0s autopkgtest [15:47:40]: starting date and time: 2024-03-23 15:47:40+0000 0s autopkgtest [15:47:40]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:47:40]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.69gvwuqk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade nanosv --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-20.secgroup --name adt-noble-ppc64el-nanosv-20240323-154740-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 186s autopkgtest [15:50:46]: testbed dpkg architecture: ppc64el 186s autopkgtest [15:50:46]: testbed apt version: 2.7.12 186s autopkgtest [15:50:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup 187s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 187s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 187s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 187s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 187s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 187s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 188s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 188s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 188s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 188s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 188s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 188s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 188s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 191s Fetched 9623 kB in 2s (4110 kB/s) 191s Reading package lists... 194s Reading package lists... 194s Building dependency tree... 194s Reading state information... 194s Calculating upgrade... 194s The following packages will be REMOVED: 194s libssl3 194s The following NEW packages will be installed: 194s libssl3t64 194s The following packages have been kept back: 194s curl 194s The following packages will be upgraded: 194s cloud-init fonts-ubuntu-console libbsd0 libc-bin libc6 locales openssl 194s python3-markupsafe 195s 8 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 195s Need to get 12.1 MB of archives. 195s After this operation, 10.2 kB of additional disk space will be used. 195s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6 ppc64el 2.39-0ubuntu6 [3274 kB] 195s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-bin ppc64el 2.39-0ubuntu6 [751 kB] 195s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 195s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 196s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libbsd0 ppc64el 0.12.1-1 [56.9 kB] 196s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el locales all 2.39-0ubuntu6 [4232 kB] 196s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB] 196s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-markupsafe ppc64el 2.1.5-1build1 [13.2 kB] 196s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el cloud-init all 24.1.2-0ubuntu1 [597 kB] 196s Preconfiguring packages ... 196s Fetched 12.1 MB in 1s (8207 kB/s) 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 196s Preparing to unpack .../libc6_2.39-0ubuntu6_ppc64el.deb ... 197s Unpacking libc6:ppc64el (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 197s Setting up libc6:ppc64el (2.39-0ubuntu6) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 197s Preparing to unpack .../libc-bin_2.39-0ubuntu6_ppc64el.deb ... 197s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 197s Setting up libc-bin (2.39-0ubuntu6) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 197s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 197s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 198s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 198s wget depends on libssl3 (>= 3.0.0). 198s tnftp depends on libssl3 (>= 3.0.0). 198s tcpdump depends on libssl3 (>= 3.0.0). 198s systemd-resolved depends on libssl3 (>= 3.0.0). 198s systemd depends on libssl3 (>= 3.0.0). 198s sudo depends on libssl3 (>= 3.0.0). 198s rsync depends on libssl3 (>= 3.0.0). 198s python3-cryptography depends on libssl3 (>= 3.0.0). 198s openssh-server depends on libssl3 (>= 3.0.10). 198s openssh-client depends on libssl3 (>= 3.0.10). 198s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 198s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 198s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 198s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 198s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 198s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 198s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 198s libnvme1 depends on libssl3 (>= 3.0.0). 198s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 198s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 198s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 198s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 198s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 198s kmod depends on libssl3 (>= 3.0.0). 198s dhcpcd-base depends on libssl3 (>= 3.0.0). 198s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 198s 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 198s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 198s Selecting previously unselected package libssl3t64:ppc64el. 198s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70146 files and directories currently installed.) 198s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 198s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 198s Preparing to unpack .../1-libbsd0_0.12.1-1_ppc64el.deb ... 198s Unpacking libbsd0:ppc64el (0.12.1-1) over (0.11.8-1) ... 198s Preparing to unpack .../2-locales_2.39-0ubuntu6_all.deb ... 198s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 198s Preparing to unpack .../3-fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ... 198s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ... 198s Preparing to unpack .../4-python3-markupsafe_2.1.5-1build1_ppc64el.deb ... 198s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ... 198s Preparing to unpack .../5-cloud-init_24.1.2-0ubuntu1_all.deb ... 198s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ... 198s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ... 198s Setting up cloud-init (24.1.2-0ubuntu1) ... 200s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 200s Setting up locales (2.39-0ubuntu6) ... 200s Generating locales (this might take a while)... 202s en_US.UTF-8... done 202s Generation complete. 202s Setting up python3-markupsafe (2.1.5-1build1) ... 202s Setting up openssl (3.0.13-0ubuntu2) ... 202s Setting up libbsd0:ppc64el (0.12.1-1) ... 202s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 202s Processing triggers for man-db (2.12.0-3) ... 203s Processing triggers for libc-bin (2.39-0ubuntu6) ... 203s Reading package lists... 203s Building dependency tree... 203s Reading state information... 203s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 204s sh: Attempting to set up Debian/Ubuntu apt sources automatically 204s sh: Distribution appears to be Ubuntu 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 205s eatmydata is already the newest version (131-1). 205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 206s dbus is already the newest version (1.14.10-4ubuntu1). 206s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 206s rng-tools-debian is already the newest version (2.4). 206s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 206s The following packages will be REMOVED: 206s cloud-init* python3-configobj* python3-debconf* 206s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 206s After this operation, 3256 kB disk space will be freed. 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 206s Removing cloud-init (24.1.2-0ubuntu1) ... 207s Removing python3-configobj (5.0.8-3) ... 207s Removing python3-debconf (1.5.86) ... 207s Processing triggers for man-db (2.12.0-3) ... 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 207s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 208s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 208s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 208s invoke-rc.d: policy-rc.d denied execution of try-restart. 208s Reading package lists... 208s Building dependency tree... 208s Reading state information... 208s linux-generic is already the newest version (6.8.0-11.11+1). 208s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 209s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 209s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 209s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 211s Reading package lists... 211s Reading package lists... 212s Building dependency tree... 212s Reading state information... 212s Calculating upgrade... 212s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 212s Reading package lists... 212s Building dependency tree... 212s Reading state information... 212s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 212s autopkgtest [15:51:12]: rebooting testbed after setup commands that affected boot 370s autopkgtest [15:53:50]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 373s autopkgtest [15:53:53]: @@@@@@@@@@@@@@@@@@@@ apt-source nanosv 375s Get:1 http://ftpmaster.internal/ubuntu noble/universe nanosv 1.2.4+git20190409.c1ae30c-6 (dsc) [2202 B] 375s Get:2 http://ftpmaster.internal/ubuntu noble/universe nanosv 1.2.4+git20190409.c1ae30c-6 (tar) [2895 kB] 375s Get:3 http://ftpmaster.internal/ubuntu noble/universe nanosv 1.2.4+git20190409.c1ae30c-6 (diff) [4472 B] 375s gpgv: Signature made Sun Oct 24 22:09:09 2021 UTC 375s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 375s gpgv: issuer "nilesh@debian.org" 375s gpgv: Can't check signature: No public key 375s dpkg-source: warning: cannot verify inline signature for ./nanosv_1.2.4+git20190409.c1ae30c-6.dsc: no acceptable signature found 375s autopkgtest [15:53:55]: testing package nanosv version 1.2.4+git20190409.c1ae30c-6 375s autopkgtest [15:53:55]: build not needed 392s autopkgtest [15:54:12]: test run-unit-test: preparing testbed 413s Reading package lists... 413s Building dependency tree... 413s Reading state information... 413s Starting pkgProblemResolver with broken count: 1 413s Starting 2 pkgProblemResolver with broken count: 1 413s Investigating (0) autopkgtest-satdep:ppc64el < none -> 0 @un puN Ib > 413s Broken autopkgtest-satdep:ppc64el Depends on nanosv:ppc64el < none | 1.2.4+git20190409.c1ae30c-6 @un uH > 413s Considering nanosv:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 413s Re-Instated libdeflate0:ppc64el 413s Re-Instated libhtscodecs2:ppc64el 413s Re-Instated libhts3:ppc64el 413s Re-Instated python3-pysam:ppc64el 413s Re-Instated python3-vcf:ppc64el 413s Re-Instated nanosv:ppc64el 413s Broken autopkgtest-satdep:ppc64el Depends on sambamba:ppc64el < none @un H > 413s Broken autopkgtest-satdep:ppc64el Depends on samtools:ppc64el < none | 1.19.2-1 @un uH > 413s Considering samtools:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 413s Re-Instated samtools:ppc64el 413s Broken autopkgtest-satdep:ppc64el Depends on bedtools:ppc64el < none | 2.31.1+dfsg-2 @un uH > 413s Considering bedtools:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 413s Re-Instated bedtools:ppc64el 413s Done 413s Some packages could not be installed. This may mean that you have 413s requested an impossible situation or if you are using the unstable 413s distribution that some required packages have not yet been created 413s or been moved out of Incoming. 413s The following information may help to resolve the situation: 413s 413s The following packages have unmet dependencies: 413s autopkgtest-satdep : Depends: sambamba but it is not installable 413s E: Unable to correct problems, you have held broken packages. 413s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 414s Reading package lists... 414s Building dependency tree... 414s Reading state information... 414s Starting pkgProblemResolver with broken count: 1 414s Starting 2 pkgProblemResolver with broken count: 1 414s Investigating (0) autopkgtest-satdep:ppc64el < none -> 0 @un puN Ib > 414s Broken autopkgtest-satdep:ppc64el Depends on nanosv:ppc64el < none | 1.2.4+git20190409.c1ae30c-6 @un uH > 414s Considering nanosv:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 414s Re-Instated libdeflate0:ppc64el 414s Re-Instated libhtscodecs2:ppc64el 414s Re-Instated libhts3:ppc64el 414s Re-Instated python3-pysam:ppc64el 414s Re-Instated python3-vcf:ppc64el 414s Re-Instated nanosv:ppc64el 414s Broken autopkgtest-satdep:ppc64el Depends on sambamba:ppc64el < none @un H > 414s Broken autopkgtest-satdep:ppc64el Depends on samtools:ppc64el < none | 1.19.2-1 @un uH > 414s Considering samtools:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 414s Re-Instated samtools:ppc64el 414s Broken autopkgtest-satdep:ppc64el Depends on bedtools:ppc64el < none | 2.31.1+dfsg-2 @un uH > 414s Considering bedtools:ppc64el 1 as a solution to autopkgtest-satdep:ppc64el 9998 414s Re-Instated bedtools:ppc64el 414s Done 414s Some packages could not be installed. This may mean that you have 414s requested an impossible situation or if you are using the unstable 414s distribution that some required packages have not yet been created 414s or been moved out of Incoming. 414s The following information may help to resolve the situation: 414s 414s The following packages have unmet dependencies: 414s autopkgtest-satdep : Depends: sambamba but it is not installable 414s E: Unable to correct problems, you have held broken packages. 414s autopkgtest: WARNING: Test dependencies are unsatisfiable - calling apt install on test deps directly for further data about failing dependencies in test logs 415s Reading package lists... 415s Building dependency tree... 415s Reading state information... 415s Package sambamba is not available, but is referred to by another package. 415s This may mean that the package is missing, has been obsoleted, or 415s is only available from another source 415s 415s E: Package 'sambamba' has no installation candidate 415s run-unit-test SKIP installation fails and skip-not-installable set 415s autopkgtest [15:54:35]: @@@@@@@@@@@@@@@@@@@@ summary 415s run-unit-test SKIP installation fails and skip-not-installable set 437s Creating nova instance adt-noble-ppc64el-nanosv-20240323-154740-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240321.img (UUID 024d6af5-fcba-4a84-85f9-01f41e1878d6)...