0s autopkgtest [22:40:02]: starting date and time: 2024-04-18 22:40:02+0000 0s autopkgtest [22:40:02]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [22:40:02]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ygoh19ck/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ocl-icd --apt-upgrade openmm --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=ocl-icd/2.3.2-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-7.secgroup --name adt-noble-ppc64el-openmm-20240418-224002-juju-7f2275-prod-proposed-migration-environment-2-94312cdc-d842-40cb-afb5-bf88cdbc134f --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 142s autopkgtest [22:42:24]: testbed dpkg architecture: ppc64el 143s autopkgtest [22:42:25]: testbed apt version: 2.7.14build2 143s autopkgtest [22:42:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 144s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 144s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B] 144s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.2 kB] 144s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [62.2 kB] 144s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [399 kB] 144s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [118 kB] 144s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 144s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [976 B] 144s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 144s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [573 kB] 144s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 144s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [1004 B] 144s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 147s Fetched 1298 kB in 1s (1194 kB/s) 147s Reading package lists... 149s sh: 4: dhclient: not found 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Calculating upgrade... 150s The following packages will be upgraded: 150s libkeyutils1 libnuma1 netcat-openbsd numactl 150s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 150s Need to get 129 kB of archives. 150s After this operation, 0 B of additional disk space will be used. 150s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libkeyutils1 ppc64el 1.6.3-3build1 [11.0 kB] 150s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el netcat-openbsd ppc64el 1.226-1ubuntu2 [46.2 kB] 151s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libnuma1 ppc64el 2.0.18-1build1 [28.2 kB] 151s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el numactl ppc64el 2.0.18-1build1 [43.9 kB] 151s Fetched 129 kB in 1s (248 kB/s) 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 151s Preparing to unpack .../libkeyutils1_1.6.3-3build1_ppc64el.deb ... 151s Unpacking libkeyutils1:ppc64el (1.6.3-3build1) over (1.6.3-3) ... 151s Preparing to unpack .../netcat-openbsd_1.226-1ubuntu2_ppc64el.deb ... 151s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ... 151s Preparing to unpack .../libnuma1_2.0.18-1build1_ppc64el.deb ... 151s Unpacking libnuma1:ppc64el (2.0.18-1build1) over (2.0.18-1) ... 151s Preparing to unpack .../numactl_2.0.18-1build1_ppc64el.deb ... 151s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ... 151s Setting up libkeyutils1:ppc64el (1.6.3-3build1) ... 151s Setting up netcat-openbsd (1.226-1ubuntu2) ... 151s Setting up libnuma1:ppc64el (2.0.18-1build1) ... 151s Setting up numactl (2.0.18-1build1) ... 151s Processing triggers for man-db (2.12.0-4build1) ... 152s Processing triggers for libc-bin (2.39-0ubuntu8) ... 152s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 153s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 153s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 153s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 154s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 155s Reading package lists... 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Calculating upgrade... 155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Reading package lists... 155s Building dependency tree... 155s Reading state information... 156s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s autopkgtest [22:42:41]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr 4 22:47:57 UTC 2024 159s autopkgtest [22:42:41]: @@@@@@@@@@@@@@@@@@@@ apt-source openmm 167s Get:1 http://ftpmaster.internal/ubuntu noble/universe openmm 8.0.0+dfsg-6.1ubuntu2 (dsc) [2637 B] 167s Get:2 http://ftpmaster.internal/ubuntu noble/universe openmm 8.0.0+dfsg-6.1ubuntu2 (tar) [11.3 MB] 167s Get:3 http://ftpmaster.internal/ubuntu noble/universe openmm 8.0.0+dfsg-6.1ubuntu2 (diff) [19.3 kB] 168s gpgv: Signature made Sun Mar 31 20:24:58 2024 UTC 168s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 168s gpgv: issuer "steve.langasek@ubuntu.com" 168s gpgv: Can't check signature: No public key 168s dpkg-source: warning: cannot verify inline signature for ./openmm_8.0.0+dfsg-6.1ubuntu2.dsc: no acceptable signature found 169s autopkgtest [22:42:51]: testing package openmm version 8.0.0+dfsg-6.1ubuntu2 170s autopkgtest [22:42:52]: build not needed 299s autopkgtest [22:45:01]: test command1: preparing testbed 300s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s Starting pkgProblemResolver with broken count: 0 301s Starting 2 pkgProblemResolver with broken count: 0 301s Done 301s The following additional packages will be installed: 301s libblas3 libgfortran5 liblapack3 libopenmm-dev libopenmm8.0t64 301s python3-iniconfig python3-numpy python3-openmm python3-packaging 301s python3-pluggy python3-pytest 301s Suggested packages: 301s gcc gfortran python3-dev 301s The following NEW packages will be installed: 301s autopkgtest-satdep libblas3 libgfortran5 liblapack3 libopenmm-dev 301s libopenmm8.0t64 python3-iniconfig python3-numpy python3-openmm 301s python3-packaging python3-pluggy python3-pytest 301s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 301s Need to get 14.1 MB/14.1 MB of archives. 301s After this operation, 90.5 MB of additional disk space will be used. 301s Get:1 /tmp/autopkgtest.B00OHs/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 301s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 302s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240412-0ubuntu1 [574 kB] 302s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 302s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libopenmm8.0t64 ppc64el 8.0.0+dfsg-6.1ubuntu2 [894 kB] 303s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el libopenmm-dev ppc64el 8.0.0+dfsg-6.1ubuntu2 [347 kB] 303s Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 303s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.26.4+ds-6ubuntu1 [4446 kB] 303s Get:9 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-openmm ppc64el 8.0.0+dfsg-6.1ubuntu2 [4444 kB] 304s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 24.0-1 [41.1 kB] 304s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pluggy all 1.4.0-1 [20.4 kB] 304s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pytest all 7.4.4-1 [305 kB] 304s Fetched 14.1 MB in 3s (5420 kB/s) 304s Selecting previously unselected package libblas3:ppc64el. 304s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 304s Preparing to unpack .../00-libblas3_3.12.0-3build1_ppc64el.deb ... 304s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 304s Selecting previously unselected package libgfortran5:ppc64el. 304s Preparing to unpack .../01-libgfortran5_14-20240412-0ubuntu1_ppc64el.deb ... 304s Unpacking libgfortran5:ppc64el (14-20240412-0ubuntu1) ... 304s Selecting previously unselected package liblapack3:ppc64el. 304s Preparing to unpack .../02-liblapack3_3.12.0-3build1_ppc64el.deb ... 304s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 304s Selecting previously unselected package libopenmm8.0t64. 304s Preparing to unpack .../03-libopenmm8.0t64_8.0.0+dfsg-6.1ubuntu2_ppc64el.deb ... 304s Unpacking libopenmm8.0t64 (8.0.0+dfsg-6.1ubuntu2) ... 304s Selecting previously unselected package libopenmm-dev. 304s Preparing to unpack .../04-libopenmm-dev_8.0.0+dfsg-6.1ubuntu2_ppc64el.deb ... 304s Unpacking libopenmm-dev (8.0.0+dfsg-6.1ubuntu2) ... 304s Selecting previously unselected package python3-iniconfig. 304s Preparing to unpack .../05-python3-iniconfig_1.1.1-2_all.deb ... 304s Unpacking python3-iniconfig (1.1.1-2) ... 304s Selecting previously unselected package python3-numpy. 304s Preparing to unpack .../06-python3-numpy_1%3a1.26.4+ds-6ubuntu1_ppc64el.deb ... 304s Unpacking python3-numpy (1:1.26.4+ds-6ubuntu1) ... 305s Selecting previously unselected package python3-openmm. 305s Preparing to unpack .../07-python3-openmm_8.0.0+dfsg-6.1ubuntu2_ppc64el.deb ... 305s Unpacking python3-openmm (8.0.0+dfsg-6.1ubuntu2) ... 305s Selecting previously unselected package python3-packaging. 305s Preparing to unpack .../08-python3-packaging_24.0-1_all.deb ... 305s Unpacking python3-packaging (24.0-1) ... 305s Selecting previously unselected package python3-pluggy. 305s Preparing to unpack .../09-python3-pluggy_1.4.0-1_all.deb ... 305s Unpacking python3-pluggy (1.4.0-1) ... 305s Selecting previously unselected package python3-pytest. 305s Preparing to unpack .../10-python3-pytest_7.4.4-1_all.deb ... 305s Unpacking python3-pytest (7.4.4-1) ... 305s Selecting previously unselected package autopkgtest-satdep. 305s Preparing to unpack .../11-1-autopkgtest-satdep.deb ... 305s Unpacking autopkgtest-satdep (0) ... 305s Setting up python3-iniconfig (1.1.1-2) ... 305s Setting up libblas3:ppc64el (3.12.0-3build1) ... 305s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 305s Setting up python3-packaging (24.0-1) ... 305s Setting up libgfortran5:ppc64el (14-20240412-0ubuntu1) ... 305s Setting up python3-pluggy (1.4.0-1) ... 306s Setting up libopenmm8.0t64 (8.0.0+dfsg-6.1ubuntu2) ... 306s Setting up liblapack3:ppc64el (3.12.0-3build1) ... 306s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 306s Setting up python3-pytest (7.4.4-1) ... 306s Setting up libopenmm-dev (8.0.0+dfsg-6.1ubuntu2) ... 306s Setting up python3-numpy (1:1.26.4+ds-6ubuntu1) ... 309s Setting up python3-openmm (8.0.0+dfsg-6.1ubuntu2) ... 309s /usr/lib/python3/dist-packages/openmm/__init__.py:16: SyntaxWarning: invalid escape sequence '\p' 309s os.environ['PATH'] = '%(lib)s;%(lib)s\plugins;%(path)s' % { 309s /usr/lib/python3/dist-packages/openmm/app/gromacsgrofile.py:62: SyntaxWarning: invalid escape sequence '\.' 309s return match('^[-+]?[0-9]*\.?[0-9]*([eEdD][-+]?[0-9]+)?$',word) 309s /usr/lib/python3/dist-packages/openmm/app/internal/amber_file_parser.py:65: SyntaxWarning: invalid escape sequence '\(' 309s FORMAT_RE_PATTERN=re.compile("([0-9]+)\(?([a-zA-Z]+)([0-9]+)\.?([0-9]*)\)?") 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1071: SyntaxWarning: invalid escape sequence '\.' 309s if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbstructure.py:1082: SyntaxWarning: invalid escape sequence '\.' 309s if not re.match("pdb.%2s.\.ent\.gz" % subdir , pdb_file): 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:358: SyntaxWarning: invalid escape sequence '\S' 309s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:360: SyntaxWarning: invalid escape sequence '\s' 309s "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:361: SyntaxWarning: invalid escape sequence '\s' 309s "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:363: SyntaxWarning: invalid escape sequence '\s' 309s "(?:\s*#.*$)" "|" # comments (dumped) 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:365: SyntaxWarning: invalid escape sequence '\S' 309s "(\S+)" # unquoted words 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:416: SyntaxWarning: invalid escape sequence '\S' 309s """ Tokenizer method for the mmCIF syntax file - 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:444: SyntaxWarning: invalid escape sequence '\S' 309s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:446: SyntaxWarning: invalid escape sequence '\s' 309s "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:448: SyntaxWarning: invalid escape sequence '\s' 309s "(?:\s*#.*$)" "|" # comments (dumped) 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxParser.py:450: SyntaxWarning: invalid escape sequence '\S' 309s "(\S+)" # unquoted words 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:347: SyntaxWarning: invalid escape sequence '\S' 309s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:349: SyntaxWarning: invalid escape sequence '\s' 309s "(?:['](.*?)(?:[']\s|[']$))" "|" # single quoted strings 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:350: SyntaxWarning: invalid escape sequence '\s' 309s "(?:[\"](.*?)(?:[\"]\s|[\"]$))" "|" # double quoted strings 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:352: SyntaxWarning: invalid escape sequence '\s' 309s "(?:\s*#.*$)" "|" # comments (dumped) 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:354: SyntaxWarning: invalid escape sequence '\S' 309s "(\S+)" # unquoted words 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:419: SyntaxWarning: invalid escape sequence '\S' 309s "(?:_(.+?)[.](\S+))" "|" # _category.attribute 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:421: SyntaxWarning: invalid escape sequence '\s' 309s "(?:['\"](.*?)(?:['\"]\s|['\"]$))" "|" # quoted strings 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:423: SyntaxWarning: invalid escape sequence '\s' 309s "(?:\s*#.*$)" "|" # comments (dumped) 309s /usr/lib/python3/dist-packages/openmm/app/internal/pdbx/reader/PdbxReader.py:425: SyntaxWarning: invalid escape sequence '\S' 309s "(\S+)" # unquoted words 309s /usr/lib/python3/dist-packages/openmm/app/metadynamics.py:247: SyntaxWarning: invalid escape sequence '\.' 309s pattern = re.compile('bias_(.*)_(.*)\.npy') 309s /usr/lib/python3/dist-packages/openmm/openmm.py:5952: SyntaxWarning: invalid escape sequence '\S' 309s match = re.search("<([^?]\S*)", inputString) 309s Setting up autopkgtest-satdep (0) ... 309s Processing triggers for man-db (2.12.0-4build1) ... 309s Processing triggers for libc-bin (2.39-0ubuntu8) ... 312s (Reading database ... 73480 files and directories currently installed.) 312s Removing autopkgtest-satdep (0) ... 313s autopkgtest [22:45:15]: test command1: cd wrappers/python/tests && pytest-3 313s autopkgtest [22:45:15]: test command1: [----------------------- 315s ============================= test session starts ============================== 315s platform linux -- Python 3.12.3, pytest-7.4.4, pluggy-1.4.0 315s rootdir: /tmp/autopkgtest.B00OHs/build.vuU/src/wrappers/python/tests 315s configfile: pytest.ini 315s collected 311 items 315s 315s TestAPIUnits.py ................................. [ 10%] 315s TestAmberInpcrdFile.py .....s [ 12%] 330s TestAmberPrmtopFile.py ...................... [ 19%] 330s TestBytes.py . [ 19%] 372s TestCharmmFiles.py ....s..........s......... [ 27%] 372s TestCheckpointReporter.py . [ 28%] 372s TestDcdFile.py ... [ 29%] 376s TestDesmondDMSFile.py ....... [ 31%] 377s TestElement.py .... [ 32%] 411s TestForceField.py s........................................ss..s.. [ 48%] 412s TestForceGroups.py ... [ 49%] 412s TestGenerators.py .. [ 49%] 412s TestGromacsGroFile.py . [ 50%] 412s TestGromacsTopFile.py ssssssssssssss [ 54%] 1121s TestIntegrators.py .s..... [ 56%] 1124s TestMetadynamics.py . [ 57%] 1189s TestModeller.py .............s............. [ 65%] 1189s TestNumpyCompatibility.py ......... [ 68%] 1189s TestPatches.py ..... [ 70%] 1200s TestPdbFile.py ...... [ 72%] 1202s TestPdbxFile.py ....... [ 74%] 1204s TestPickle.py ... [ 75%] 1210s TestSimulatedTempering.py .. [ 76%] 1255s TestSimulation.py ...... [ 78%] 1255s TestStateDataReporter.py . [ 78%] 1255s TestSwigWrappers.py . [ 78%] 1255s TestTopology.py ... [ 79%] 1255s TestUnitCell.py .. [ 80%] 1255s TestUnits.py ...................................................... [ 97%] 1255s TestVec3.py ....... [100%] 1255s 1255s =============================== warnings summary =============================== 1255s TestAmberPrmtopFile.py::TestAmberPrmtopFile::testNucleicGBParametes 1255s TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolvent 1255s TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolventForces 1255s TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolventParameters 1255s /usr/lib/python3/dist-packages/openmm/app/internal/amber_file_parser.py:1165: UserWarning: Non-optimal GB parameters detected for GB model GBn 1255s warnings.warn( 1255s 1255s TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolvent 1255s TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolventForces 1255s TestAmberPrmtopFile.py::TestAmberPrmtopFile::test_ImplicitSolventParameters 1255s /usr/lib/python3/dist-packages/openmm/app/internal/amber_file_parser.py:1165: UserWarning: Non-optimal GB parameters detected for GB model HCT 1255s warnings.warn( 1255s 1255s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1255s =========== 288 passed, 23 skipped, 7 warnings in 942.22s (0:15:42) ============ 1256s autopkgtest [23:00:58]: test command1: -----------------------] 1256s command1 PASS 1256s autopkgtest [23:00:58]: test command1: - - - - - - - - - - results - - - - - - - - - - 1257s autopkgtest [23:00:59]: @@@@@@@@@@@@@@@@@@@@ summary 1257s command1 PASS 1268s Creating nova instance adt-noble-ppc64el-openmm-20240418-224002-juju-7f2275-prod-proposed-migration-environment-2-94312cdc-d842-40cb-afb5-bf88cdbc134f from image adt/ubuntu-noble-ppc64el-server-20240418.img (UUID eb57e9e5-70fe-4878-ae85-dd88e864cb24)...