 [2447 kB] 224s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.12-minimal ppc64el 3.12.2-4build3 [836 kB] 224s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-ieee1275 ppc64el 2.12-1ubuntu5 [63.1 kB] 224s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub2-common ppc64el 2.12-1ubuntu5 [752 kB] 224s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-common ppc64el 2.12-1ubuntu5 [2356 kB] 224s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-ieee1275-bin ppc64el 2.12-1ubuntu5 [687 kB] 224s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libparted2t64 ppc64el 3.6-3.1build2 [184 kB] 224s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el parted ppc64el 3.6-3.1build2 [58.9 kB] 224s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.11 ppc64el 3.11.8-1build4 [589 kB] 224s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.11-minimal ppc64el 3.11.8-1build4 [2292 kB] 224s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.11-minimal ppc64el 3.11.8-1build4 [846 kB] 224s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.11-stdlib ppc64el 3.11.8-1build4 [1977 kB] 224s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg-utils ppc64el 2.4.4-2ubuntu15 [123 kB] 224s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg-agent ppc64el 2.4.4-2ubuntu15 [275 kB] 224s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg-wks-client ppc64el 2.4.4-2ubuntu15 [85.0 kB] 224s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg ppc64el 2.4.4-2ubuntu15 [706 kB] 224s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libnpth0t64 ppc64el 1.6-3.1 [8864 B] 224s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgv ppc64el 2.4.4-2ubuntu15 [198 kB] 224s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dirmngr ppc64el 2.4.4-2ubuntu15 [391 kB] 224s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg all 2.4.4-2ubuntu15 [359 kB] 224s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el keyboxd ppc64el 2.4.4-2ubuntu15 [94.3 kB] 224s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgconf ppc64el 2.4.4-2ubuntu15 [115 kB] 224s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgsm ppc64el 2.4.4-2ubuntu15 [292 kB] 224s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libreadline8t64 ppc64el 8.2-4 [182 kB] 224s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gawk ppc64el 1:5.2.1-2build2 [528 kB] 224s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fdisk ppc64el 2.39.3-9ubuntu2 [132 kB] 224s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bc ppc64el 1.07.1-3ubuntu2 [93.2 kB] 224s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.12-stdlib ppc64el 3.12.2-4build3 [2082 kB] 224s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-base ppc64el 5.38.2-3.2 [1916 kB] 224s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 224s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-gdbm ppc64el 3.12.2-3ubuntu1.1 [19.8 kB] 224s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el man-db ppc64el 2.12.0-3build4 [1274 kB] 224s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm6t64 ppc64el 1.23-5.1 [41.9 kB] 224s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm-compat4t64 ppc64el 1.23-5.1 [6972 B] 224s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libperl5.38t64 ppc64el 5.38.2-3.2 [4957 kB] 224s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl ppc64el 5.38.2-3.2 [231 kB] 224s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-6 [875 kB] 224s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-5ubuntu1 [23.4 kB] 224s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-5ubuntu1 [68.0 kB] 224s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnvme1t64 ppc64el 1.8-3 [98.2 kB] 225s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el wget ppc64el 1.21.4-1ubuntu2 [382 kB] 225s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu8 [428 kB] 225s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el curl ppc64el 8.5.0-2ubuntu8 [234 kB] 225s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1 [59.0 kB] 225s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libarchive13t64 ppc64el 3.7.2-1.1ubuntu2 [518 kB] 225s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fwupd ppc64el 1.9.15-2 [4634 kB] 226s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl3t64-gnutls ppc64el 8.5.0-2ubuntu8 [419 kB] 226s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfwupd2 ppc64el 1.9.15-2 [136 kB] 226s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev3 ppc64el 3.1.0-1build1 [55.2 kB] 226s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-utils3 ppc64el 3.1.0-1build1 [20.3 kB] 226s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-swap3 ppc64el 3.1.0-1build1 [8616 B] 226s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-part3 ppc64el 3.1.0-1build1 [17.5 kB] 226s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-nvme3 ppc64el 3.1.0-1build1 [20.1 kB] 226s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-mdraid3 ppc64el 3.1.0-1build1 [14.3 kB] 226s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-loop3 ppc64el 3.1.0-1build1 [7742 B] 226s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B] 226s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el logsave ppc64el 1.47.0-2.4~exp1ubuntu2 [22.9 kB] 226s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libext2fs2t64 ppc64el 1.47.0-2.4~exp1ubuntu2 [270 kB] 226s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el e2fsprogs ppc64el 1.47.0-2.4~exp1ubuntu2 [663 kB] 226s Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libreiserfscore0t64 ppc64el 1:3.6.27-7.1 [92.7 kB] 226s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el btrfs-progs ppc64el 6.6.3-1.1build1 [1352 kB] 226s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-fs3 ppc64el 3.1.0-1build1 [41.2 kB] 226s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-crypto3 ppc64el 3.1.0-1build1 [22.5 kB] 226s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bolt ppc64el 0.9.6-2build1 [171 kB] 226s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-0t64 ppc64el 2.79.3-3ubuntu5 [1773 kB] 226s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjcat1 ppc64el 0.2.0-2build2 [40.0 kB] 226s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libldap2 ppc64el 2.6.7+dfsg-1~exp1ubuntu6 [233 kB] 226s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ubuntu-pro-client-l10n ppc64el 31.2.2 [19.4 kB] 226s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ubuntu-pro-client ppc64el 31.2.2 [215 kB] 226s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-apt ppc64el 2.7.7 [181 kB] 226s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt-utils ppc64el 2.7.14 [226 kB] 226s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapt-pkg6.0t64 ppc64el 2.7.14 [1063 kB] 226s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnettle8t64 ppc64el 3.9.1-2.2 [226 kB] 226s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libhogweed6t64 ppc64el 3.9.1-2.2 [208 kB] 226s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgnutls30t64 ppc64el 3.8.3-1.1ubuntu2 [1154 kB] 226s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt ppc64el 2.7.14 [1401 kB] 227s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build6 [64.4 kB] 227s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblzma5 ppc64el 5.6.0-0.2 [156 kB] 227s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblkid1 ppc64el 2.39.3-9ubuntu2 [155 kB] 227s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el kmod ppc64el 31+20240202-2ubuntu4 [122 kB] 227s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkmod2 ppc64el 31+20240202-2ubuntu4 [64.4 kB] 227s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libselinux1 ppc64el 3.5-2ubuntu1 [101 kB] 227s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libaudit-common all 1:3.1.2-2.1 [5674 B] 227s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcap-ng0 ppc64el 0.8.4-2build1 [16.2 kB] 227s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libaudit1 ppc64el 1:3.1.2-2.1 [52.8 kB] 227s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam0g ppc64el 1.5.3-5ubuntu3 [75.7 kB] 227s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-modules-bin ppc64el 1.5.3-5ubuntu3 [57.9 kB] 227s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-modules ppc64el 1.5.3-5ubuntu3 [320 kB] 227s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB] 227s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB] 227s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-user-session ppc64el 1.14.10-4ubuntu2 [9960 B] 227s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapparmor1 ppc64el 4.0.0-beta3-0ubuntu2 [55.0 kB] 227s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libexpat1 ppc64el 2.6.1-2 [101 kB] 227s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB] 227s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-bin ppc64el 1.14.10-4ubuntu2 [48.1 kB] 227s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus ppc64el 1.14.10-4ubuntu2 [26.9 kB] 227s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-daemon ppc64el 1.14.10-4ubuntu2 [136 kB] 227s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdbus-1-3 ppc64el 1.14.10-4ubuntu2 [244 kB] 227s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.185-3ubuntu2 [182 kB] 227s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libuuid1 ppc64el 2.39.3-9ubuntu2 [39.3 kB] 227s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcryptsetup12 ppc64el 2:2.7.0-1ubuntu2 [376 kB] 227s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfdisk1 ppc64el 2.39.3-9ubuntu2 [171 kB] 227s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libseccomp2 ppc64el 2.5.5-1ubuntu2 [62.5 kB] 227s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el mount ppc64el 2.39.3-9ubuntu2 [125 kB] 227s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmount1 ppc64el 2.39.3-9ubuntu2 [169 kB] 227s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3.1ubuntu1 [72.8 kB] 227s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-minimal ppc64el 3.12.2-0ubuntu1 [27.1 kB] 227s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3 ppc64el 3.12.2-0ubuntu1 [24.1 kB] 227s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libplymouth5 ppc64el 24.004.60-1ubuntu6 [166 kB] 227s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpng16-16t64 ppc64el 1.6.43-3 [242 kB] 227s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbrotli1 ppc64el 1.1.0-2build1 [410 kB] 227s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfreetype6 ppc64el 2.13.2+dfsg-1build2 [545 kB] 227s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsqlite3-0 ppc64el 3.45.1-1ubuntu1 [804 kB] 227s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el pinentry-curses ppc64el 1.2.1-3ubuntu4 [38.7 kB] 227s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-14-base ppc64el 14-20240315-1ubuntu1 [47.0 kB] 227s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-s1 ppc64el 14-20240315-1ubuntu1 [39.2 kB] 227s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++6 ppc64el 14-20240315-1ubuntu1 [897 kB] 227s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python-apt-common all 2.7.7 [19.8 kB] 227s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsmartcols1 ppc64el 2.39.3-9ubuntu2 [79.0 kB] 227s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el readline-common all 8.2-4 [56.4 kB] 227s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bsdextrautils ppc64el 2.39.3-9ubuntu2 [78.6 kB] 227s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el groff-base ppc64el 1.23.0-3build1 [1112 kB] 227s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.2-0ubuntu1 [9798 B] 227s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfido2-1 ppc64el 1.14.0-1build1 [111 kB] 227s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-6ubuntu1 [185 kB] 227s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkrb5-3 ppc64el 1.20.1-6ubuntu1 [432 kB] 228s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkrb5support0 ppc64el 1.20.1-6ubuntu1 [38.5 kB] 228s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libk5crypto3 ppc64el 1.20.1-6ubuntu1 [108 kB] 228s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcom-err2 ppc64el 1.47.0-2.4~exp1ubuntu2 [22.9 kB] 228s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libproc2-0 ppc64el 2:4.0.4-4ubuntu2 [68.8 kB] 228s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el procps ppc64el 2:4.0.4-4ubuntu2 [736 kB] 228s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnghttp2-14 ppc64el 1.59.0-1build1 [89.0 kB] 228s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dpkg ppc64el 1.22.6ubuntu5 [1343 kB] 228s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el util-linux ppc64el 2.39.3-9ubuntu2 [1195 kB] 228s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3ubuntu2 [840 kB] 228s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbpf1 ppc64el 1:1.3.0-2build1 [216 kB] 228s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el iproute2 ppc64el 6.1.0-1ubuntu5 [1384 kB] 228s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libelf1t64 ppc64el 0.190-1.1build2 [69.3 kB] 228s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dhcpcd-base ppc64el 1:10.0.6-1ubuntu2 [276 kB] 228s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el file ppc64el 1:5.45-3 [22.7 kB] 228s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmagic-mgc ppc64el 1:5.45-3 [307 kB] 228s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmagic1t64 ppc64el 1:5.45-3 [106 kB] 228s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc-common all 1.3.4+ds-1.1 [8018 B] 229s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el lsof ppc64el 4.95.0-1build2 [256 kB] 229s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnsl2 ppc64el 1.3.0-3build2 [48.9 kB] 229s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc3t64 ppc64el 1.3.4+ds-1.1 [102 kB] 229s Get:206 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el multipath-tools ppc64el 0.9.4-5ubuntu6 [341 kB] 230s Get:207 http://ftpmaster.internal/ubuntu noble/main ppc64el liburcu8t64 ppc64el 0.14.0-3.1 [73.6 kB] 230s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-host ppc64el 1:9.18.24-0ubuntu3 [54.5 kB] 230s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-dnsutils ppc64el 1:9.18.24-0ubuntu3 [167 kB] 230s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-libs ppc64el 1:9.18.24-0ubuntu3 [1436 kB] 231s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libuv1t64 ppc64el 1.48.0-1.1 [117 kB] 231s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblocale-gettext-perl ppc64el 1.07-6ubuntu4 [16.1 kB] 231s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el uuid-runtime ppc64el 2.39.3-9ubuntu2 [33.8 kB] 231s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdebconfclient0 ppc64el 0.271ubuntu2 [11.2 kB] 231s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsemanage-common all 3.5-1build4 [10.1 kB] 231s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsemanage2 ppc64el 3.5-1build4 [115 kB] 231s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el install-info ppc64el 7.1-3build1 [64.5 kB] 231s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13-base ppc64el 13.2.0-21ubuntu1 [48.3 kB] 231s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libss2 ppc64el 1.47.0-2.4~exp1ubuntu2 [18.0 kB] 231s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dmsetup ppc64el 2:1.02.185-3ubuntu2 [91.8 kB] 231s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el eject ppc64el 2.39.3-9ubuntu2 [28.2 kB] 231s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el krb5-locales all 1.20.1-6ubuntu1 [13.8 kB] 231s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 231s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libslang2 ppc64el 2.3.3-3build1 [501 kB] 231s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtext-charwidth-perl ppc64el 0.04-11build2 [9506 B] 231s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtext-iconv-perl ppc64el 1.7-8build2 [13.7 kB] 231s Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-yaml ppc64el 6.0.1-2build1 [123 kB] 231s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-setuptools all 68.1.2-2ubuntu1 [396 kB] 231s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] 231s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el rsyslog ppc64el 8.2312.0-3ubuntu7 [629 kB] 231s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el vim-tiny ppc64el 2:9.1.0016-1ubuntu6 [1042 kB] 232s Get:232 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el vim-common all 2:9.1.0016-1ubuntu6 [385 kB] 232s Get:233 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-user-dirs ppc64el 0.18-1 [20.0 kB] 232s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el xxd ppc64el 2:9.1.0016-1ubuntu6 [63.7 kB] 232s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apparmor ppc64el 4.0.0-beta3-0ubuntu2 [747 kB] 232s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ftp all 20230507-2build1 [4724 B] 232s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el inetutils-telnet ppc64el 2:2.5-3ubuntu3 [115 kB] 232s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el info ppc64el 7.1-3build1 [188 kB] 232s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libusb-1.0-0 ppc64el 2:1.0.27-1 [64.0 kB] 232s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxmuu1 ppc64el 2:1.1.3-3build1 [9488 B] 232s Get:241 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el lshw ppc64el 02.19.git.2021.06.19.996aaad9c7-2build2 [334 kB] 232s Get:242 http://ftpmaster.internal/ubuntu noble/main ppc64el manpages all 6.05.01-1 [1340 kB] 232s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el mtr-tiny ppc64el 0.95-1.1build1 [62.8 kB] 232s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el plymouth-theme-ubuntu-text ppc64el 24.004.60-1ubuntu6 [11.1 kB] 232s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el plymouth ppc64el 24.004.60-1ubuntu6 [155 kB] 232s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el telnet all 0.17+2.5-3ubuntu3 [3682 B] 232s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el usb.ids all 2024.03.18-1 [223 kB] 232s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el xz-utils ppc64el 5.6.0-0.2 [281 kB] 232s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libctf0 ppc64el 2.42-4ubuntu1 [112 kB] 232s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libctf-nobfd0 ppc64el 2.42-4ubuntu1 [112 kB] 232s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.42-4ubuntu1 [2473 kB] 232s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbinutils ppc64el 2.42-4ubuntu1 [699 kB] 233s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils ppc64el 2.42-4ubuntu1 [3078 B] 233s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el binutils-common ppc64el 2.42-4ubuntu1 [217 kB] 233s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsframe1 ppc64el 2.42-4ubuntu1 [16.0 kB] 233s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libllvm18 ppc64el 1:18.1.2-1ubuntu2 [28.9 MB] 234s Get:257 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libclang-cpp18 ppc64el 1:18.1.2-1ubuntu2 [14.6 MB] 235s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libbpfcc ppc64el 0.29.1+ds-1ubuntu4 [707 kB] 235s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-bpfcc all 0.29.1+ds-1ubuntu4 [40.2 kB] 235s Get:260 http://ftpmaster.internal/ubuntu noble/main ppc64el ieee-data all 20220827.1 [2113 kB] 235s Get:261 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-netaddr all 0.8.0-2ubuntu1 [319 kB] 235s Get:262 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el bpfcc-tools all 0.29.1+ds-1ubuntu4 [687 kB] 235s Get:263 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libclang1-18 ppc64el 1:18.1.2-1ubuntu2 [8725 kB] 236s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdw1t64 ppc64el 0.190-1.1build2 [301 kB] 236s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el bpftrace ppc64el 0.20.2-1ubuntu1 [1058 kB] 236s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cryptsetup-bin ppc64el 2:2.7.0-1ubuntu2 [227 kB] 236s Get:267 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dpkg-dev all 1.22.6ubuntu5 [1074 kB] 236s Get:268 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdpkg-perl all 1.22.6ubuntu5 [269 kB] 236s Get:269 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 236s Get:270 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 236s Get:271 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu1 [37.4 kB] 236s Get:272 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libprotobuf-c1 ppc64el 1.4.1-1ubuntu3 [25.9 kB] 236s Get:273 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB] 236s Get:274 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libibverbs1 ppc64el 50.0-2build1 [74.4 kB] 236s Get:275 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ibverbs-providers ppc64el 50.0-2build1 [420 kB] 236s Get:276 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el jq ppc64el 1.7.1-3 [66.1 kB] 236s Get:277 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjq1 ppc64el 1.7.1-3 [173 kB] 236s Get:278 http://ftpmaster.internal/ubuntu noble/main ppc64el libaio1t64 ppc64el 0.3.113-6 [8188 B] 236s Get:279 http://ftpmaster.internal/ubuntu noble/main ppc64el libatm1t64 ppc64el 1:2.5.1-5.1 [26.9 kB] 236s Get:280 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu6 [21.3 kB] 236s Get:281 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu1 [190 kB] 236s Get:282 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 236s Get:283 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 236s Get:284 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 236s Get:285 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 236s Get:286 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 236s Get:287 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4build2 [28.8 kB] 236s Get:288 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libwebp7 ppc64el 1.3.2-0.4build2 [312 kB] 236s Get:289 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu1 [274 kB] 236s Get:290 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxpm4 ppc64el 1:3.5.17-1build1 [50.2 kB] 236s Get:291 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgd3 ppc64el 2.3.3-9ubuntu3 [162 kB] 236s Get:292 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-devtools ppc64el 2.39-0ubuntu6 [29.6 kB] 236s Get:293 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-libc-dev ppc64el 6.8.0-20.20 [1586 kB] 236s Get:294 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB] 236s Get:295 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB] 236s Get:296 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu6 [2102 kB] 236s Get:297 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libevent-core-2.1-7 ppc64el 2.1.12-stable-9build1 [110 kB] 236s Get:298 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libftdi1-2 ppc64el 1.5-6build4 [32.5 kB] 236s Get:299 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB] 236s Get:300 http://ftpmaster.internal/ubuntu noble/main ppc64el libunwind8 ppc64el 1.6.2-3 [59.9 kB] 236s Get:301 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-modules-6.8.0-20-generic ppc64el 6.8.0-20.20 [31.3 MB] 238s Get:302 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-6.8.0-20-generic ppc64el 6.8.0-20.20 [63.9 MB] 241s Get:303 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-modules-extra-6.8.0-20-generic ppc64el 6.8.0-20.20 [103 MB] 259s Get:304 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-generic ppc64el 6.8.0-20.20+1 [1734 B] 259s Get:305 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-generic ppc64el 6.8.0-20.20+1 [9698 B] 259s Get:306 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-virtual ppc64el 6.8.0-20.20+1 [1686 B] 259s Get:307 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-virtual ppc64el 6.8.0-20.20+1 [9702 B] 259s Get:308 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-virtual ppc64el 6.8.0-20.20+1 [1648 B] 259s Get:309 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB] 262s Get:310 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-6.8.0-20-generic ppc64el 6.8.0-20.20 [3728 kB] 262s Get:311 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-generic ppc64el 6.8.0-20.20+1 [9612 B] 262s Get:312 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-common all 6.8.0-20.20 [437 kB] 262s Get:313 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-6.8.0-20 ppc64el 6.8.0-20.20 [2924 kB] 263s Get:314 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-6.8.0-20-generic ppc64el 6.8.0-20.20 [1730 B] 263s Get:315 http://ftpmaster.internal/ubuntu noble/main ppc64el manpages-dev all 6.05.01-1 [2018 kB] 263s Get:316 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-distutils all 3.12.2-3ubuntu1.1 [133 kB] 263s Get:317 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB] 263s Get:318 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-pyrsistent ppc64el 0.20.0-1build1 [60.4 kB] 263s Get:319 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-typing-extensions all 4.10.0-1 [60.7 kB] 263s Get:320 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-kernel-accessories ppc64el 1.536build1 [10.5 kB] 263s Get:321 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el kpartx ppc64el 0.9.4-5ubuntu6 [34.4 kB] 263s Preconfiguring packages ... 264s Fetched 390 MB in 43s (9047 kB/s) 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 264s Preparing to unpack .../motd-news-config_13ubuntu8_all.deb ... 264s Unpacking motd-news-config (13ubuntu8) over (13ubuntu7) ... 264s Preparing to unpack .../base-files_13ubuntu8_ppc64el.deb ... 264s Unpacking base-files (13ubuntu8) over (13ubuntu7) ... 264s Setting up base-files (13ubuntu8) ... 265s motd-news.service is a disabled or a static unit not running, not starting it. 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 265s Preparing to unpack .../bash_5.2.21-2ubuntu3_ppc64el.deb ... 265s Unpacking bash (5.2.21-2ubuntu3) over (5.2.21-2ubuntu2) ... 265s Setting up bash (5.2.21-2ubuntu3) ... 265s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 265s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_ppc64el.deb ... 265s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ... 265s Setting up bsdutils (1:2.39.3-9ubuntu2) ... 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 265s Preparing to unpack .../coreutils_9.4-3ubuntu3_ppc64el.deb ... 265s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ... 265s Setting up coreutils (9.4-3ubuntu3) ... 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 265s Preparing to unpack .../00-libudisks2-0_2.10.1-6_ppc64el.deb ... 265s Unpacking libudisks2-0:ppc64el (2.10.1-6) over (2.10.1-1ubuntu2) ... 265s Preparing to unpack .../01-udisks2_2.10.1-6_ppc64el.deb ... 265s Unpacking udisks2 (2.10.1-6) over (2.10.1-1ubuntu2) ... 265s Preparing to unpack .../02-shared-mime-info_2.4-1build1_ppc64el.deb ... 265s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ... 265s Preparing to unpack .../03-gir1.2-girepository-2.0_1.79.1-1ubuntu6_ppc64el.deb ... 265s Unpacking gir1.2-girepository-2.0:ppc64el (1.79.1-1ubuntu6) over (1.79.1-1) ... 265s Preparing to unpack .../04-gir1.2-glib-2.0_2.79.3-3ubuntu5_ppc64el.deb ... 265s Unpacking gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 265s Preparing to unpack .../05-libgirepository-1.0-1_1.79.1-1ubuntu6_ppc64el.deb ... 265s Unpacking libgirepository-1.0-1:ppc64el (1.79.1-1ubuntu6) over (1.79.1-1) ... 265s Preparing to unpack .../06-python3-gi_3.47.0-3build1_ppc64el.deb ... 265s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ... 265s Preparing to unpack .../07-python3-dbus_1.3.2-5build2_ppc64el.deb ... 265s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ... 265s Selecting previously unselected package libnetplan1:ppc64el. 265s Preparing to unpack .../08-libnetplan1_1.0-1_ppc64el.deb ... 265s Unpacking libnetplan1:ppc64el (1.0-1) ... 265s Preparing to unpack .../09-python3-netplan_1.0-1_ppc64el.deb ... 265s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ... 265s Preparing to unpack .../10-netplan-generator_1.0-1_ppc64el.deb ... 265s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 265s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ... 265s Preparing to unpack .../11-initramfs-tools-bin_0.142ubuntu23_ppc64el.deb ... 265s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ... 265s Preparing to unpack .../12-initramfs-tools-core_0.142ubuntu23_all.deb ... 265s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ... 265s Preparing to unpack .../13-initramfs-tools_0.142ubuntu23_all.deb ... 265s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ... 265s Preparing to unpack .../14-netplan.io_1.0-1_ppc64el.deb ... 265s Unpacking netplan.io (1.0-1) over (0.107.1-3) ... 265s Preparing to unpack .../15-libxmlb2_0.3.15-1build1_ppc64el.deb ... 265s Unpacking libxmlb2:ppc64el (0.3.15-1build1) over (0.3.15-1) ... 265s dpkg: libgpgme11:ppc64el: dependency problems, but removing anyway as you requested: 265s libvolume-key1:ppc64el depends on libgpgme11 (>= 1.4.1). 265s libjcat1:ppc64el depends on libgpgme11 (>= 1.2.0). 265s 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 265s Removing libgpgme11:ppc64el (1.18.0-4ubuntu1) ... 265s Selecting previously unselected package libgpgme11t64:ppc64el. 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70151 files and directories currently installed.) 266s Preparing to unpack .../00-libgpgme11t64_1.18.0-4.1ubuntu3_ppc64el.deb ... 266s Unpacking libgpgme11t64:ppc64el (1.18.0-4.1ubuntu3) ... 266s Preparing to unpack .../01-libvolume-key1_0.3.12-7build1_ppc64el.deb ... 266s Unpacking libvolume-key1:ppc64el (0.3.12-7build1) over (0.3.12-5build2) ... 266s Preparing to unpack .../02-libqrtr-glib0_1.2.2-1ubuntu3_ppc64el.deb ... 266s Unpacking libqrtr-glib0:ppc64el (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ... 266s Preparing to unpack .../03-libqmi-glib5_1.35.2-0ubuntu1_ppc64el.deb ... 266s Unpacking libqmi-glib5:ppc64el (1.35.2-0ubuntu1) over (1.34.0-2) ... 266s Preparing to unpack .../04-libqmi-proxy_1.35.2-0ubuntu1_ppc64el.deb ... 266s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ... 266s Preparing to unpack .../05-libpolkit-agent-1-0_124-1ubuntu1_ppc64el.deb ... 266s Unpacking libpolkit-agent-1-0:ppc64el (124-1ubuntu1) over (124-1) ... 266s Preparing to unpack .../06-libpolkit-gobject-1-0_124-1ubuntu1_ppc64el.deb ... 266s Unpacking libpolkit-gobject-1-0:ppc64el (124-1ubuntu1) over (124-1) ... 266s Preparing to unpack .../07-libmm-glib0_1.23.4-0ubuntu1_ppc64el.deb ... 266s Unpacking libmm-glib0:ppc64el (1.23.4-0ubuntu1) over (1.22.0-3) ... 266s Preparing to unpack .../08-libmbim-glib4_1.31.2-0ubuntu2_ppc64el.deb ... 266s Unpacking libmbim-glib4:ppc64el (1.31.2-0ubuntu2) over (1.30.0-1) ... 266s Preparing to unpack .../09-libmbim-proxy_1.31.2-0ubuntu2_ppc64el.deb ... 266s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ... 266s Preparing to unpack .../10-libjson-glib-1.0-common_1.8.0-2build1_all.deb ... 266s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ... 266s Preparing to unpack .../11-libjson-glib-1.0-0_1.8.0-2build1_ppc64el.deb ... 266s Unpacking libjson-glib-1.0-0:ppc64el (1.8.0-2build1) over (1.8.0-2) ... 266s Preparing to unpack .../12-libgusb2_0.4.8-1build1_ppc64el.deb ... 266s Unpacking libgusb2:ppc64el (0.4.8-1build1) over (0.4.8-1) ... 266s Preparing to unpack .../13-libgudev-1.0-0_1%3a238-3ubuntu2_ppc64el.deb ... 266s Unpacking libgudev-1.0-0:ppc64el (1:238-3ubuntu2) over (1:238-3) ... 266s Preparing to unpack .../14-tnftp_20230507-2build1_ppc64el.deb ... 266s Unpacking tnftp (20230507-2build1) over (20230507-2) ... 266s Preparing to unpack .../15-tcpdump_4.99.4-3ubuntu2_ppc64el.deb ... 266s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ... 266s Preparing to unpack .../16-libsystemd0_255.4-1ubuntu5_ppc64el.deb ... 266s Unpacking libsystemd0:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 266s Setting up libsystemd0:ppc64el (255.4-1ubuntu5) ... 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 266s Preparing to unpack .../systemd-dev_255.4-1ubuntu5_all.deb ... 266s Unpacking systemd-dev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 266s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_ppc64el.deb ... 266s Unpacking libnss-systemd:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 266s Preparing to unpack .../libudev1_255.4-1ubuntu5_ppc64el.deb ... 266s Unpacking libudev1:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 266s Setting up libudev1:ppc64el (255.4-1ubuntu5) ... 266s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 266s wget depends on libssl3 (>= 3.0.0). 266s systemd-resolved depends on libssl3 (>= 3.0.0). 266s systemd depends on libssl3 (>= 3.0.0). 266s sudo depends on libssl3 (>= 3.0.0). 266s rsync depends on libssl3 (>= 3.0.0). 266s python3-cryptography depends on libssl3 (>= 3.0.0). 266s openssl depends on libssl3 (>= 3.0.9). 266s openssh-server depends on libssl3 (>= 3.0.10). 266s openssh-client depends on libssl3 (>= 3.0.10). 266s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 266s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 266s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 266s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 266s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 266s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 266s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 266s libnvme1 depends on libssl3 (>= 3.0.0). 266s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 266s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 266s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 266s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 266s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 266s kmod depends on libssl3 (>= 3.0.0). 266s dhcpcd-base depends on libssl3 (>= 3.0.0). 266s coreutils depends on libssl3 (>= 3.0.0). 266s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 266s 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 266s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 266s Selecting previously unselected package libssl3t64:ppc64el. 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70147 files and directories currently installed.) 266s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 266s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 266s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 266s Preparing to unpack .../systemd_255.4-1ubuntu5_ppc64el.deb ... 266s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 267s Preparing to unpack .../udev_255.4-1ubuntu5_ppc64el.deb ... 267s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 267s Preparing to unpack .../libsystemd-shared_255.4-1ubuntu5_ppc64el.deb ... 267s Unpacking libsystemd-shared:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 267s Setting up libsystemd-shared:ppc64el (255.4-1ubuntu5) ... 267s Setting up systemd-dev (255.4-1ubuntu5) ... 267s Setting up systemd (255.4-1ubuntu5) ... 268s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 268s Preparing to unpack .../00-systemd-sysv_255.4-1ubuntu5_ppc64el.deb ... 268s Unpacking systemd-sysv (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 268s Preparing to unpack .../01-libpam-systemd_255.4-1ubuntu5_ppc64el.deb ... 268s Unpacking libpam-systemd:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 268s Preparing to unpack .../02-systemd-timesyncd_255.4-1ubuntu5_ppc64el.deb ... 268s Unpacking systemd-timesyncd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 268s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_ppc64el.deb ... 268s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 268s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_ppc64el.deb ... 268s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ... 268s Preparing to unpack .../05-rsync_3.2.7-1build1_ppc64el.deb ... 268s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ... 268s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_ppc64el.deb ... 268s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ... 268s Preparing to unpack .../07-openssl_3.0.13-0ubuntu2_ppc64el.deb ... 268s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 268s Preparing to unpack .../08-openssh-sftp-server_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 268s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 268s Preparing to unpack .../09-openssh-client_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 268s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 268s Preparing to unpack .../10-openssh-server_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 268s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 268s Preparing to unpack .../11-libssh-4_0.10.6-2build1_ppc64el.deb ... 268s Unpacking libssh-4:ppc64el (0.10.6-2build1) over (0.10.6-2) ... 268s Preparing to unpack .../12-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ... 268s Unpacking libsasl2-modules:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 268s Preparing to unpack .../13-python3.12_3.12.2-4build3_ppc64el.deb ... 268s Unpacking python3.12 (3.12.2-4build3) over (3.12.2-1) ... 268s Preparing to unpack .../14-python3.12-minimal_3.12.2-4build3_ppc64el.deb ... 268s Unpacking python3.12-minimal (3.12.2-4build3) over (3.12.2-1) ... 268s Preparing to unpack .../15-libpython3.12-minimal_3.12.2-4build3_ppc64el.deb ... 268s Unpacking libpython3.12-minimal:ppc64el (3.12.2-4build3) over (3.12.2-1) ... 268s Preparing to unpack .../16-grub-ieee1275_2.12-1ubuntu5_ppc64el.deb ... 268s Unpacking grub-ieee1275 (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 269s Preparing to unpack .../17-grub2-common_2.12-1ubuntu5_ppc64el.deb ... 269s Unpacking grub2-common (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 269s Preparing to unpack .../18-grub-common_2.12-1ubuntu5_ppc64el.deb ... 269s Unpacking grub-common (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 269s Preparing to unpack .../19-grub-ieee1275-bin_2.12-1ubuntu5_ppc64el.deb ... 269s Unpacking grub-ieee1275-bin (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 269s dpkg: libparted2:ppc64el: dependency problems, but removing anyway as you requested: 269s parted depends on libparted2 (= 3.6-3). 269s 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 269s Removing libparted2:ppc64el (3.6-3) ... 269s Selecting previously unselected package libparted2t64:ppc64el. 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70154 files and directories currently installed.) 269s Preparing to unpack .../0-libparted2t64_3.6-3.1build2_ppc64el.deb ... 269s Unpacking libparted2t64:ppc64el (3.6-3.1build2) ... 269s Preparing to unpack .../1-parted_3.6-3.1build2_ppc64el.deb ... 269s Unpacking parted (3.6-3.1build2) over (3.6-3) ... 269s Preparing to unpack .../2-python3.11_3.11.8-1build4_ppc64el.deb ... 269s Unpacking python3.11 (3.11.8-1build4) over (3.11.8-1) ... 269s Preparing to unpack .../3-python3.11-minimal_3.11.8-1build4_ppc64el.deb ... 269s Unpacking python3.11-minimal (3.11.8-1build4) over (3.11.8-1) ... 269s Preparing to unpack .../4-libpython3.11-minimal_3.11.8-1build4_ppc64el.deb ... 269s Unpacking libpython3.11-minimal:ppc64el (3.11.8-1build4) over (3.11.8-1) ... 269s Preparing to unpack .../5-libpython3.11-stdlib_3.11.8-1build4_ppc64el.deb ... 269s Unpacking libpython3.11-stdlib:ppc64el (3.11.8-1build4) over (3.11.8-1) ... 269s Preparing to unpack .../6-gnupg-utils_2.4.4-2ubuntu15_ppc64el.deb ... 269s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 269s Preparing to unpack .../7-gpg-agent_2.4.4-2ubuntu15_ppc64el.deb ... 269s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 269s Preparing to unpack .../8-gpg-wks-client_2.4.4-2ubuntu15_ppc64el.deb ... 269s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 269s Preparing to unpack .../9-gpg_2.4.4-2ubuntu15_ppc64el.deb ... 269s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 269s dpkg: libnpth0:ppc64el: dependency problems, but removing anyway as you requested: 269s keyboxd depends on libnpth0 (>= 0.90). 269s gpgv depends on libnpth0 (>= 0.90). 269s gpgsm depends on libnpth0 (>= 0.90). 269s dirmngr depends on libnpth0 (>= 0.90). 269s 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70159 files and directories currently installed.) 270s Removing libnpth0:ppc64el (1.6-3build2) ... 270s Selecting previously unselected package libnpth0t64:ppc64el. 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70154 files and directories currently installed.) 270s Preparing to unpack .../libnpth0t64_1.6-3.1_ppc64el.deb ... 270s Unpacking libnpth0t64:ppc64el (1.6-3.1) ... 270s Setting up libnpth0t64:ppc64el (1.6-3.1) ... 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 270s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_ppc64el.deb ... 270s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 270s Setting up gpgv (2.4.4-2ubuntu15) ... 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 270s Preparing to unpack .../dirmngr_2.4.4-2ubuntu15_ppc64el.deb ... 270s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 270s Preparing to unpack .../gnupg_2.4.4-2ubuntu15_all.deb ... 270s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 270s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_ppc64el.deb ... 270s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 270s Preparing to unpack .../gpgconf_2.4.4-2ubuntu15_ppc64el.deb ... 270s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 270s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_ppc64el.deb ... 270s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 270s dpkg: libreadline8:ppc64el: dependency problems, but removing anyway as you requested: 270s libpython3.12-stdlib:ppc64el depends on libreadline8 (>= 7.0~beta). 270s gawk depends on libreadline8 (>= 6.0). 270s fdisk depends on libreadline8 (>= 6.0). 270s bc depends on libreadline8 (>= 6.0). 270s 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 270s Removing libreadline8:ppc64el (8.2-3) ... 270s Selecting previously unselected package libreadline8t64:ppc64el. 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70148 files and directories currently installed.) 270s Preparing to unpack .../libreadline8t64_8.2-4_ppc64el.deb ... 270s Adding 'diversion of /lib/powerpc64le-linux-gnu/libhistory.so.8 to /lib/powerpc64le-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 270s Adding 'diversion of /lib/powerpc64le-linux-gnu/libhistory.so.8.2 to /lib/powerpc64le-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 270s Adding 'diversion of /lib/powerpc64le-linux-gnu/libreadline.so.8 to /lib/powerpc64le-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 270s Adding 'diversion of /lib/powerpc64le-linux-gnu/libreadline.so.8.2 to /lib/powerpc64le-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 270s Unpacking libreadline8t64:ppc64el (8.2-4) ... 270s Setting up libreadline8t64:ppc64el (8.2-4) ... 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 270s Preparing to unpack .../gawk_1%3a5.2.1-2build2_ppc64el.deb ... 270s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ... 270s Preparing to unpack .../fdisk_2.39.3-9ubuntu2_ppc64el.deb ... 270s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 270s Preparing to unpack .../bc_1.07.1-3ubuntu2_ppc64el.deb ... 270s Unpacking bc (1.07.1-3ubuntu2) over (1.07.1-3build1) ... 270s Preparing to unpack .../libpython3.12-stdlib_3.12.2-4build3_ppc64el.deb ... 270s Unpacking libpython3.12-stdlib:ppc64el (3.12.2-4build3) over (3.12.2-1) ... 270s Preparing to unpack .../perl-base_5.38.2-3.2_ppc64el.deb ... 270s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 271s Setting up perl-base (5.38.2-3.2) ... 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70166 files and directories currently installed.) 271s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... 271s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 271s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_ppc64el.deb ... 271s Unpacking python3-gdbm:ppc64el (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 271s Preparing to unpack .../man-db_2.12.0-3build4_ppc64el.deb ... 271s Unpacking man-db (2.12.0-3build4) over (2.12.0-3) ... 271s dpkg: libgdbm-compat4:ppc64el: dependency problems, but removing anyway as you requested: 271s libperl5.38:ppc64el depends on libgdbm-compat4 (>= 1.18-3). 271s 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70166 files and directories currently installed.) 271s Removing libgdbm-compat4:ppc64el (1.23-5) ... 271s dpkg: libgdbm6:ppc64el: dependency problems, but removing anyway as you requested: 271s libperl5.38:ppc64el depends on libgdbm6 (>= 1.21). 271s 271s Removing libgdbm6:ppc64el (1.23-5) ... 271s Selecting previously unselected package libgdbm6t64:ppc64el. 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 271s Preparing to unpack .../libgdbm6t64_1.23-5.1_ppc64el.deb ... 271s Unpacking libgdbm6t64:ppc64el (1.23-5.1) ... 271s Selecting previously unselected package libgdbm-compat4t64:ppc64el. 271s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_ppc64el.deb ... 271s Unpacking libgdbm-compat4t64:ppc64el (1.23-5.1) ... 271s dpkg: libperl5.38:ppc64el: dependency problems, but removing anyway as you requested: 271s perl depends on libperl5.38 (= 5.38.2-3). 271s 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 271s Removing libperl5.38:ppc64el (5.38.2-3) ... 271s Selecting previously unselected package libperl5.38t64:ppc64el. 271s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69645 files and directories currently installed.) 271s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_ppc64el.deb ... 271s Unpacking libperl5.38t64:ppc64el (5.38.2-3.2) ... 272s Preparing to unpack .../perl_5.38.2-3.2_ppc64el.deb ... 272s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ... 272s dpkg: libdb5.3:ppc64el: dependency problems, but removing anyway as you requested: 272s libsasl2-modules-db:ppc64el depends on libdb5.3. 272s libpam-modules:ppc64el depends on libdb5.3. 272s iproute2 depends on libdb5.3. 272s apt-utils depends on libdb5.3. 272s 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 272s Removing libdb5.3:ppc64el (5.3.28+dfsg2-4) ... 272s Selecting previously unselected package libdb5.3t64:ppc64el. 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70162 files and directories currently installed.) 272s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_ppc64el.deb ... 272s Unpacking libdb5.3t64:ppc64el (5.3.28+dfsg2-6) ... 272s Preparing to unpack .../libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ... 272s Unpacking libsasl2-modules-db:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 272s Preparing to unpack .../libsasl2-2_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ... 272s Unpacking libsasl2-2:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 272s dpkg: libnvme1: dependency problems, but removing anyway as you requested: 272s libblockdev-nvme3:ppc64el depends on libnvme1 (>= 1.7.1). 272s 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 272s Removing libnvme1 (1.8-2) ... 272s Selecting previously unselected package libnvme1t64. 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70161 files and directories currently installed.) 272s Preparing to unpack .../libnvme1t64_1.8-3_ppc64el.deb ... 272s Unpacking libnvme1t64 (1.8-3) ... 272s Preparing to unpack .../wget_1.21.4-1ubuntu2_ppc64el.deb ... 272s Unpacking wget (1.21.4-1ubuntu2) over (1.21.4-1ubuntu1) ... 272s dpkg: libcurl4:ppc64el: dependency problems, but removing anyway as you requested: 272s curl depends on libcurl4 (= 8.5.0-2ubuntu2). 272s 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70169 files and directories currently installed.) 272s Removing libcurl4:ppc64el (8.5.0-2ubuntu2) ... 272s Selecting previously unselected package libcurl4t64:ppc64el. 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70164 files and directories currently installed.) 272s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu8_ppc64el.deb ... 272s Unpacking libcurl4t64:ppc64el (8.5.0-2ubuntu8) ... 272s Preparing to unpack .../curl_8.5.0-2ubuntu8_ppc64el.deb ... 272s Unpacking curl (8.5.0-2ubuntu8) over (8.5.0-2ubuntu2) ... 272s dpkg: libpsl5:ppc64el: dependency problems, but removing anyway as you requested: 272s libcurl3-gnutls:ppc64el depends on libpsl5 (>= 0.16.0). 272s 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70170 files and directories currently installed.) 272s Removing libpsl5:ppc64el (0.21.2-1build1) ... 272s Selecting previously unselected package libpsl5t64:ppc64el. 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 272s Preparing to unpack .../libpsl5t64_0.21.2-1.1_ppc64el.deb ... 272s Unpacking libpsl5t64:ppc64el (0.21.2-1.1) ... 272s dpkg: libarchive13:ppc64el: dependency problems, but removing anyway as you requested: 272s fwupd depends on libarchive13 (>= 3.2.1). 272s 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70171 files and directories currently installed.) 272s Removing libarchive13:ppc64el (3.7.2-1ubuntu2) ... 272s Selecting previously unselected package libarchive13t64:ppc64el. 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 272s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_ppc64el.deb ... 272s Unpacking libarchive13t64:ppc64el (3.7.2-1.1ubuntu2) ... 272s Preparing to unpack .../fwupd_1.9.15-2_ppc64el.deb ... 272s Unpacking fwupd (1.9.15-2) over (1.9.14-1) ... 272s dpkg: libcurl3-gnutls:ppc64el: dependency problems, but removing anyway as you requested: 272s libfwupd2:ppc64el depends on libcurl3-gnutls (>= 7.63.0). 272s 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70172 files and directories currently installed.) 272s Removing libcurl3-gnutls:ppc64el (8.5.0-2ubuntu2) ... 272s Selecting previously unselected package libcurl3t64-gnutls:ppc64el. 272s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 272s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu8_ppc64el.deb ... 272s Unpacking libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu8) ... 272s Preparing to unpack .../01-libfwupd2_1.9.15-2_ppc64el.deb ... 272s Unpacking libfwupd2:ppc64el (1.9.15-2) over (1.9.14-1) ... 273s Preparing to unpack .../02-libblockdev3_3.1.0-1build1_ppc64el.deb ... 273s Unpacking libblockdev3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 273s Preparing to unpack .../03-libblockdev-utils3_3.1.0-1build1_ppc64el.deb ... 273s Unpacking libblockdev-utils3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 273s Preparing to unpack .../04-libblockdev-swap3_3.1.0-1build1_ppc64el.deb ... 273s Unpacking libblockdev-swap3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 273s Preparing to unpack .../05-libblockdev-part3_3.1.0-1build1_ppc64el.deb ... 273s Unpacking libblockdev-part3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 273s Preparing to unpack .../06-libblockdev-nvme3_3.1.0-1build1_ppc64el.deb ... 273s Unpacking libblockdev-nvme3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 273s Preparing to unpack .../07-libblockdev-mdraid3_3.1.0-1build1_ppc64el.deb ... 273s Unpacking libblockdev-mdraid3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 273s Preparing to unpack .../08-libblockdev-loop3_3.1.0-1build1_ppc64el.deb ... 273s Unpacking libblockdev-loop3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 273s Preparing to unpack .../09-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ... 273s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 273s Preparing to unpack .../10-logsave_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 273s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 273s dpkg: libext2fs2:ppc64el: dependency problems, but removing anyway as you requested: 273s libblockdev-fs3:ppc64el depends on libext2fs2 (>= 1.42.11). 273s e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1). 273s btrfs-progs depends on libext2fs2 (>= 1.42). 273s 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70172 files and directories currently installed.) 273s Removing libext2fs2:ppc64el (1.47.0-2ubuntu1) ... 273s Selecting previously unselected package libext2fs2t64:ppc64el. 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 273s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 273s Adding 'diversion of /lib/powerpc64le-linux-gnu/libe2p.so.2 to /lib/powerpc64le-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' 273s Adding 'diversion of /lib/powerpc64le-linux-gnu/libe2p.so.2.3 to /lib/powerpc64le-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' 273s Adding 'diversion of /lib/powerpc64le-linux-gnu/libext2fs.so.2 to /lib/powerpc64le-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' 273s Adding 'diversion of /lib/powerpc64le-linux-gnu/libext2fs.so.2.4 to /lib/powerpc64le-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' 273s Unpacking libext2fs2t64:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 273s Setting up libext2fs2t64:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70181 files and directories currently installed.) 273s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 273s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 273s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested: 273s btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27). 273s 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70181 files and directories currently installed.) 273s Removing libreiserfscore0 (1:3.6.27-7) ... 273s Selecting previously unselected package libreiserfscore0t64. 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70176 files and directories currently installed.) 273s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_ppc64el.deb ... 273s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ... 273s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_ppc64el.deb ... 273s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ... 273s Preparing to unpack .../libblockdev-fs3_3.1.0-1build1_ppc64el.deb ... 273s Unpacking libblockdev-fs3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 273s Preparing to unpack .../libblockdev-crypto3_3.1.0-1build1_ppc64el.deb ... 273s Unpacking libblockdev-crypto3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 273s Preparing to unpack .../bolt_0.9.6-2build1_ppc64el.deb ... 273s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ... 273s dpkg: libglib2.0-0:ppc64el: dependency problems, but removing anyway as you requested: 273s libnetplan0:ppc64el depends on libglib2.0-0 (>= 2.75.3). 273s libjcat1:ppc64el depends on libglib2.0-0 (>= 2.75.3). 273s 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70182 files and directories currently installed.) 273s Removing libglib2.0-0:ppc64el (2.79.2-1~ubuntu1) ... 273s Selecting previously unselected package libglib2.0-0t64:ppc64el. 273s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 273s Preparing to unpack .../0-libglib2.0-0t64_2.79.3-3ubuntu5_ppc64el.deb ... 273s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 273s removed '/var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm' 273s Unpacking libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 273s Preparing to unpack .../1-libjcat1_0.2.0-2build2_ppc64el.deb ... 273s Unpacking libjcat1:ppc64el (0.2.0-2build2) over (0.2.0-2) ... 273s Preparing to unpack .../2-libldap2_2.6.7+dfsg-1~exp1ubuntu6_ppc64el.deb ... 273s Unpacking libldap2:ppc64el (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 273s Preparing to unpack .../3-ubuntu-pro-client-l10n_31.2.2_ppc64el.deb ... 273s Unpacking ubuntu-pro-client-l10n (31.2.2) over (31.1) ... 273s Preparing to unpack .../4-ubuntu-pro-client_31.2.2_ppc64el.deb ... 274s Unpacking ubuntu-pro-client (31.2.2) over (31.1) ... 274s Preparing to unpack .../5-python3-apt_2.7.7_ppc64el.deb ... 274s Unpacking python3-apt (2.7.7) over (2.7.6) ... 274s Preparing to unpack .../6-apt-utils_2.7.14_ppc64el.deb ... 274s Unpacking apt-utils (2.7.14) over (2.7.12) ... 274s dpkg: libapt-pkg6.0:ppc64el: dependency problems, but removing anyway as you requested: 274s apt depends on libapt-pkg6.0 (>= 2.7.12). 274s 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70180 files and directories currently installed.) 274s Removing libapt-pkg6.0:ppc64el (2.7.12) ... 274s dpkg: libnettle8:ppc64el: dependency problems, but removing anyway as you requested: 274s librtmp1:ppc64el depends on libnettle8. 274s libhogweed6:ppc64el depends on libnettle8. 274s libgnutls30:ppc64el depends on libnettle8 (>= 3.9~). 274s 274s Removing libnettle8:ppc64el (3.9.1-2) ... 274s Selecting previously unselected package libapt-pkg6.0t64:ppc64el. 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70124 files and directories currently installed.) 274s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_ppc64el.deb ... 274s Unpacking libapt-pkg6.0t64:ppc64el (2.7.14) ... 274s Setting up libapt-pkg6.0t64:ppc64el (2.7.14) ... 274s Selecting previously unselected package libnettle8t64:ppc64el. 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70174 files and directories currently installed.) 274s Preparing to unpack .../libnettle8t64_3.9.1-2.2_ppc64el.deb ... 274s Unpacking libnettle8t64:ppc64el (3.9.1-2.2) ... 274s Setting up libnettle8t64:ppc64el (3.9.1-2.2) ... 274s dpkg: libhogweed6:ppc64el: dependency problems, but removing anyway as you requested: 274s librtmp1:ppc64el depends on libhogweed6. 274s libgnutls30:ppc64el depends on libhogweed6 (>= 3.6). 274s 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70182 files and directories currently installed.) 274s Removing libhogweed6:ppc64el (3.9.1-2) ... 274s Selecting previously unselected package libhogweed6t64:ppc64el. 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70177 files and directories currently installed.) 274s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_ppc64el.deb ... 274s Unpacking libhogweed6t64:ppc64el (3.9.1-2.2) ... 274s Setting up libhogweed6t64:ppc64el (3.9.1-2.2) ... 274s dpkg: libgnutls30:ppc64el: dependency problems, but removing anyway as you requested: 274s librtmp1:ppc64el depends on libgnutls30 (>= 3.7.2). 274s apt depends on libgnutls30 (>= 3.8.1). 274s 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70183 files and directories currently installed.) 274s Removing libgnutls30:ppc64el (3.8.3-1ubuntu1) ... 274s Selecting previously unselected package libgnutls30t64:ppc64el. 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70174 files and directories currently installed.) 274s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_ppc64el.deb ... 274s Unpacking libgnutls30t64:ppc64el (3.8.3-1.1ubuntu2) ... 274s Setting up libgnutls30t64:ppc64el (3.8.3-1.1ubuntu2) ... 274s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 274s Preparing to unpack .../apt_2.7.14_ppc64el.deb ... 274s Unpacking apt (2.7.14) over (2.7.12) ... 275s Setting up apt (2.7.14) ... 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 275s Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2build6_ppc64el.deb ... 275s Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build6) over (2.4+20151223.gitfa8646d.1-2build4) ... 275s Preparing to unpack .../liblzma5_5.6.0-0.2_ppc64el.deb ... 275s Unpacking liblzma5:ppc64el (5.6.0-0.2) over (5.4.5-0.3) ... 275s Setting up liblzma5:ppc64el (5.6.0-0.2) ... 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 275s Preparing to unpack .../libblkid1_2.39.3-9ubuntu2_ppc64el.deb ... 275s Unpacking libblkid1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 275s Setting up libblkid1:ppc64el (2.39.3-9ubuntu2) ... 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 275s Preparing to unpack .../kmod_31+20240202-2ubuntu4_ppc64el.deb ... 275s Unpacking kmod (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 275s Preparing to unpack .../libkmod2_31+20240202-2ubuntu4_ppc64el.deb ... 275s Unpacking libkmod2:ppc64el (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 275s Preparing to unpack .../libselinux1_3.5-2ubuntu1_ppc64el.deb ... 275s Unpacking libselinux1:ppc64el (3.5-2ubuntu1) over (3.5-2build1) ... 275s Setting up libselinux1:ppc64el (3.5-2ubuntu1) ... 275s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 275s Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1_all.deb ... 275s Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.1.2-2) ... 275s Setting up libaudit-common (1:3.1.2-2.1) ... 276s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 276s Preparing to unpack .../libcap-ng0_0.8.4-2build1_ppc64el.deb ... 276s Unpacking libcap-ng0:ppc64el (0.8.4-2build1) over (0.8.4-2) ... 276s Setting up libcap-ng0:ppc64el (0.8.4-2build1) ... 276s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 276s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_ppc64el.deb ... 276s Unpacking libaudit1:ppc64el (1:3.1.2-2.1) over (1:3.1.2-2) ... 276s Setting up libaudit1:ppc64el (1:3.1.2-2.1) ... 276s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 276s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_ppc64el.deb ... 276s Unpacking libpam0g:ppc64el (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 276s Setting up libpam0g:ppc64el (1.5.3-5ubuntu3) ... 276s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 276s Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu3_ppc64el.deb ... 276s Unpacking libpam-modules-bin (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 276s Setting up libpam-modules-bin (1.5.3-5ubuntu3) ... 276s pam_namespace.service is a disabled or a static unit not running, not starting it. 276s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 276s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu3_ppc64el.deb ... 276s Unpacking libpam-modules:ppc64el (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 276s Setting up libpam-modules:ppc64el (1.5.3-5ubuntu3) ... 276s Installing new version of config file /etc/security/namespace.init ... 276s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 276s Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu3_all.deb ... 276s Unpacking libpam-runtime (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 276s Setting up libpam-runtime (1.5.3-5ubuntu3) ... 277s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 277s Preparing to unpack .../00-dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ... 277s Unpacking dbus-session-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 277s Preparing to unpack .../01-dbus-user-session_1.14.10-4ubuntu2_ppc64el.deb ... 277s Unpacking dbus-user-session (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 277s Preparing to unpack .../02-libapparmor1_4.0.0-beta3-0ubuntu2_ppc64el.deb ... 277s Unpacking libapparmor1:ppc64el (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 277s Preparing to unpack .../03-libexpat1_2.6.1-2_ppc64el.deb ... 277s Unpacking libexpat1:ppc64el (2.6.1-2) over (2.6.0-1) ... 277s Preparing to unpack .../04-dbus-system-bus-common_1.14.10-4ubuntu2_all.deb ... 277s Unpacking dbus-system-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 277s Preparing to unpack .../05-dbus-bin_1.14.10-4ubuntu2_ppc64el.deb ... 277s Unpacking dbus-bin (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 277s Preparing to unpack .../06-dbus_1.14.10-4ubuntu2_ppc64el.deb ... 277s Unpacking dbus (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 277s Preparing to unpack .../07-dbus-daemon_1.14.10-4ubuntu2_ppc64el.deb ... 277s Unpacking dbus-daemon (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 277s Preparing to unpack .../08-libdbus-1-3_1.14.10-4ubuntu2_ppc64el.deb ... 277s Unpacking libdbus-1-3:ppc64el (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 277s Preparing to unpack .../09-libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_ppc64el.deb ... 277s Unpacking libdevmapper1.02.1:ppc64el (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 277s Preparing to unpack .../10-libuuid1_2.39.3-9ubuntu2_ppc64el.deb ... 277s Unpacking libuuid1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 277s Setting up libuuid1:ppc64el (2.39.3-9ubuntu2) ... 277s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 277s Preparing to unpack .../libcryptsetup12_2%3a2.7.0-1ubuntu2_ppc64el.deb ... 277s Unpacking libcryptsetup12:ppc64el (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 277s Preparing to unpack .../libfdisk1_2.39.3-9ubuntu2_ppc64el.deb ... 277s Unpacking libfdisk1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 277s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu2_ppc64el.deb ... 277s Unpacking libseccomp2:ppc64el (2.5.5-1ubuntu2) over (2.5.5-1ubuntu1) ... 277s Setting up libseccomp2:ppc64el (2.5.5-1ubuntu2) ... 277s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 277s Preparing to unpack .../mount_2.39.3-9ubuntu2_ppc64el.deb ... 277s Unpacking mount (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 277s Preparing to unpack .../libmount1_2.39.3-9ubuntu2_ppc64el.deb ... 277s Unpacking libmount1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 277s Setting up libmount1:ppc64el (2.39.3-9ubuntu2) ... 277s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 277s Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu1_ppc64el.deb ... 277s Unpacking zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 277s Setting up zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu1) ... 277s Setting up libpython3.12-minimal:ppc64el (3.12.2-4build3) ... 277s Setting up libexpat1:ppc64el (2.6.1-2) ... 277s Setting up python3.12-minimal (3.12.2-4build3) ... 278s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 278s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_ppc64el.deb ... 278s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 278s Setting up python3-minimal (3.12.2-0ubuntu1) ... 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 279s Preparing to unpack .../python3_3.12.2-0ubuntu1_ppc64el.deb ... 279s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 279s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_ppc64el.deb ... 279s Unpacking libplymouth5:ppc64el (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 279s dpkg: libpng16-16:ppc64el: dependency problems, but removing anyway as you requested: 279s libfreetype6:ppc64el depends on libpng16-16 (>= 1.6.2-1). 279s 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 279s Removing libpng16-16:ppc64el (1.6.43-1) ... 279s Selecting previously unselected package libpng16-16t64:ppc64el. 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70190 files and directories currently installed.) 279s Preparing to unpack .../0-libpng16-16t64_1.6.43-3_ppc64el.deb ... 279s Unpacking libpng16-16t64:ppc64el (1.6.43-3) ... 279s Preparing to unpack .../1-libbrotli1_1.1.0-2build1_ppc64el.deb ... 279s Unpacking libbrotli1:ppc64el (1.1.0-2build1) over (1.1.0-2) ... 279s Preparing to unpack .../2-libfreetype6_2.13.2+dfsg-1build2_ppc64el.deb ... 279s Unpacking libfreetype6:ppc64el (2.13.2+dfsg-1build2) over (2.13.2+dfsg-1) ... 279s Preparing to unpack .../3-libsqlite3-0_3.45.1-1ubuntu1_ppc64el.deb ... 279s Unpacking libsqlite3-0:ppc64el (3.45.1-1ubuntu1) over (3.45.1-1) ... 279s Preparing to unpack .../4-pinentry-curses_1.2.1-3ubuntu4_ppc64el.deb ... 279s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ... 279s Preparing to unpack .../5-gcc-14-base_14-20240315-1ubuntu1_ppc64el.deb ... 279s Unpacking gcc-14-base:ppc64el (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 279s Setting up gcc-14-base:ppc64el (14-20240315-1ubuntu1) ... 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 279s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_ppc64el.deb ... 279s Unpacking libgcc-s1:ppc64el (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 279s Setting up libgcc-s1:ppc64el (14-20240315-1ubuntu1) ... 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 279s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_ppc64el.deb ... 279s Unpacking libstdc++6:ppc64el (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 279s Setting up libstdc++6:ppc64el (14-20240315-1ubuntu1) ... 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 279s Preparing to unpack .../python-apt-common_2.7.7_all.deb ... 279s Unpacking python-apt-common (2.7.7) over (2.7.6) ... 279s Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu2_ppc64el.deb ... 279s Unpacking libsmartcols1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 279s Setting up libsmartcols1:ppc64el (2.39.3-9ubuntu2) ... 279s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 279s Preparing to unpack .../00-readline-common_8.2-4_all.deb ... 279s Unpacking readline-common (8.2-4) over (8.2-3) ... 279s Preparing to unpack .../01-bsdextrautils_2.39.3-9ubuntu2_ppc64el.deb ... 279s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 279s Preparing to unpack .../02-groff-base_1.23.0-3build1_ppc64el.deb ... 279s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ... 279s Preparing to unpack .../03-libpython3-stdlib_3.12.2-0ubuntu1_ppc64el.deb ... 279s Unpacking libpython3-stdlib:ppc64el (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 279s Preparing to unpack .../04-libfido2-1_1.14.0-1build1_ppc64el.deb ... 279s Unpacking libfido2-1:ppc64el (1.14.0-1build1) over (1.14.0-1) ... 279s Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-6ubuntu1_ppc64el.deb ... 279s Unpacking libgssapi-krb5-2:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 279s Preparing to unpack .../06-libkrb5-3_1.20.1-6ubuntu1_ppc64el.deb ... 279s Unpacking libkrb5-3:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 279s Preparing to unpack .../07-libkrb5support0_1.20.1-6ubuntu1_ppc64el.deb ... 279s Unpacking libkrb5support0:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 279s Preparing to unpack .../08-libk5crypto3_1.20.1-6ubuntu1_ppc64el.deb ... 279s Unpacking libk5crypto3:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 279s Preparing to unpack .../09-libcom-err2_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 279s Unpacking libcom-err2:ppc64el (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 279s Preparing to unpack .../10-libproc2-0_2%3a4.0.4-4ubuntu2_ppc64el.deb ... 279s Unpacking libproc2-0:ppc64el (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 279s Preparing to unpack .../11-procps_2%3a4.0.4-4ubuntu2_ppc64el.deb ... 279s Unpacking procps (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 279s Preparing to unpack .../12-libnghttp2-14_1.59.0-1build1_ppc64el.deb ... 279s Unpacking libnghttp2-14:ppc64el (1.59.0-1build1) over (1.59.0-1) ... 279s Preparing to unpack .../13-dpkg_1.22.6ubuntu5_ppc64el.deb ... 279s Unpacking dpkg (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 280s Setting up dpkg (1.22.6ubuntu5) ... 280s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 280s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_ppc64el.deb ... 280s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 280s Setting up util-linux (2.39.3-9ubuntu2) ... 281s fstrim.service is a disabled or a static unit not running, not starting it. 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 281s Preparing to unpack .../libxml2_2.9.14+dfsg-1.3ubuntu2_ppc64el.deb ... 281s Unpacking libxml2:ppc64el (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ... 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 281s Removing libatm1:ppc64el (1:2.5.1-5) ... 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70197 files and directories currently installed.) 281s Preparing to unpack .../libbpf1_1%3a1.3.0-2build1_ppc64el.deb ... 281s Unpacking libbpf1:ppc64el (1:1.3.0-2build1) over (1:1.3.0-2) ... 281s Preparing to unpack .../iproute2_6.1.0-1ubuntu5_ppc64el.deb ... 281s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ... 281s dpkg: libelf1:ppc64el: dependency problems, but removing anyway as you requested: 281s linux-headers-6.8.0-11-generic depends on libelf1 (>= 0.144). 281s 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70197 files and directories currently installed.) 281s Removing libelf1:ppc64el (0.190-1) ... 281s Selecting previously unselected package libelf1t64:ppc64el. 281s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70192 files and directories currently installed.) 281s Preparing to unpack .../libelf1t64_0.190-1.1build2_ppc64el.deb ... 281s Unpacking libelf1t64:ppc64el (0.190-1.1build2) ... 281s Preparing to unpack .../dhcpcd-base_1%3a10.0.6-1ubuntu2_ppc64el.deb ... 281s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ... 282s Preparing to unpack .../file_1%3a5.45-3_ppc64el.deb ... 282s Unpacking file (1:5.45-3) over (1:5.45-2) ... 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70197 files and directories currently installed.) 282s Removing libmagic1:ppc64el (1:5.45-2) ... 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70187 files and directories currently installed.) 282s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_ppc64el.deb ... 282s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 282s Selecting previously unselected package libmagic1t64:ppc64el. 282s Preparing to unpack .../libmagic1t64_1%3a5.45-3_ppc64el.deb ... 282s Unpacking libmagic1t64:ppc64el (1:5.45-3) ... 282s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 282s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 282s Preparing to unpack .../lsof_4.95.0-1build2_ppc64el.deb ... 282s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ... 282s Preparing to unpack .../libnsl2_1.3.0-3build2_ppc64el.deb ... 282s Unpacking libnsl2:ppc64el (1.3.0-3build2) over (1.3.0-3) ... 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70198 files and directories currently installed.) 282s Removing libtirpc3:ppc64el (1.3.4+ds-1build1) ... 282s Selecting previously unselected package libtirpc3t64:ppc64el. 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70192 files and directories currently installed.) 282s Preparing to unpack .../libtirpc3t64_1.3.4+ds-1.1_ppc64el.deb ... 282s Adding 'diversion of /lib/powerpc64le-linux-gnu/libtirpc.so.3 to /lib/powerpc64le-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 282s Adding 'diversion of /lib/powerpc64le-linux-gnu/libtirpc.so.3.0.0 to /lib/powerpc64le-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 282s Unpacking libtirpc3t64:ppc64el (1.3.4+ds-1.1) ... 282s Preparing to unpack .../multipath-tools_0.9.4-5ubuntu6_ppc64el.deb ... 282s Unpacking multipath-tools (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ... 282s dpkg: liburcu8:ppc64el: dependency problems, but removing anyway as you requested: 282s xfsprogs depends on liburcu8 (>= 0.13.0). 282s 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 282s Removing liburcu8:ppc64el (0.14.0-3) ... 282s Selecting previously unselected package liburcu8t64:ppc64el. 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70183 files and directories currently installed.) 282s Preparing to unpack .../liburcu8t64_0.14.0-3.1_ppc64el.deb ... 282s Unpacking liburcu8t64:ppc64el (0.14.0-3.1) ... 282s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_ppc64el.deb ... 282s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 282s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_ppc64el.deb ... 282s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 282s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_ppc64el.deb ... 282s Unpacking bind9-libs:ppc64el (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70203 files and directories currently installed.) 282s Removing libuv1:ppc64el (1.48.0-1) ... 282s Selecting previously unselected package libuv1t64:ppc64el. 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70198 files and directories currently installed.) 282s Preparing to unpack .../libuv1t64_1.48.0-1.1_ppc64el.deb ... 282s Unpacking libuv1t64:ppc64el (1.48.0-1.1) ... 282s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu4_ppc64el.deb ... 282s Unpacking liblocale-gettext-perl (1.07-6ubuntu4) over (1.07-6build1) ... 282s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_ppc64el.deb ... 282s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 282s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_ppc64el.deb ... 282s Unpacking libdebconfclient0:ppc64el (0.271ubuntu2) over (0.271ubuntu1) ... 282s Setting up libdebconfclient0:ppc64el (0.271ubuntu2) ... 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 282s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ... 282s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ... 282s Setting up libsemanage-common (3.5-1build4) ... 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 282s Preparing to unpack .../libsemanage2_3.5-1build4_ppc64el.deb ... 282s Unpacking libsemanage2:ppc64el (3.5-1build4) over (3.5-1build2) ... 282s Setting up libsemanage2:ppc64el (3.5-1build4) ... 282s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 282s Preparing to unpack .../install-info_7.1-3build1_ppc64el.deb ... 282s Unpacking install-info (7.1-3build1) over (7.1-3) ... 282s Setting up install-info (7.1-3build1) ... 283s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 283s Preparing to unpack .../000-gcc-13-base_13.2.0-21ubuntu1_ppc64el.deb ... 283s Unpacking gcc-13-base:ppc64el (13.2.0-21ubuntu1) over (13.2.0-17ubuntu2) ... 283s Preparing to unpack .../001-libss2_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 283s Unpacking libss2:ppc64el (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 283s Preparing to unpack .../002-dmsetup_2%3a1.02.185-3ubuntu2_ppc64el.deb ... 283s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 283s Preparing to unpack .../003-eject_2.39.3-9ubuntu2_ppc64el.deb ... 283s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 283s Preparing to unpack .../004-krb5-locales_1.20.1-6ubuntu1_all.deb ... 283s Unpacking krb5-locales (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 283s Preparing to unpack .../005-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 283s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 283s Preparing to unpack .../006-libslang2_2.3.3-3build1_ppc64el.deb ... 283s Unpacking libslang2:ppc64el (2.3.3-3build1) over (2.3.3-3) ... 283s Preparing to unpack .../007-libtext-charwidth-perl_0.04-11build2_ppc64el.deb ... 283s Unpacking libtext-charwidth-perl:ppc64el (0.04-11build2) over (0.04-11build1) ... 283s Preparing to unpack .../008-libtext-iconv-perl_1.7-8build2_ppc64el.deb ... 283s Unpacking libtext-iconv-perl:ppc64el (1.7-8build2) over (1.7-8build1) ... 283s Preparing to unpack .../009-python3-yaml_6.0.1-2build1_ppc64el.deb ... 283s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ... 283s Preparing to unpack .../010-python3-setuptools_68.1.2-2ubuntu1_all.deb ... 283s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ... 283s Preparing to unpack .../011-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ... 283s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ... 283s Preparing to unpack .../012-rsyslog_8.2312.0-3ubuntu7_ppc64el.deb ... 283s Unpacking rsyslog (8.2312.0-3ubuntu7) over (8.2312.0-3ubuntu3) ... 283s Preparing to unpack .../013-vim-tiny_2%3a9.1.0016-1ubuntu6_ppc64el.deb ... 283s Unpacking vim-tiny (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 283s Preparing to unpack .../014-vim-common_2%3a9.1.0016-1ubuntu6_all.deb ... 283s Unpacking vim-common (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 283s Selecting previously unselected package xdg-user-dirs. 283s Preparing to unpack .../015-xdg-user-dirs_0.18-1_ppc64el.deb ... 283s Unpacking xdg-user-dirs (0.18-1) ... 283s Preparing to unpack .../016-xxd_2%3a9.1.0016-1ubuntu6_ppc64el.deb ... 283s Unpacking xxd (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 283s Preparing to unpack .../017-apparmor_4.0.0-beta3-0ubuntu2_ppc64el.deb ... 284s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 284s Preparing to unpack .../018-ftp_20230507-2build1_all.deb ... 284s Unpacking ftp (20230507-2build1) over (20230507-2) ... 284s Preparing to unpack .../019-inetutils-telnet_2%3a2.5-3ubuntu3_ppc64el.deb ... 284s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ... 284s Preparing to unpack .../020-info_7.1-3build1_ppc64el.deb ... 284s Unpacking info (7.1-3build1) over (7.1-3) ... 284s Preparing to unpack .../021-libusb-1.0-0_2%3a1.0.27-1_ppc64el.deb ... 284s Unpacking libusb-1.0-0:ppc64el (2:1.0.27-1) over (2:1.0.26-1) ... 284s Preparing to unpack .../022-libxmuu1_2%3a1.1.3-3build1_ppc64el.deb ... 284s Unpacking libxmuu1:ppc64el (2:1.1.3-3build1) over (2:1.1.3-3) ... 284s Preparing to unpack .../023-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_ppc64el.deb ... 284s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ... 284s Selecting previously unselected package manpages. 284s Preparing to unpack .../024-manpages_6.05.01-1_all.deb ... 284s Unpacking manpages (6.05.01-1) ... 284s Preparing to unpack .../025-mtr-tiny_0.95-1.1build1_ppc64el.deb ... 284s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ... 284s Preparing to unpack .../026-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_ppc64el.deb ... 284s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 284s Preparing to unpack .../027-plymouth_24.004.60-1ubuntu6_ppc64el.deb ... 284s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 284s Preparing to unpack .../028-telnet_0.17+2.5-3ubuntu3_all.deb ... 284s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ... 284s Preparing to unpack .../029-usb.ids_2024.03.18-1_all.deb ... 284s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ... 284s Preparing to unpack .../030-xz-utils_5.6.0-0.2_ppc64el.deb ... 284s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ... 284s Preparing to unpack .../031-libctf0_2.42-4ubuntu1_ppc64el.deb ... 284s Unpacking libctf0:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 284s Preparing to unpack .../032-libctf-nobfd0_2.42-4ubuntu1_ppc64el.deb ... 284s Unpacking libctf-nobfd0:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 284s Preparing to unpack .../033-binutils-powerpc64le-linux-gnu_2.42-4ubuntu1_ppc64el.deb ... 284s Unpacking binutils-powerpc64le-linux-gnu (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 284s Preparing to unpack .../034-libbinutils_2.42-4ubuntu1_ppc64el.deb ... 284s Unpacking libbinutils:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 284s Preparing to unpack .../035-binutils_2.42-4ubuntu1_ppc64el.deb ... 284s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 285s Preparing to unpack .../036-binutils-common_2.42-4ubuntu1_ppc64el.deb ... 285s Unpacking binutils-common:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 285s Preparing to unpack .../037-libsframe1_2.42-4ubuntu1_ppc64el.deb ... 285s Unpacking libsframe1:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 285s Selecting previously unselected package libllvm18:ppc64el. 285s Preparing to unpack .../038-libllvm18_1%3a18.1.2-1ubuntu2_ppc64el.deb ... 285s Unpacking libllvm18:ppc64el (1:18.1.2-1ubuntu2) ... 285s Selecting previously unselected package libclang-cpp18. 285s Preparing to unpack .../039-libclang-cpp18_1%3a18.1.2-1ubuntu2_ppc64el.deb ... 285s Unpacking libclang-cpp18 (1:18.1.2-1ubuntu2) ... 286s Selecting previously unselected package libbpfcc:ppc64el. 286s Preparing to unpack .../040-libbpfcc_0.29.1+ds-1ubuntu4_ppc64el.deb ... 286s Unpacking libbpfcc:ppc64el (0.29.1+ds-1ubuntu4) ... 286s Selecting previously unselected package python3-bpfcc. 286s Preparing to unpack .../041-python3-bpfcc_0.29.1+ds-1ubuntu4_all.deb ... 286s Unpacking python3-bpfcc (0.29.1+ds-1ubuntu4) ... 286s Selecting previously unselected package ieee-data. 286s Preparing to unpack .../042-ieee-data_20220827.1_all.deb ... 286s Unpacking ieee-data (20220827.1) ... 286s Selecting previously unselected package python3-netaddr. 286s Preparing to unpack .../043-python3-netaddr_0.8.0-2ubuntu1_all.deb ... 286s Unpacking python3-netaddr (0.8.0-2ubuntu1) ... 286s Selecting previously unselected package bpfcc-tools. 286s Preparing to unpack .../044-bpfcc-tools_0.29.1+ds-1ubuntu4_all.deb ... 286s Unpacking bpfcc-tools (0.29.1+ds-1ubuntu4) ... 286s Selecting previously unselected package libclang1-18. 286s Preparing to unpack .../045-libclang1-18_1%3a18.1.2-1ubuntu2_ppc64el.deb ... 286s Unpacking libclang1-18 (1:18.1.2-1ubuntu2) ... 286s Selecting previously unselected package libdw1t64:ppc64el. 286s Preparing to unpack .../046-libdw1t64_0.190-1.1build2_ppc64el.deb ... 286s Unpacking libdw1t64:ppc64el (0.190-1.1build2) ... 286s Selecting previously unselected package bpftrace. 286s Preparing to unpack .../047-bpftrace_0.20.2-1ubuntu1_ppc64el.deb ... 286s Unpacking bpftrace (0.20.2-1ubuntu1) ... 287s Preparing to unpack .../048-cryptsetup-bin_2%3a2.7.0-1ubuntu2_ppc64el.deb ... 287s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 287s Preparing to unpack .../049-dpkg-dev_1.22.6ubuntu5_all.deb ... 287s Unpacking dpkg-dev (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 287s Preparing to unpack .../050-libdpkg-perl_1.22.6ubuntu5_all.deb ... 287s Unpacking libdpkg-perl (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 287s Selecting previously unselected package fonts-dejavu-mono. 287s Preparing to unpack .../051-fonts-dejavu-mono_2.37-8_all.deb ... 287s Unpacking fonts-dejavu-mono (2.37-8) ... 287s Selecting previously unselected package fonts-dejavu-core. 287s Preparing to unpack .../052-fonts-dejavu-core_2.37-8_all.deb ... 287s Unpacking fonts-dejavu-core (2.37-8) ... 287s Selecting previously unselected package fontconfig-config. 287s Preparing to unpack .../053-fontconfig-config_2.15.0-1.1ubuntu1_ppc64el.deb ... 287s Unpacking fontconfig-config (2.15.0-1.1ubuntu1) ... 287s Preparing to unpack .../054-libprotobuf-c1_1.4.1-1ubuntu3_ppc64el.deb ... 287s Unpacking libprotobuf-c1:ppc64el (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ... 287s Preparing to unpack .../055-gnupg-l10n_2.4.4-2ubuntu15_all.deb ... 287s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 287s Preparing to unpack .../056-libibverbs1_50.0-2build1_ppc64el.deb ... 287s Unpacking libibverbs1:ppc64el (50.0-2build1) over (50.0-2) ... 287s Preparing to unpack .../057-ibverbs-providers_50.0-2build1_ppc64el.deb ... 287s Unpacking ibverbs-providers:ppc64el (50.0-2build1) over (50.0-2) ... 287s Preparing to unpack .../058-jq_1.7.1-3_ppc64el.deb ... 287s Unpacking jq (1.7.1-3) over (1.7.1-2) ... 287s Preparing to unpack .../059-libjq1_1.7.1-3_ppc64el.deb ... 287s Unpacking libjq1:ppc64el (1.7.1-3) over (1.7.1-2) ... 287s Selecting previously unselected package libaio1t64:ppc64el. 287s Preparing to unpack .../060-libaio1t64_0.3.113-6_ppc64el.deb ... 287s Unpacking libaio1t64:ppc64el (0.3.113-6) ... 287s Selecting previously unselected package libatm1t64:ppc64el. 287s Preparing to unpack .../061-libatm1t64_1%3a2.5.1-5.1_ppc64el.deb ... 287s Unpacking libatm1t64:ppc64el (1:2.5.1-5.1) ... 287s Selecting previously unselected package libc-dev-bin. 287s Preparing to unpack .../062-libc-dev-bin_2.39-0ubuntu6_ppc64el.deb ... 287s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 287s Selecting previously unselected package libfontconfig1:ppc64el. 287s Preparing to unpack .../063-libfontconfig1_2.15.0-1.1ubuntu1_ppc64el.deb ... 287s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu1) ... 287s Selecting previously unselected package libjpeg-turbo8:ppc64el. 287s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 287s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 287s Selecting previously unselected package libjpeg8:ppc64el. 287s Preparing to unpack .../065-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 287s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 287s Selecting previously unselected package libdeflate0:ppc64el. 287s Preparing to unpack .../066-libdeflate0_1.19-1_ppc64el.deb ... 287s Unpacking libdeflate0:ppc64el (1.19-1) ... 287s Selecting previously unselected package libjbig0:ppc64el. 287s Preparing to unpack .../067-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 287s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 287s Selecting previously unselected package liblerc4:ppc64el. 287s Preparing to unpack .../068-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 287s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 287s Selecting previously unselected package libsharpyuv0:ppc64el. 287s Preparing to unpack .../069-libsharpyuv0_1.3.2-0.4build2_ppc64el.deb ... 287s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4build2) ... 287s Selecting previously unselected package libwebp7:ppc64el. 287s Preparing to unpack .../070-libwebp7_1.3.2-0.4build2_ppc64el.deb ... 287s Unpacking libwebp7:ppc64el (1.3.2-0.4build2) ... 287s Selecting previously unselected package libtiff6:ppc64el. 287s Preparing to unpack .../071-libtiff6_4.5.1+git230720-4ubuntu1_ppc64el.deb ... 287s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu1) ... 287s Selecting previously unselected package libxpm4:ppc64el. 287s Preparing to unpack .../072-libxpm4_1%3a3.5.17-1build1_ppc64el.deb ... 287s Unpacking libxpm4:ppc64el (1:3.5.17-1build1) ... 287s Selecting previously unselected package libgd3:ppc64el. 287s Preparing to unpack .../073-libgd3_2.3.3-9ubuntu3_ppc64el.deb ... 287s Unpacking libgd3:ppc64el (2.3.3-9ubuntu3) ... 287s Selecting previously unselected package libc-devtools. 287s Preparing to unpack .../074-libc-devtools_2.39-0ubuntu6_ppc64el.deb ... 287s Unpacking libc-devtools (2.39-0ubuntu6) ... 287s Selecting previously unselected package linux-libc-dev:ppc64el. 287s Preparing to unpack .../075-linux-libc-dev_6.8.0-20.20_ppc64el.deb ... 287s Unpacking linux-libc-dev:ppc64el (6.8.0-20.20) ... 287s Selecting previously unselected package libcrypt-dev:ppc64el. 287s Preparing to unpack .../076-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ... 287s Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) ... 288s Selecting previously unselected package rpcsvc-proto. 288s Preparing to unpack .../077-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ... 288s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 288s Selecting previously unselected package libc6-dev:ppc64el. 288s Preparing to unpack .../078-libc6-dev_2.39-0ubuntu6_ppc64el.deb ... 288s Unpacking libc6-dev:ppc64el (2.39-0ubuntu6) ... 288s Preparing to unpack .../079-libevent-core-2.1-7_2.1.12-stable-9build1_ppc64el.deb ... 288s Unpacking libevent-core-2.1-7:ppc64el (2.1.12-stable-9build1) over (2.1.12-stable-9) ... 288s Preparing to unpack .../080-libftdi1-2_1.5-6build4_ppc64el.deb ... 288s Unpacking libftdi1-2:ppc64el (1.5-6build4) over (1.5-6build3) ... 288s Preparing to unpack .../081-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ... 288s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 288s Selecting previously unselected package libunwind8:ppc64el. 288s Preparing to unpack .../082-libunwind8_1.6.2-3_ppc64el.deb ... 288s Unpacking libunwind8:ppc64el (1.6.2-3) ... 288s Selecting previously unselected package linux-modules-6.8.0-20-generic. 288s Preparing to unpack .../083-linux-modules-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 288s Unpacking linux-modules-6.8.0-20-generic (6.8.0-20.20) ... 288s Selecting previously unselected package linux-image-6.8.0-20-generic. 288s Preparing to unpack .../084-linux-image-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 288s Unpacking linux-image-6.8.0-20-generic (6.8.0-20.20) ... 288s Selecting previously unselected package linux-modules-extra-6.8.0-20-generic. 288s Preparing to unpack .../085-linux-modules-extra-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 288s Unpacking linux-modules-extra-6.8.0-20-generic (6.8.0-20.20) ... 290s Preparing to unpack .../086-linux-generic_6.8.0-20.20+1_ppc64el.deb ... 290s Unpacking linux-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 290s Preparing to unpack .../087-linux-image-generic_6.8.0-20.20+1_ppc64el.deb ... 290s Unpacking linux-image-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 290s Preparing to unpack .../088-linux-virtual_6.8.0-20.20+1_ppc64el.deb ... 290s Unpacking linux-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 290s Preparing to unpack .../089-linux-image-virtual_6.8.0-20.20+1_ppc64el.deb ... 290s Unpacking linux-image-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 290s Preparing to unpack .../090-linux-headers-virtual_6.8.0-20.20+1_ppc64el.deb ... 290s Unpacking linux-headers-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 290s Selecting previously unselected package linux-headers-6.8.0-20. 290s Preparing to unpack .../091-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ... 290s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ... 293s Selecting previously unselected package linux-headers-6.8.0-20-generic. 293s Preparing to unpack .../092-linux-headers-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 293s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 294s Preparing to unpack .../093-linux-headers-generic_6.8.0-20.20+1_ppc64el.deb ... 294s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 294s Selecting previously unselected package linux-tools-common. 294s Preparing to unpack .../094-linux-tools-common_6.8.0-20.20_all.deb ... 294s Unpacking linux-tools-common (6.8.0-20.20) ... 294s Selecting previously unselected package linux-tools-6.8.0-20. 294s Preparing to unpack .../095-linux-tools-6.8.0-20_6.8.0-20.20_ppc64el.deb ... 294s Unpacking linux-tools-6.8.0-20 (6.8.0-20.20) ... 294s Selecting previously unselected package linux-tools-6.8.0-20-generic. 294s Preparing to unpack .../096-linux-tools-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 294s Unpacking linux-tools-6.8.0-20-generic (6.8.0-20.20) ... 294s Selecting previously unselected package manpages-dev. 294s Preparing to unpack .../097-manpages-dev_6.05.01-1_all.deb ... 294s Unpacking manpages-dev (6.05.01-1) ... 294s Preparing to unpack .../098-python3-distutils_3.12.2-3ubuntu1.1_all.deb ... 294s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 294s Preparing to unpack .../099-python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ... 294s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 294s Preparing to unpack .../100-python3-pyrsistent_0.20.0-1build1_ppc64el.deb ... 295s Unpacking python3-pyrsistent:ppc64el (0.20.0-1build1) over (0.20.0-1) ... 295s Preparing to unpack .../101-python3-typing-extensions_4.10.0-1_all.deb ... 295s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ... 295s Selecting previously unselected package ubuntu-kernel-accessories. 295s Preparing to unpack .../102-ubuntu-kernel-accessories_1.536build1_ppc64el.deb ... 295s Unpacking ubuntu-kernel-accessories (1.536build1) ... 295s Preparing to unpack .../103-kpartx_0.9.4-5ubuntu6_ppc64el.deb ... 295s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ... 295s Setting up pinentry-curses (1.2.1-3ubuntu4) ... 295s Setting up motd-news-config (13ubuntu8) ... 295s Setting up libtext-iconv-perl:ppc64el (1.7-8build2) ... 295s Setting up libtext-charwidth-perl:ppc64el (0.04-11build2) ... 295s Setting up libsharpyuv0:ppc64el (1.3.2-0.4build2) ... 295s Setting up liburcu8t64:ppc64el (0.14.0-3.1) ... 295s Setting up tcpdump (4.99.4-3ubuntu2) ... 295s Setting up libibverbs1:ppc64el (50.0-2build1) ... 295s Setting up systemd-sysv (255.4-1ubuntu5) ... 295s Setting up ubuntu-kernel-accessories (1.536build1) ... 295s Setting up libapparmor1:ppc64el (4.0.0-beta3-0ubuntu2) ... 295s Setting up libatm1t64:ppc64el (1:2.5.1-5.1) ... 295s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 295s Setting up libgdbm6t64:ppc64el (1.23-5.1) ... 295s Setting up bsdextrautils (2.39.3-9ubuntu2) ... 295s Setting up libxpm4:ppc64el (1:3.5.17-1build1) ... 295s Setting up libgdbm-compat4t64:ppc64el (1.23-5.1) ... 295s Setting up xdg-user-dirs (0.18-1) ... 295s Setting up ibverbs-providers:ppc64el (50.0-2build1) ... 295s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ... 295s Setting up libmagic-mgc (1:5.45-3) ... 295s Setting up gawk (1:5.2.1-2build2) ... 295s Setting up libjq1:ppc64el (1.7.1-3) ... 295s Setting up manpages (6.05.01-1) ... 295s Setting up libtirpc-common (1.3.4+ds-1.1) ... 295s Setting up libbrotli1:ppc64el (1.1.0-2build1) ... 295s Setting up libsqlite3-0:ppc64el (3.45.1-1ubuntu1) ... 295s Setting up libsasl2-modules:ppc64el (2.1.28+dfsg1-5ubuntu1) ... 295s Setting up libuv1t64:ppc64el (1.48.0-1.1) ... 295s Setting up libmagic1t64:ppc64el (1:5.45-3) ... 295s Setting up rsyslog (8.2312.0-3ubuntu7) ... 295s info: The user `syslog' is already a member of `adm'. 296s Setting up binutils-common:ppc64el (2.42-4ubuntu1) ... 296s Setting up libpsl5t64:ppc64el (0.21.2-1.1) ... 296s Setting up libnghttp2-14:ppc64el (1.59.0-1build1) ... 296s Setting up libdeflate0:ppc64el (1.19-1) ... 296s Setting up linux-libc-dev:ppc64el (6.8.0-20.20) ... 296s Setting up bc (1.07.1-3ubuntu2) ... 296s Setting up libctf-nobfd0:ppc64el (2.42-4ubuntu1) ... 296s Setting up libnss-systemd:ppc64el (255.4-1ubuntu5) ... 296s Setting up krb5-locales (1.20.1-6ubuntu1) ... 296s Setting up libcom-err2:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 296s Setting up file (1:5.45-3) ... 296s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ... 296s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ... 296s Setting up libunwind8:ppc64el (1.6.2-3) ... 296s Setting up libprotobuf-c1:ppc64el (1.4.1-1ubuntu3) ... 296s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ... 296s Setting up xxd (2:9.1.0016-1ubuntu6) ... 296s Setting up libsframe1:ppc64el (2.42-4ubuntu1) ... 296s Setting up libelf1t64:ppc64el (0.190-1.1build2) ... 296s Setting up libkrb5support0:ppc64el (1.20.1-6ubuntu1) ... 296s Setting up libdw1t64:ppc64el (0.190-1.1build2) ... 296s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 296s Setting up eject (2.39.3-9ubuntu2) ... 296s Setting up apparmor (4.0.0-beta3-0ubuntu2) ... 296s Installing new version of config file /etc/apparmor.d/abstractions/authentication ... 296s Installing new version of config file /etc/apparmor.d/abstractions/crypto ... 296s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ... 296s Installing new version of config file /etc/apparmor.d/abstractions/openssl ... 296s Installing new version of config file /etc/apparmor.d/code ... 296s Installing new version of config file /etc/apparmor.d/firefox ... 297s Reloading AppArmor profiles 298s Setting up libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 298s No schema files found: doing nothing. 298s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 298s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 298s Setting up vim-common (2:9.1.0016-1ubuntu6) ... 298s Setting up gcc-13-base:ppc64el (13.2.0-21ubuntu1) ... 298s Setting up libqrtr-glib0:ppc64el (1.2.2-1ubuntu3) ... 298s Setting up libslang2:ppc64el (2.3.3-3build1) ... 298s Setting up libnvme1t64 (1.8-3) ... 298s Setting up mtr-tiny (0.95-1.1build1) ... 298s Setting up gnupg-l10n (2.4.4-2ubuntu15) ... 298s Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build6) ... 298s Setting up libdbus-1-3:ppc64el (1.14.10-4ubuntu2) ... 298s Setting up xz-utils (5.6.0-0.2) ... 298s Setting up perl-modules-5.38 (5.38.2-3.2) ... 298s Setting up libproc2-0:ppc64el (2:4.0.4-4ubuntu2) ... 298s Setting up fonts-dejavu-mono (2.37-8) ... 298s Setting up libpng16-16t64:ppc64el (1.6.43-3) ... 298s Setting up systemd-timesyncd (255.4-1ubuntu5) ... 298s Setting up libevent-core-2.1-7:ppc64el (2.1.12-stable-9build1) ... 298s Setting up libss2:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 298s Setting up usb.ids (2024.03.18-1) ... 298s Setting up sudo (1.9.15p5-3ubuntu3) ... 298s Setting up fonts-dejavu-core (2.37-8) ... 298s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ... 298s Setting up gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) ... 298s Setting up libk5crypto3:ppc64el (1.20.1-6ubuntu1) ... 298s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 298s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ... 298s Setting up libwebp7:ppc64el (1.3.2-0.4build2) ... 298s Setting up libfdisk1:ppc64el (2.39.3-9ubuntu2) ... 298s Setting up libdb5.3t64:ppc64el (5.3.28+dfsg2-6) ... 298s Setting up libdevmapper1.02.1:ppc64el (2:1.02.185-3ubuntu2) ... 298s Setting up libaio1t64:ppc64el (0.3.113-6) ... 298s Setting up python-apt-common (2.7.7) ... 298s Setting up mount (2.39.3-9ubuntu2) ... 298s Setting up dmsetup (2:1.02.185-3ubuntu2) ... 298s Setting up uuid-runtime (2.39.3-9ubuntu2) ... 299s uuidd.service is a disabled or a static unit not running, not starting it. 299s Setting up libmm-glib0:ppc64el (1.23.4-0ubuntu1) ... 299s Setting up groff-base (1.23.0-3build1) ... 299s Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ... 299s Setting up libplymouth5:ppc64el (24.004.60-1ubuntu6) ... 299s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ... 299s Setting up jq (1.7.1-3) ... 299s Setting up procps (2:4.0.4-4ubuntu2) ... 300s Setting up gpgconf (2.4.4-2ubuntu15) ... 300s Setting up libcryptsetup12:ppc64el (2:2.7.0-1ubuntu2) ... 300s Setting up libgirepository-1.0-1:ppc64el (1.79.1-1ubuntu6) ... 300s Setting up libjson-glib-1.0-common (1.8.0-2build1) ... 300s Setting up libkrb5-3:ppc64el (1.20.1-6ubuntu1) ... 300s Setting up libpython3.11-minimal:ppc64el (3.11.8-1build4) ... 300s Setting up libusb-1.0-0:ppc64el (2:1.0.27-1) ... 300s Setting up libperl5.38t64:ppc64el (5.38.2-3.2) ... 300s Setting up tnftp (20230507-2build1) ... 300s Setting up libbinutils:ppc64el (2.42-4ubuntu1) ... 300s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ... 300s Setting up libfido2-1:ppc64el (1.14.0-1build1) ... 300s Setting up libc-dev-bin (2.39-0ubuntu6) ... 300s Setting up openssl (3.0.13-0ubuntu2) ... 300s Setting up linux-modules-6.8.0-20-generic (6.8.0-20.20) ... 302s Setting up linux-tools-common (6.8.0-20.20) ... 302s Setting up readline-common (8.2-4) ... 302s Setting up libxml2:ppc64el (2.9.14+dfsg-1.3ubuntu2) ... 302s Setting up libxmuu1:ppc64el (2:1.1.3-3build1) ... 302s Setting up dbus-bin (1.14.10-4ubuntu2) ... 303s Setting up info (7.1-3build1) ... 303s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ... 303s Setting up gpg (2.4.4-2ubuntu15) ... 303s Setting up libgudev-1.0-0:ppc64el (1:238-3ubuntu2) ... 303s Setting up libpolkit-gobject-1-0:ppc64el (124-1ubuntu1) ... 303s Setting up libbpf1:ppc64el (1:1.3.0-2build1) ... 303s Setting up libmbim-glib4:ppc64el (1.31.2-0ubuntu2) ... 303s Setting up rsync (3.2.7-1build1) ... 303s rsync.service is a disabled or a static unit not running, not starting it. 303s Setting up libudisks2-0:ppc64el (2.10.1-6) ... 303s Setting up libkmod2:ppc64el (31+20240202-2ubuntu4) ... 303s Setting up bolt (0.9.6-2build1) ... 304s bolt.service is a disabled or a static unit not running, not starting it. 304s Setting up libllvm18:ppc64el (1:18.1.2-1ubuntu2) ... 304s Setting up gnupg-utils (2.4.4-2ubuntu15) ... 304s Setting up initramfs-tools-bin (0.142ubuntu23) ... 304s Setting up libctf0:ppc64el (2.42-4ubuntu1) ... 304s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 304s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ... 304s Setting up python3.11-minimal (3.11.8-1build4) ... 305s Setting up libclang1-18 (1:18.1.2-1ubuntu2) ... 305s Setting up manpages-dev (6.05.01-1) ... 305s Setting up linux-modules-extra-6.8.0-20-generic (6.8.0-20.20) ... 307s Setting up apt-utils (2.7.14) ... 307s Setting up gpg-agent (2.4.4-2ubuntu15) ... 307s Setting up libpython3.12-stdlib:ppc64el (3.12.2-4build3) ... 307s Setting up wget (1.21.4-1ubuntu2) ... 307s Setting up fontconfig-config (2.15.0-1.1ubuntu1) ... 307s Setting up libxmlb2:ppc64el (0.3.15-1build1) ... 307s Setting up libpython3.11-stdlib:ppc64el (3.11.8-1build4) ... 307s Setting up python3.12 (3.12.2-4build3) ... 309s Setting up gpgsm (2.4.4-2ubuntu15) ... 309s Setting up inetutils-telnet (2:2.5-3ubuntu3) ... 309s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ... 309s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ... 309s update-initramfs: deferring update (trigger activated) 309s e2scrub_all.service is a disabled or a static unit not running, not starting it. 309s Setting up linux-tools-6.8.0-20 (6.8.0-20.20) ... 309s Setting up libparted2t64:ppc64el (3.6-3.1build2) ... 309s Setting up linux-headers-generic (6.8.0-20.20+1) ... 309s Setting up dbus-daemon (1.14.10-4ubuntu2) ... 309s Setting up libmbim-proxy (1.31.2-0ubuntu2) ... 309s Setting up vim-tiny (2:9.1.0016-1ubuntu6) ... 309s Setting up kmod (31+20240202-2ubuntu4) ... 310s Setting up libnetplan1:ppc64el (1.0-1) ... 310s Setting up man-db (2.12.0-3build4) ... 310s Updating database of manual pages ... 312s man-db.service is a disabled or a static unit not running, not starting it. 312s Setting up fdisk (2.39.3-9ubuntu2) ... 312s Setting up libjson-glib-1.0-0:ppc64el (1.8.0-2build1) ... 312s Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-5ubuntu1) ... 312s Setting up libftdi1-2:ppc64el (1.5-6build4) ... 312s Setting up perl (5.38.2-3.2) ... 312s Setting up libfreetype6:ppc64el (2.13.2+dfsg-1build2) ... 312s Setting up linux-tools-6.8.0-20-generic (6.8.0-20.20) ... 312s Setting up gir1.2-girepository-2.0:ppc64el (1.79.1-1ubuntu6) ... 312s Setting up dbus (1.14.10-4ubuntu2) ... 312s A reboot is required to replace the running dbus-daemon. 312s Please reboot the system when convenient. 313s Setting up shared-mime-info (2.4-1build1) ... 313s Setting up libblockdev-utils3:ppc64el (3.1.0-1build1) ... 313s Setting up libgssapi-krb5-2:ppc64el (1.20.1-6ubuntu1) ... 313s Setting up udev (255.4-1ubuntu5) ... 314s Setting up ftp (20230507-2build1) ... 314s Setting up keyboxd (2.4.4-2ubuntu15) ... 314s Setting up libdpkg-perl (1.22.6ubuntu5) ... 314s Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-5ubuntu1) ... 314s Setting up libssh-4:ppc64el (0.10.6-2build1) ... 314s Setting up libblockdev-nvme3:ppc64el (3.1.0-1build1) ... 314s Setting up libblockdev-fs3:ppc64el (3.1.0-1build1) ... 314s Setting up ieee-data (20220827.1) ... 314s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu1) ... 314s Setting up kpartx (0.9.4-5ubuntu6) ... 314s Setting up libpam-systemd:ppc64el (255.4-1ubuntu5) ... 314s Setting up libpolkit-agent-1-0:ppc64el (124-1ubuntu1) ... 314s Setting up libc6-dev:ppc64el (2.39-0ubuntu6) ... 314s Setting up libgpgme11t64:ppc64el (1.18.0-4.1ubuntu3) ... 314s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu1) ... 314s Setting up binutils-powerpc64le-linux-gnu (2.42-4ubuntu1) ... 314s Setting up netplan-generator (1.0-1) ... 314s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 314s Setting up initramfs-tools-core (0.142ubuntu23) ... 314s Setting up libclang-cpp18 (1:18.1.2-1ubuntu2) ... 314s Setting up libbpfcc:ppc64el (0.29.1+ds-1ubuntu4) ... 314s Setting up libarchive13t64:ppc64el (3.7.2-1.1ubuntu2) ... 314s Setting up libldap2:ppc64el (2.6.7+dfsg-1~exp1ubuntu6) ... 314s Setting up libpython3-stdlib:ppc64el (3.12.2-0ubuntu1) ... 314s Setting up systemd-resolved (255.4-1ubuntu5) ... 315s Setting up python3.11 (3.11.8-1build4) ... 316s Setting up telnet (0.17+2.5-3ubuntu3) ... 316s Setting up initramfs-tools (0.142ubuntu23) ... 316s update-initramfs: deferring update (trigger activated) 316s Setting up libblockdev-mdraid3:ppc64el (3.1.0-1build1) ... 316s Setting up linux-headers-virtual (6.8.0-20.20+1) ... 316s Setting up libcurl4t64:ppc64el (8.5.0-2ubuntu8) ... 316s Setting up bpftrace (0.20.2-1ubuntu1) ... 316s Setting up bind9-libs:ppc64el (1:9.18.24-0ubuntu3) ... 316s Setting up linux-image-6.8.0-20-generic (6.8.0-20.20) ... 319s I: /boot/vmlinux is now a symlink to vmlinux-6.8.0-20-generic 319s I: /boot/initrd.img is now a symlink to initrd.img-6.8.0-20-generic 319s Setting up libtirpc3t64:ppc64el (1.3.4+ds-1.1) ... 319s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ... 319s Setting up libblockdev-swap3:ppc64el (3.1.0-1build1) ... 319s Setting up plymouth (24.004.60-1ubuntu6) ... 319s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 319s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 325s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 326s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 326s Setting up iproute2 (6.1.0-1ubuntu5) ... 326s Setting up openssh-client (1:9.6p1-3ubuntu11) ... 326s Setting up libgusb2:ppc64el (0.4.8-1build1) ... 326s Setting up btrfs-progs (6.6.3-1.1build1) ... 326s Setting up libblockdev-loop3:ppc64el (3.1.0-1build1) ... 326s Setting up libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu8) ... 326s Setting up parted (3.6-3.1build2) ... 326s Setting up libqmi-glib5:ppc64el (1.35.2-0ubuntu1) ... 326s Setting up python3 (3.12.2-0ubuntu1) ... 326s Setting up binutils (2.42-4ubuntu1) ... 326s Setting up libblockdev3:ppc64el (3.1.0-1build1) ... 326s Setting up libjcat1:ppc64el (0.2.0-2build2) ... 326s Setting up multipath-tools (0.9.4-5ubuntu6) ... 327s Setting up dpkg-dev (1.22.6ubuntu5) ... 327s Setting up libblockdev-part3:ppc64el (3.1.0-1build1) ... 327s Setting up dirmngr (2.4.4-2ubuntu15) ... 327s Setting up dbus-user-session (1.14.10-4ubuntu2) ... 327s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ... 327s update-initramfs: deferring update (trigger activated) 327s Setting up python3-cryptography (41.0.7-4build2) ... 328s Setting up python3-gi (3.47.0-3build1) ... 328s Setting up libgd3:ppc64el (2.3.3-9ubuntu3) ... 328s Setting up python3-typing-extensions (4.10.0-1) ... 328s Setting up lsof (4.95.0-1build2) ... 328s Setting up python3-pyrsistent:ppc64el (0.20.0-1build1) ... 328s Setting up python3-netaddr (0.8.0-2ubuntu1) ... 328s Setting up libnsl2:ppc64el (1.3.0-3build2) ... 328s Setting up gnupg (2.4.4-2ubuntu15) ... 328s Setting up python3-netplan (1.0-1) ... 328s Setting up curl (8.5.0-2ubuntu8) ... 328s Setting up libvolume-key1:ppc64el (0.3.12-7build1) ... 328s Setting up linux-image-virtual (6.8.0-20.20+1) ... 328s Setting up bind9-host (1:9.18.24-0ubuntu3) ... 328s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ... 329s Setting up python3-bpfcc (0.29.1+ds-1ubuntu4) ... 329s Setting up libc-devtools (2.39-0ubuntu6) ... 329s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... 329s Setting up python3-distutils (3.12.2-3ubuntu1.1) ... 329s python3.12: can't get files for byte-compilation 329s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ... 329s Setting up linux-image-generic (6.8.0-20.20+1) ... 329s Setting up python3-dbus (1.3.2-5build2) ... 329s Setting up python3-setuptools (68.1.2-2ubuntu1) ... 330s Setting up gpg-wks-client (2.4.4-2ubuntu15) ... 330s Setting up openssh-server (1:9.6p1-3ubuntu11) ... 330s Replacing config file /etc/ssh/sshd_config with new version 332s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket. 333s Setting up linux-generic (6.8.0-20.20+1) ... 333s Setting up libblockdev-crypto3:ppc64el (3.1.0-1build1) ... 333s Setting up python3-gdbm:ppc64el (3.12.2-3ubuntu1.1) ... 333s Setting up python3-apt (2.7.7) ... 333s Setting up libfwupd2:ppc64el (1.9.15-2) ... 333s Setting up python3-yaml (6.0.1-2build1) ... 334s Setting up libqmi-proxy (1.35.2-0ubuntu1) ... 334s Setting up netplan.io (1.0-1) ... 334s Setting up linux-virtual (6.8.0-20.20+1) ... 334s Setting up grub-common (2.12-1ubuntu5) ... 334s Setting up bpfcc-tools (0.29.1+ds-1ubuntu4) ... 334s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ... 334s Setting up ubuntu-pro-client (31.2.2) ... 336s Setting up fwupd (1.9.15-2) ... 337s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 337s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 337s fwupd.service is a disabled or a static unit not running, not starting it. 337s Setting up ubuntu-pro-client-l10n (31.2.2) ... 337s Setting up udisks2 (2.10.1-6) ... 337s Setting up grub2-common (2.12-1ubuntu5) ... 337s Setting up grub-ieee1275-bin (2.12-1ubuntu5) ... 337s Setting up grub-ieee1275 (2.12-1ubuntu5) ... 338s Installing for powerpc-ieee1275 platform. 338s Installation finished. No error reported. 338s Sourcing file `/etc/default/grub' 338s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 338s Generating grub configuration file ... 338s Found linux image: /boot/vmlinux-6.8.0-20-generic 338s Found linux image: /boot/vmlinux-6.8.0-11-generic 338s Found initrd image: /boot/initrd.img-6.8.0-11-generic 338s Warning: os-prober will not be executed to detect other bootable partitions. 338s Systems on them will not be added to the GRUB boot configuration. 338s Check GRUB_DISABLE_OS_PROBER documentation entry. 338s Adding boot menu entry for UEFI Firmware Settings ... 338s done 338s Processing triggers for ufw (0.36.2-5) ... 338s Processing triggers for systemd (255.4-1ubuntu5) ... 338s Processing triggers for debianutils (5.17) ... 338s Processing triggers for install-info (7.1-3build1) ... 338s Processing triggers for libc-bin (2.39-0ubuntu6) ... 338s Processing triggers for initramfs-tools (0.142ubuntu23) ... 338s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 338s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 344s Processing triggers for linux-image-6.8.0-20-generic (6.8.0-20.20) ... 344s /etc/kernel/postinst.d/initramfs-tools: 344s update-initramfs: Generating /boot/initrd.img-6.8.0-20-generic 344s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 350s /etc/kernel/postinst.d/zz-update-grub: 350s Sourcing file `/etc/default/grub' 350s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 350s Generating grub configuration file ... 350s Found linux image: /boot/vmlinux-6.8.0-20-generic 350s Found initrd image: /boot/initrd.img-6.8.0-20-generic 350s Found linux image: /boot/vmlinux-6.8.0-11-generic 350s Found initrd image: /boot/initrd.img-6.8.0-11-generic 350s Warning: os-prober will not be executed to detect other bootable partitions. 350s Systems on them will not be added to the GRUB boot configuration. 350s Check GRUB_DISABLE_OS_PROBER documentation entry. 350s Adding boot menu entry for UEFI Firmware Settings ... 350s done 352s Reading package lists... 352s Building dependency tree... 352s Reading state information... 352s The following packages will be REMOVED: 352s libaio1* libnetplan0* python3-distutils* python3-lib2to3* 352s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 352s After this operation, 1613 kB disk space will be freed. 352s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 112169 files and directories currently installed.) 352s Removing libaio1:ppc64el (0.3.113-5) ... 352s Removing libnetplan0:ppc64el (0.107.1-3) ... 352s Removing python3-distutils (3.12.2-3ubuntu1.1) ... 352s Removing python3-lib2to3 (3.12.2-3ubuntu1.1) ... 352s Processing triggers for libc-bin (2.39-0ubuntu6) ... 353s autopkgtest [22:38:40]: rebooting testbed after setup commands that affected boot 526s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 547s autopkgtest [22:41:54]: testbed running kernel: Linux 6.8.0-20-generic #20-Ubuntu SMP Mon Mar 18 11:46:05 UTC 2024 550s autopkgtest [22:41:57]: @@@@@@@@@@@@@@@@@@@@ apt-source pdb2pqr 553s Get:1 http://ftpmaster.internal/ubuntu noble/universe pdb2pqr 3.6.1+dfsg-1 (dsc) [1860 B] 553s Get:2 http://ftpmaster.internal/ubuntu noble/universe pdb2pqr 3.6.1+dfsg-1 (tar) [7570 kB] 553s Get:3 http://ftpmaster.internal/ubuntu noble/universe pdb2pqr 3.6.1+dfsg-1 (diff) [9876 B] 553s gpgv: Signature made Mon Jun 12 17:36:50 2023 UTC 553s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 553s gpgv: Can't check signature: No public key 553s dpkg-source: warning: cannot verify inline signature for ./pdb2pqr_3.6.1+dfsg-1.dsc: no acceptable signature found 554s autopkgtest [22:42:01]: testing package pdb2pqr version 3.6.1+dfsg-1 554s autopkgtest [22:42:01]: build not needed 556s autopkgtest [22:42:03]: test installation-test: preparing testbed 558s Reading package lists... 559s Building dependency tree... 559s Reading state information... 559s Starting pkgProblemResolver with broken count: 0 559s Starting 2 pkgProblemResolver with broken count: 0 559s Done 559s The following additional packages will be installed: 559s docutils-common libblas3 libgfortran5 liblapack3 pdb2pqr python3-docutils 559s python3-numpy python3-pdb2pqr python3-pdbx python3-propka python3-roman 559s sgml-base xml-core 559s Suggested packages: 559s apbs docutils-doc fonts-linuxlibertine | ttf-linux-libertine 559s texlive-lang-french texlive-latex-base texlive-latex-recommended gcc 559s gfortran python3-dev python3-pytest python-pdbx-doc python-propka-doc 559s sgml-base-doc debhelper 559s Recommended packages: 559s libpaper-utils python3-pil 559s The following NEW packages will be installed: 559s autopkgtest-satdep docutils-common libblas3 libgfortran5 liblapack3 pdb2pqr 559s python3-docutils python3-numpy python3-pdb2pqr python3-pdbx python3-propka 559s python3-roman sgml-base xml-core 559s 0 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. 559s Need to get 8885 kB/8885 kB of archives. 559s After this operation, 39.6 MB of additional disk space will be used. 559s Get:1 /tmp/autopkgtest.mW8XOV/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [704 B] 559s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el sgml-base all 1.31 [11.4 kB] 559s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el xml-core all 0.19 [20.3 kB] 559s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el docutils-common all 0.20.1+dfsg-3 [132 kB] 560s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 560s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgfortran5 ppc64el 14-20240315-1ubuntu1 [574 kB] 560s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 560s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-numpy ppc64el 1:1.24.2-3ubuntu1 [4457 kB] 560s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-roman all 3.3-3 [9632 B] 560s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-docutils all 0.20.1+dfsg-3 [393 kB] 560s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pdbx all 2.0.1-2 [16.5 kB] 560s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-propka all 3.5.1-1 [85.5 kB] 560s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pdb2pqr all 3.6.1+dfsg-1 [145 kB] 560s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el pdb2pqr all 3.6.1+dfsg-1 [10.4 kB] 561s Fetched 8885 kB in 1s (7351 kB/s) 561s Selecting previously unselected package sgml-base. 561s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 111945 files and directories currently installed.) 561s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 561s Unpacking sgml-base (1.31) ... 561s Selecting previously unselected package xml-core. 561s Preparing to unpack .../01-xml-core_0.19_all.deb ... 561s Unpacking xml-core (0.19) ... 561s Selecting previously unselected package docutils-common. 561s Preparing to unpack .../02-docutils-common_0.20.1+dfsg-3_all.deb ... 561s Unpacking docutils-common (0.20.1+dfsg-3) ... 561s Selecting previously unselected package libblas3:ppc64el. 561s Preparing to unpack .../03-libblas3_3.12.0-3_ppc64el.deb ... 561s Unpacking libblas3:ppc64el (3.12.0-3) ... 561s Selecting previously unselected package libgfortran5:ppc64el. 561s Preparing to unpack .../04-libgfortran5_14-20240315-1ubuntu1_ppc64el.deb ... 561s Unpacking libgfortran5:ppc64el (14-20240315-1ubuntu1) ... 561s Selecting previously unselected package liblapack3:ppc64el. 561s Preparing to unpack .../05-liblapack3_3.12.0-3_ppc64el.deb ... 561s Unpacking liblapack3:ppc64el (3.12.0-3) ... 561s Selecting previously unselected package python3-numpy. 561s Preparing to unpack .../06-python3-numpy_1%3a1.24.2-3ubuntu1_ppc64el.deb ... 561s Unpacking python3-numpy (1:1.24.2-3ubuntu1) ... 561s Selecting previously unselected package python3-roman. 561s Preparing to unpack .../07-python3-roman_3.3-3_all.deb ... 561s Unpacking python3-roman (3.3-3) ... 561s Selecting previously unselected package python3-docutils. 561s Preparing to unpack .../08-python3-docutils_0.20.1+dfsg-3_all.deb ... 561s Unpacking python3-docutils (0.20.1+dfsg-3) ... 561s Selecting previously unselected package python3-pdbx. 561s Preparing to unpack .../09-python3-pdbx_2.0.1-2_all.deb ... 561s Unpacking python3-pdbx (2.0.1-2) ... 561s Selecting previously unselected package python3-propka. 561s Preparing to unpack .../10-python3-propka_3.5.1-1_all.deb ... 561s Unpacking python3-propka (3.5.1-1) ... 561s Selecting previously unselected package python3-pdb2pqr. 561s Preparing to unpack .../11-python3-pdb2pqr_3.6.1+dfsg-1_all.deb ... 561s Unpacking python3-pdb2pqr (3.6.1+dfsg-1) ... 561s Selecting previously unselected package pdb2pqr. 561s Preparing to unpack .../12-pdb2pqr_3.6.1+dfsg-1_all.deb ... 561s Unpacking pdb2pqr (3.6.1+dfsg-1) ... 561s Selecting previously unselected package autopkgtest-satdep. 561s Preparing to unpack .../13-1-autopkgtest-satdep.deb ... 561s Unpacking autopkgtest-satdep (0) ... 561s Setting up python3-propka (3.5.1-1) ... 562s Setting up python3-pdbx (2.0.1-2) ... 562s Setting up python3-roman (3.3-3) ... 562s Setting up libblas3:ppc64el (3.12.0-3) ... 562s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 562s Setting up libgfortran5:ppc64el (14-20240315-1ubuntu1) ... 562s Setting up sgml-base (1.31) ... 562s Setting up liblapack3:ppc64el (3.12.0-3) ... 562s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 562s Setting up python3-numpy (1:1.24.2-3ubuntu1) ... 565s Setting up xml-core (0.19) ... 565s Processing triggers for libc-bin (2.39-0ubuntu6) ... 565s Processing triggers for man-db (2.12.0-3build4) ... 566s Processing triggers for sgml-base (1.31) ... 566s Setting up docutils-common (0.20.1+dfsg-3) ... 566s Processing triggers for sgml-base (1.31) ... 566s Setting up python3-docutils (0.20.1+dfsg-3) ... 566s Setting up python3-pdb2pqr (3.6.1+dfsg-1) ... 567s Setting up pdb2pqr (3.6.1+dfsg-1) ... 567s Setting up autopkgtest-satdep (0) ... 569s (Reading database ... 113427 files and directories currently installed.) 569s Removing autopkgtest-satdep (0) ... 569s autopkgtest [22:42:16]: test installation-test: [----------------------- 569s Run pdb2pqr... 570s INFO:PDB2PQR v3.6.1: biomolecular structure conversion software. 570s INFO:Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 570s INFO:Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 570s INFO:Checking and transforming input arguments. 570s INFO:Loading topology files. 570s INFO:Loading molecule: examples/1a1p/1a1p.pdb 570s INFO:Setting up molecule. 570s WARNING:Unable to find amino or nucleic acid definition for NH2. Parsing as new residue. 570s INFO:Created biomolecule object with 14 residues and 208 atoms. 570s INFO:Setting termini states for biomolecule chains. 570s INFO:Loading forcefield. 570s INFO:Loading hydrogen topology definitions. 570s INFO:This biomolecule is clean. No repair needed. 570s INFO:Updating disulfide bridges. 570s INFO:Debumping biomolecule. 570s INFO:Adding hydrogens to biomolecule. 570s INFO:Debumping biomolecule (again). 570s INFO:Optimizing hydrogen bonds 570s INFO:Applying force field to biomolecule states. 570s INFO:Regenerating headers. 570s INFO:Regenerating PDB lines. 570s WARNING:Ignoring 852 header lines in output. 570s WARNING:Ignoring 3 missing lines in output. 570s autopkgtest [22:42:17]: test installation-test: -----------------------] 571s autopkgtest [22:42:18]: test installation-test: - - - - - - - - - - results - - - - - - - - - - 571s installation-test PASS 571s autopkgtest [22:42:18]: test pdb2pka-test: preparing testbed 574s Reading package lists... 574s Building dependency tree... 574s Reading state information... 574s Starting pkgProblemResolver with broken count: 0 574s Starting 2 pkgProblemResolver with broken count: 0 574s Done 575s The following additional packages will be installed: 575s fonts-font-awesome fonts-lato libjs-jquery libjs-sphinxdoc libjs-underscore 575s pdb2pqr-doc sphinx-rtd-theme-common 575s Recommended packages: 575s javascript-common 575s The following NEW packages will be installed: 575s autopkgtest-satdep fonts-font-awesome fonts-lato libjs-jquery 575s libjs-sphinxdoc libjs-underscore pdb2pqr-doc sphinx-rtd-theme-common 575s 0 upgraded, 8 newly installed, 0 to remove and 0 not upgraded. 575s Need to get 5162 kB/5162 kB of archives. 575s After this operation, 20.1 MB of additional disk space will be used. 575s Get:1 /tmp/autopkgtest.mW8XOV/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 575s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-lato all 2.015-1 [2781 kB] 575s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 575s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 575s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 575s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjs-sphinxdoc all 7.2.6-6 [149 kB] 575s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el sphinx-rtd-theme-common all 2.0.0+dfsg-1 [1012 kB] 576s Get:8 http://ftpmaster.internal/ubuntu noble/universe ppc64el pdb2pqr-doc all 3.6.1+dfsg-1 [258 kB] 576s Fetched 5162 kB in 1s (5432 kB/s) 576s Selecting previously unselected package fonts-lato. 576s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 113427 files and directories currently installed.) 576s Preparing to unpack .../0-fonts-lato_2.015-1_all.deb ... 576s Unpacking fonts-lato (2.015-1) ... 576s Selecting previously unselected package fonts-font-awesome. 576s Preparing to unpack .../1-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 576s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 576s Selecting previously unselected package libjs-jquery. 576s Preparing to unpack .../2-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 576s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 576s Selecting previously unselected package libjs-underscore. 576s Preparing to unpack .../3-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 576s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 576s Selecting previously unselected package libjs-sphinxdoc. 576s Preparing to unpack .../4-libjs-sphinxdoc_7.2.6-6_all.deb ... 576s Unpacking libjs-sphinxdoc (7.2.6-6) ... 576s Selecting previously unselected package sphinx-rtd-theme-common. 576s Preparing to unpack .../5-sphinx-rtd-theme-common_2.0.0+dfsg-1_all.deb ... 576s Unpacking sphinx-rtd-theme-common (2.0.0+dfsg-1) ... 576s Selecting previously unselected package pdb2pqr-doc. 576s Preparing to unpack .../6-pdb2pqr-doc_3.6.1+dfsg-1_all.deb ... 576s Unpacking pdb2pqr-doc (3.6.1+dfsg-1) ... 576s Selecting previously unselected package autopkgtest-satdep. 576s Preparing to unpack .../7-2-autopkgtest-satdep.deb ... 576s Unpacking autopkgtest-satdep (0) ... 576s Setting up fonts-lato (2.015-1) ... 576s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 576s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 576s Setting up sphinx-rtd-theme-common (2.0.0+dfsg-1) ... 576s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 576s Setting up libjs-sphinxdoc (7.2.6-6) ... 576s Setting up pdb2pqr-doc (3.6.1+dfsg-1) ... 576s Setting up autopkgtest-satdep (0) ... 579s (Reading database ... 113759 files and directories currently installed.) 579s Removing autopkgtest-satdep (0) ... 579s autopkgtest [22:42:26]: test pdb2pka-test: [----------------------- 579s Run pdb2pqr... 580s INFO:PDB2PQR v3.6.1: biomolecular structure conversion software. 580s INFO:Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 580s INFO:Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 580s INFO:Checking and transforming input arguments. 580s INFO:Loading topology files. 580s INFO:Loading molecule: 1a1p/1a1p.pdb 580s INFO:Setting up molecule. 580s WARNING:Unable to find amino or nucleic acid definition for NH2. Parsing as new residue. 580s INFO:Created biomolecule object with 14 residues and 208 atoms. 580s INFO:Setting termini states for biomolecule chains. 580s INFO:Loading forcefield. 580s INFO:Loading hydrogen topology definitions. 580s INFO:This biomolecule is clean. No repair needed. 580s INFO:Updating disulfide bridges. 580s INFO:Debumping biomolecule. 580s INFO:Adding hydrogens to biomolecule. 580s INFO:Debumping biomolecule (again). 580s INFO:Optimizing hydrogen bonds 580s INFO:Applying force field to biomolecule states. 580s INFO:Regenerating headers. 580s INFO:Regenerating PDB lines. 580s WARNING:Ignoring 852 header lines in output. 580s WARNING:Ignoring 3 missing lines in output. 580s autopkgtest [22:42:27]: test pdb2pka-test: -----------------------] 581s pdb2pka-test PASS 581s autopkgtest [22:42:28]: test pdb2pka-test: - - - - - - - - - - results - - - - - - - - - - 581s autopkgtest [22:42:28]: test command1: preparing testbed 582s Reading package lists... 582s Building dependency tree... 582s Reading state information... 583s Starting pkgProblemResolver with broken count: 0 583s Starting 2 pkgProblemResolver with broken count: 0 583s Done 583s The following additional packages will be installed: 583s python3-dateutil python3-iniconfig python3-packaging python3-pandas 583s python3-pandas-lib python3-pluggy python3-pytest python3-testfixtures 583s Suggested packages: 583s python-pandas-doc python3-statsmodels python-testfixtures-doc 583s Recommended packages: 583s python3-scipy python3-matplotlib python3-bottleneck python3-numexpr 583s python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml 583s python3-tables 583s The following NEW packages will be installed: 583s autopkgtest-satdep python3-dateutil python3-iniconfig python3-packaging 583s python3-pandas python3-pandas-lib python3-pluggy python3-pytest 583s python3-testfixtures 583s 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. 583s Need to get 12.3 MB/12.3 MB of archives. 583s After this operation, 78.8 MB of additional disk space will be used. 583s Get:1 /tmp/autopkgtest.mW8XOV/3-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [740 B] 583s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB] 583s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 583s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 23.2-1 [40.6 kB] 583s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB] 584s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 584s Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pluggy all 1.4.0-1 [20.4 kB] 584s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-pytest all 8.0.2-1 [248 kB] 584s Get:9 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-testfixtures all 8.1.0-1 [73.5 kB] 585s Fetched 12.3 MB in 1s (8278 kB/s) 585s Selecting previously unselected package python3-dateutil. 585s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 113759 files and directories currently installed.) 585s Preparing to unpack .../0-python3-dateutil_2.8.2-3_all.deb ... 585s Unpacking python3-dateutil (2.8.2-3) ... 585s Selecting previously unselected package python3-iniconfig. 585s Preparing to unpack .../1-python3-iniconfig_1.1.1-2_all.deb ... 585s Unpacking python3-iniconfig (1.1.1-2) ... 585s Selecting previously unselected package python3-packaging. 585s Preparing to unpack .../2-python3-packaging_23.2-1_all.deb ... 585s Unpacking python3-packaging (23.2-1) ... 585s Selecting previously unselected package python3-pandas-lib:ppc64el. 585s Preparing to unpack .../3-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_ppc64el.deb ... 585s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 585s Selecting previously unselected package python3-pandas. 585s Preparing to unpack .../4-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 585s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 585s Selecting previously unselected package python3-pluggy. 585s Preparing to unpack .../5-python3-pluggy_1.4.0-1_all.deb ... 585s Unpacking python3-pluggy (1.4.0-1) ... 586s Selecting previously unselected package python3-pytest. 586s Preparing to unpack .../6-python3-pytest_8.0.2-1_all.deb ... 586s Unpacking python3-pytest (8.0.2-1) ... 586s Selecting previously unselected package python3-testfixtures. 586s Preparing to unpack .../7-python3-testfixtures_8.1.0-1_all.deb ... 586s Unpacking python3-testfixtures (8.1.0-1) ... 586s Selecting previously unselected package autopkgtest-satdep. 586s Preparing to unpack .../8-3-autopkgtest-satdep.deb ... 586s Unpacking autopkgtest-satdep (0) ... 586s Setting up python3-iniconfig (1.1.1-2) ... 586s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 586s Setting up python3-testfixtures (8.1.0-1) ... 586s Setting up python3-packaging (23.2-1) ... 586s Setting up python3-pluggy (1.4.0-1) ... 586s Setting up python3-dateutil (2.8.2-3) ... 587s Setting up python3-pytest (8.0.2-1) ... 587s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 594s Setting up autopkgtest-satdep (0) ... 594s Processing triggers for man-db (2.12.0-3build4) ... 596s (Reading database ... 115773 files and directories currently installed.) 596s Removing autopkgtest-satdep (0) ... 597s autopkgtest [22:42:44]: test command1: pytest-3 597s autopkgtest [22:42:44]: test command1: [----------------------- 598s ============================= test session starts ============================== 598s platform linux -- Python 3.12.2, pytest-8.0.2, pluggy-1.4.0 598s rootdir: /tmp/autopkgtest.mW8XOV/build.bDX/src 598s configfile: pytest.ini 598s 598s ----------------------------- live log collection ------------------------------ 598s WARNING py.warnings:warnings.py:110 /tmp/autopkgtest.mW8XOV/build.bDX/src/tests/core_test.py:81: PytestUnknownMarkWarning: Unknown pytest.mark.long_test - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html 598s @pytest.mark.long_test 598s 598s ERROR regression_test:regression_test.py:173 Need to reinstate the --apbs-input test with a temporary directory as path 598s collected 316 items 598s 598s tests/core_test.py::test_short_pdb[1K1I] SKIPPED (not running tests ...) [ 0%] 598s tests/core_test.py::test_short_pdb[1AQO] SKIPPED (not running tests ...) [ 0%] 598s tests/core_test.py::test_short_pdb[7BNA] SKIPPED (not running tests ...) [ 0%] 598s tests/core_test.py::test_short_pdb[5D8V] SKIPPED (not running tests ...) [ 1%] 598s tests/core_test.py::test_short_pdb[1NAJ] SKIPPED (not running tests ...) [ 1%] 598s tests/core_test.py::test_short_pdb[4E8M] SKIPPED (not running tests ...) [ 1%] 598s tests/core_test.py::test_short_pdb[4UN3] SKIPPED (not running tests ...) [ 2%] 598s tests/core_test.py::test_short_pdb[1FAS] SKIPPED (not running tests ...) 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[ 65%] 598s tests/core_test.py::test_long_pdb[1TUD] SKIPPED (not running tests r...) [ 65%] 598s tests/core_test.py::test_long_pdb[4TTW] SKIPPED (not running tests r...) [ 65%] 598s tests/core_test.py::test_long_pdb[1IS5] SKIPPED (not running tests r...) [ 66%] 598s tests/core_test.py::test_broken_backbone[1EJG] 598s -------------------------------- live log call --------------------------------- 598s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_broken_backbone_1EJG_0/1EJG.log 598s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 598s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 598s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 598s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 598s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 598s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: 1EJG 599s INFO PDB2PQR3.6.1:main.py:768 Dropping water from structure. 599s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 599s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 46 residues and 650 atoms. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: N in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CA in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OG1 in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG2 in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: H1 in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: H2 in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: H3 in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HA in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG1 in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG21 in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG22 in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG23 in THR A 1. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in THR A 1. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CA in THR A 2. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in THR A 2. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OG1 in THR A 2. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG2 in THR A 2. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HA in THR A 2. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB in THR A 2. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG1 in THR A 2. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG21 in THR A 2. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG22 in THR A 2. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG23 in THR A 2. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in THR A 2. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CA in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: C in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: O in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG1 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG2 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD1 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HA in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG12 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG13 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG21 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG22 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG23 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD11 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD12 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD13 in ILE A 7. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in ILE A 7. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: N in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CA in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG1 in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG2 in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: H in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HA in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG11 in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG12 in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG13 in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG21 in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG22 in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG23 in VAL A 8. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in VAL A 8. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: NE in ARG A 10. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CZ in ARG A 10. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: NH1 in ARG A 10. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: NH2 in ARG A 10. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HE in ARG A 10. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HH11 in ARG A 10. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HH12 in ARG A 10. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HH21 in ARG A 10. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HH22 in ARG A 10. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in ARG A 10. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CA in ASN A 12. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in ASN A 12. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in ASN A 12. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OD1 in ASN A 12. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: ND2 in ASN A 12. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HA in ASN A 12. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB2 in ASN A 12. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB3 in ASN A 12. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD21 in ASN A 12. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD22 in ASN A 12. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in ASN A 12. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD1 in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD2 in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CE1 in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CE2 in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CZ in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD1 in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD2 in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HE1 in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HE2 in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HZ in PHE A 13. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in PHE A 13. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in PRO A 19. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB2 in PRO A 19. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB3 in PRO A 19. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG2 in PRO A 19. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG3 in PRO A 19. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD2 in PRO A 19. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD3 in PRO A 19. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in PRO A 19. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CA in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: C in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: O in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HA in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB2 in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB3 in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG2 in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG3 in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD2 in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD3 in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OG in SER A 22. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in SER A 22. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in GLU A 23. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD in GLU A 23. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OE1 in GLU A 23. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OE2 in GLU A 23. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG2 in GLU A 23. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG3 in GLU A 23. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in GLU A 23. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: N in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CA in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: C in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: O in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD1 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD2 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: H in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HA in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB2 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB3 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD11 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD12 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD13 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD21 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD22 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD23 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG1 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG2 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG12 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG13 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG21 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG22 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG23 in ILE A 25. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in ILE A 25. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD1 in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD2 in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CE1 in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CE2 in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CZ in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OH in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD1 in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD2 in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HE1 in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HE2 in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HH in TYR A 29. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in TYR A 29. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG1 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG2 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD1 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG12 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG13 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG21 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG22 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG23 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD11 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD12 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD13 in ILE A 34. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in ILE A 34. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in PRO A 36. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in PRO A 36. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB2 in PRO A 36. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB3 in PRO A 36. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG2 in PRO A 36. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG3 in PRO A 36. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in PRO A 36. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in THR A 39. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OG1 in THR A 39. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG2 in THR A 39. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB in THR A 39. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG21 in THR A 39. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG22 in THR A 39. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG23 in THR A 39. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in THR A 39. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in ASP A 43. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in ASP A 43. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OD1 in ASP A 43. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OD2 in ASP A 43. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB2 in ASP A 43. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB3 in ASP A 43. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in ASP A 43. At least one of the instances is being ignored. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in ASN A 46. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OD1 in ASN A 46. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: ND2 in ASN A 46. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD21 in ASN A 46. 599s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD22 in ASN A 46. 599s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in ASN A 46. At least one of the instances is being ignored. 599s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 599s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 599s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 599s INFO PDB2PQR3.6.1:main.py:459 This biomolecule is clean. No repair needed. 599s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 599s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 599s CRITICAL PDB2PQR3.6.1:main.py:800 Unable to debump biomolecule. Biomolecular structure is incomplete: Found gap in biomolecule structure for atom ATOM 405 CG SER 22 4.661 14.854 -4.058 0.0000 0.0000 599s CRITICAL PDB2PQR3.6.1:main.py:801 Giving up. 599s XFAIL [ 66%] 599s tests/core_test.py::test_broken_backbone[4MGP] 599s -------------------------------- live log call --------------------------------- 599s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_broken_backbone_4MGP_0/4MGP.log 600s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 600s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 600s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 600s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 600s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 600s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: 4MGP 600s INFO PDB2PQR3.6.1:main.py:768 Dropping water from structure. 600s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 600s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 23 residues and 163 atoms. 600s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CA in MET A 21. 600s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in MET A 21. 600s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in MET A 21. 600s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: SD in MET A 21. 600s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CE in MET A 21. 600s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in MET A 21. At least one of the instances is being ignored. 600s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 600s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 600s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CE in residue LYS A 11 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom NZ in residue LYS A 11 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CG in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CD in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CE in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom NZ in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CA in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom C in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom O in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CB in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OG in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CE in residue LYS A 11 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom NZ in residue LYS A 11 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CG in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CD in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CE in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom NZ in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CA in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom C in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom O in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CB in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OG in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue SER A 23 600s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 12 missing atoms in biomolecule. 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CE in residue LYS A 11 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom NZ in residue LYS A 11 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CG in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CD in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CE in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom NZ in residue LYS A 14 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CA in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom C in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom O in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CB in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OG in residue SER A 23 600s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue SER A 23 600s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom CE to residue LYS A 11 at coordinates 1.430, -1.683, -11.529 600s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom NZ to residue LYS A 11 at coordinates 1.940, -0.315, -11.800 600s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom CG to residue LYS A 14 at coordinates -1.600, -8.819, -6.913 600s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom CD to residue LYS A 14 at coordinates -2.056, -8.844, -8.361 600s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom CE to residue LYS A 14 at coordinates -3.548, -9.031, -8.498 600s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom NZ to residue LYS A 14 at coordinates -3.947, -9.048, -9.928 600s CRITICAL PDB2PQR3.6.1:main.py:800 Too few atoms present to reconstruct or cap residue SER A 23 in structure! This error is generally caused by missing backbone atoms in this biomolecule; you must use an external program to complete gaps in the biomolecule backbone. Heavy atoms missing from SER A 23: C O CB OG OXT CA 600s CRITICAL PDB2PQR3.6.1:main.py:801 Giving up. 600s XFAIL [ 66%] 600s tests/core_test.py::test_broken_backbone[2V75] 600s -------------------------------- live log call --------------------------------- 600s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_broken_backbone_2V75_0/2V75.log 600s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 600s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 600s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 600s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 600s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 600s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: 2V75 601s INFO PDB2PQR3.6.1:main.py:768 Dropping water from structure. 601s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 601s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 90 residues and 687 atoms. 601s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 601s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 601s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CA in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom C in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom O in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CB in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CG in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OD1 in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom ND2 in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CA in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom C in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom O in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CB in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CG in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OD1 in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom ND2 in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue ASN A 95 601s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 8 missing atoms in biomolecule. 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CA in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom C in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom O in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CB in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom CG in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OD1 in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom ND2 in residue ASN A 95 601s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue ASN A 95 601s CRITICAL PDB2PQR3.6.1:main.py:800 Too few atoms present to reconstruct or cap residue ASN A 95 in structure! This error is generally caused by missing backbone atoms in this biomolecule; you must use an external program to complete gaps in the biomolecule backbone. Heavy atoms missing from ASN A 95: C O CB CG OD1 ND2 OXT CA 601s CRITICAL PDB2PQR3.6.1:main.py:801 Giving up. 601s XFAIL [ 67%] 601s tests/core_test.py::test_broken_backbone[3U7T] 601s -------------------------------- live log call --------------------------------- 601s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_broken_backbone_3U7T_0/3U7T.log 601s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 601s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 601s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 601s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 601s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 601s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: 3U7T 602s INFO PDB2PQR3.6.1:main.py:768 Dropping water from structure. 602s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 602s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 46 residues and 652 atoms. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: N in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CA in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: C in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: O in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: OG in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HA in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB2 in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB3 in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG2 in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG3 in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD2 in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD3 in PRO A 22. 602s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in PRO A 22. At least one of the instances is being ignored. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: N in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CA in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: C in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: O in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CB in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG1 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG2 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD1 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: H in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HA in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG12 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG13 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG21 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG22 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG23 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD11 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD12 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD13 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CG in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: CD2 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB2 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HB3 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HG in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD21 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD22 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:418 Multiple occupancies found: HD23 in LEU A 25. 602s WARNING PDB2PQR3.6.1:main.py:424 Multiple occupancies found in LEU A 25. At least one of the instances is being ignored. 602s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 602s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 602s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 602s INFO PDB2PQR3.6.1:main.py:459 This biomolecule is clean. No repair needed. 602s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 602s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 602s CRITICAL PDB2PQR3.6.1:main.py:800 Unable to debump biomolecule. Biomolecular structure is incomplete: Found gap in biomolecule structure for atom ATOM 313 OG PRO 22 -13.108 -5.696 -15.739 0.0000 0.0000 602s CRITICAL PDB2PQR3.6.1:main.py:801 Giving up. 602s XFAIL [ 67%] 602s tests/core_test.py::test_protonated_terminals[C-terminal HID] 602s -------------------------------- live log call --------------------------------- 602s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_protonated_terminals_C_te0/cterm_hid.log 602s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 602s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 602s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 602s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 602s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 602s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/cterm_hid.pdb 602s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 602s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 14 residues and 115 atoms. 602s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 602s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 603s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 603s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue HIS B 209 603s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue HIS B 209 603s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 1 missing atoms in biomolecule. 603s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue HIS B 209 603s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue HIS B 209 at coordinates -25.652, 1.939, 26.402 603s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 603s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 603s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 603s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 603s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 603s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 603s INFO PDB2PQR3.6.1:main.py:707 Applying custom naming scheme (amber). 603s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 603s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 603s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 464 header lines in output. 603s INFO common:common.py:198 0 atoms have position differences > 0 603s INFO common:common.py:198 0 atoms have position differences > 0.01 603s INFO common:common.py:198 0 atoms have charge differences > 0 603s INFO common:common.py:198 0 atoms have charge differences > 0.01 603s INFO common:common.py:198 0 atoms have radius differences > 0 603s INFO common:common.py:198 0 atoms have radius differences > 0.01 603s PASSED [ 67%] 603s tests/core_test.py::test_cyclic_peptide[Cyclic peptide] 603s -------------------------------- live log call --------------------------------- 603s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_cyclic_peptide_Cyclic_pep0/5vav_cyclic_peptide.log 603s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 603s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 603s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 603s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 603s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 603s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/5vav_cyclic_peptide.pdb 603s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 603s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 14 residues and 209 atoms. 603s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 603s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 603s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 603s INFO PDB2PQR3.6.1:main.py:459 This biomolecule is clean. No repair needed. 603s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 603s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 603s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 603s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 603s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 603s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 603s INFO PDB2PQR3.6.1:main.py:707 Applying custom naming scheme (amber). 603s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 603s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 603s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 464 header lines in output. 603s INFO common:common.py:198 0 atoms have position differences > 0 603s INFO common:common.py:198 0 atoms have position differences > 0.01 603s INFO common:common.py:198 0 atoms have charge differences > 0 603s INFO common:common.py:198 0 atoms have charge differences > 0.01 603s INFO common:common.py:198 0 atoms have radius differences > 0 603s INFO common:common.py:198 0 atoms have radius differences > 0.01 603s PASSED [ 68%] 603s tests/io_test.py::test_read_pqr[tests/data/1HPX_with-ph=7.00_titration_state_method=propka_ligand=LIG_1HPX_ff=AMBER.pqr] PASSED [ 68%] 603s tests/io_test.py::test_read_pqr[tests/data/1A1P_assign-only_whitespace_ff=AMBER.pqr] PASSED [ 68%] 603s tests/io_test.py::test_read_pqr[tests/data/dx2cube.pqr] PASSED [ 68%] 603s tests/io_test.py::test_read_pqr[tests/data/1AFS_whitespace_ff=SWANSON.pqr] PASSED [ 69%] 603s tests/io_test.py::test_read_pqr[tests/data/1AFS_drop-water_ff=AMBER.pqr] PASSED [ 69%] 603s tests/io_test.py::test_read_pqr[tests/data/5vav_cyclic_peptide_out.pqr] PASSED [ 69%] 603s tests/io_test.py::test_read_pqr[tests/data/cterm_hid_out.pqr] PASSED [ 70%] 603s tests/io_test.py::test_read_pqr[tests/data/1AFS_userff_usernames_whitespace.pqr] PASSED [ 70%] 603s tests/io_test.py::test_read_pqr[tests/data/1AFS_whitespace_ff=PEOEPB.pqr] PASSED [ 70%] 603s tests/io_test.py::test_read_pqr[tests/data/1AFS_whitespace_ff=CHARMM.pqr] PASSED [ 71%] 603s tests/io_test.py::test_read_pqr[tests/data/1AFS_chain_whitespace_ff=AMBER.pqr] PASSED [ 71%] 603s tests/io_test.py::test_read_pqr[tests/data/1AFS_clean_whitespace.pqr] PASSED [ 71%] 604s tests/io_test.py::test_read_pqr[tests/data/1AFS_whitespace_ff=AMBER.pqr] PASSED [ 72%] 604s tests/io_test.py::test_read_pqr[tests/data/1AFS_nodebump_noopt_whitespace_ff=AMBER.pqr] PASSED [ 72%] 604s tests/io_test.py::test_read_pqr[tests/data/1AFS_neutralc_neutraln_whitespace_ff=PARSE.pqr] PASSED [ 72%] 604s tests/io_test.py::test_read_pqr[tests/data/1AFS_apbs-input_include-header_whitespace_ff=AMBER.pqr] PASSED [ 73%] 604s tests/io_test.py::test_read_pqr[tests/data/1AFS_whitespace_ff=PARSE.pqr] PASSED [ 73%] 604s tests/io_test.py::test_read_pqr[tests/data/1AFS_ff=AMBER.pqr] PASSED [ 73%] 604s tests/io_test.py::test_read_pqr[tests/data/1AFS_whitespace_ff=TYL06.pqr] PASSED [ 74%] 604s tests/io_test.py::test_read_qcd PASSED [ 74%] 604s tests/io_test.py::test_dx2cube 604s -------------------------------- live log call --------------------------------- 604s INFO io_test:io_test.py:44 Reading PQR from tests/data/dx2cube.pqr... 604s INFO io_test:io_test.py:47 Reading DX from tests/data/dx2cube.dx... 605s INFO io_test:io_test.py:50 Writing Cube to /tmp/pytest-of-ubuntu/pytest-0/test_dx2cube0/test.cube... 606s INFO io_test:io_test.py:53 Reading this cube from /tmp/pytest-of-ubuntu/pytest-0/test_dx2cube0/test.cube... 606s INFO io_test:io_test.py:55 Reading test cube from tests/data/dx2cube.cube... 607s INFO io_test:io_test.py:68 No differences found in output 607s PASSED [ 74%] 608s tests/ligand_test.py::test_peoe_charges 608s -------------------------------- live log call --------------------------------- 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s PASSED [ 75%] 608s tests/ligand_test.py::test_assign_parameters[1HPX-ligand.mol2] 608s -------------------------------- live log call --------------------------------- 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 608s INFO ligand_test:ligand_test.py:73 Total charge: 0.00 -> 0.00 608s PASSED [ 75%] 609s tests/ligand_test.py::test_assign_parameters[1QBS-ligand.mol2] 609s -------------------------------- live log call --------------------------------- 609s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 609s INFO ligand_test:ligand_test.py:73 Total charge: 0.00 -> -0.00 609s PASSED [ 75%] 609s tests/ligand_test.py::test_assign_parameters[1US0-ligand.mol2] 609s -------------------------------- live log call --------------------------------- 609s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 609s INFO ligand_test:ligand_test.py:73 Total charge: -1.00 -> -1.00 609s PASSED [ 75%] 609s tests/ligand_test.py::test_assign_parameters[acetate.mol2] 609s -------------------------------- live log call --------------------------------- 609s INFO ligand_test:ligand_test.py:73 Total charge: -1.00 -> -1.00 609s PASSED [ 76%] 609s tests/ligand_test.py::test_assign_parameters[acetonitrile.mol2] 609s -------------------------------- live log call --------------------------------- 609s INFO ligand_test:ligand_test.py:73 Total charge: 0.00 -> -0.00 609s PASSED [ 76%] 609s tests/ligand_test.py::test_assign_parameters[acetylcholine.mol2] 609s -------------------------------- live log call --------------------------------- 609s WARNING pdb2pqr.ligand.mol2:mol2.py:283 Correcting ammonium atom type. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:283 Correcting ammonium atom type. 609s INFO ligand_test:ligand_test.py:73 Total charge: 1.00 -> 1.00 609s PASSED [ 76%] 609s tests/ligand_test.py::test_assign_parameters[adp.mol2] 609s -------------------------------- live log call --------------------------------- 609s WARNING pdb2pqr.ligand.mol2:mol2.py:295 Correcting phosphate bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:295 Correcting phosphate bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:295 Correcting phosphate bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:253 Correcting aromatic nitrogen bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:253 Correcting aromatic nitrogen bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:261 Correcting aromatic carbon bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:295 Correcting phosphate bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:295 Correcting phosphate bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:295 Correcting phosphate bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:253 Correcting aromatic nitrogen bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:253 Correcting aromatic nitrogen bond order. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:261 Correcting aromatic carbon bond order. 609s INFO ligand_test:ligand_test.py:73 Total charge: -2.00 -> -2.00 609s PASSED [ 77%] 609s tests/ligand_test.py::test_assign_parameters[anthracene.mol2] 609s -------------------------------- live log call --------------------------------- 609s INFO ligand_test:ligand_test.py:73 Total charge: 0.00 -> -0.00 609s PASSED [ 77%] 609s tests/ligand_test.py::test_assign_parameters[cyclohexane.mol2] 609s -------------------------------- live log call --------------------------------- 609s INFO ligand_test:ligand_test.py:73 Total charge: 0.00 -> 0.00 609s PASSED [ 77%] 609s tests/ligand_test.py::test_assign_parameters[ethanol.mol2] 609s -------------------------------- live log call --------------------------------- 609s INFO ligand_test:ligand_test.py:73 Total charge: 0.00 -> 0.00 609s PASSED [ 78%] 609s tests/ligand_test.py::test_assign_parameters[fatty-acid.mol2] 609s -------------------------------- live log call --------------------------------- 609s INFO ligand_test:ligand_test.py:73 Total charge: -1.00 -> -1.00 609s PASSED [ 78%] 609s tests/ligand_test.py::test_assign_parameters[glycerol.mol2] 609s -------------------------------- live log call --------------------------------- 609s INFO ligand_test:ligand_test.py:73 Total charge: 0.00 -> 0.00 609s PASSED [ 78%] 609s tests/ligand_test.py::test_assign_parameters[naphthalene.mol2] 609s -------------------------------- live log call --------------------------------- 609s INFO ligand_test:ligand_test.py:73 Total charge: 0.00 -> -0.00 609s PASSED [ 79%] 609s tests/ligand_test.py::test_assign_parameters[pyrrole.mol2] 609s -------------------------------- live log call --------------------------------- 609s INFO ligand_test:ligand_test.py:73 Total charge: 0.00 -> 0.00 609s PASSED [ 79%] 609s tests/ligand_test.py::test_assign_parameters[tetramethylammonium.mol2] 609s -------------------------------- live log call --------------------------------- 609s WARNING pdb2pqr.ligand.mol2:mol2.py:283 Correcting ammonium atom type. 609s WARNING pdb2pqr.ligand.mol2:mol2.py:283 Correcting ammonium atom type. 609s INFO ligand_test:ligand_test.py:73 Total charge: 1.00 -> 1.00 609s PASSED [ 79%] 610s tests/ligand_test.py::test_formal_charge[1HPX-ligand.mol2] 610s -------------------------------- live log call --------------------------------- 610s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 610s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 610s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 610s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 610s PASSED [ 80%] 611s tests/ligand_test.py::test_formal_charge[1QBS-ligand.mol2] 611s -------------------------------- live log call --------------------------------- 611s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 611s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 611s PASSED [ 80%] 611s tests/ligand_test.py::test_formal_charge[1US0-ligand.mol2] 611s -------------------------------- live log call --------------------------------- 611s WARNING pdb2pqr.ligand.mol2:mol2.py:245 Correcting planar/amide bond order. 611s PASSED [ 80%] 611s tests/ligand_test.py::test_formal_charge[acetate.mol2] PASSED [ 81%] 611s tests/ligand_test.py::test_formal_charge[acetonitrile.mol2] PASSED [ 81%] 611s tests/ligand_test.py::test_formal_charge[acetylcholine.mol2] 611s -------------------------------- live log call --------------------------------- 611s WARNING pdb2pqr.ligand.mol2:mol2.py:283 Correcting ammonium atom type. 611s PASSED [ 81%] 611s tests/ligand_test.py::test_formal_charge[adp.mol2] 611s -------------------------------- live log call --------------------------------- 611s WARNING pdb2pqr.ligand.mol2:mol2.py:295 Correcting phosphate bond order. 611s WARNING pdb2pqr.ligand.mol2:mol2.py:295 Correcting phosphate bond order. 611s WARNING pdb2pqr.ligand.mol2:mol2.py:295 Correcting phosphate bond order. 611s WARNING pdb2pqr.ligand.mol2:mol2.py:253 Correcting aromatic nitrogen bond order. 611s WARNING pdb2pqr.ligand.mol2:mol2.py:253 Correcting aromatic nitrogen bond order. 611s WARNING pdb2pqr.ligand.mol2:mol2.py:261 Correcting aromatic carbon bond order. 611s PASSED [ 81%] 611s tests/ligand_test.py::test_formal_charge[anthracene.mol2] PASSED [ 82%] 611s tests/ligand_test.py::test_formal_charge[cyclohexane.mol2] PASSED [ 82%] 611s tests/ligand_test.py::test_formal_charge[ethanol.mol2] PASSED [ 82%] 611s tests/ligand_test.py::test_formal_charge[fatty-acid.mol2] PASSED [ 83%] 611s tests/ligand_test.py::test_formal_charge[glycerol.mol2] PASSED [ 83%] 611s tests/ligand_test.py::test_formal_charge[naphthalene.mol2] PASSED [ 83%] 611s tests/ligand_test.py::test_formal_charge[pyrrole.mol2] PASSED [ 84%] 611s tests/ligand_test.py::test_formal_charge[tetramethylammonium.mol2] 611s -------------------------------- live log call --------------------------------- 611s WARNING pdb2pqr.ligand.mol2:mol2.py:283 Correcting ammonium atom type. 611s PASSED [ 84%] 611s tests/ligand_test.py::test_torsions[acetylcholine.mol2] PASSED [ 84%] 611s tests/ligand_test.py::test_torsions[ethanol.mol2] PASSED [ 85%] 611s tests/ligand_test.py::test_torsions[pyrrole.mol2] PASSED [ 85%] 611s tests/ligand_test.py::test_torsions[tetramethylammonium.mol2] PASSED [ 85%] 611s tests/ligand_test.py::test_torsions[glycerol.mol2] PASSED [ 86%] 611s tests/ligand_test.py::test_torsions[cyclohexane.mol2] PASSED [ 86%] 612s tests/ligand_test.py::test_rings[1HPX-ligand.mol2] PASSED [ 86%] 613s tests/ligand_test.py::test_rings[1QBS-ligand.mol2] PASSED [ 87%] 613s tests/ligand_test.py::test_rings[1US0-ligand.mol2] PASSED [ 87%] 613s tests/ligand_test.py::test_rings[acetate.mol2] PASSED [ 87%] 613s tests/ligand_test.py::test_rings[acetonitrile.mol2] PASSED [ 87%] 613s tests/ligand_test.py::test_rings[acetylcholine.mol2] PASSED [ 88%] 613s tests/ligand_test.py::test_rings[adp.mol2] PASSED [ 88%] 613s tests/ligand_test.py::test_rings[anthracene.mol2] PASSED [ 88%] 613s tests/ligand_test.py::test_rings[cyclohexane.mol2] PASSED [ 89%] 613s tests/ligand_test.py::test_rings[ethanol.mol2] PASSED [ 89%] 613s tests/ligand_test.py::test_rings[fatty-acid.mol2] PASSED [ 89%] 613s tests/ligand_test.py::test_rings[glycerol.mol2] PASSED [ 90%] 613s tests/ligand_test.py::test_rings[naphthalene.mol2] PASSED [ 90%] 613s tests/ligand_test.py::test_rings[pyrrole.mol2] PASSED [ 90%] 613s tests/ligand_test.py::test_rings[tetramethylammonium.mol2] PASSED [ 91%] 613s tests/ligand_test.py::test_ligand_biomolecule[1HPX] SKIPPED (not run...) [ 91%] 613s tests/logging_test.py::test_log_output_in_pqr_location[1A1P.pdb-1A1P_assign-only_whitespace_ff=AMBER_log.pqr] PASSED [ 91%] 613s tests/propka_test.py::test_propka_apo[1K1I] SKIPPED (not running tes...) [ 92%] 613s tests/propka_test.py::test_propka_apo[1AFS] SKIPPED (not running tes...) [ 92%] 613s tests/propka_test.py::test_propka_apo[1FAS] SKIPPED (not running tes...) [ 92%] 613s tests/propka_test.py::test_propka_apo[5DV8] SKIPPED (not running tes...) [ 93%] 613s tests/propka_test.py::test_propka_apo[5D8V] SKIPPED (not running tes...) [ 93%] 613s tests/propka_test.py::test_propka_pka[1K1I] SKIPPED (not running tes...) [ 93%] 613s tests/propka_test.py::test_propka_pka[1AFS] SKIPPED (not running tes...) [ 93%] 613s tests/propka_test.py::test_propka_pka[1FAS] SKIPPED (not running tes...) [ 94%] 613s tests/propka_test.py::test_propka_pka[5DV8] SKIPPED (not running tes...) [ 94%] 613s tests/propka_test.py::test_propka_pka[5D8V] SKIPPED (not running tes...) [ 94%] 613s tests/regression_test.py::test_basic[1AFS basic local] 613s -------------------------------- live log call --------------------------------- 613s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_basic_1AFS_basic_local_0/output.log 613s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 614s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 614s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 614s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 614s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 614s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 614s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 614s WARNING pdb2pqr.biomolecule:biomolecule.py:992 Unable to find amino or nucleic acid definition for NAP. Parsing as new residue. 614s WARNING pdb2pqr.biomolecule:biomolecule.py:992 Unable to find amino or nucleic acid definition for TES. Parsing as new residue. 614s WARNING pdb2pqr.biomolecule:biomolecule.py:992 Unable to find amino or nucleic acid definition for NAP. Parsing as new residue. 614s WARNING pdb2pqr.biomolecule:biomolecule.py:992 Unable to find amino or nucleic acid definition for TES. Parsing as new residue. 614s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 614s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 614s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 614s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 614s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 614s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 614s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 614s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 614s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 614s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 614s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 614s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 614s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 614s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 614s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 614s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 615s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 616s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 618s WARNING pdb2pqr.debump:debump.py:354 Skipped atom during water optimization: H1 in HOH A 333 skipped when optimizing H2 in HOH A 334 618s WARNING pdb2pqr.debump:debump.py:354 Skipped atom during water optimization: H1 in HOH A 333 skipped when optimizing H2 in HOH A 334 618s WARNING pdb2pqr.debump:debump.py:354 Skipped atom during water optimization: H1 in HOH A 333 skipped when optimizing H2 in HOH A 334 618s WARNING pdb2pqr.debump:debump.py:354 Skipped atom during water optimization: H1 in HOH A 333 skipped when optimizing H2 in HOH A 334 618s WARNING pdb2pqr.debump:debump.py:354 Skipped atom during water optimization: H1 in HOH A 333 skipped when optimizing H2 in HOH A 334 618s WARNING pdb2pqr.debump:debump.py:354 Skipped atom during water optimization: H1 in HOH A 333 skipped when optimizing H2 in HOH A 334 618s WARNING pdb2pqr.debump:debump.py:354 Skipped atom during water optimization: H1 in HOH A 333 skipped when optimizing H2 in HOH A 334 618s WARNING pdb2pqr.debump:debump.py:354 Skipped atom during water optimization: H2 in HOH A 334 skipped when optimizing H2 in HOH A 333 618s WARNING pdb2pqr.debump:debump.py:354 Skipped atom during water optimization: H2 in HOH A 334 skipped when optimizing H2 in HOH A 333 618s WARNING pdb2pqr.io:io.py:40 Suppressing further "Skipped atom during water optimization" messages 622s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 622s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 622s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 622s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5424 header lines in output. 622s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 622s WARNING common:common.py:186 6 atoms have position differences > 0 622s INFO common:common.py:198 0 atoms have position differences > 0.01 622s INFO common:common.py:198 0 atoms have charge differences > 0 622s INFO common:common.py:198 0 atoms have charge differences > 0.01 622s INFO common:common.py:198 0 atoms have radius differences > 0 622s INFO common:common.py:198 0 atoms have radius differences > 0.01 622s PASSED [ 95%] 622s tests/regression_test.py::test_forcefields[1AFS whitespace AMBER] 622s -------------------------------- live log call --------------------------------- 622s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_forcefields_1AFS_whitespa0/output.log 622s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 622s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 622s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 622s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 622s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 622s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 622s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 622s WARNING pdb2pqr.biomolecule:biomolecule.py:992 Unable to find amino or nucleic acid definition for NAP. Parsing as new residue. 622s WARNING pdb2pqr.biomolecule:biomolecule.py:992 Unable to find amino or nucleic acid definition for TES. Parsing as new residue. 622s WARNING pdb2pqr.biomolecule:biomolecule.py:992 Unable to find amino or nucleic acid definition for NAP. Parsing as new residue. 622s WARNING pdb2pqr.biomolecule:biomolecule.py:992 Unable to find amino or nucleic acid definition for TES. Parsing as new residue. 622s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 622s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 622s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 622s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 622s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 622s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 622s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 622s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 622s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 622s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 622s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 622s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 622s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 622s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 622s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 623s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 623s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 625s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 630s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 630s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 630s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 630s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5424 header lines in output. 630s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 631s WARNING common:common.py:186 6 atoms have position differences > 0 631s INFO common:common.py:198 0 atoms have position differences > 0.01 631s INFO common:common.py:198 0 atoms have charge differences > 0 631s INFO common:common.py:198 0 atoms have charge differences > 0.01 631s INFO common:common.py:198 0 atoms have radius differences > 0 631s INFO common:common.py:198 0 atoms have radius differences > 0.01 631s PASSED [ 95%] 631s tests/regression_test.py::test_forcefields[1AFS whitespace CHARMM] 631s -------------------------------- live log call --------------------------------- 631s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_forcefields_1AFS_whitespa1/output.log 631s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 631s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 631s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 631s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 631s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 631s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 631s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 631s WARNING pdb2pqr.io:io.py:40 Suppressing further "Unable to find amino or nucleic acid definition for" messages 631s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 631s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 631s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 631s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 631s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 631s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 631s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 631s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 631s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 631s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 631s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 631s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 631s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 631s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 631s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 631s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 632s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 633s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 639s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 639s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 639s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 639s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5426 header lines in output. 639s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 639s WARNING common:common.py:186 5 atoms have position differences > 0 639s INFO common:common.py:198 0 atoms have position differences > 0.01 639s INFO common:common.py:198 0 atoms have charge differences > 0 639s INFO common:common.py:198 0 atoms have charge differences > 0.01 639s INFO common:common.py:198 0 atoms have radius differences > 0 639s INFO common:common.py:198 0 atoms have radius differences > 0.01 639s PASSED [ 95%] 639s tests/regression_test.py::test_forcefields[1AFS whitespace PARSE] 639s -------------------------------- live log call --------------------------------- 639s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_forcefields_1AFS_whitespa2/output.log 639s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 639s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 639s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 639s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 639s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 639s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 639s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 639s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 639s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 639s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 639s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 639s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 639s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 639s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 639s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 639s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 639s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 639s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 639s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 639s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 639s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 639s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 640s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 640s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 642s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 647s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 647s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 647s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 648s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5424 header lines in output. 648s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 648s WARNING common:common.py:186 6 atoms have position differences > 0 648s INFO common:common.py:198 0 atoms have position differences > 0.01 648s INFO common:common.py:198 0 atoms have charge differences > 0 648s INFO common:common.py:198 0 atoms have charge differences > 0.01 648s INFO common:common.py:198 0 atoms have radius differences > 0 648s INFO common:common.py:198 0 atoms have radius differences > 0.01 648s PASSED [ 96%] 648s tests/regression_test.py::test_forcefields[1AFS whitespace PEOEPB] 648s -------------------------------- live log call --------------------------------- 648s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_forcefields_1AFS_whitespa3/output.log 648s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 648s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 648s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 648s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 648s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 648s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 648s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 648s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 648s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 648s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 648s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 648s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 648s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 648s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 648s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 648s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 648s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 648s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 648s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 648s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 648s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 648s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 648s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 649s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 651s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 656s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 656s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 656s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 656s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5426 header lines in output. 656s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 656s WARNING common:common.py:186 6 atoms have position differences > 0 656s INFO common:common.py:198 0 atoms have position differences > 0.01 656s INFO common:common.py:198 0 atoms have charge differences > 0 656s INFO common:common.py:198 0 atoms have charge differences > 0.01 656s INFO common:common.py:198 0 atoms have radius differences > 0 656s INFO common:common.py:198 0 atoms have radius differences > 0.01 656s PASSED [ 96%] 656s tests/regression_test.py::test_forcefields[1AFS whitespace SWANSON] 656s -------------------------------- live log call --------------------------------- 656s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_forcefields_1AFS_whitespa4/output.log 656s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 656s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 656s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 656s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 656s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 657s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 657s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 657s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 657s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 657s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 657s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 657s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 657s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 657s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 657s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 657s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 657s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 657s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 657s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 657s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 657s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 657s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 657s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 658s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 659s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 665s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 665s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 665s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 665s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5428 header lines in output. 665s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 665s WARNING common:common.py:186 6 atoms have position differences > 0 665s INFO common:common.py:198 0 atoms have position differences > 0.01 665s INFO common:common.py:198 0 atoms have charge differences > 0 665s INFO common:common.py:198 0 atoms have charge differences > 0.01 665s INFO common:common.py:198 0 atoms have radius differences > 0 665s INFO common:common.py:198 0 atoms have radius differences > 0.01 665s PASSED [ 96%] 665s tests/regression_test.py::test_forcefields[1AFS whitespace TYL06] 665s -------------------------------- live log call --------------------------------- 665s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_forcefields_1AFS_whitespa5/output.log 665s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 665s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 665s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 665s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 665s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 665s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 665s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 665s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 665s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 665s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 665s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 665s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 665s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 665s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 665s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 665s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 665s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 665s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 665s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 665s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 665s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 665s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 665s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 666s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 668s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 673s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 673s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 673s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 673s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5424 header lines in output. 673s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 673s WARNING common:common.py:186 6 atoms have position differences > 0 673s INFO common:common.py:198 0 atoms have position differences > 0.01 673s INFO common:common.py:198 0 atoms have charge differences > 0 673s INFO common:common.py:198 0 atoms have charge differences > 0.01 673s INFO common:common.py:198 0 atoms have radius differences > 0 673s INFO common:common.py:198 0 atoms have radius differences > 0.01 673s PASSED [ 97%] 673s tests/regression_test.py::test_other_options[1AFS whitespace clean] 673s -------------------------------- live log call --------------------------------- 673s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_other_options_1AFS_whites0/output.log 673s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 674s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 674s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 674s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 674s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 674s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 674s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 674s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 674s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 674s INFO PDB2PQR3.6.1:main.py:778 Arguments specified cleaning only; skipping remaining steps. 674s INFO common:common.py:198 0 atoms have position differences > 0 674s INFO common:common.py:198 0 atoms have position differences > 0.01 674s INFO common:common.py:198 0 atoms have charge differences > 0 674s INFO common:common.py:198 0 atoms have charge differences > 0.01 674s INFO common:common.py:198 0 atoms have radius differences > 0 674s INFO common:common.py:198 0 atoms have radius differences > 0.01 674s PASSED [ 97%] 674s tests/regression_test.py::test_other_options[1A1P assign-only whitespace AMBER] 674s -------------------------------- live log call --------------------------------- 674s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_other_options_1A1P_assign0/output.log 674s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 674s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 674s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 674s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 674s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 674s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1A1P.pdb 674s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 674s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 14 residues and 208 atoms. 674s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 674s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 674s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 674s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 674s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 674s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 674s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 852 header lines in output. 674s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 3 missing lines in output. 674s INFO common:common.py:198 0 atoms have position differences > 0 674s INFO common:common.py:198 0 atoms have position differences > 0.01 674s INFO common:common.py:198 0 atoms have charge differences > 0 674s INFO common:common.py:198 0 atoms have charge differences > 0.01 674s INFO common:common.py:198 0 atoms have radius differences > 0 674s INFO common:common.py:198 0 atoms have radius differences > 0.01 674s PASSED [ 97%] 674s tests/regression_test.py::test_other_options[1A1P nodebump noopt whitespace AMBER] 674s -------------------------------- live log call --------------------------------- 674s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_other_options_1A1P_nodebu0/output.log 674s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 674s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 674s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 674s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 674s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 674s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1A1P.pdb 674s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 674s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 14 residues and 208 atoms. 674s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 674s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 674s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 674s INFO PDB2PQR3.6.1:main.py:459 This biomolecule is clean. No repair needed. 674s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 674s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 674s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 674s INFO pdb2pqr.hydrogens:__init__.py:370 Initializing water bonding optimization... 674s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 674s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 674s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 674s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 852 header lines in output. 674s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 3 missing lines in output. 674s INFO common:common.py:198 0 atoms have position differences > 0 674s INFO common:common.py:198 0 atoms have position differences > 0.01 674s INFO common:common.py:198 0 atoms have charge differences > 0 674s INFO common:common.py:198 0 atoms have charge differences > 0.01 674s INFO common:common.py:198 0 atoms have radius differences > 0 674s INFO common:common.py:198 0 atoms have radius differences > 0.01 674s PASSED [ 98%] 674s tests/regression_test.py::test_other_options[1AFS chain whitespace AMBER] 674s -------------------------------- live log call --------------------------------- 674s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_other_options_1AFS_chain_0/output.log 674s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 674s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 674s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 674s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 674s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 674s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 675s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 675s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 675s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 675s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 675s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 675s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 675s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 675s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 675s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 675s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 675s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 675s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 675s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 675s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 675s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 675s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 675s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 676s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 677s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 683s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 683s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 683s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 683s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5424 header lines in output. 683s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 683s WARNING common:common.py:186 6 atoms have position differences > 0 683s INFO common:common.py:198 0 atoms have position differences > 0.01 683s INFO common:common.py:198 0 atoms have charge differences > 0 683s INFO common:common.py:198 0 atoms have charge differences > 0.01 683s INFO common:common.py:198 0 atoms have radius differences > 0 683s INFO common:common.py:198 0 atoms have radius differences > 0.01 683s PASSED [ 98%] 683s tests/regression_test.py::test_other_options[1AFS neutralc neutraln PARSE] 683s -------------------------------- live log call --------------------------------- 683s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_other_options_1AFS_neutra0/output.log 683s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 683s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 683s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 683s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 683s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 683s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 683s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 683s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 683s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 683s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 683s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 683s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 683s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 683s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 683s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 683s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 683s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 683s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 683s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 683s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 683s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 683s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 684s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 684s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 686s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 691s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 691s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 691s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 691s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5424 header lines in output. 691s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 692s WARNING common:common.py:186 6 atoms have position differences > 0 692s INFO common:common.py:198 0 atoms have position differences > 0.01 692s INFO common:common.py:198 0 atoms have charge differences > 0 692s INFO common:common.py:198 0 atoms have charge differences > 0.01 692s INFO common:common.py:198 0 atoms have radius differences > 0 692s INFO common:common.py:198 0 atoms have radius differences > 0.01 692s PASSED [ 98%] 692s tests/regression_test.py::test_other_options[1AFS drop-water AMBER] 692s -------------------------------- live log call --------------------------------- 692s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_other_options_1AFS_drop_w0/output.log 692s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 692s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 692s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 692s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 692s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 692s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 692s INFO PDB2PQR3.6.1:main.py:768 Dropping water from structure. 692s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 692s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 642 residues and 5300 atoms. 692s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 692s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 692s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 692s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 692s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 692s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 692s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 692s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 692s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 692s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 692s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 692s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 692s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 692s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 692s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 693s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 695s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 698s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 698s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 698s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 698s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5424 header lines in output. 698s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 698s WARNING common:common.py:186 6 atoms have position differences > 0 698s INFO common:common.py:198 0 atoms have position differences > 0.01 698s INFO common:common.py:198 0 atoms have charge differences > 0 698s INFO common:common.py:198 0 atoms have charge differences > 0.01 698s INFO common:common.py:198 0 atoms have radius differences > 0 698s INFO common:common.py:198 0 atoms have radius differences > 0.01 698s PASSED [ 99%] 698s tests/regression_test.py::test_other_options[1AFS userff usernames whitespace] 698s -------------------------------- live log call --------------------------------- 698s INFO pdb2pqr.io:io.py:514 Logs stored: /tmp/pytest-of-ubuntu/pytest-0/test_other_options_1AFS_userff0/output.log 698s INFO PDB2PQR3.6.1:main.py:240 PDB2PQR v3.6.1: biomolecular structure conversion software. 698s INFO PDB2PQR3.6.1:main.py:242 Please cite: Jurrus E, et al. Improvements to the APBS biomolecular solvation software suite. Protein Sci 27 112-128 (2018). 698s INFO PDB2PQR3.6.1:main.py:242 Please cite: Dolinsky TJ, et al. PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res 35 W522-W525 (2007). 698s INFO PDB2PQR3.6.1:main.py:759 Checking and transforming input arguments. 698s INFO PDB2PQR3.6.1:main.py:763 Loading topology files. 698s INFO PDB2PQR3.6.1:main.py:765 Loading molecule: tests/data/1AFS.pdb 698s INFO PDB2PQR3.6.1:main.py:770 Setting up molecule. 698s INFO PDB2PQR3.6.1:main.py:408 Created biomolecule object with 700 residues and 5358 atoms. 698s INFO PDB2PQR3.6.1:main.py:774 Setting termini states for biomolecule chains. 698s INFO PDB2PQR3.6.1:main.py:604 Loading forcefield. 698s INFO PDB2PQR3.6.1:main.py:608 Loading hydrogen topology definitions. 698s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 698s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 698s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 698s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 698s INFO PDB2PQR3.6.1:main.py:618 Attempting to repair 2 missing atoms in biomolecule. 698s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE A 319 698s WARNING pdb2pqr.biomolecule:biomolecule.py:157 Missing atom OXT in residue PHE B 319 698s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE A 319 at coordinates -20.664, 13.168, 13.288 698s INFO pdb2pqr.biomolecule:biomolecule.py:1077 Added atom OXT to residue PHE B 319 at coordinates -20.299, 64.352, -34.928 698s INFO PDB2PQR3.6.1:main.py:623 Updating disulfide bridges. 698s INFO PDB2PQR3.6.1:main.py:626 Debumping biomolecule. 699s INFO PDB2PQR3.6.1:main.py:649 Adding hydrogens to biomolecule. 699s INFO PDB2PQR3.6.1:main.py:652 Debumping biomolecule (again). 701s INFO PDB2PQR3.6.1:main.py:654 Optimizing hydrogen bonds 706s INFO PDB2PQR3.6.1:main.py:666 Applying force field to biomolecule states. 706s INFO PDB2PQR3.6.1:main.py:713 Regenerating headers. 706s INFO PDB2PQR3.6.1:main.py:738 Regenerating PDB lines. 706s WARNING PDB2PQR3.6.1:main.py:311 Ignoring 5424 header lines in output. 706s WARNING PDB2PQR3.6.1:main.py:315 Ignoring 138 missing lines in output. 707s WARNING common:common.py:186 6 atoms have position differences > 0 707s INFO common:common.py:198 0 atoms have position differences > 0.01 707s INFO common:common.py:198 0 atoms have charge differences > 0 707s INFO common:common.py:198 0 atoms have charge differences > 0.01 707s INFO common:common.py:198 0 atoms have radius differences > 0 707s INFO common:common.py:198 0 atoms have radius differences > 0.01 707s PASSED [ 99%] 707s tests/test_version.py::test_version_exists PASSED [ 99%] 707s tests/test_version.py::test_version PASSED [100%] 707s 707s =============================== warnings summary =============================== 707s ../../../../usr/lib/python3/dist-packages/dateutil/tz/tz.py:37 707s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). 707s EPOCH = datetime.datetime.utcfromtimestamp(0) 707s 707s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 707s ====== 92 passed, 220 skipped, 4 xfailed, 1 warning in 109.33s (0:01:49) ======= 707s autopkgtest [22:44:34]: test command1: -----------------------] 708s autopkgtest [22:44:35]: test command1: - - - - - - - - - - results - - - - - - - - - - 708s command1 PASS 709s autopkgtest [22:44:36]: @@@@@@@@@@@@@@@@@@@@ summary 709s installation-test PASS 709s pdb2pka-test PASS 709s command1 PASS 725s Creating nova instance adt-noble-ppc64el-pdb2pqr-20240326-223247-juju-7f2275-prod-proposed-migration-environment-3-65060660-a5e1-4c8e-9314-20adeeceabee from image adt/ubuntu-noble-ppc64el-server-20240325.img (UUID 2c4a456c-136a-4a3a-993e-7f82eda3b6c0)...