0s autopkgtest [02:31:28]: starting date and time: 2024-03-16 02:31:28+0000 0s autopkgtest [02:31:28]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [02:31:28]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1d9v1i7e/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gnuplot,src:at-spi2-core,src:glib2.0,src:gtk+3.0,src:libpng1.6,src:qtbase-opensource-src,src:wp2latex,src:wxwidgets3.2 --apt-upgrade murasaki --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=gnuplot/6.0.0+dfsg1-1ubuntu2 at-spi2-core/2.51.90-3 glib2.0/2.79.3-3ubuntu5 gtk+3.0/3.24.41-1.1ubuntu1 libpng1.6/1.6.43-3 qtbase-opensource-src/5.15.12+dfsg-3ubuntu5 wp2latex/4.4~ds-1build1 wxwidgets3.2/3.2.4+dfsg-3.1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-18.secgroup --name adt-noble-ppc64el-murasaki-20240316-023128-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 152s autopkgtest [02:34:00]: testbed dpkg architecture: ppc64el 152s autopkgtest [02:34:00]: testbed apt version: 2.7.12 152s autopkgtest [02:34:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup 153s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 154s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 154s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3632 kB] 155s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [49.6 kB] 155s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [469 kB] 155s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [628 kB] 155s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 155s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 155s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 155s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3743 kB] 156s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 156s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [46.2 kB] 156s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 159s Fetched 8704 kB in 3s (2627 kB/s) 159s Reading package lists... 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 162s Calculating upgrade... 162s The following packages will be REMOVED: 162s libglib2.0-0 162s The following NEW packages will be installed: 162s libglib2.0-0t64 xdg-user-dirs 162s The following packages will be upgraded: 162s gir1.2-glib-2.0 libglib2.0-data 163s 2 upgraded, 2 newly installed, 1 to remove and 0 not upgraded. 163s Need to get 2022 kB of archives. 163s After this operation, 204 kB of additional disk space will be used. 163s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gir1.2-glib-2.0 ppc64el 2.79.3-3ubuntu5 [182 kB] 163s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-0t64 ppc64el 2.79.3-3ubuntu5 [1773 kB] 163s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 163s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-user-dirs ppc64el 0.18-1 [20.0 kB] 164s Fetched 2022 kB in 1s (2549 kB/s) 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 164s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_ppc64el.deb ... 164s Unpacking gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 164s dpkg: libglib2.0-0:ppc64el: dependency problems, but removing anyway as you requested: 164s udisks2 depends on libglib2.0-0 (>= 2.77.0). 164s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 164s python3-gi depends on libglib2.0-0 (>= 2.77.0). 164s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 164s netplan.io depends on libglib2.0-0 (>= 2.70.0). 164s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 164s libxmlb2:ppc64el depends on libglib2.0-0 (>= 2.54.0). 164s libvolume-key1:ppc64el depends on libglib2.0-0 (>= 2.18.0). 164s libudisks2-0:ppc64el depends on libglib2.0-0 (>= 2.75.3). 164s libqrtr-glib0:ppc64el depends on libglib2.0-0 (>= 2.56). 164s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 164s libqmi-glib5:ppc64el depends on libglib2.0-0 (>= 2.54.0). 164s libpolkit-gobject-1-0:ppc64el depends on libglib2.0-0 (>= 2.38.0). 164s libpolkit-agent-1-0:ppc64el depends on libglib2.0-0 (>= 2.38.0). 164s libnetplan0:ppc64el depends on libglib2.0-0 (>= 2.75.3). 164s libmm-glib0:ppc64el depends on libglib2.0-0 (>= 2.62.0). 164s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 164s libmbim-glib4:ppc64el depends on libglib2.0-0 (>= 2.56). 164s libjson-glib-1.0-0:ppc64el depends on libglib2.0-0 (>= 2.75.3). 164s libjcat1:ppc64el depends on libglib2.0-0 (>= 2.75.3). 164s libgusb2:ppc64el depends on libglib2.0-0 (>= 2.75.3). 164s libgudev-1.0-0:ppc64el depends on libglib2.0-0 (>= 2.38.0). 164s libgirepository-1.0-1:ppc64el depends on libglib2.0-0 (>= 2.79.0). 164s libfwupd2:ppc64el depends on libglib2.0-0 (>= 2.79.0). 164s libblockdev3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 164s libblockdev-utils3:ppc64el depends on libglib2.0-0 (>= 2.75.3). 164s libblockdev-swap3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 164s libblockdev-part3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 164s libblockdev-nvme3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 164s libblockdev-mdraid3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 164s libblockdev-loop3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 164s libblockdev-fs3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 164s libblockdev-crypto3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 164s fwupd depends on libglib2.0-0 (>= 2.79.0). 164s bolt depends on libglib2.0-0 (>= 2.56.0). 164s 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 164s Removing libglib2.0-0:ppc64el (2.79.2-1~ubuntu1) ... 164s Selecting previously unselected package libglib2.0-0t64:ppc64el. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70070 files and directories currently installed.) 164s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_ppc64el.deb ... 164s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 164s removed '/var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm' 164s Unpacking libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 164s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 164s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 164s Selecting previously unselected package xdg-user-dirs. 164s Preparing to unpack .../xdg-user-dirs_0.18-1_ppc64el.deb ... 164s Unpacking xdg-user-dirs (0.18-1) ... 164s Setting up xdg-user-dirs (0.18-1) ... 164s Setting up libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 164s No schema files found: doing nothing. 164s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 164s Setting up gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) ... 164s Processing triggers for man-db (2.12.0-3) ... 165s Processing triggers for libc-bin (2.39-0ubuntu2) ... 165s Reading package lists... 166s Building dependency tree... 166s Reading state information...Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 166s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 166s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 166s 166s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 167s Reading package lists... 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 168s Calculating upgrade... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 171s autopkgtest [02:34:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 171s autopkgtest [02:34:19]: @@@@@@@@@@@@@@@@@@@@ apt-source murasaki 174s Get:1 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (dsc) [2787 B] 174s Get:2 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [3944 kB] 174s Get:3 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [308 kB] 174s Get:4 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (diff) [11.4 kB] 174s gpgv: Signature made Tue Dec 19 15:02:21 2023 UTC 174s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 174s gpgv: Can't check signature: No public key 174s dpkg-source: warning: cannot verify inline signature for ./murasaki_1.68.6-13build4.dsc: no acceptable signature found 175s autopkgtest [02:34:23]: testing package murasaki version 1.68.6-13build4 175s autopkgtest [02:34:23]: build not needed 178s autopkgtest [02:34:26]: test run-unit-test: preparing testbed 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Starting pkgProblemResolver with broken count: 0 180s Starting 2 pkgProblemResolver with broken count: 0 180s Done 180s The following additional packages will be installed: 180s adwaita-icon-theme aglfn at-spi2-common autoconf automake autotools-dev 180s cpp-13-powerpc64le-linux-gnu dconf-gsettings-backend dconf-service 180s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-13 180s gcc-13-powerpc64le-linux-gnu gfortran-13 gfortran-13-powerpc64le-linux-gnu 180s gnuplot gnuplot-data gnuplot-qt gtk-update-icon-cache hicolor-icon-theme 180s humanity-icon-theme icu-devtools imagemagick imagemagick-6-common 180s imagemagick-6.q16 libamd-comgr2 libamdhip64-5 libasan8 libatk-bridge2.0-0t64 180s libatk1.0-0t64 libatomic1 libatspi2.0-0t64 libavahi-client3 180s libavahi-common-data libavahi-common3 libbio-perl-perl libblas3 180s libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-filesystem-dev 180s libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev 180s libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-regex-dev 180s libboost-regex1.83-dev libboost-regex1.83.0 libboost-system1.83-dev 180s libboost-system1.83.0 libboost1.83-dev libc-dev-bin libc6-dev 180s libcairo-gobject2 libcairo2 libcc1-0 libcolord2 libcrypt-dev libcrypto++-dev 180s libcrypto++8t64 libcups2 libdata-stag-perl libdatrie1 libdav1d7 libdconf1 180s libde265-0 libdeflate0 libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 180s libdrm-radeon1 libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev 180s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 180s libfabric1 libfftw3-double3 libfontconfig1 libgbm1 libgcc-13-dev libgd3 180s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5 180s libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 180s libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b 180s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhsa-runtime64-1 180s libhsakmt1 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libice6 180s libicu-dev libinput-bin libinput10 libio-string-perl libisl23 libitm1 180s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 180s liblcms2-2 liblerc4 libllvm17 liblqr-1-0 liblsan0 libltdl-dev libltdl7 180s liblua5.4-0 libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmd4c0 libmpc3 180s libmtdev1t64 libmunge2 libnl-3-dev libnl-route-3-dev libnotify4 libnsl-dev 180s libnuma-dev libopenjp2-7 libopenmpi-dev libopenmpi3 libpango-1.0-0 180s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 180s libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpmix-dev libpmix2 180s libpng16-16t64 libpstreams-dev libqt5core5t64 libqt5dbus5t64 libqt5gui5t64 180s libqt5network5t64 libqt5printsupport5t64 libqt5svg5 libqt5widgets5t64 180s libquadmath0 libraw23 librdmacm1t64 libsharpyuv0 libsm6 libstdc++-13-dev 180s libtcl8.6 libterm-readkey-perl libtext-wrapper-perl libthai-data libthai0 180s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libucx0 libvulkan1 180s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 180s libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 180s libwxbase3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 180s libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 180s libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 180s libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 180s libxcb-xkb1 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 180s libxinerama1 libxkbcommon-x11-0 libxnvctrl0 libxpm4 libxrandr2 libxrender1 180s libxshmfence1 libxss1 libxt6 libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki 180s murasaki-common murasaki-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common 180s r-base-core r-cran-bitops r-cran-catools r-cran-gdata r-cran-gplots 180s r-cran-gtools r-cran-kernsmooth r-cran-mass r-cran-rocr rpcsvc-proto 180s ubuntu-mono unzip x11-common xdg-utils zip zlib1g-dev 180s Suggested packages: 180s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-13-locales 180s cpp-13-doc gcc-13-doc gfortran-13-doc libcoarrays-dev gnuplot-doc 180s imagemagick-6-doc autotrace cups-bsd | lpr | lprng enscript ffmpeg gimp 180s grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils 180s texlive-base-bin transfig libraw-bin bioperl libxml-sax-expatxs-perl 180s libboost1.83-doc libboost-chrono1.83-dev libboost-container1.83-dev 180s libboost-context1.83-dev libboost-contract1.83-dev 180s libboost-coroutine1.83-dev libboost-date-time1.83-dev 180s libboost-exception1.83-dev libboost-fiber1.83-dev 180s libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev 180s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 180s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 180s libboost-numpy1.83-dev libboost-program-options1.83-dev 180s libboost-python1.83-dev libboost-random1.83-dev 180s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 180s libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev 180s libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev 180s libboost1.83-tools-dev libmpfrc++-dev libntl-dev glibc-doc manpages-dev 180s colord cups-common libfftw3-bin libfftw3-dev libgd-tools gvfs 180s libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc 180s libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e 180s libheif-plugin-svtenc icu-doc libjs-jquery-ui-docs liblcms2-utils 180s libtool-doc libmagickcore-6.q16-7-extra notification-daemon openmpi-doc 180s qgnomeplatform-qt5 qt5-image-formats-plugins libstdc++-13-doc tcl8.6 tk8.6 180s libwacom-bin m4-doc opencl-icd gfortran | fortran-compiler elpa-ess 180s r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rpart r-cran-knitr 180s r-cran-rmarkdown 180s Recommended packages: 180s librsvg2-common libmagickcore-6.q16-7-extra ghostscript netpbm at-spi2-core 180s bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl 180s libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl 180s libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl 180s libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl 180s libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl 180s libset-scalar-perl libsoap-lite-perl libsort-naturally-perl 180s libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl 180s libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl 180s libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl 180s libxml-writer-perl libxml-libxml-perl libwww-perl manpages manpages-dev 180s libc-devtools perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl 180s libxml-libxslt-perl libmldbm-perl libxml-perl libgdk-pixbuf2.0-bin 180s libgl1-amber-dri libgtk-3-bin libheif-plugin-aomenc libheif-plugin-x265 180s javascript-common libtool fonts-urw-base35 libcoarrays-openmpi-dev 180s qttranslations5-l10n qt5-gtk-platformtheme qtwayland5 mesa-vulkan-drivers 180s | vulkan-icd r-recommended r-base-dev r-doc-html r-cran-testthat 180s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 180s x11-xserver-utils 180s The following packages will be REMOVED: 180s libpng16-16 180s The following NEW packages will be installed: 180s adwaita-icon-theme aglfn at-spi2-common autoconf automake autopkgtest-satdep 180s autotools-dev cpp-13-powerpc64le-linux-gnu dconf-gsettings-backend 180s dconf-service fontconfig fontconfig-config fonts-dejavu-core 180s fonts-dejavu-mono gcc-13 gcc-13-powerpc64le-linux-gnu gfortran-13 180s gfortran-13-powerpc64le-linux-gnu gnuplot gnuplot-data gnuplot-qt 180s gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools 180s imagemagick imagemagick-6-common imagemagick-6.q16 libamd-comgr2 180s libamdhip64-5 libasan8 libatk-bridge2.0-0t64 libatk1.0-0t64 libatomic1 180s libatspi2.0-0t64 libavahi-client3 libavahi-common-data libavahi-common3 180s libbio-perl-perl libblas3 libboost-atomic1.83-dev libboost-atomic1.83.0 180s libboost-filesystem-dev libboost-filesystem1.83-dev 180s libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev 180s libboost-iostreams1.83.0 libboost-regex-dev libboost-regex1.83-dev 180s libboost-regex1.83.0 libboost-system1.83-dev libboost-system1.83.0 180s libboost1.83-dev libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcc1-0 180s libcolord2 libcrypt-dev libcrypto++-dev libcrypto++8t64 libcups2 180s libdata-stag-perl libdatrie1 libdav1d7 libdconf1 libde265-0 libdeflate0 180s libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 180s libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev 180s libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7 180s libfabric1 libfftw3-double3 libfontconfig1 libgbm1 libgcc-13-dev libgd3 180s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5 180s libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1 180s libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b 180s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libhsa-runtime64-1 180s libhsakmt1 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libice6 180s libicu-dev libinput-bin libinput10 libio-string-perl libisl23 libitm1 180s libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 180s liblcms2-2 liblerc4 libllvm17 liblqr-1-0 liblsan0 libltdl-dev libltdl7 180s liblua5.4-0 libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmd4c0 libmpc3 180s libmtdev1t64 libmunge2 libnl-3-dev libnl-route-3-dev libnotify4 libnsl-dev 180s libnuma-dev libopenjp2-7 libopenmpi-dev libopenmpi3 libpango-1.0-0 180s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0 180s libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpmix-dev libpmix2 180s libpng16-16t64 libpstreams-dev libqt5core5t64 libqt5dbus5t64 libqt5gui5t64 180s libqt5network5t64 libqt5printsupport5t64 libqt5svg5 libqt5widgets5t64 180s libquadmath0 libraw23 librdmacm1t64 libsharpyuv0 libsm6 libstdc++-13-dev 180s libtcl8.6 libterm-readkey-perl libtext-wrapper-perl libthai-data libthai0 180s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libucx0 libvulkan1 180s libwacom-common libwacom9 libwayland-client0 libwayland-cursor0 180s libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 180s libwxbase3.2-1t64 libwxgtk3.2-1t64 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 180s libxcb-glx0 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 180s libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 180s libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 180s libxcb-xkb1 libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 180s libxinerama1 libxkbcommon-x11-0 libxnvctrl0 libxpm4 libxrandr2 libxrender1 180s libxshmfence1 libxss1 libxt6 libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki 180s murasaki-common murasaki-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common 180s r-base-core r-cran-bitops r-cran-catools r-cran-gdata r-cran-gplots 180s r-cran-gtools r-cran-kernsmooth r-cran-mass r-cran-rocr rpcsvc-proto 180s ubuntu-mono unzip x11-common xdg-utils zip zlib1g-dev 180s 0 upgraded, 256 newly installed, 1 to remove and 0 not upgraded. 180s Need to get 251 MB/251 MB of archives. 180s After this operation, 1119 MB of additional disk space will be used. 180s Get:1 /tmp/autopkgtest.oqrGR8/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [796 B] 180s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpng16-16t64 ppc64el 1.6.43-3 [242 kB] 181s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 181s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libfftw3-double3 ppc64el 3.3.10-1ubuntu1 [440 kB] 181s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 181s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 181s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 181s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 182s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 182s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdav1d7 ppc64el 1.4.0-1 [461 kB] 182s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el libheif-plugin-dav1d ppc64el 1.17.6-1ubuntu1 [11.3 kB] 182s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el libde265-0 ppc64el 1.0.15-1 [329 kB] 182s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el libheif-plugin-libde265 ppc64el 1.17.6-1ubuntu1 [9566 B] 182s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el libheif1 ppc64el 1.17.6-1ubuntu1 [381 kB] 182s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 182s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 182s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 182s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] 182s Get:19 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblqr-1-0 ppc64el 0.4.2-2.1 [37.5 kB] 182s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libltdl7 ppc64el 2.4.7-7 [48.0 kB] 182s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB] 182s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libraw23 ppc64el 0.21.2-2 [512 kB] 182s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 182s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 182s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 182s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 182s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB] 182s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB] 182s Get:29 http://ftpmaster.internal/ubuntu noble/universe ppc64el imagemagick-6-common all 8:6.9.12.98+dfsg1-5 [69.2 kB] 182s Get:30 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmagickcore-6.q16-7 ppc64el 8:6.9.12.98+dfsg1-5 [2204 kB] 183s Get:31 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmagickwand-6.q16-7 ppc64el 8:6.9.12.98+dfsg1-5 [290 kB] 183s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 183s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdk-pixbuf-2.0-0 ppc64el 2.42.10+dfsg-3 [186 kB] 183s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gtk-update-icon-cache ppc64el 3.24.41-1.1ubuntu1 [53.4 kB] 183s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el hicolor-icon-theme all 0.17-2 [9976 B] 183s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el humanity-icon-theme all 0.6.16 [1282 kB] 183s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-mono all 24.04-0ubuntu1 [151 kB] 183s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el adwaita-icon-theme all 46~rc-1 [723 kB] 183s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el at-spi2-common all 2.51.90-3 [8222 B] 183s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el m4 ppc64el 1.4.19-4 [275 kB] 183s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el autoconf all 2.71-3 [339 kB] 183s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el autotools-dev all 20220109.1 [44.9 kB] 183s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el automake all 1:1.16.5-1.3ubuntu1 [558 kB] 183s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3 [864 kB] 183s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1 [61.2 kB] 183s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [10.7 MB] 184s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el libdconf1 ppc64el 0.40.0-4 [43.0 kB] 184s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el dconf-service ppc64el 0.40.0-4 [31.0 kB] 184s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el dconf-gsettings-backend ppc64el 0.40.0-4 [25.3 kB] 184s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1ubuntu1 [192 kB] 184s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240303-1ubuntu1 [48.1 kB] 184s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240303-1ubuntu1 [32.4 kB] 184s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240303-1ubuntu1 [10.7 kB] 184s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240303-1ubuntu1 [2973 kB] 184s Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240303-1ubuntu1 [1325 kB] 184s Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240303-1ubuntu1 [2734 kB] 184s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240303-1ubuntu1 [1194 kB] 184s Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240303-1ubuntu1 [158 kB] 184s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-17ubuntu2 [1581 kB] 184s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [20.6 MB] 185s Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-17ubuntu2 [477 kB] 185s Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 185s Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran-13-dev ppc64el 13.2.0-17ubuntu2 [604 kB] 185s Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu2 [21.3 kB] 185s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el linux-libc-dev ppc64el 6.8.0-11.11 [1585 kB] 185s Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB] 185s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1build1 [262 kB] 185s Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3 [79.2 kB] 185s Get:69 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB] 185s Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu2 [2102 kB] 185s Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [11.2 MB] 186s Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13 ppc64el 13.2.0-17ubuntu2 [10.3 kB] 186s Get:73 http://ftpmaster.internal/ubuntu noble/universe ppc64el aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB] 186s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el gnuplot-data all 6.0.0+dfsg1-1ubuntu2 [75.3 kB] 186s Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB] 186s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] 186s Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] 186s Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 186s Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB] 186s Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el libxpm4 ppc64el 1:3.5.17-1 [48.6 kB] 186s Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el libgd3 ppc64el 2.3.3-9ubuntu1 [155 kB] 186s Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el liblua5.4-0 ppc64el 5.4.6-3 [216 kB] 186s Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 186s Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 186s Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2 [158 kB] 186s Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3 [25.1 kB] 186s Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2 [21.4 kB] 186s Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.51.0+ds-4 [266 kB] 186s Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.51.0+ds-4 [49.5 kB] 186s Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.51.0+ds-4 [31.2 kB] 186s Get:91 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdouble-conversion3 ppc64el 3.3.0-1 [43.3 kB] 186s Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu1 [245 kB] 186s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libqt5core5t64 ppc64el 5.15.12+dfsg-3ubuntu5 [2189 kB] 186s Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el libglvnd0 ppc64el 1.7.0-1 [84.0 kB] 186s Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el libwayland-server0 ppc64el 1.22.0-2.1 [39.7 kB] 186s Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-randr0 ppc64el 1.15-1 [18.9 kB] 186s Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el libgbm1 ppc64el 24.0.1-1ubuntu1 [44.1 kB] 186s Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el libglapi-mesa ppc64el 24.0.1-1ubuntu1 [41.8 kB] 186s Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el libwayland-client0 ppc64el 1.22.0-2.1 [29.4 kB] 186s Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libx11-xcb1 ppc64el 2:1.8.7-1 [7866 B] 186s Get:101 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-dri2-0 ppc64el 1.15-1 [7444 B] 186s Get:102 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-dri3-0 ppc64el 1.15-1 [7392 B] 186s Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-present0 ppc64el 1.15-1 [5814 B] 187s Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-sync1 ppc64el 1.15-1 [9720 B] 187s Get:105 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-xfixes0 ppc64el 1.15-1 [10.6 kB] 187s Get:106 http://ftpmaster.internal/ubuntu noble/main ppc64el libxshmfence1 ppc64el 1.3-1build4 [5566 B] 187s Get:107 http://ftpmaster.internal/ubuntu noble/main ppc64el libegl-mesa0 ppc64el 24.0.1-1ubuntu1 [117 kB] 187s Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el libegl1 ppc64el 1.7.0-1 [33.2 kB] 187s Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-glx0 ppc64el 1.15-1 [26.2 kB] 187s Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el libxfixes3 ppc64el 1:6.0.0-2 [11.6 kB] 187s Get:111 http://ftpmaster.internal/ubuntu noble/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1build3 [11.8 kB] 187s Get:112 http://ftpmaster.internal/ubuntu noble/main ppc64el libvulkan1 ppc64el 1.3.275.0-1 [176 kB] 187s Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-amdgpu1 ppc64el 2.4.120-2 [24.5 kB] 187s Get:114 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-nouveau2 ppc64el 2.4.120-2 [21.2 kB] 187s Get:115 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-radeon1 ppc64el 2.4.120-2 [30.6 kB] 187s Get:116 http://ftpmaster.internal/ubuntu noble/main ppc64el libllvm17 ppc64el 1:17.0.6-5build1 [27.3 MB] 190s Get:117 http://ftpmaster.internal/ubuntu noble/main ppc64el libgl1-mesa-dri ppc64el 24.0.1-1ubuntu1 [5885 kB] 190s Get:118 http://ftpmaster.internal/ubuntu noble/main ppc64el libglx-mesa0 ppc64el 24.0.1-1ubuntu1 [160 kB] 190s Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libglx0 ppc64el 1.7.0-1 [42.1 kB] 190s Get:120 http://ftpmaster.internal/ubuntu noble/main ppc64el libgl1 ppc64el 1.7.0-1 [108 kB] 190s Get:121 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 190s Get:122 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build2 [49.3 kB] 190s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmtdev1t64 ppc64el 1.1.6-1.1 [18.8 kB] 190s Get:124 http://ftpmaster.internal/ubuntu noble/main ppc64el libwacom-common all 2.10.0-1 [63.3 kB] 190s Get:125 http://ftpmaster.internal/ubuntu noble/main ppc64el libwacom9 ppc64el 2.10.0-1 [29.0 kB] 190s Get:126 http://ftpmaster.internal/ubuntu noble/main ppc64el libinput-bin ppc64el 1.25.0-1 [22.6 kB] 190s Get:127 http://ftpmaster.internal/ubuntu noble/main ppc64el libinput10 ppc64el 1.25.0-1 [163 kB] 190s Get:128 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmd4c0 ppc64el 0.4.8-1 [53.3 kB] 190s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libqt5dbus5t64 ppc64el 5.15.12+dfsg-3ubuntu5 [246 kB] 190s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libqt5network5t64 ppc64el 5.15.12+dfsg-3ubuntu5 [813 kB] 190s Get:131 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build2 [18.5 kB] 190s Get:132 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-icccm4 ppc64el 0.4.1-1.1build2 [11.8 kB] 190s Get:133 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-util1 ppc64el 0.4.0-1build2 [11.5 kB] 190s Get:134 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-image0 ppc64el 0.4.0-2 [12.5 kB] 190s Get:135 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-keysyms1 ppc64el 0.4.0-1build3 [9152 B] 190s Get:136 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render-util0 ppc64el 0.3.9-1build3 [11.2 kB] 190s Get:137 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shape0 ppc64el 1.15-1 [6254 B] 190s Get:138 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-xinerama0 ppc64el 1.15-1 [5484 B] 190s Get:139 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-xinput0 ppc64el 1.15-1 [37.1 kB] 190s Get:140 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-xkb1 ppc64el 1.15-1 [36.0 kB] 190s Get:141 http://ftpmaster.internal/ubuntu noble/main ppc64el libxkbcommon-x11-0 ppc64el 1.6.0-1 [15.3 kB] 190s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libqt5gui5t64 ppc64el 5.15.12+dfsg-3ubuntu5 [4132 kB] 190s Get:143 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-common-data ppc64el 0.8-13ubuntu2 [29.5 kB] 190s Get:144 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-common3 ppc64el 0.8-13ubuntu2 [25.8 kB] 190s Get:145 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-client3 ppc64el 0.8-13ubuntu2 [30.6 kB] 190s Get:146 http://ftpmaster.internal/ubuntu noble/main ppc64el libcups2 ppc64el 2.4.6-0ubuntu3 [344 kB] 190s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libqt5widgets5t64 ppc64el 5.15.12+dfsg-3ubuntu5 [2805 kB] 191s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libqt5printsupport5t64 ppc64el 5.15.12+dfsg-3ubuntu5 [224 kB] 191s Get:149 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqt5svg5 ppc64el 5.15.12-1 [196 kB] 191s Get:150 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu1 [228 kB] 191s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libwxbase3.2-1t64 ppc64el 3.2.4+dfsg-3.1build1 [1019 kB] 191s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libatk1.0-0t64 ppc64el 2.51.90-3 [60.0 kB] 191s Get:153 http://ftpmaster.internal/ubuntu noble/main ppc64el libxi6 ppc64el 2:1.8.1-1 [37.9 kB] 191s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libatspi2.0-0t64 ppc64el 2.51.90-3 [98.1 kB] 191s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libatk-bridge2.0-0t64 ppc64el 2.51.90-3 [78.3 kB] 191s Get:156 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo-gobject2 ppc64el 1.18.0-1 [127 kB] 191s Get:157 http://ftpmaster.internal/ubuntu noble/main ppc64el libcolord2 ppc64el 1.4.7-1 [164 kB] 191s Get:158 http://ftpmaster.internal/ubuntu noble/main ppc64el libepoxy0 ppc64el 1.5.10-1 [247 kB] 191s Get:159 http://ftpmaster.internal/ubuntu noble/main ppc64el libwayland-cursor0 ppc64el 1.22.0-2.1 [11.4 kB] 191s Get:160 http://ftpmaster.internal/ubuntu noble/main ppc64el libwayland-egl1 ppc64el 1.22.0-2.1 [5626 B] 191s Get:161 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcomposite1 ppc64el 1:0.4.5-1build2 [7400 B] 191s Get:162 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcursor1 ppc64el 1:1.2.1-1 [26.9 kB] 191s Get:163 http://ftpmaster.internal/ubuntu noble/main ppc64el libxdamage1 ppc64el 1:1.1.6-1 [6320 B] 191s Get:164 http://ftpmaster.internal/ubuntu noble/main ppc64el libxinerama1 ppc64el 2:1.1.4-3 [7658 B] 191s Get:165 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrandr2 ppc64el 2:1.5.2-2 [22.7 kB] 191s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgtk-3-common all 3.24.41-1.1ubuntu1 [1201 kB] 191s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgtk-3-0t64 ppc64el 3.24.41-1.1ubuntu1 [3362 kB] 191s Get:168 http://ftpmaster.internal/ubuntu noble/main ppc64el libnotify4 ppc64el 0.8.3-1 [27.6 kB] 191s Get:169 http://ftpmaster.internal/ubuntu noble/main ppc64el libxtst6 ppc64el 2:1.2.3-1.1 [15.4 kB] 191s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libwxgtk3.2-1t64 ppc64el 3.2.4+dfsg-3.1build1 [5165 kB] 191s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el gnuplot-qt ppc64el 6.0.0+dfsg1-1ubuntu2 [1500 kB] 191s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el gnuplot all 6.0.0+dfsg1-1ubuntu2 [3570 B] 191s Get:173 http://ftpmaster.internal/ubuntu noble/main ppc64el icu-devtools ppc64el 74.2-1ubuntu1 [246 kB] 191s Get:174 http://ftpmaster.internal/ubuntu noble/universe ppc64el imagemagick-6.q16 ppc64el 8:6.9.12.98+dfsg1-5 [254 kB] 192s Get:175 http://ftpmaster.internal/ubuntu noble/universe ppc64el imagemagick ppc64el 8:6.9.12.98+dfsg1-5 [14.2 kB] 192s Get:176 http://ftpmaster.internal/ubuntu noble/universe ppc64el libamd-comgr2 ppc64el 6.0+git20231212.4510c28+dfsg-3 [15.3 MB] 192s Get:177 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhsakmt1 ppc64el 5.7.0-1 [76.5 kB] 192s Get:178 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhsa-runtime64-1 ppc64el 5.7.1-1 [330 kB] 192s Get:179 http://ftpmaster.internal/ubuntu noble/universe ppc64el libamdhip64-5 ppc64el 5.2.3-12 [5004 kB] 193s Get:180 http://ftpmaster.internal/ubuntu noble/main ppc64el libio-string-perl all 1.08-4 [11.1 kB] 193s Get:181 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdata-stag-perl all 0.14-3 [372 kB] 193s Get:182 http://ftpmaster.internal/ubuntu noble/universe ppc64el libbio-perl-perl all 1.7.8-1 [2580 kB] 193s Get:183 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 193s Get:184 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-17ubuntu2 [2445 kB] 193s Get:185 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost1.83-dev ppc64el 1.83.0-2ubuntu1 [15.3 MB] 194s Get:186 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-atomic1.83.0 ppc64el 1.83.0-2ubuntu1 [316 kB] 194s Get:187 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-atomic1.83-dev ppc64el 1.83.0-2ubuntu1 [312 kB] 194s Get:188 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-filesystem1.83.0 ppc64el 1.83.0-2ubuntu1 [373 kB] 194s Get:189 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-system1.83.0 ppc64el 1.83.0-2ubuntu1 [312 kB] 194s Get:190 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-system1.83-dev ppc64el 1.83.0-2ubuntu1 [308 kB] 194s Get:191 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-filesystem1.83-dev ppc64el 1.83.0-2ubuntu1 [402 kB] 194s Get:192 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-filesystem-dev ppc64el 1.83.0.1ubuntu2 [4098 B] 194s Get:193 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-regex1.83.0 ppc64el 1.83.0-2ubuntu1 [441 kB] 194s Get:194 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu-dev ppc64el 74.2-1ubuntu1 [12.5 MB] 195s Get:195 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-regex1.83-dev ppc64el 1.83.0-2ubuntu1 [475 kB] 195s Get:196 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-iostreams1.83.0 ppc64el 1.83.0-2ubuntu1 [340 kB] 195s Get:197 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-iostreams1.83-dev ppc64el 1.83.0-2ubuntu1 [351 kB] 195s Get:198 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-iostreams-dev ppc64el 1.83.0.1ubuntu2 [4050 B] 195s Get:199 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-regex-dev ppc64el 1.83.0.1ubuntu2 [4326 B] 195s Get:200 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcrypto++8t64 ppc64el 8.9.0-1.1 [1289 kB] 195s Get:201 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcrypto++-dev ppc64el 8.9.0-1.1 [2238 kB] 195s Get:202 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-2.1-7 ppc64el 2.1.12-stable-9 [169 kB] 195s Get:203 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-extra-2.1-7 ppc64el 2.1.12-stable-9 [75.2 kB] 195s Get:204 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-pthreads-2.1-7 ppc64el 2.1.12-stable-9 [7844 B] 195s Get:205 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-openssl-2.1-7 ppc64el 2.1.12-stable-9 [16.8 kB] 195s Get:206 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-dev ppc64el 2.1.12-stable-9 [329 kB] 195s Get:207 http://ftpmaster.internal/ubuntu noble/main ppc64el librdmacm1t64 ppc64el 50.0-2 [80.9 kB] 196s Get:208 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfabric1 ppc64el 1.17.0-3 [677 kB] 196s Get:209 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhwloc15 ppc64el 2.10.0-1 [216 kB] 196s Get:210 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 196s Get:211 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 196s Get:212 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 196s Get:213 http://ftpmaster.internal/ubuntu noble/main ppc64el libltdl-dev ppc64el 2.4.7-7 [178 kB] 196s Get:214 http://ftpmaster.internal/ubuntu noble/main ppc64el libnl-3-dev ppc64el 3.7.0-0.3 [130 kB] 196s Get:215 http://ftpmaster.internal/ubuntu noble/main ppc64el libnl-route-3-dev ppc64el 3.7.0-0.3 [258 kB] 196s Get:216 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmunge2 ppc64el 0.5.15-3ubuntu1 [17.6 kB] 196s Get:217 http://ftpmaster.internal/ubuntu noble/main ppc64el libpciaccess0 ppc64el 0.17-3 [20.8 kB] 196s Get:218 http://ftpmaster.internal/ubuntu noble/main ppc64el libxnvctrl0 ppc64el 510.47.03-0ubuntu1 [11.7 kB] 196s Get:219 http://ftpmaster.internal/ubuntu noble/universe ppc64el ocl-icd-libopencl1 ppc64el 2.3.2-1 [41.7 kB] 196s Get:220 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhwloc-plugins ppc64el 2.10.0-1 [17.3 kB] 196s Get:221 http://ftpmaster.internal/ubuntu noble/universe ppc64el libpmix2 ppc64el 5.0.1-4 [750 kB] 196s Get:222 http://ftpmaster.internal/ubuntu noble/universe ppc64el libucx0 ppc64el 1.16.0+ds-4 [1203 kB] 196s Get:223 http://ftpmaster.internal/ubuntu noble/universe ppc64el libopenmpi3 ppc64el 4.1.6-5ubuntu1 [3404 kB] 196s Get:224 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29 [13.5 kB] 196s Get:225 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29 [8710 B] 196s Get:226 http://ftpmaster.internal/ubuntu noble/main ppc64el libnuma-dev ppc64el 2.0.18-1 [45.6 kB] 196s Get:227 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhwloc-dev ppc64el 2.10.0-1 [316 kB] 196s Get:228 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3ubuntu1 [902 kB] 196s Get:229 http://ftpmaster.internal/ubuntu noble/universe ppc64el libpmix-dev ppc64el 5.0.1-4 [4129 kB] 197s Get:230 http://ftpmaster.internal/ubuntu noble/universe ppc64el libpstreams-dev all 1.0.3-1 [115 kB] 197s Get:231 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB] 197s Get:232 http://ftpmaster.internal/ubuntu noble/main ppc64el libterm-readkey-perl ppc64el 2.38-2build2 [24.7 kB] 197s Get:233 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtext-wrapper-perl all 1.05-4 [9820 B] 197s Get:234 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB] 197s Get:235 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B] 197s Get:236 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB] 197s Get:237 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6 ppc64el 1:1.2.1-1.1 [198 kB] 197s Get:238 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13 [192 kB] 197s Get:239 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu3 [192 kB] 197s Get:240 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 197s Get:241 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-core ppc64el 4.3.2-1build1 [27.4 MB] 198s Get:242 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-gtools ppc64el 3.9.5-1 [340 kB] 198s Get:243 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bitops ppc64el 1.0-7-1 [30.0 kB] 198s Get:244 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-catools ppc64el 1.18.2-1 [209 kB] 198s Get:245 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-mass ppc64el 7.3-60.0.1-1 [1126 kB] 198s Get:246 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-kernsmooth ppc64el 2.23-22-1 [94.6 kB] 198s Get:247 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-gdata all 3.0.0-1 [483 kB] 198s Get:248 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-gplots all 3.1.3.1-1 [589 kB] 198s Get:249 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rocr all 1.0-11-2build1 [446 kB] 198s Get:250 http://ftpmaster.internal/ubuntu noble/universe ppc64el murasaki-common all 1.68.6-13build4 [146 kB] 198s Get:251 http://ftpmaster.internal/ubuntu noble/universe ppc64el murasaki ppc64el 1.68.6-13build4 [709 kB] 198s Get:252 http://ftpmaster.internal/ubuntu noble/universe ppc64el murasaki-mpi ppc64el 1.68.6-13build4 [842 kB] 198s Get:253 http://ftpmaster.internal/ubuntu noble/universe ppc64el openmpi-common all 4.1.6-5ubuntu1 [178 kB] 198s Get:254 http://ftpmaster.internal/ubuntu noble/universe ppc64el openmpi-bin ppc64el 4.1.6-5ubuntu1 [129 kB] 198s Get:255 http://ftpmaster.internal/ubuntu noble/main ppc64el libibverbs-dev ppc64el 50.0-2 [743 kB] 198s Get:256 http://ftpmaster.internal/ubuntu noble/universe ppc64el libopenmpi-dev ppc64el 4.1.6-5ubuntu1 [1714 kB] 199s Preconfiguring packages ... 199s Fetched 251 MB in 18s (14.2 MB/s) 199s dpkg: libpng16-16:ppc64el: dependency problems, but removing anyway as you requested: 199s libplymouth5:ppc64el depends on libpng16-16 (>= 1.6.2). 199s libfreetype6:ppc64el depends on libpng16-16 (>= 1.6.2-1). 199s 199s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70109 files and directories currently installed.) 199s Removing libpng16-16:ppc64el (1.6.43-1) ... 199s Selecting previously unselected package libpng16-16t64:ppc64el. 199s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70099 files and directories currently installed.) 199s Preparing to unpack .../000-libpng16-16t64_1.6.43-3_ppc64el.deb ... 199s Unpacking libpng16-16t64:ppc64el (1.6.43-3) ... 199s Selecting previously unselected package libgomp1:ppc64el. 199s Preparing to unpack .../001-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 199s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 199s Selecting previously unselected package libfftw3-double3:ppc64el. 199s Preparing to unpack .../002-libfftw3-double3_3.3.10-1ubuntu1_ppc64el.deb ... 199s Unpacking libfftw3-double3:ppc64el (3.3.10-1ubuntu1) ... 199s Selecting previously unselected package fonts-dejavu-mono. 199s Preparing to unpack .../003-fonts-dejavu-mono_2.37-8_all.deb ... 199s Unpacking fonts-dejavu-mono (2.37-8) ... 199s Selecting previously unselected package fonts-dejavu-core. 199s Preparing to unpack .../004-fonts-dejavu-core_2.37-8_all.deb ... 199s Unpacking fonts-dejavu-core (2.37-8) ... 199s Selecting previously unselected package fontconfig-config. 199s Preparing to unpack .../005-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 199s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 199s Selecting previously unselected package libfontconfig1:ppc64el. 199s Preparing to unpack .../006-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 199s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 199s Selecting previously unselected package libsharpyuv0:ppc64el. 199s Preparing to unpack .../007-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 199s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 199s Selecting previously unselected package libdav1d7:ppc64el. 199s Preparing to unpack .../008-libdav1d7_1.4.0-1_ppc64el.deb ... 199s Unpacking libdav1d7:ppc64el (1.4.0-1) ... 199s Selecting previously unselected package libheif-plugin-dav1d:ppc64el. 199s Preparing to unpack .../009-libheif-plugin-dav1d_1.17.6-1ubuntu1_ppc64el.deb ... 199s Unpacking libheif-plugin-dav1d:ppc64el (1.17.6-1ubuntu1) ... 199s Selecting previously unselected package libde265-0:ppc64el. 199s Preparing to unpack .../010-libde265-0_1.0.15-1_ppc64el.deb ... 199s Unpacking libde265-0:ppc64el (1.0.15-1) ... 199s Selecting previously unselected package libheif-plugin-libde265:ppc64el. 199s Preparing to unpack .../011-libheif-plugin-libde265_1.17.6-1ubuntu1_ppc64el.deb ... 199s Unpacking libheif-plugin-libde265:ppc64el (1.17.6-1ubuntu1) ... 199s Selecting previously unselected package libheif1:ppc64el. 199s Preparing to unpack .../012-libheif1_1.17.6-1ubuntu1_ppc64el.deb ... 199s Unpacking libheif1:ppc64el (1.17.6-1ubuntu1) ... 199s Selecting previously unselected package libjbig0:ppc64el. 199s Preparing to unpack .../013-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 199s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 199s Selecting previously unselected package libjpeg-turbo8:ppc64el. 199s Preparing to unpack .../014-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 199s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 199s Selecting previously unselected package libjpeg8:ppc64el. 199s Preparing to unpack .../015-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 199s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 199s Selecting previously unselected package liblcms2-2:ppc64el. 199s Preparing to unpack .../016-liblcms2-2_2.14-2_ppc64el.deb ... 199s Unpacking liblcms2-2:ppc64el (2.14-2) ... 199s Selecting previously unselected package liblqr-1-0:ppc64el. 199s Preparing to unpack .../017-liblqr-1-0_0.4.2-2.1_ppc64el.deb ... 199s Unpacking liblqr-1-0:ppc64el (0.4.2-2.1) ... 199s Selecting previously unselected package libltdl7:ppc64el. 199s Preparing to unpack .../018-libltdl7_2.4.7-7_ppc64el.deb ... 199s Unpacking libltdl7:ppc64el (2.4.7-7) ... 199s Selecting previously unselected package libopenjp2-7:ppc64el. 199s Preparing to unpack .../019-libopenjp2-7_2.5.0-2_ppc64el.deb ... 199s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ... 199s Selecting previously unselected package libraw23:ppc64el. 199s Preparing to unpack .../020-libraw23_0.21.2-2_ppc64el.deb ... 199s Unpacking libraw23:ppc64el (0.21.2-2) ... 199s Selecting previously unselected package libdeflate0:ppc64el. 199s Preparing to unpack .../021-libdeflate0_1.19-1_ppc64el.deb ... 199s Unpacking libdeflate0:ppc64el (1.19-1) ... 199s Selecting previously unselected package liblerc4:ppc64el. 199s Preparing to unpack .../022-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 199s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 199s Selecting previously unselected package libwebp7:ppc64el. 199s Preparing to unpack .../023-libwebp7_1.3.2-0.4_ppc64el.deb ... 199s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 199s Selecting previously unselected package libtiff6:ppc64el. 199s Preparing to unpack .../024-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 199s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 199s Selecting previously unselected package libwebpdemux2:ppc64el. 199s Preparing to unpack .../025-libwebpdemux2_1.3.2-0.4_ppc64el.deb ... 199s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ... 199s Selecting previously unselected package libwebpmux3:ppc64el. 199s Preparing to unpack .../026-libwebpmux3_1.3.2-0.4_ppc64el.deb ... 199s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ... 199s Selecting previously unselected package imagemagick-6-common. 199s Preparing to unpack .../027-imagemagick-6-common_8%3a6.9.12.98+dfsg1-5_all.deb ... 199s Unpacking imagemagick-6-common (8:6.9.12.98+dfsg1-5) ... 199s Selecting previously unselected package libmagickcore-6.q16-7:ppc64el. 199s Preparing to unpack .../028-libmagickcore-6.q16-7_8%3a6.9.12.98+dfsg1-5_ppc64el.deb ... 199s Unpacking libmagickcore-6.q16-7:ppc64el (8:6.9.12.98+dfsg1-5) ... 200s Selecting previously unselected package libmagickwand-6.q16-7:ppc64el. 200s Preparing to unpack .../029-libmagickwand-6.q16-7_8%3a6.9.12.98+dfsg1-5_ppc64el.deb ... 200s Unpacking libmagickwand-6.q16-7:ppc64el (8:6.9.12.98+dfsg1-5) ... 200s Selecting previously unselected package libgdk-pixbuf2.0-common. 200s Preparing to unpack .../030-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 200s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 200s Selecting previously unselected package libgdk-pixbuf-2.0-0:ppc64el. 200s Preparing to unpack .../031-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_ppc64el.deb ... 200s Unpacking libgdk-pixbuf-2.0-0:ppc64el (2.42.10+dfsg-3) ... 200s Selecting previously unselected package gtk-update-icon-cache. 200s Preparing to unpack .../032-gtk-update-icon-cache_3.24.41-1.1ubuntu1_ppc64el.deb ... 200s Unpacking gtk-update-icon-cache (3.24.41-1.1ubuntu1) ... 200s Selecting previously unselected package hicolor-icon-theme. 200s Preparing to unpack .../033-hicolor-icon-theme_0.17-2_all.deb ... 200s Unpacking hicolor-icon-theme (0.17-2) ... 200s Selecting previously unselected package humanity-icon-theme. 200s Preparing to unpack .../034-humanity-icon-theme_0.6.16_all.deb ... 200s Unpacking humanity-icon-theme (0.6.16) ... 201s Selecting previously unselected package ubuntu-mono. 201s Preparing to unpack .../035-ubuntu-mono_24.04-0ubuntu1_all.deb ... 201s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 201s Selecting previously unselected package adwaita-icon-theme. 201s Preparing to unpack .../036-adwaita-icon-theme_46~rc-1_all.deb ... 201s Unpacking adwaita-icon-theme (46~rc-1) ... 201s Selecting previously unselected package at-spi2-common. 201s Preparing to unpack .../037-at-spi2-common_2.51.90-3_all.deb ... 201s Unpacking at-spi2-common (2.51.90-3) ... 201s Selecting previously unselected package m4. 201s Preparing to unpack .../038-m4_1.4.19-4_ppc64el.deb ... 201s Unpacking m4 (1.4.19-4) ... 201s Selecting previously unselected package autoconf. 201s Preparing to unpack .../039-autoconf_2.71-3_all.deb ... 201s Unpacking autoconf (2.71-3) ... 201s Selecting previously unselected package autotools-dev. 201s Preparing to unpack .../040-autotools-dev_20220109.1_all.deb ... 201s Unpacking autotools-dev (20220109.1) ... 201s Selecting previously unselected package automake. 201s Preparing to unpack .../041-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 201s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 201s Selecting previously unselected package libisl23:ppc64el. 201s Preparing to unpack .../042-libisl23_0.26-3_ppc64el.deb ... 201s Unpacking libisl23:ppc64el (0.26-3) ... 201s Selecting previously unselected package libmpc3:ppc64el. 201s Preparing to unpack .../043-libmpc3_1.3.1-1_ppc64el.deb ... 201s Unpacking libmpc3:ppc64el (1.3.1-1) ... 201s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu. 201s Preparing to unpack .../044-cpp-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 201s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 202s Selecting previously unselected package libdconf1:ppc64el. 202s Preparing to unpack .../045-libdconf1_0.40.0-4_ppc64el.deb ... 202s Unpacking libdconf1:ppc64el (0.40.0-4) ... 202s Selecting previously unselected package dconf-service. 202s Preparing to unpack .../046-dconf-service_0.40.0-4_ppc64el.deb ... 202s Unpacking dconf-service (0.40.0-4) ... 202s Selecting previously unselected package dconf-gsettings-backend:ppc64el. 202s Preparing to unpack .../047-dconf-gsettings-backend_0.40.0-4_ppc64el.deb ... 202s Unpacking dconf-gsettings-backend:ppc64el (0.40.0-4) ... 202s Selecting previously unselected package fontconfig. 202s Preparing to unpack .../048-fontconfig_2.15.0-1ubuntu1_ppc64el.deb ... 202s Unpacking fontconfig (2.15.0-1ubuntu1) ... 202s Selecting previously unselected package libcc1-0:ppc64el. 202s Preparing to unpack .../049-libcc1-0_14-20240303-1ubuntu1_ppc64el.deb ... 202s Unpacking libcc1-0:ppc64el (14-20240303-1ubuntu1) ... 202s Selecting previously unselected package libitm1:ppc64el. 202s Preparing to unpack .../050-libitm1_14-20240303-1ubuntu1_ppc64el.deb ... 202s Unpacking libitm1:ppc64el (14-20240303-1ubuntu1) ... 202s Selecting previously unselected package libatomic1:ppc64el. 202s Preparing to unpack .../051-libatomic1_14-20240303-1ubuntu1_ppc64el.deb ... 202s Unpacking libatomic1:ppc64el (14-20240303-1ubuntu1) ... 202s Selecting previously unselected package libasan8:ppc64el. 202s Preparing to unpack .../052-libasan8_14-20240303-1ubuntu1_ppc64el.deb ... 202s Unpacking libasan8:ppc64el (14-20240303-1ubuntu1) ... 202s Selecting previously unselected package liblsan0:ppc64el. 202s Preparing to unpack .../053-liblsan0_14-20240303-1ubuntu1_ppc64el.deb ... 202s Unpacking liblsan0:ppc64el (14-20240303-1ubuntu1) ... 202s Selecting previously unselected package libtsan2:ppc64el. 202s Preparing to unpack .../054-libtsan2_14-20240303-1ubuntu1_ppc64el.deb ... 202s Unpacking libtsan2:ppc64el (14-20240303-1ubuntu1) ... 202s Selecting previously unselected package libubsan1:ppc64el. 202s Preparing to unpack .../055-libubsan1_14-20240303-1ubuntu1_ppc64el.deb ... 202s Unpacking libubsan1:ppc64el (14-20240303-1ubuntu1) ... 202s Selecting previously unselected package libquadmath0:ppc64el. 202s Preparing to unpack .../056-libquadmath0_14-20240303-1ubuntu1_ppc64el.deb ... 202s Unpacking libquadmath0:ppc64el (14-20240303-1ubuntu1) ... 202s Selecting previously unselected package libgcc-13-dev:ppc64el. 202s Preparing to unpack .../057-libgcc-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 202s Unpacking libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ... 202s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu. 202s Preparing to unpack .../058-gcc-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 202s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 203s Selecting previously unselected package gcc-13. 203s Preparing to unpack .../059-gcc-13_13.2.0-17ubuntu2_ppc64el.deb ... 203s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 203s Selecting previously unselected package libgfortran5:ppc64el. 203s Preparing to unpack .../060-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 203s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 203s Selecting previously unselected package libgfortran-13-dev:ppc64el. 203s Preparing to unpack .../061-libgfortran-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 203s Unpacking libgfortran-13-dev:ppc64el (13.2.0-17ubuntu2) ... 203s Selecting previously unselected package libc-dev-bin. 203s Preparing to unpack .../062-libc-dev-bin_2.39-0ubuntu2_ppc64el.deb ... 203s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 203s Selecting previously unselected package linux-libc-dev:ppc64el. 203s Preparing to unpack .../063-linux-libc-dev_6.8.0-11.11_ppc64el.deb ... 203s Unpacking linux-libc-dev:ppc64el (6.8.0-11.11) ... 203s Selecting previously unselected package libcrypt-dev:ppc64el. 203s Preparing to unpack .../064-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ... 203s Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) ... 203s Selecting previously unselected package libtirpc-dev:ppc64el. 203s Preparing to unpack .../065-libtirpc-dev_1.3.4+ds-1build1_ppc64el.deb ... 203s Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1build1) ... 203s Selecting previously unselected package libnsl-dev:ppc64el. 203s Preparing to unpack .../066-libnsl-dev_1.3.0-3_ppc64el.deb ... 203s Unpacking libnsl-dev:ppc64el (1.3.0-3) ... 203s Selecting previously unselected package rpcsvc-proto. 203s Preparing to unpack .../067-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ... 203s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 203s Selecting previously unselected package libc6-dev:ppc64el. 203s Preparing to unpack .../068-libc6-dev_2.39-0ubuntu2_ppc64el.deb ... 203s Unpacking libc6-dev:ppc64el (2.39-0ubuntu2) ... 204s Selecting previously unselected package gfortran-13-powerpc64le-linux-gnu. 204s Preparing to unpack .../069-gfortran-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ... 204s Unpacking gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 204s Selecting previously unselected package gfortran-13. 204s Preparing to unpack .../070-gfortran-13_13.2.0-17ubuntu2_ppc64el.deb ... 204s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 204s Selecting previously unselected package aglfn. 204s Preparing to unpack .../071-aglfn_1.7+git20191031.4036a9c-2_all.deb ... 204s Unpacking aglfn (1.7+git20191031.4036a9c-2) ... 204s Selecting previously unselected package gnuplot-data. 204s Preparing to unpack .../072-gnuplot-data_6.0.0+dfsg1-1ubuntu2_all.deb ... 204s Unpacking gnuplot-data (6.0.0+dfsg1-1ubuntu2) ... 204s Selecting previously unselected package libpixman-1-0:ppc64el. 204s Preparing to unpack .../073-libpixman-1-0_0.42.2-1_ppc64el.deb ... 204s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ... 204s Selecting previously unselected package libxcb-render0:ppc64el. 204s Preparing to unpack .../074-libxcb-render0_1.15-1_ppc64el.deb ... 204s Unpacking libxcb-render0:ppc64el (1.15-1) ... 204s Selecting previously unselected package libxcb-shm0:ppc64el. 204s Preparing to unpack .../075-libxcb-shm0_1.15-1_ppc64el.deb ... 204s Unpacking libxcb-shm0:ppc64el (1.15-1) ... 204s Selecting previously unselected package libxrender1:ppc64el. 204s Preparing to unpack .../076-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 204s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 204s Selecting previously unselected package libcairo2:ppc64el. 204s Preparing to unpack .../077-libcairo2_1.18.0-1_ppc64el.deb ... 204s Unpacking libcairo2:ppc64el (1.18.0-1) ... 204s Selecting previously unselected package libxpm4:ppc64el. 204s Preparing to unpack .../078-libxpm4_1%3a3.5.17-1_ppc64el.deb ... 204s Unpacking libxpm4:ppc64el (1:3.5.17-1) ... 204s Selecting previously unselected package libgd3:ppc64el. 204s Preparing to unpack .../079-libgd3_2.3.3-9ubuntu1_ppc64el.deb ... 204s Unpacking libgd3:ppc64el (2.3.3-9ubuntu1) ... 204s Selecting previously unselected package liblua5.4-0:ppc64el. 204s Preparing to unpack .../080-liblua5.4-0_5.4.6-3_ppc64el.deb ... 204s Unpacking liblua5.4-0:ppc64el (5.4.6-3) ... 204s Selecting previously unselected package libgraphite2-3:ppc64el. 204s Preparing to unpack .../081-libgraphite2-3_1.3.14-2_ppc64el.deb ... 204s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 204s Selecting previously unselected package libharfbuzz0b:ppc64el. 204s Preparing to unpack .../082-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 204s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 204s Selecting previously unselected package libthai-data. 204s Preparing to unpack .../083-libthai-data_0.1.29-2_all.deb ... 204s Unpacking libthai-data (0.1.29-2) ... 204s Selecting previously unselected package libdatrie1:ppc64el. 204s Preparing to unpack .../084-libdatrie1_0.2.13-3_ppc64el.deb ... 204s Unpacking libdatrie1:ppc64el (0.2.13-3) ... 204s Selecting previously unselected package libthai0:ppc64el. 204s Preparing to unpack .../085-libthai0_0.1.29-2_ppc64el.deb ... 204s Unpacking libthai0:ppc64el (0.1.29-2) ... 204s Selecting previously unselected package libpango-1.0-0:ppc64el. 204s Preparing to unpack .../086-libpango-1.0-0_1.51.0+ds-4_ppc64el.deb ... 204s Unpacking libpango-1.0-0:ppc64el (1.51.0+ds-4) ... 204s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 204s Preparing to unpack .../087-libpangoft2-1.0-0_1.51.0+ds-4_ppc64el.deb ... 204s Unpacking libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ... 204s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 204s Preparing to unpack .../088-libpangocairo-1.0-0_1.51.0+ds-4_ppc64el.deb ... 204s Unpacking libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ... 204s Selecting previously unselected package libdouble-conversion3:ppc64el. 204s Preparing to unpack .../089-libdouble-conversion3_3.3.0-1_ppc64el.deb ... 204s Unpacking libdouble-conversion3:ppc64el (3.3.0-1) ... 204s Selecting previously unselected package libpcre2-16-0:ppc64el. 204s Preparing to unpack .../090-libpcre2-16-0_10.42-4ubuntu1_ppc64el.deb ... 204s Unpacking libpcre2-16-0:ppc64el (10.42-4ubuntu1) ... 204s Selecting previously unselected package libqt5core5t64:ppc64el. 204s Preparing to unpack .../091-libqt5core5t64_5.15.12+dfsg-3ubuntu5_ppc64el.deb ... 204s Unpacking libqt5core5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 204s Selecting previously unselected package libglvnd0:ppc64el. 204s Preparing to unpack .../092-libglvnd0_1.7.0-1_ppc64el.deb ... 204s Unpacking libglvnd0:ppc64el (1.7.0-1) ... 204s Selecting previously unselected package libwayland-server0:ppc64el. 204s Preparing to unpack .../093-libwayland-server0_1.22.0-2.1_ppc64el.deb ... 204s Unpacking libwayland-server0:ppc64el (1.22.0-2.1) ... 204s Selecting previously unselected package libxcb-randr0:ppc64el. 204s Preparing to unpack .../094-libxcb-randr0_1.15-1_ppc64el.deb ... 204s Unpacking libxcb-randr0:ppc64el (1.15-1) ... 204s Selecting previously unselected package libgbm1:ppc64el. 204s Preparing to unpack .../095-libgbm1_24.0.1-1ubuntu1_ppc64el.deb ... 204s Unpacking libgbm1:ppc64el (24.0.1-1ubuntu1) ... 204s Selecting previously unselected package libglapi-mesa:ppc64el. 204s Preparing to unpack .../096-libglapi-mesa_24.0.1-1ubuntu1_ppc64el.deb ... 204s Unpacking libglapi-mesa:ppc64el (24.0.1-1ubuntu1) ... 204s Selecting previously unselected package libwayland-client0:ppc64el. 204s Preparing to unpack .../097-libwayland-client0_1.22.0-2.1_ppc64el.deb ... 204s Unpacking libwayland-client0:ppc64el (1.22.0-2.1) ... 204s Selecting previously unselected package libx11-xcb1:ppc64el. 204s Preparing to unpack .../098-libx11-xcb1_2%3a1.8.7-1_ppc64el.deb ... 204s Unpacking libx11-xcb1:ppc64el (2:1.8.7-1) ... 204s Selecting previously unselected package libxcb-dri2-0:ppc64el. 204s Preparing to unpack .../099-libxcb-dri2-0_1.15-1_ppc64el.deb ... 204s Unpacking libxcb-dri2-0:ppc64el (1.15-1) ... 204s Selecting previously unselected package libxcb-dri3-0:ppc64el. 204s Preparing to unpack .../100-libxcb-dri3-0_1.15-1_ppc64el.deb ... 204s Unpacking libxcb-dri3-0:ppc64el (1.15-1) ... 204s Selecting previously unselected package libxcb-present0:ppc64el. 204s Preparing to unpack .../101-libxcb-present0_1.15-1_ppc64el.deb ... 204s Unpacking libxcb-present0:ppc64el (1.15-1) ... 204s Selecting previously unselected package libxcb-sync1:ppc64el. 204s Preparing to unpack .../102-libxcb-sync1_1.15-1_ppc64el.deb ... 205s Unpacking libxcb-sync1:ppc64el (1.15-1) ... 205s Selecting previously unselected package libxcb-xfixes0:ppc64el. 205s Preparing to unpack .../103-libxcb-xfixes0_1.15-1_ppc64el.deb ... 205s Unpacking libxcb-xfixes0:ppc64el (1.15-1) ... 205s Selecting previously unselected package libxshmfence1:ppc64el. 205s Preparing to unpack .../104-libxshmfence1_1.3-1build4_ppc64el.deb ... 205s Unpacking libxshmfence1:ppc64el (1.3-1build4) ... 205s Selecting previously unselected package libegl-mesa0:ppc64el. 205s Preparing to unpack .../105-libegl-mesa0_24.0.1-1ubuntu1_ppc64el.deb ... 205s Unpacking libegl-mesa0:ppc64el (24.0.1-1ubuntu1) ... 205s Selecting previously unselected package libegl1:ppc64el. 205s Preparing to unpack .../106-libegl1_1.7.0-1_ppc64el.deb ... 205s Unpacking libegl1:ppc64el (1.7.0-1) ... 205s Selecting previously unselected package libxcb-glx0:ppc64el. 205s Preparing to unpack .../107-libxcb-glx0_1.15-1_ppc64el.deb ... 205s Unpacking libxcb-glx0:ppc64el (1.15-1) ... 205s Selecting previously unselected package libxfixes3:ppc64el. 205s Preparing to unpack .../108-libxfixes3_1%3a6.0.0-2_ppc64el.deb ... 205s Unpacking libxfixes3:ppc64el (1:6.0.0-2) ... 205s Selecting previously unselected package libxxf86vm1:ppc64el. 205s Preparing to unpack .../109-libxxf86vm1_1%3a1.1.4-1build3_ppc64el.deb ... 205s Unpacking libxxf86vm1:ppc64el (1:1.1.4-1build3) ... 205s Selecting previously unselected package libvulkan1:ppc64el. 205s Preparing to unpack .../110-libvulkan1_1.3.275.0-1_ppc64el.deb ... 205s Unpacking libvulkan1:ppc64el (1.3.275.0-1) ... 205s Selecting previously unselected package libdrm-amdgpu1:ppc64el. 205s Preparing to unpack .../111-libdrm-amdgpu1_2.4.120-2_ppc64el.deb ... 205s Unpacking libdrm-amdgpu1:ppc64el (2.4.120-2) ... 205s Selecting previously unselected package libdrm-nouveau2:ppc64el. 205s Preparing to unpack .../112-libdrm-nouveau2_2.4.120-2_ppc64el.deb ... 205s Unpacking libdrm-nouveau2:ppc64el (2.4.120-2) ... 205s Selecting previously unselected package libdrm-radeon1:ppc64el. 205s Preparing to unpack .../113-libdrm-radeon1_2.4.120-2_ppc64el.deb ... 205s Unpacking libdrm-radeon1:ppc64el (2.4.120-2) ... 205s Selecting previously unselected package libllvm17:ppc64el. 205s Preparing to unpack .../114-libllvm17_1%3a17.0.6-5build1_ppc64el.deb ... 205s Unpacking libllvm17:ppc64el (1:17.0.6-5build1) ... 206s Selecting previously unselected package libgl1-mesa-dri:ppc64el. 206s Preparing to unpack .../115-libgl1-mesa-dri_24.0.1-1ubuntu1_ppc64el.deb ... 206s Unpacking libgl1-mesa-dri:ppc64el (24.0.1-1ubuntu1) ... 206s Selecting previously unselected package libglx-mesa0:ppc64el. 206s Preparing to unpack .../116-libglx-mesa0_24.0.1-1ubuntu1_ppc64el.deb ... 206s Unpacking libglx-mesa0:ppc64el (24.0.1-1ubuntu1) ... 206s Selecting previously unselected package libglx0:ppc64el. 206s Preparing to unpack .../117-libglx0_1.7.0-1_ppc64el.deb ... 206s Unpacking libglx0:ppc64el (1.7.0-1) ... 206s Selecting previously unselected package libgl1:ppc64el. 206s Preparing to unpack .../118-libgl1_1.7.0-1_ppc64el.deb ... 206s Unpacking libgl1:ppc64el (1.7.0-1) ... 206s Selecting previously unselected package x11-common. 206s Preparing to unpack .../119-x11-common_1%3a7.7+23ubuntu2_all.deb ... 206s Unpacking x11-common (1:7.7+23ubuntu2) ... 206s Selecting previously unselected package libice6:ppc64el. 206s Preparing to unpack .../120-libice6_2%3a1.0.10-1build2_ppc64el.deb ... 206s Unpacking libice6:ppc64el (2:1.0.10-1build2) ... 206s Selecting previously unselected package libmtdev1t64:ppc64el. 206s Preparing to unpack .../121-libmtdev1t64_1.1.6-1.1_ppc64el.deb ... 206s Unpacking libmtdev1t64:ppc64el (1.1.6-1.1) ... 206s Selecting previously unselected package libwacom-common. 206s Preparing to unpack .../122-libwacom-common_2.10.0-1_all.deb ... 206s Unpacking libwacom-common (2.10.0-1) ... 206s Selecting previously unselected package libwacom9:ppc64el. 206s Preparing to unpack .../123-libwacom9_2.10.0-1_ppc64el.deb ... 206s Unpacking libwacom9:ppc64el (2.10.0-1) ... 206s Selecting previously unselected package libinput-bin. 206s Preparing to unpack .../124-libinput-bin_1.25.0-1_ppc64el.deb ... 206s Unpacking libinput-bin (1.25.0-1) ... 206s Selecting previously unselected package libinput10:ppc64el. 206s Preparing to unpack .../125-libinput10_1.25.0-1_ppc64el.deb ... 206s Unpacking libinput10:ppc64el (1.25.0-1) ... 206s Selecting previously unselected package libmd4c0:ppc64el. 206s Preparing to unpack .../126-libmd4c0_0.4.8-1_ppc64el.deb ... 206s Unpacking libmd4c0:ppc64el (0.4.8-1) ... 206s Selecting previously unselected package libqt5dbus5t64:ppc64el. 206s Preparing to unpack .../127-libqt5dbus5t64_5.15.12+dfsg-3ubuntu5_ppc64el.deb ... 206s Unpacking libqt5dbus5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 206s Selecting previously unselected package libqt5network5t64:ppc64el. 206s Preparing to unpack .../128-libqt5network5t64_5.15.12+dfsg-3ubuntu5_ppc64el.deb ... 206s Unpacking libqt5network5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 206s Selecting previously unselected package libsm6:ppc64el. 206s Preparing to unpack .../129-libsm6_2%3a1.2.3-1build2_ppc64el.deb ... 206s Unpacking libsm6:ppc64el (2:1.2.3-1build2) ... 206s Selecting previously unselected package libxcb-icccm4:ppc64el. 206s Preparing to unpack .../130-libxcb-icccm4_0.4.1-1.1build2_ppc64el.deb ... 206s Unpacking libxcb-icccm4:ppc64el (0.4.1-1.1build2) ... 206s Selecting previously unselected package libxcb-util1:ppc64el. 206s Preparing to unpack .../131-libxcb-util1_0.4.0-1build2_ppc64el.deb ... 206s Unpacking libxcb-util1:ppc64el (0.4.0-1build2) ... 206s Selecting previously unselected package libxcb-image0:ppc64el. 206s Preparing to unpack .../132-libxcb-image0_0.4.0-2_ppc64el.deb ... 206s Unpacking libxcb-image0:ppc64el (0.4.0-2) ... 206s Selecting previously unselected package libxcb-keysyms1:ppc64el. 206s Preparing to unpack .../133-libxcb-keysyms1_0.4.0-1build3_ppc64el.deb ... 206s Unpacking libxcb-keysyms1:ppc64el (0.4.0-1build3) ... 206s Selecting previously unselected package libxcb-render-util0:ppc64el. 206s Preparing to unpack .../134-libxcb-render-util0_0.3.9-1build3_ppc64el.deb ... 206s Unpacking libxcb-render-util0:ppc64el (0.3.9-1build3) ... 206s Selecting previously unselected package libxcb-shape0:ppc64el. 206s Preparing to unpack .../135-libxcb-shape0_1.15-1_ppc64el.deb ... 206s Unpacking libxcb-shape0:ppc64el (1.15-1) ... 206s Selecting previously unselected package libxcb-xinerama0:ppc64el. 206s Preparing to unpack .../136-libxcb-xinerama0_1.15-1_ppc64el.deb ... 206s Unpacking libxcb-xinerama0:ppc64el (1.15-1) ... 206s Selecting previously unselected package libxcb-xinput0:ppc64el. 206s Preparing to unpack .../137-libxcb-xinput0_1.15-1_ppc64el.deb ... 206s Unpacking libxcb-xinput0:ppc64el (1.15-1) ... 206s Selecting previously unselected package libxcb-xkb1:ppc64el. 206s Preparing to unpack .../138-libxcb-xkb1_1.15-1_ppc64el.deb ... 206s Unpacking libxcb-xkb1:ppc64el (1.15-1) ... 206s Selecting previously unselected package libxkbcommon-x11-0:ppc64el. 206s Preparing to unpack .../139-libxkbcommon-x11-0_1.6.0-1_ppc64el.deb ... 206s Unpacking libxkbcommon-x11-0:ppc64el (1.6.0-1) ... 206s Selecting previously unselected package libqt5gui5t64:ppc64el. 206s Preparing to unpack .../140-libqt5gui5t64_5.15.12+dfsg-3ubuntu5_ppc64el.deb ... 206s Unpacking libqt5gui5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 207s Selecting previously unselected package libavahi-common-data:ppc64el. 207s Preparing to unpack .../141-libavahi-common-data_0.8-13ubuntu2_ppc64el.deb ... 207s Unpacking libavahi-common-data:ppc64el (0.8-13ubuntu2) ... 207s Selecting previously unselected package libavahi-common3:ppc64el. 207s Preparing to unpack .../142-libavahi-common3_0.8-13ubuntu2_ppc64el.deb ... 207s Unpacking libavahi-common3:ppc64el (0.8-13ubuntu2) ... 207s Selecting previously unselected package libavahi-client3:ppc64el. 207s Preparing to unpack .../143-libavahi-client3_0.8-13ubuntu2_ppc64el.deb ... 207s Unpacking libavahi-client3:ppc64el (0.8-13ubuntu2) ... 207s Selecting previously unselected package libcups2:ppc64el. 207s Preparing to unpack .../144-libcups2_2.4.6-0ubuntu3_ppc64el.deb ... 207s Unpacking libcups2:ppc64el (2.4.6-0ubuntu3) ... 207s Selecting previously unselected package libqt5widgets5t64:ppc64el. 207s Preparing to unpack .../145-libqt5widgets5t64_5.15.12+dfsg-3ubuntu5_ppc64el.deb ... 207s Unpacking libqt5widgets5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 207s Selecting previously unselected package libqt5printsupport5t64:ppc64el. 207s Preparing to unpack .../146-libqt5printsupport5t64_5.15.12+dfsg-3ubuntu5_ppc64el.deb ... 207s Unpacking libqt5printsupport5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 207s Selecting previously unselected package libqt5svg5:ppc64el. 207s Preparing to unpack .../147-libqt5svg5_5.15.12-1_ppc64el.deb ... 207s Unpacking libqt5svg5:ppc64el (5.15.12-1) ... 207s Selecting previously unselected package libpcre2-32-0:ppc64el. 207s Preparing to unpack .../148-libpcre2-32-0_10.42-4ubuntu1_ppc64el.deb ... 207s Unpacking libpcre2-32-0:ppc64el (10.42-4ubuntu1) ... 207s Selecting previously unselected package libwxbase3.2-1t64:ppc64el. 207s Preparing to unpack .../149-libwxbase3.2-1t64_3.2.4+dfsg-3.1build1_ppc64el.deb ... 207s Unpacking libwxbase3.2-1t64:ppc64el (3.2.4+dfsg-3.1build1) ... 207s Selecting previously unselected package libatk1.0-0t64:ppc64el. 207s Preparing to unpack .../150-libatk1.0-0t64_2.51.90-3_ppc64el.deb ... 207s Unpacking libatk1.0-0t64:ppc64el (2.51.90-3) ... 207s Selecting previously unselected package libxi6:ppc64el. 207s Preparing to unpack .../151-libxi6_2%3a1.8.1-1_ppc64el.deb ... 207s Unpacking libxi6:ppc64el (2:1.8.1-1) ... 207s Selecting previously unselected package libatspi2.0-0t64:ppc64el. 207s Preparing to unpack .../152-libatspi2.0-0t64_2.51.90-3_ppc64el.deb ... 207s Unpacking libatspi2.0-0t64:ppc64el (2.51.90-3) ... 207s Selecting previously unselected package libatk-bridge2.0-0t64:ppc64el. 207s Preparing to unpack .../153-libatk-bridge2.0-0t64_2.51.90-3_ppc64el.deb ... 207s Unpacking libatk-bridge2.0-0t64:ppc64el (2.51.90-3) ... 207s Selecting previously unselected package libcairo-gobject2:ppc64el. 207s Preparing to unpack .../154-libcairo-gobject2_1.18.0-1_ppc64el.deb ... 207s Unpacking libcairo-gobject2:ppc64el (1.18.0-1) ... 207s Selecting previously unselected package libcolord2:ppc64el. 207s Preparing to unpack .../155-libcolord2_1.4.7-1_ppc64el.deb ... 207s Unpacking libcolord2:ppc64el (1.4.7-1) ... 207s Selecting previously unselected package libepoxy0:ppc64el. 207s Preparing to unpack .../156-libepoxy0_1.5.10-1_ppc64el.deb ... 207s Unpacking libepoxy0:ppc64el (1.5.10-1) ... 207s Selecting previously unselected package libwayland-cursor0:ppc64el. 207s Preparing to unpack .../157-libwayland-cursor0_1.22.0-2.1_ppc64el.deb ... 207s Unpacking libwayland-cursor0:ppc64el (1.22.0-2.1) ... 207s Selecting previously unselected package libwayland-egl1:ppc64el. 207s Preparing to unpack .../158-libwayland-egl1_1.22.0-2.1_ppc64el.deb ... 207s Unpacking libwayland-egl1:ppc64el (1.22.0-2.1) ... 207s Selecting previously unselected package libxcomposite1:ppc64el. 207s Preparing to unpack .../159-libxcomposite1_1%3a0.4.5-1build2_ppc64el.deb ... 207s Unpacking libxcomposite1:ppc64el (1:0.4.5-1build2) ... 207s Selecting previously unselected package libxcursor1:ppc64el. 207s Preparing to unpack .../160-libxcursor1_1%3a1.2.1-1_ppc64el.deb ... 207s Unpacking libxcursor1:ppc64el (1:1.2.1-1) ... 207s Selecting previously unselected package libxdamage1:ppc64el. 207s Preparing to unpack .../161-libxdamage1_1%3a1.1.6-1_ppc64el.deb ... 207s Unpacking libxdamage1:ppc64el (1:1.1.6-1) ... 207s Selecting previously unselected package libxinerama1:ppc64el. 207s Preparing to unpack .../162-libxinerama1_2%3a1.1.4-3_ppc64el.deb ... 207s Unpacking libxinerama1:ppc64el (2:1.1.4-3) ... 207s Selecting previously unselected package libxrandr2:ppc64el. 207s Preparing to unpack .../163-libxrandr2_2%3a1.5.2-2_ppc64el.deb ... 207s Unpacking libxrandr2:ppc64el (2:1.5.2-2) ... 207s Selecting previously unselected package libgtk-3-common. 207s Preparing to unpack .../164-libgtk-3-common_3.24.41-1.1ubuntu1_all.deb ... 207s Unpacking libgtk-3-common (3.24.41-1.1ubuntu1) ... 207s Selecting previously unselected package libgtk-3-0t64:ppc64el. 207s Preparing to unpack .../165-libgtk-3-0t64_3.24.41-1.1ubuntu1_ppc64el.deb ... 207s Unpacking libgtk-3-0t64:ppc64el (3.24.41-1.1ubuntu1) ... 207s Selecting previously unselected package libnotify4:ppc64el. 207s Preparing to unpack .../166-libnotify4_0.8.3-1_ppc64el.deb ... 207s Unpacking libnotify4:ppc64el (0.8.3-1) ... 207s Selecting previously unselected package libxtst6:ppc64el. 207s Preparing to unpack .../167-libxtst6_2%3a1.2.3-1.1_ppc64el.deb ... 207s Unpacking libxtst6:ppc64el (2:1.2.3-1.1) ... 207s Selecting previously unselected package libwxgtk3.2-1t64:ppc64el. 207s Preparing to unpack .../168-libwxgtk3.2-1t64_3.2.4+dfsg-3.1build1_ppc64el.deb ... 207s Unpacking libwxgtk3.2-1t64:ppc64el (3.2.4+dfsg-3.1build1) ... 208s Selecting previously unselected package gnuplot-qt. 208s Preparing to unpack .../169-gnuplot-qt_6.0.0+dfsg1-1ubuntu2_ppc64el.deb ... 208s Unpacking gnuplot-qt (6.0.0+dfsg1-1ubuntu2) ... 208s Selecting previously unselected package gnuplot. 208s Preparing to unpack .../170-gnuplot_6.0.0+dfsg1-1ubuntu2_all.deb ... 208s Unpacking gnuplot (6.0.0+dfsg1-1ubuntu2) ... 208s Selecting previously unselected package icu-devtools. 208s Preparing to unpack .../171-icu-devtools_74.2-1ubuntu1_ppc64el.deb ... 208s Unpacking icu-devtools (74.2-1ubuntu1) ... 208s Selecting previously unselected package imagemagick-6.q16. 208s Preparing to unpack .../172-imagemagick-6.q16_8%3a6.9.12.98+dfsg1-5_ppc64el.deb ... 208s Unpacking imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ... 208s Selecting previously unselected package imagemagick. 208s Preparing to unpack .../173-imagemagick_8%3a6.9.12.98+dfsg1-5_ppc64el.deb ... 208s Unpacking imagemagick (8:6.9.12.98+dfsg1-5) ... 208s Selecting previously unselected package libamd-comgr2:ppc64el. 208s Preparing to unpack .../174-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_ppc64el.deb ... 208s Unpacking libamd-comgr2:ppc64el (6.0+git20231212.4510c28+dfsg-3) ... 208s Selecting previously unselected package libhsakmt1:ppc64el. 208s Preparing to unpack .../175-libhsakmt1_5.7.0-1_ppc64el.deb ... 208s Unpacking libhsakmt1:ppc64el (5.7.0-1) ... 208s Selecting previously unselected package libhsa-runtime64-1. 208s Preparing to unpack .../176-libhsa-runtime64-1_5.7.1-1_ppc64el.deb ... 208s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 208s Selecting previously unselected package libamdhip64-5. 208s Preparing to unpack .../177-libamdhip64-5_5.2.3-12_ppc64el.deb ... 208s Unpacking libamdhip64-5 (5.2.3-12) ... 208s Selecting previously unselected package libio-string-perl. 208s Preparing to unpack .../178-libio-string-perl_1.08-4_all.deb ... 208s Unpacking libio-string-perl (1.08-4) ... 208s Selecting previously unselected package libdata-stag-perl. 208s Preparing to unpack .../179-libdata-stag-perl_0.14-3_all.deb ... 208s Unpacking libdata-stag-perl (0.14-3) ... 208s Selecting previously unselected package libbio-perl-perl. 208s Preparing to unpack .../180-libbio-perl-perl_1.7.8-1_all.deb ... 208s Unpacking libbio-perl-perl (1.7.8-1) ... 209s Selecting previously unselected package libblas3:ppc64el. 209s Preparing to unpack .../181-libblas3_3.12.0-3_ppc64el.deb ... 209s Unpacking libblas3:ppc64el (3.12.0-3) ... 209s Selecting previously unselected package libstdc++-13-dev:ppc64el. 209s Preparing to unpack .../182-libstdc++-13-dev_13.2.0-17ubuntu2_ppc64el.deb ... 209s Unpacking libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ... 209s Selecting previously unselected package libboost1.83-dev:ppc64el. 209s Preparing to unpack .../183-libboost1.83-dev_1.83.0-2ubuntu1_ppc64el.deb ... 209s Unpacking libboost1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 212s Selecting previously unselected package libboost-atomic1.83.0:ppc64el. 212s Preparing to unpack .../184-libboost-atomic1.83.0_1.83.0-2ubuntu1_ppc64el.deb ... 212s Unpacking libboost-atomic1.83.0:ppc64el (1.83.0-2ubuntu1) ... 212s Selecting previously unselected package libboost-atomic1.83-dev:ppc64el. 212s Preparing to unpack .../185-libboost-atomic1.83-dev_1.83.0-2ubuntu1_ppc64el.deb ... 212s Unpacking libboost-atomic1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 212s Selecting previously unselected package libboost-filesystem1.83.0:ppc64el. 212s Preparing to unpack .../186-libboost-filesystem1.83.0_1.83.0-2ubuntu1_ppc64el.deb ... 212s Unpacking libboost-filesystem1.83.0:ppc64el (1.83.0-2ubuntu1) ... 212s Selecting previously unselected package libboost-system1.83.0:ppc64el. 212s Preparing to unpack .../187-libboost-system1.83.0_1.83.0-2ubuntu1_ppc64el.deb ... 212s Unpacking libboost-system1.83.0:ppc64el (1.83.0-2ubuntu1) ... 212s Selecting previously unselected package libboost-system1.83-dev:ppc64el. 212s Preparing to unpack .../188-libboost-system1.83-dev_1.83.0-2ubuntu1_ppc64el.deb ... 212s Unpacking libboost-system1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 212s Selecting previously unselected package libboost-filesystem1.83-dev:ppc64el. 212s Preparing to unpack .../189-libboost-filesystem1.83-dev_1.83.0-2ubuntu1_ppc64el.deb ... 212s Unpacking libboost-filesystem1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 212s Selecting previously unselected package libboost-filesystem-dev:ppc64el. 212s Preparing to unpack .../190-libboost-filesystem-dev_1.83.0.1ubuntu2_ppc64el.deb ... 212s Unpacking libboost-filesystem-dev:ppc64el (1.83.0.1ubuntu2) ... 212s Selecting previously unselected package libboost-regex1.83.0:ppc64el. 212s Preparing to unpack .../191-libboost-regex1.83.0_1.83.0-2ubuntu1_ppc64el.deb ... 212s Unpacking libboost-regex1.83.0:ppc64el (1.83.0-2ubuntu1) ... 213s Selecting previously unselected package libicu-dev:ppc64el. 213s Preparing to unpack .../192-libicu-dev_74.2-1ubuntu1_ppc64el.deb ... 213s Unpacking libicu-dev:ppc64el (74.2-1ubuntu1) ... 213s Selecting previously unselected package libboost-regex1.83-dev:ppc64el. 213s Preparing to unpack .../193-libboost-regex1.83-dev_1.83.0-2ubuntu1_ppc64el.deb ... 213s Unpacking libboost-regex1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 213s Selecting previously unselected package libboost-iostreams1.83.0:ppc64el. 213s Preparing to unpack .../194-libboost-iostreams1.83.0_1.83.0-2ubuntu1_ppc64el.deb ... 213s Unpacking libboost-iostreams1.83.0:ppc64el (1.83.0-2ubuntu1) ... 213s Selecting previously unselected package libboost-iostreams1.83-dev:ppc64el. 213s Preparing to unpack .../195-libboost-iostreams1.83-dev_1.83.0-2ubuntu1_ppc64el.deb ... 213s Unpacking libboost-iostreams1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 213s Selecting previously unselected package libboost-iostreams-dev:ppc64el. 213s Preparing to unpack .../196-libboost-iostreams-dev_1.83.0.1ubuntu2_ppc64el.deb ... 213s Unpacking libboost-iostreams-dev:ppc64el (1.83.0.1ubuntu2) ... 213s Selecting previously unselected package libboost-regex-dev:ppc64el. 213s Preparing to unpack .../197-libboost-regex-dev_1.83.0.1ubuntu2_ppc64el.deb ... 213s Unpacking libboost-regex-dev:ppc64el (1.83.0.1ubuntu2) ... 213s Selecting previously unselected package libcrypto++8t64:ppc64el. 213s Preparing to unpack .../198-libcrypto++8t64_8.9.0-1.1_ppc64el.deb ... 213s Unpacking libcrypto++8t64:ppc64el (8.9.0-1.1) ... 213s Selecting previously unselected package libcrypto++-dev:ppc64el. 213s Preparing to unpack .../199-libcrypto++-dev_8.9.0-1.1_ppc64el.deb ... 213s Unpacking libcrypto++-dev:ppc64el (8.9.0-1.1) ... 213s Selecting previously unselected package libevent-2.1-7:ppc64el. 213s Preparing to unpack .../200-libevent-2.1-7_2.1.12-stable-9_ppc64el.deb ... 213s Unpacking libevent-2.1-7:ppc64el (2.1.12-stable-9) ... 213s Selecting previously unselected package libevent-extra-2.1-7:ppc64el. 213s Preparing to unpack .../201-libevent-extra-2.1-7_2.1.12-stable-9_ppc64el.deb ... 213s Unpacking libevent-extra-2.1-7:ppc64el (2.1.12-stable-9) ... 213s Selecting previously unselected package libevent-pthreads-2.1-7:ppc64el. 213s Preparing to unpack .../202-libevent-pthreads-2.1-7_2.1.12-stable-9_ppc64el.deb ... 213s Unpacking libevent-pthreads-2.1-7:ppc64el (2.1.12-stable-9) ... 213s Selecting previously unselected package libevent-openssl-2.1-7:ppc64el. 213s Preparing to unpack .../203-libevent-openssl-2.1-7_2.1.12-stable-9_ppc64el.deb ... 213s Unpacking libevent-openssl-2.1-7:ppc64el (2.1.12-stable-9) ... 213s Selecting previously unselected package libevent-dev. 213s Preparing to unpack .../204-libevent-dev_2.1.12-stable-9_ppc64el.deb ... 213s Unpacking libevent-dev (2.1.12-stable-9) ... 213s Selecting previously unselected package librdmacm1t64:ppc64el. 213s Preparing to unpack .../205-librdmacm1t64_50.0-2_ppc64el.deb ... 213s Unpacking librdmacm1t64:ppc64el (50.0-2) ... 213s Selecting previously unselected package libfabric1:ppc64el. 213s Preparing to unpack .../206-libfabric1_1.17.0-3_ppc64el.deb ... 213s Unpacking libfabric1:ppc64el (1.17.0-3) ... 214s Selecting previously unselected package libhwloc15:ppc64el. 214s Preparing to unpack .../207-libhwloc15_2.10.0-1_ppc64el.deb ... 214s Unpacking libhwloc15:ppc64el (2.10.0-1) ... 214s Selecting previously unselected package libjs-jquery. 214s Preparing to unpack .../208-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 214s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 214s Selecting previously unselected package libjs-jquery-ui. 214s Preparing to unpack .../209-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 214s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 214s Selecting previously unselected package liblapack3:ppc64el. 214s Preparing to unpack .../210-liblapack3_3.12.0-3_ppc64el.deb ... 214s Unpacking liblapack3:ppc64el (3.12.0-3) ... 214s Selecting previously unselected package libltdl-dev:ppc64el. 214s Preparing to unpack .../211-libltdl-dev_2.4.7-7_ppc64el.deb ... 214s Unpacking libltdl-dev:ppc64el (2.4.7-7) ... 214s Selecting previously unselected package libnl-3-dev:ppc64el. 214s Preparing to unpack .../212-libnl-3-dev_3.7.0-0.3_ppc64el.deb ... 214s Unpacking libnl-3-dev:ppc64el (3.7.0-0.3) ... 214s Selecting previously unselected package libnl-route-3-dev:ppc64el. 214s Preparing to unpack .../213-libnl-route-3-dev_3.7.0-0.3_ppc64el.deb ... 214s Unpacking libnl-route-3-dev:ppc64el (3.7.0-0.3) ... 214s Selecting previously unselected package libmunge2:ppc64el. 214s Preparing to unpack .../214-libmunge2_0.5.15-3ubuntu1_ppc64el.deb ... 214s Unpacking libmunge2:ppc64el (0.5.15-3ubuntu1) ... 214s Selecting previously unselected package libpciaccess0:ppc64el. 214s Preparing to unpack .../215-libpciaccess0_0.17-3_ppc64el.deb ... 214s Unpacking libpciaccess0:ppc64el (0.17-3) ... 214s Selecting previously unselected package libxnvctrl0:ppc64el. 214s Preparing to unpack .../216-libxnvctrl0_510.47.03-0ubuntu1_ppc64el.deb ... 214s Unpacking libxnvctrl0:ppc64el (510.47.03-0ubuntu1) ... 214s Selecting previously unselected package ocl-icd-libopencl1:ppc64el. 214s Preparing to unpack .../217-ocl-icd-libopencl1_2.3.2-1_ppc64el.deb ... 214s Unpacking ocl-icd-libopencl1:ppc64el (2.3.2-1) ... 214s Selecting previously unselected package libhwloc-plugins:ppc64el. 214s Preparing to unpack .../218-libhwloc-plugins_2.10.0-1_ppc64el.deb ... 214s Unpacking libhwloc-plugins:ppc64el (2.10.0-1) ... 214s Selecting previously unselected package libpmix2:ppc64el. 214s Preparing to unpack .../219-libpmix2_5.0.1-4_ppc64el.deb ... 214s Unpacking libpmix2:ppc64el (5.0.1-4) ... 214s Selecting previously unselected package libucx0:ppc64el. 214s Preparing to unpack .../220-libucx0_1.16.0+ds-4_ppc64el.deb ... 214s Unpacking libucx0:ppc64el (1.16.0+ds-4) ... 214s Selecting previously unselected package libopenmpi3:ppc64el. 214s Preparing to unpack .../221-libopenmpi3_4.1.6-5ubuntu1_ppc64el.deb ... 214s Unpacking libopenmpi3:ppc64el (4.1.6-5ubuntu1) ... 214s Selecting previously unselected package libpaper1:ppc64el. 214s Preparing to unpack .../222-libpaper1_1.1.29_ppc64el.deb ... 214s Unpacking libpaper1:ppc64el (1.1.29) ... 214s Selecting previously unselected package libpaper-utils. 214s Preparing to unpack .../223-libpaper-utils_1.1.29_ppc64el.deb ... 214s Unpacking libpaper-utils (1.1.29) ... 214s Selecting previously unselected package libnuma-dev:ppc64el. 214s Preparing to unpack .../224-libnuma-dev_2.0.18-1_ppc64el.deb ... 214s Unpacking libnuma-dev:ppc64el (2.0.18-1) ... 214s Selecting previously unselected package libhwloc-dev:ppc64el. 214s Preparing to unpack .../225-libhwloc-dev_2.10.0-1_ppc64el.deb ... 214s Unpacking libhwloc-dev:ppc64el (2.10.0-1) ... 214s Selecting previously unselected package zlib1g-dev:ppc64el. 214s Preparing to unpack .../226-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_ppc64el.deb ... 214s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ... 214s Selecting previously unselected package libpmix-dev:ppc64el. 214s Preparing to unpack .../227-libpmix-dev_5.0.1-4_ppc64el.deb ... 214s Unpacking libpmix-dev:ppc64el (5.0.1-4) ... 214s Selecting previously unselected package libpstreams-dev. 214s Preparing to unpack .../228-libpstreams-dev_1.0.3-1_all.deb ... 214s Unpacking libpstreams-dev (1.0.3-1) ... 214s Selecting previously unselected package libtcl8.6:ppc64el. 214s Preparing to unpack .../229-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ... 214s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ... 215s Selecting previously unselected package libterm-readkey-perl. 215s Preparing to unpack .../230-libterm-readkey-perl_2.38-2build2_ppc64el.deb ... 215s Unpacking libterm-readkey-perl (2.38-2build2) ... 215s Selecting previously unselected package libtext-wrapper-perl. 215s Preparing to unpack .../231-libtext-wrapper-perl_1.05-4_all.deb ... 215s Unpacking libtext-wrapper-perl (1.05-4) ... 215s Selecting previously unselected package libxft2:ppc64el. 215s Preparing to unpack .../232-libxft2_2.3.6-1_ppc64el.deb ... 215s Unpacking libxft2:ppc64el (2.3.6-1) ... 215s Selecting previously unselected package libxss1:ppc64el. 215s Preparing to unpack .../233-libxss1_1%3a1.2.3-1build2_ppc64el.deb ... 215s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ... 215s Selecting previously unselected package libtk8.6:ppc64el. 215s Preparing to unpack .../234-libtk8.6_8.6.13-2_ppc64el.deb ... 215s Unpacking libtk8.6:ppc64el (8.6.13-2) ... 215s Selecting previously unselected package libxt6:ppc64el. 215s Preparing to unpack .../235-libxt6_1%3a1.2.1-1.1_ppc64el.deb ... 215s Unpacking libxt6:ppc64el (1:1.2.1-1.1) ... 215s Selecting previously unselected package zip. 215s Preparing to unpack .../236-zip_3.0-13_ppc64el.deb ... 215s Unpacking zip (3.0-13) ... 215s Selecting previously unselected package unzip. 215s Preparing to unpack .../237-unzip_6.0-28ubuntu3_ppc64el.deb ... 215s Unpacking unzip (6.0-28ubuntu3) ... 215s Selecting previously unselected package xdg-utils. 215s Preparing to unpack .../238-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 215s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 215s Selecting previously unselected package r-base-core. 215s Preparing to unpack .../239-r-base-core_4.3.2-1build1_ppc64el.deb ... 215s Unpacking r-base-core (4.3.2-1build1) ... 215s Selecting previously unselected package r-cran-gtools. 215s Preparing to unpack .../240-r-cran-gtools_3.9.5-1_ppc64el.deb ... 215s Unpacking r-cran-gtools (3.9.5-1) ... 215s Selecting previously unselected package r-cran-bitops. 215s Preparing to unpack .../241-r-cran-bitops_1.0-7-1_ppc64el.deb ... 215s Unpacking r-cran-bitops (1.0-7-1) ... 215s Selecting previously unselected package r-cran-catools. 215s Preparing to unpack .../242-r-cran-catools_1.18.2-1_ppc64el.deb ... 215s Unpacking r-cran-catools (1.18.2-1) ... 215s Selecting previously unselected package r-cran-mass. 215s Preparing to unpack .../243-r-cran-mass_7.3-60.0.1-1_ppc64el.deb ... 215s Unpacking r-cran-mass (7.3-60.0.1-1) ... 215s Selecting previously unselected package r-cran-kernsmooth. 215s Preparing to unpack .../244-r-cran-kernsmooth_2.23-22-1_ppc64el.deb ... 215s Unpacking r-cran-kernsmooth (2.23-22-1) ... 215s Selecting previously unselected package r-cran-gdata. 215s Preparing to unpack .../245-r-cran-gdata_3.0.0-1_all.deb ... 215s Unpacking r-cran-gdata (3.0.0-1) ... 215s Selecting previously unselected package r-cran-gplots. 215s Preparing to unpack .../246-r-cran-gplots_3.1.3.1-1_all.deb ... 215s Unpacking r-cran-gplots (3.1.3.1-1) ... 215s Selecting previously unselected package r-cran-rocr. 215s Preparing to unpack .../247-r-cran-rocr_1.0-11-2build1_all.deb ... 215s Unpacking r-cran-rocr (1.0-11-2build1) ... 216s Selecting previously unselected package murasaki-common. 216s Preparing to unpack .../248-murasaki-common_1.68.6-13build4_all.deb ... 216s Unpacking murasaki-common (1.68.6-13build4) ... 216s Selecting previously unselected package murasaki. 216s Preparing to unpack .../249-murasaki_1.68.6-13build4_ppc64el.deb ... 216s Unpacking murasaki (1.68.6-13build4) ... 216s Selecting previously unselected package murasaki-mpi. 216s Preparing to unpack .../250-murasaki-mpi_1.68.6-13build4_ppc64el.deb ... 216s Unpacking murasaki-mpi (1.68.6-13build4) ... 216s Selecting previously unselected package openmpi-common. 216s Preparing to unpack .../251-openmpi-common_4.1.6-5ubuntu1_all.deb ... 216s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 216s Selecting previously unselected package openmpi-bin. 216s Preparing to unpack .../252-openmpi-bin_4.1.6-5ubuntu1_ppc64el.deb ... 216s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 216s Selecting previously unselected package libibverbs-dev:ppc64el. 216s Preparing to unpack .../253-libibverbs-dev_50.0-2_ppc64el.deb ... 216s Unpacking libibverbs-dev:ppc64el (50.0-2) ... 216s Selecting previously unselected package libopenmpi-dev:ppc64el. 216s Preparing to unpack .../254-libopenmpi-dev_4.1.6-5ubuntu1_ppc64el.deb ... 216s Unpacking libopenmpi-dev:ppc64el (4.1.6-5ubuntu1) ... 216s Selecting previously unselected package autopkgtest-satdep. 216s Preparing to unpack .../255-1-autopkgtest-satdep.deb ... 216s Unpacking autopkgtest-satdep (0) ... 216s Setting up libgraphite2-3:ppc64el (1.3.14-2) ... 216s Setting up libxcb-dri3-0:ppc64el (1.15-1) ... 216s Setting up liblcms2-2:ppc64el (2.14-2) ... 216s Setting up libpixman-1-0:ppc64el (0.42.2-1) ... 216s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ... 216s Setting up libwayland-server0:ppc64el (1.22.0-2.1) ... 216s Setting up libpaper1:ppc64el (1.1.29) ... 216s 216s Creating config file /etc/papersize with new version 216s Setting up libx11-xcb1:ppc64el (2:1.8.7-1) ... 216s Setting up libpciaccess0:ppc64el (0.17-3) ... 216s Setting up imagemagick-6-common (8:6.9.12.98+dfsg1-5) ... 216s Setting up libdouble-conversion3:ppc64el (3.3.0-1) ... 216s Setting up libevent-extra-2.1-7:ppc64el (2.1.12-stable-9) ... 216s Setting up libdrm-nouveau2:ppc64el (2.4.120-2) ... 216s Setting up libxdamage1:ppc64el (1:1.1.6-1) ... 216s Setting up libxcb-xfixes0:ppc64el (1.15-1) ... 216s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 216s Setting up libxpm4:ppc64el (1:3.5.17-1) ... 216s Setting up hicolor-icon-theme (0.17-2) ... 216s Setting up libxi6:ppc64el (2:1.8.1-1) ... 216s Setting up libxcb-xinput0:ppc64el (1.15-1) ... 216s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ... 216s Setting up libdatrie1:ppc64el (0.2.13-3) ... 216s Setting up libxcb-render0:ppc64el (1.15-1) ... 216s Setting up libdrm-radeon1:ppc64el (2.4.120-2) ... 216s Setting up libglvnd0:ppc64el (1.7.0-1) ... 216s Setting up libboost-regex1.83.0:ppc64el (1.83.0-2ubuntu1) ... 216s Setting up libxcb-glx0:ppc64el (1.15-1) ... 216s Setting up unzip (6.0-28ubuntu3) ... 216s Setting up libboost-system1.83.0:ppc64el (1.83.0-2ubuntu1) ... 216s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 216s Setting up libxcb-keysyms1:ppc64el (0.4.0-1build3) ... 216s Setting up libxcb-shape0:ppc64el (1.15-1) ... 216s Setting up x11-common (1:7.7+23ubuntu2) ... 217s Setting up libdeflate0:ppc64el (1.19-1) ... 217s Setting up linux-libc-dev:ppc64el (6.8.0-11.11) ... 217s Setting up libevent-openssl-2.1-7:ppc64el (2.1.12-stable-9) ... 217s Setting up m4 (1.4.19-4) ... 217s Setting up libxcb-render-util0:ppc64el (0.3.9-1build3) ... 217s Setting up libxcb-shm0:ppc64el (1.15-1) ... 217s Setting up libxcb-icccm4:ppc64el (0.4.1-1.1build2) ... 217s Setting up libpaper-utils (1.1.29) ... 217s Setting up libtext-wrapper-perl (1.05-4) ... 217s Setting up libboost-filesystem1.83.0:ppc64el (1.83.0-2ubuntu1) ... 217s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ... 217s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ... 217s Setting up libpcre2-16-0:ppc64el (10.42-4ubuntu1) ... 217s Setting up libcolord2:ppc64el (1.4.7-1) ... 217s Setting up libxcb-util1:ppc64el (0.4.0-1build2) ... 217s Setting up libxxf86vm1:ppc64el (1:1.1.4-1build3) ... 217s Setting up libxcb-xkb1:ppc64el (1.15-1) ... 217s Setting up libxcb-image0:ppc64el (0.4.0-2) ... 217s Setting up libxnvctrl0:ppc64el (510.47.03-0ubuntu1) ... 217s Setting up libboost-atomic1.83.0:ppc64el (1.83.0-2ubuntu1) ... 217s Setting up libxcb-present0:ppc64el (1.15-1) ... 217s Setting up libdconf1:ppc64el (0.40.0-4) ... 217s Setting up libio-string-perl (1.08-4) ... 217s Setting up libqt5core5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 217s Setting up zip (3.0-13) ... 217s Setting up autotools-dev (20220109.1) ... 217s Setting up libpcre2-32-0:ppc64el (10.42-4ubuntu1) ... 217s Setting up libblas3:ppc64el (3.12.0-3) ... 217s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 217s Setting up libxcb-xinerama0:ppc64el (1.15-1) ... 217s Setting up libtirpc-dev:ppc64el (1.3.4+ds-1build1) ... 217s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 217s Setting up libmunge2:ppc64el (0.5.15-3ubuntu1) ... 217s Setting up libepoxy0:ppc64el (1.5.10-1) ... 217s Setting up libxfixes3:ppc64el (1:6.0.0-2) ... 217s Setting up libxcb-sync1:ppc64el (1.15-1) ... 217s Setting up libboost-iostreams1.83.0:ppc64el (1.83.0-2ubuntu1) ... 217s Setting up aglfn (1.7+git20191031.4036a9c-2) ... 217s Setting up libavahi-common-data:ppc64el (0.8-13ubuntu2) ... 217s Setting up libatspi2.0-0t64:ppc64el (2.51.90-3) ... 217s Setting up libquadmath0:ppc64el (14-20240303-1ubuntu1) ... 217s Setting up libxinerama1:ppc64el (2:1.1.4-3) ... 217s Setting up libxkbcommon-x11-0:ppc64el (1.6.0-1) ... 217s Setting up fonts-dejavu-mono (2.37-8) ... 217s Setting up libpng16-16t64:ppc64el (1.6.43-3) ... 217s Setting up libhwloc15:ppc64el (2.10.0-1) ... 217s Setting up libmpc3:ppc64el (1.3.1-1) ... 217s Setting up libcrypto++8t64:ppc64el (8.9.0-1.1) ... 217s Setting up libatomic1:ppc64el (14-20240303-1ubuntu1) ... 217s Setting up libevent-2.1-7:ppc64el (2.1.12-stable-9) ... 217s Setting up libxrandr2:ppc64el (2:1.5.2-2) ... 217s Setting up libtcl8.6:ppc64el (8.6.13+dfsg-2) ... 217s Setting up icu-devtools (74.2-1ubuntu1) ... 217s Setting up fonts-dejavu-core (2.37-8) ... 217s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 217s Setting up libltdl7:ppc64el (2.4.7-7) ... 217s Setting up libfftw3-double3:ppc64el (3.3.10-1ubuntu1) ... 217s Setting up libglapi-mesa:ppc64el (24.0.1-1ubuntu1) ... 217s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 217s Setting up libvulkan1:ppc64el (1.3.275.0-1) ... 217s Setting up autoconf (2.71-3) ... 217s Setting up libwebp7:ppc64el (1.3.2-0.4) ... 217s Setting up libubsan1:ppc64el (14-20240303-1ubuntu1) ... 217s Setting up libxcb-dri2-0:ppc64el (1.15-1) ... 217s Setting up libdata-stag-perl (0.14-3) ... 217s Setting up libdav1d7:ppc64el (1.4.0-1) ... 217s Setting up libnl-3-dev:ppc64el (3.7.0-0.3) ... 217s Setting up liblqr-1-0:ppc64el (0.4.2-2.1) ... 217s Setting up libmtdev1t64:ppc64el (1.1.6-1.1) ... 217s Setting up libnsl-dev:ppc64el (1.3.0-3) ... 217s Setting up ocl-icd-libopencl1:ppc64el (2.3.2-1) ... 217s Setting up libxshmfence1:ppc64el (1.3-1build4) ... 217s Setting up at-spi2-common (2.51.90-3) ... 217s Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ... 217s Setting up libxcb-randr0:ppc64el (1.15-1) ... 217s Setting up libasan8:ppc64el (14-20240303-1ubuntu1) ... 217s Setting up openmpi-common (4.1.6-5ubuntu1) ... 217s Setting up libmd4c0:ppc64el (0.4.8-1) ... 217s Setting up librdmacm1t64:ppc64el (50.0-2) ... 217s Setting up liblua5.4-0:ppc64el (5.4.6-3) ... 217s Setting up libopenjp2-7:ppc64el (2.5.0-2) ... 217s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ... 217s Setting up libthai-data (0.1.29-2) ... 217s Setting up libwayland-egl1:ppc64el (1.22.0-2.1) ... 217s Setting up libbio-perl-perl (1.7.8-1) ... 217s Setting up libxss1:ppc64el (1:1.2.3-1build2) ... 217s Setting up libtsan2:ppc64el (14-20240303-1ubuntu1) ... 217s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 217s Setting up libwxbase3.2-1t64:ppc64el (3.2.4+dfsg-3.1build1) ... 217s Setting up libterm-readkey-perl (2.38-2build2) ... 217s Setting up libisl23:ppc64el (0.26-3) ... 217s Setting up libde265-0:ppc64el (1.0.15-1) ... 217s Setting up libc-dev-bin (2.39-0ubuntu2) ... 217s Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 217s Setting up libwebpmux3:ppc64el (1.3.2-0.4) ... 217s Setting up libllvm17:ppc64el (1:17.0.6-5build1) ... 217s Setting up libxcomposite1:ppc64el (1:0.4.5-1build2) ... 217s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 217s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 217s Setting up libcc1-0:ppc64el (14-20240303-1ubuntu1) ... 217s Setting up liblsan0:ppc64el (14-20240303-1ubuntu1) ... 217s Setting up libitm1:ppc64el (14-20240303-1ubuntu1) ... 217s Setting up libevent-pthreads-2.1-7:ppc64el (2.1.12-stable-9) ... 217s Setting up libdrm-amdgpu1:ppc64el (2.4.120-2) ... 217s Setting up libwacom-common (2.10.0-1) ... 217s Setting up libwayland-client0:ppc64el (1.22.0-2.1) ... 217s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 217s Setting up automake (1:1.16.5-1.3ubuntu1) ... 217s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 217s Setting up libfabric1:ppc64el (1.17.0-3) ... 217s Setting up gnuplot-data (6.0.0+dfsg1-1ubuntu2) ... 217s Setting up libice6:ppc64el (2:1.0.10-1build2) ... 217s Setting up liblapack3:ppc64el (3.12.0-3) ... 217s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 217s Setting up libqt5dbus5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 217s Setting up libatk1.0-0t64:ppc64el (2.51.90-3) ... 217s Setting up libgbm1:ppc64el (24.0.1-1ubuntu1) ... 217s Setting up libwacom9:ppc64el (2.10.0-1) ... 217s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 217s Setting up libxtst6:ppc64el (2:1.2.3-1.1) ... 217s Setting up libwebpdemux2:ppc64el (1.3.2-0.4) ... 217s Setting up libxcursor1:ppc64el (1:1.2.1-1) ... 217s Setting up libcrypto++-dev:ppc64el (8.9.0-1.1) ... 217s Setting up libgl1-mesa-dri:ppc64el (24.0.1-1ubuntu1) ... 217s Setting up libqt5network5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 217s Setting up libavahi-common3:ppc64el (0.8-13ubuntu2) ... 217s Setting up dconf-service (0.40.0-4) ... 217s Setting up libhwloc-plugins:ppc64el (2.10.0-1) ... 217s Setting up libinput-bin (1.25.0-1) ... 217s Setting up libnl-route-3-dev:ppc64el (3.7.0-0.3) ... 217s Setting up libltdl-dev:ppc64el (2.4.7-7) ... 217s Setting up libthai0:ppc64el (0.1.29-2) ... 217s Setting up libegl-mesa0:ppc64el (24.0.1-1ubuntu1) ... 217s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 217s Setting up libevent-dev (2.1.12-stable-9) ... 217s Setting up libpstreams-dev (1.0.3-1) ... 217s Setting up libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ... 217s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 217s Setting up libwayland-cursor0:ppc64el (1.22.0-2.1) ... 217s Setting up libegl1:ppc64el (1.7.0-1) ... 217s Setting up libc6-dev:ppc64el (2.39-0ubuntu2) ... 217s Setting up libgdk-pixbuf-2.0-0:ppc64el (2.42.10+dfsg-3) ... 217s Setting up libamd-comgr2:ppc64el (6.0+git20231212.4510c28+dfsg-3) ... 217s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 217s Setting up libraw23:ppc64el (0.21.2-2) ... 217s Setting up libgfortran-13-dev:ppc64el (13.2.0-17ubuntu2) ... 217s Setting up libsm6:ppc64el (2:1.2.3-1build2) ... 217s Setting up libicu-dev:ppc64el (74.2-1ubuntu1) ... 217s Setting up libavahi-client3:ppc64el (0.8-13ubuntu2) ... 217s Setting up libhsakmt1:ppc64el (5.7.0-1) ... 217s Setting up libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ... 217s Setting up libatk-bridge2.0-0t64:ppc64el (2.51.90-3) ... 217s Setting up libinput10:ppc64el (1.25.0-1) ... 217s Setting up gtk-update-icon-cache (3.24.41-1.1ubuntu1) ... 217s Setting up fontconfig (2.15.0-1ubuntu1) ... 219s Regenerating fonts cache... done. 219s Setting up libxft2:ppc64el (2.3.6-1) ... 219s Setting up libboost1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 219s Setting up libglx-mesa0:ppc64el (24.0.1-1ubuntu1) ... 219s Setting up libglx0:ppc64el (1.7.0-1) ... 219s Setting up dconf-gsettings-backend:ppc64el (0.40.0-4) ... 219s Setting up libpmix2:ppc64el (5.0.1-4) ... 219s Setting up libtk8.6:ppc64el (8.6.13-2) ... 219s Setting up libpango-1.0-0:ppc64el (1.51.0+ds-4) ... 219s Setting up libibverbs-dev:ppc64el (50.0-2) ... 219s Setting up libcairo2:ppc64el (1.18.0-1) ... 219s Setting up libnuma-dev:ppc64el (2.0.18-1) ... 219s Setting up libgl1:ppc64el (1.7.0-1) ... 219s Setting up libnotify4:ppc64el (0.8.3-1) ... 219s Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 219s Setting up libgd3:ppc64el (2.3.3-9ubuntu1) ... 219s Setting up gcc-13 (13.2.0-17ubuntu2) ... 219s Setting up libboost-regex1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 219s Setting up libxt6:ppc64el (1:1.2.1-1.1) ... 219s Setting up libboost-atomic1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 219s Setting up libcups2:ppc64el (2.4.6-0ubuntu3) ... 219s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ... 219s Setting up libhsa-runtime64-1 (5.7.1-1) ... 219s Setting up libcairo-gobject2:ppc64el (1.18.0-1) ... 219s Setting up libhwloc-dev:ppc64el (2.10.0-1) ... 219s Setting up libboost-system1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 219s Setting up libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ... 219s Setting up libboost-regex-dev:ppc64el (1.83.0.1ubuntu2) ... 219s Setting up libpmix-dev:ppc64el (5.0.1-4) ... 219s Setting up libgtk-3-common (3.24.41-1.1ubuntu1) ... 219s Setting up libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ... 219s Setting up gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ... 219s Setting up libboost-iostreams1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 219s Setting up libboost-filesystem1.83-dev:ppc64el (1.83.0-2ubuntu1) ... 219s Setting up libboost-iostreams-dev:ppc64el (1.83.0.1ubuntu2) ... 219s Setting up libqt5gui5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 219s Setting up libamdhip64-5 (5.2.3-12) ... 219s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 219s Setting up r-base-core (4.3.2-1build1) ... 220s 220s Creating config file /etc/R/Renviron with new version 220s Setting up libboost-filesystem-dev:ppc64el (1.83.0.1ubuntu2) ... 220s Setting up libucx0:ppc64el (1.16.0+ds-4) ... 220s Setting up libqt5widgets5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 220s Setting up libopenmpi3:ppc64el (4.1.6-5ubuntu1) ... 220s Setting up libqt5svg5:ppc64el (5.15.12-1) ... 220s Setting up r-cran-mass (7.3-60.0.1-1) ... 220s Setting up r-cran-gtools (3.9.5-1) ... 220s Setting up r-cran-bitops (1.0-7-1) ... 220s Setting up r-cran-kernsmooth (2.23-22-1) ... 220s Setting up r-cran-catools (1.18.2-1) ... 220s Setting up r-cran-gdata (3.0.0-1) ... 220s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 220s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 220s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 220s Setting up libqt5printsupport5t64:ppc64el (5.15.12+dfsg-3ubuntu5) ... 220s Setting up libopenmpi-dev:ppc64el (4.1.6-5ubuntu1) ... 220s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/openmpi/include to provide /usr/include/powerpc64le-linux-gnu/mpi (mpi-powerpc64le-linux-gnu) in auto mode 220s Setting up r-cran-gplots (3.1.3.1-1) ... 220s Setting up r-cran-rocr (1.0-11-2build1) ... 220s Setting up adwaita-icon-theme (46~rc-1) ... 220s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 220s Setting up libheif-plugin-dav1d:ppc64el (1.17.6-1ubuntu1) ... 220s Setting up libheif-plugin-libde265:ppc64el (1.17.6-1ubuntu1) ... 220s Setting up libheif1:ppc64el (1.17.6-1ubuntu1) ... 220s Setting up libmagickcore-6.q16-7:ppc64el (8:6.9.12.98+dfsg1-5) ... 220s Setting up humanity-icon-theme (0.6.16) ... 220s Setting up libmagickwand-6.q16-7:ppc64el (8:6.9.12.98+dfsg1-5) ... 220s Setting up ubuntu-mono (24.04-0ubuntu1) ... 220s Setting up imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ... 220s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode 220s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode 220s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode 220s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode 220s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode 220s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode 220s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode 220s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode 220s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode 220s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode 220s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode 220s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode 220s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode 220s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode 220s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode 220s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode 220s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode 220s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode 220s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode 220s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode 220s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode 220s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode 220s Setting up imagemagick (8:6.9.12.98+dfsg1-5) ... 220s Processing triggers for install-info (7.1-3) ... 220s Processing triggers for libc-bin (2.39-0ubuntu2) ... 220s Processing triggers for man-db (2.12.0-3) ... 222s Processing triggers for libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 222s Setting up libgtk-3-0t64:ppc64el (3.24.41-1.1ubuntu1) ... 222s Processing triggers for udev (255.2-3ubuntu2) ... 223s Setting up libwxgtk3.2-1t64:ppc64el (3.2.4+dfsg-3.1build1) ... 223s Setting up gnuplot-qt (6.0.0+dfsg1-1ubuntu2) ... 223s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode 223s Setting up murasaki-common (1.68.6-13build4) ... 223s Setting up gnuplot (6.0.0+dfsg1-1ubuntu2) ... 223s Setting up murasaki (1.68.6-13build4) ... 223s Setting up murasaki-mpi (1.68.6-13build4) ... 223s Setting up autopkgtest-satdep (0) ... 223s Processing triggers for libc-bin (2.39-0ubuntu2) ... 231s (Reading database ... 112319 files and directories currently installed.) 231s Removing autopkgtest-satdep (0) ... 232s autopkgtest [02:35:20]: test run-unit-test: [----------------------- 232s Test Murasaki on NZ_GG705055.fna 232s Created output directory: /tmp/autopkgtest.oqrGR8/autopkgtest_tmp/output 232s Verbosity level is: 0 232s Writing to: output/test 232s Pattern is: 101 232s Max usable hash bits: 27 232s Hit filter is: 0 232s Hash table type is: EcoHash 232s Hashing every: 1 base 232s Histogram detail is: 0 232s Hashing function is: 3 232s Collision profiling is: disabled 232s Repeats are: unmasked 232s Mergefilter is at: 100 232s Random seed: 1710556520 (automatic) 232s Bitscore output: on 232s Leave status records: no 232s Join neighbors is: off 232s Target memory is: 1.24 GB 232s Retain members is: true 232s Store repeatmap? yes 232s Reverse complement data is generated on the fly 232s Rifts allowed: 0 232s Fuzzy Extension: yes 232s Score by minimum pair: yes 232s Gapped anchors: no 232s Large sequence support is: enabled => seqpos is 8 bytes 232s Murasaki version 1.68.6 (LARGESEQ) 232s Loading NZ_GG705055.fna 232s Read 398859bp (389.51 KBp) in 0.021 seconds (18.6 MBp/s) 232s Done with forward strand (410644bp). Preparing reverse complement... 232s <-> Reversing metdata. 232s Done. 232s Seq NZ_GG705055.fna loaded. 401.02 KB 232s Loading NZ_GG705055.gbk 232s Read 398859bp (389.51 KBp) in 0.029 seconds (13.3 MBp/s) 232s Done with forward strand (410644bp). Preparing reverse complement... 232s <-> Reversing metdata. 232s Done. 232s Seq NZ_GG705055.gbk loaded. 401.02 KB 232s Sequence loading took: 0.050 seconds 232s Forward frequencies: A:28.0367% C:23.1004% G:20.9036% T:27.9593% 232s Global base frequencies: A/T:55.996% C/G:44.004% 232s Pat: 3 bases long with weight 2 232s 1 101 232s Computing hash parameters... 232s Using 4 hashbits 232s 0%......... (T -0.134 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 10%......... (T -0.117 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 20%......... (T -0.101 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 30%......... (T -0.087 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 40%......... (T -0.072 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 60%......... (T -0.047 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 70%......... (T -0.031 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 80%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 91%........ 232s Acceptable hash function found after 1000 cycles. 232s Best uses 2/2 bases and has 0 empties from 2 inputs. 232s Score: 0.96875 (cf. worst: -4.51562) 232s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 232s Total correlation penalty: 0 232s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 232s 10 232s == 232s w[ 0]>>29: -.C 232s w[ 0]>>30: A.- 232s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 232s Ecolist (optimistic): Expcted entries per list: 17 232s Ecolist (optimistic): Minimum chunks per list: 2 232s Would take minimum 256.000000 bytes to make perfect hash. 232s Hashing 1.52 MB of sequence requires: 232s ~ linear (in seq length) hashing cost of 4.18 MB 232s ~ linear (in seq length) expected anchor cost of 37.60 MB 232s Initial hash table uses: 256 bytes (4 bits, 16 entries) 232s Expected memory usage (without anchors): 4.18 MB 232s Expected memory usage (with anchors): 41.78 MB 232s Hash parameters computed in 0.155 seconds 232s Creating storage structures: 16 entries in 256 bytes space. 232s Storage structures created in: 0.000 seconds 232s 232s Hashing NZ_GG705055.fna forwards 232s 0%......... (T -0.024 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 10%......... (T -0.025 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 20%......... (T -0.023 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 30%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 40%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 50%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 60%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 70%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 90%......... 232s Hashing NZ_GG705055.fna backwards 232s 0%......... (T -0.035 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 10%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 20%......... (T -0.026 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 30%......... (T -0.023 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 40%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 50%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 60%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 70%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 80%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 90%......... 232s Hashing NZ_GG705055.gbk forwards 232s 0%......... (T -0.033 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 10%......... (T -0.033 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 20%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 30%......... (T -0.026 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 40%......... (T -0.022 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 50%......... (T -0.018 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 60%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 70%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 80%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 90%......... 232s Hashing NZ_GG705055.gbk backwards 232s 0%......... (T -0.042 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 10%......... (T -0.038 seconds) ETA: Sat Mar 16 02:35:20 2024 232s 20%......... (T -0.034 seconds) ETA: Sat Mar 16 02:35:20 2024 233s 30%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:20 2024 233s 40%......... (T -0.024 seconds) ETA: Sat Mar 16 02:35:20 2024 233s 50%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:20 2024 233s 60%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:20 2024 233s 70%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:20 2024 233s 80%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:20 2024 233s 90%......... 233s Initial hashing took: 0.168 seconds 233s Extracting anchors from hash-space. 233s (T -1.603 seconds) ETA: Sat Mar 16 02:35:22 2024 233s 6%. (T -1.651 seconds) ETA: Sat Mar 16 02:35:23 2024 233s 18%. (T -1.292 seconds) ETA: Sat Mar 16 02:35:22 2024 233s 31%. (T -1.022 seconds) ETA: Sat Mar 16 02:35:22 2024 233s 43%. (T -0.703 seconds) ETA: Sat Mar 16 02:35:22 2024 234s 56%. (T -0.529 seconds) ETA: Sat Mar 16 02:35:22 2024 234s 68%. (T -0.308 seconds) ETA: Sat Mar 16 02:35:22 2024 234s 81%. (T -0.120 seconds) ETA: Sat Mar 16 02:35:22 2024 234s 93%. 234s Anchor extraction completed in: 1.694 seconds 234s Total anchors: 0 234s Anchor extraction + merge time: 1.695 seconds 234s Total processing time: 2.068 seconds 234s Writing anchors... 234s Total seeds used in anchors: 16 234s Hash performance: 234s Keys used: 16 out of 16 possible (100.00%). 234s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 234s Average pigeons per pigeon hole: 1 234s Writing 16 repeats...Output writing finished in: 0.246 seconds 234s Total time: 2.314 seconds 234s Murasaki finished! 234s PASSED MURASAKI 234s 234s Testing Genepare on NZ_GG705055.fna 234s 1001 234s PASSED GENEPARSE 234s 235s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 235s Testing mbfa on NZ_GG705055.fna 235s PASSED mbfa 235s 235s Test Murasaki on NZ_GG705056.fna 235s Verbosity level is: 0 235s Writing to: output/test 235s Pattern is: 101 235s Max usable hash bits: 27 235s Hit filter is: 0 235s Hash table type is: EcoHash 235s Hashing every: 1 base 235s Histogram detail is: 0 235s Hashing function is: 3 235s Collision profiling is: disabled 235s Repeats are: unmasked 235s Mergefilter is at: 100 235s Random seed: 1710556523 (automatic) 235s Bitscore output: on 235s Leave status records: no 235s Join neighbors is: off 235s Target memory is: 1.24 GB 235s Retain members is: true 235s Store repeatmap? yes 235s Reverse complement data is generated on the fly 235s Rifts allowed: 0 235s Fuzzy Extension: yes 235s Score by minimum pair: yes 235s Gapped anchors: no 235s Large sequence support is: enabled => seqpos is 8 bytes 235s Murasaki version 1.68.6 (LARGESEQ) 235s Loading NZ_GG705056.fna 235s Read 395160bp (385.90 KBp) in 0.020 seconds (18.8 MBp/s) 235s Done with forward strand (409732bp). Preparing reverse complement... 235s <-> Reversing metdata. 235s Done. 235s Seq NZ_GG705056.fna loaded. 400.13 KB 235s Loading NZ_GG705056.gbk 235s Read 395160bp (385.90 KBp) in 0.029 seconds (13.2 MBp/s) 235s Done with forward strand (409732bp). Preparing reverse complement... 235s <-> Reversing metdata. 235s Done. 235s Seq NZ_GG705056.gbk loaded. 400.13 KB 235s Sequence loading took: 0.049 seconds 235s Forward frequencies: A:28.3574% C:22.4405% G:20.4591% T:28.743% 235s Global base frequencies: A/T:57.1004% C/G:42.8996% 235s Pat: 3 bases long with weight 2 235s 1 101 235s Computing hash parameters... 235s Using 4 hashbits 235s 0%......... (T -0.132 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 10%......... (T -0.116 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 20%......... (T -0.101 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 30%......... (T -0.087 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 50%......... (T -0.058 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 70%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 91%........ 235s Acceptable hash function found after 1000 cycles. 235s Best uses 2/2 bases and has 0 empties from 2 inputs. 235s Score: 0.96875 (cf. worst: -4.51562) 235s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 235s Total correlation penalty: 0 235s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 235s 10 235s == 235s w[ 0]>>29: -.C 235s w[ 0]>>30: A.- 235s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 235s Ecolist (optimistic): Expcted entries per list: 17 235s Ecolist (optimistic): Minimum chunks per list: 2 235s Would take minimum 256.000000 bytes to make perfect hash. 235s Hashing 1.51 MB of sequence requires: 235s ~ linear (in seq length) hashing cost of 4.15 MB 235s ~ linear (in seq length) expected anchor cost of 37.51 MB 235s Initial hash table uses: 256 bytes (4 bits, 16 entries) 235s Expected memory usage (without anchors): 4.15 MB 235s Expected memory usage (with anchors): 41.66 MB 235s Hash parameters computed in 0.147 seconds 235s Creating storage structures: 16 entries in 256 bytes space. 235s Storage structures created in: 0.000 seconds 235s 235s Hashing NZ_GG705056.fna forwards 235s 0%......... (T -0.023 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 10%......... (T -0.025 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 20%......... (T -0.023 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 30%......... (T -0.021 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 40%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 50%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 60%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 70%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 80%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 90%......... 235s Hashing NZ_GG705056.fna backwards 235s 0%......... (T -0.035 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 10%......... (T -0.032 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 20%......... (T -0.028 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 30%......... (T -0.024 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 40%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 50%......... (T -0.016 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 60%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 70%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 80%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 90%......... 235s Hashing NZ_GG705056.gbk forwards 235s 0%......... (T -0.042 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 10%......... (T -0.034 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 20%......... (T -0.031 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 30%......... (T -0.026 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 40%......... (T -0.021 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 50%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 60%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 70%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 80%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 90%......... 235s Hashing NZ_GG705056.gbk backwards 235s 0%......... (T -0.043 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 10%......... (T -0.039 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 20%......... (T -0.035 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 30%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 40%......... (T -0.024 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 50%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 60%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 70%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 80%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:23 2024 235s 90%......... 235s Initial hashing took: 0.170 seconds 235s Extracting anchors from hash-space. 235s (T -1.634 seconds) ETA: Sat Mar 16 02:35:25 2024 235s 6%. (T -1.751 seconds) ETA: Sat Mar 16 02:35:25 2024 235s 18%. (T -1.215 seconds) ETA: Sat Mar 16 02:35:25 2024 236s 31%. (T -1.019 seconds) ETA: Sat Mar 16 02:35:25 2024 236s 43%. (T -0.751 seconds) ETA: Sat Mar 16 02:35:25 2024 236s 56%. (T -0.538 seconds) ETA: Sat Mar 16 02:35:25 2024 236s 68%. (T -0.304 seconds) ETA: Sat Mar 16 02:35:24 2024 237s 81%. (T -0.118 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 93%. 237s Anchor extraction completed in: 1.680 seconds 237s Total anchors: 0 237s Anchor extraction + merge time: 1.680 seconds 237s Total processing time: 2.047 seconds 237s Writing anchors... 237s Total seeds used in anchors: 16 237s Hash performance: 237s Keys used: 16 out of 16 possible (100.00%). 237s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 237s Average pigeons per pigeon hole: 1 237s Writing 16 repeats...Output writing finished in: 0.249 seconds 237s Total time: 2.295 seconds 237s Murasaki finished! 237s PASSED MURASAKI 237s 237s Testing Genepare on NZ_GG705056.fna 237s 1001 237s PASSED GENEPARSE 237s 237s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 237s Testing mbfa on NZ_GG705056.fna 237s PASSED mbfa 237s 237s Test Murasaki on NZ_GG705057.fna 237s Verbosity level is: 0 237s Writing to: output/test 237s Pattern is: 101 237s Max usable hash bits: 27 237s Hit filter is: 0 237s Hash table type is: EcoHash 237s Hashing every: 1 base 237s Histogram detail is: 0 237s Hashing function is: 3 237s Collision profiling is: disabled 237s Repeats are: unmasked 237s Mergefilter is at: 100 237s Random seed: 1710556525 (automatic) 237s Bitscore output: on 237s Leave status records: no 237s Join neighbors is: off 237s Target memory is: 1.24 GB 237s Retain members is: true 237s Store repeatmap? yes 237s Reverse complement data is generated on the fly 237s Rifts allowed: 0 237s Fuzzy Extension: yes 237s Score by minimum pair: yes 237s Gapped anchors: no 237s Large sequence support is: enabled => seqpos is 8 bytes 237s Murasaki version 1.68.6 (LARGESEQ) 237s Loading NZ_GG705057.fna 237s Read 295987bp (289.05 KBp) in 0.016 seconds (18.0 MBp/s) 237s Done with forward strand (304045bp). Preparing reverse complement... 237s <-> Reversing metdata. 237s Done. 237s Seq NZ_GG705057.fna loaded. 296.92 KB 237s Loading NZ_GG705057.gbk 237s Read 295987bp (289.05 KBp) in 0.022 seconds (13.0 MBp/s) 237s Done with forward strand (304045bp). Preparing reverse complement... 237s <-> Reversing metdata. 237s Done. 237s Seq NZ_GG705057.gbk loaded. 296.92 KB 237s Sequence loading took: 0.038 seconds 237s Forward frequencies: A:28.7229% C:20.2448% G:22.7206% T:28.3117% 237s Global base frequencies: A/T:57.0346% C/G:42.9654% 237s Pat: 3 bases long with weight 2 237s 1 101 237s Computing hash parameters... 237s Using 4 hashbits 237s 0%......... (T -0.132 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 20%......... (T -0.102 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 91%........ 237s Acceptable hash function found after 1000 cycles. 237s Best uses 2/2 bases and has 0 empties from 2 inputs. 237s Score: 0.96875 (cf. worst: -4.51562) 237s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 237s Total correlation penalty: 0 237s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 237s 10 237s == 237s w[ 0]>>29: -.C 237s w[ 0]>>30: A.- 237s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 237s Ecolist (optimistic): Expcted entries per list: 17 237s Ecolist (optimistic): Minimum chunks per list: 2 237s Would take minimum 256.000000 bytes to make perfect hash. 237s Hashing 1.13 MB of sequence requires: 237s ~ linear (in seq length) hashing cost of 3.11 MB 237s ~ linear (in seq length) expected anchor cost of 27.84 MB 237s Initial hash table uses: 256 bytes (4 bits, 16 entries) 237s Expected memory usage (without anchors): 3.11 MB 237s Expected memory usage (with anchors): 30.94 MB 237s Hash parameters computed in 0.149 seconds 237s Creating storage structures: 16 entries in 256 bytes space. 237s Storage structures created in: 0.000 seconds 237s 237s Hashing NZ_GG705057.fna forwards 237s 0%......... (T -0.026 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 10%......... (T -0.021 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 20%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 30%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 40%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 50%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 60%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 70%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 90%......... 237s Hashing NZ_GG705057.fna backwards 237s 0%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 10%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 20%......... (T -0.018 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 30%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 40%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 50%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 60%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 70%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 90%......... 237s Hashing NZ_GG705057.gbk forwards 237s 0%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 10%......... (T -0.027 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 20%......... (T -0.024 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 30%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 40%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 50%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 60%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 70%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 90%......... 237s Hashing NZ_GG705057.gbk backwards 237s 0%......... (T -0.032 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 10%......... (T -0.028 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 20%......... (T -0.024 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 30%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 40%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 50%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 60%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 70%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 80%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:25 2024 237s 90%......... 237s Initial hashing took: 0.128 seconds 237s Extracting anchors from hash-space. 237s (T -1.264 seconds) ETA: Sat Mar 16 02:35:27 2024 237s 6%. (T -0.948 seconds) ETA: Sat Mar 16 02:35:26 2024 238s 18%. (T -0.852 seconds) ETA: Sat Mar 16 02:35:26 2024 238s 31%. (T -0.715 seconds) ETA: Sat Mar 16 02:35:26 2024 238s 43%. (T -0.591 seconds) ETA: Sat Mar 16 02:35:27 2024 238s 56%. (T -0.425 seconds) ETA: Sat Mar 16 02:35:27 2024 238s 68%. (T -0.255 seconds) ETA: Sat Mar 16 02:35:27 2024 238s 81%. (T -0.089 seconds) ETA: Sat Mar 16 02:35:26 2024 238s 93%. 238s Anchor extraction completed in: 1.265 seconds 238s Total anchors: 0 238s Anchor extraction + merge time: 1.265 seconds 238s Total processing time: 1.580 seconds 238s Writing anchors... 238s Total seeds used in anchors: 16 238s Hash performance: 238s Keys used: 16 out of 16 possible (100.00%). 238s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 238s Average pigeons per pigeon hole: 1 239s Writing 16 repeats...Output writing finished in: 0.238 seconds 239s Total time: 1.818 seconds 239s Murasaki finished! 239s PASSED MURASAKI 239s 239s Testing Genepare on NZ_GG705057.fna 239s 1001 239s PASSED GENEPARSE 239s 239s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 239s Testing mbfa on NZ_GG705057.fna 239s PASSED mbfa 239s 239s Test Murasaki on NZ_GG705058.fna 239s Verbosity level is: 0 239s Writing to: output/test 239s Pattern is: 101 239s Max usable hash bits: 27 239s Hit filter is: 0 239s Hash table type is: EcoHash 239s Hashing every: 1 base 239s Histogram detail is: 0 239s Hashing function is: 3 239s Collision profiling is: disabled 239s Repeats are: unmasked 239s Mergefilter is at: 100 239s Random seed: 1710556527 (automatic) 239s Bitscore output: on 239s Leave status records: no 239s Join neighbors is: off 239s Target memory is: 1.24 GB 239s Retain members is: true 239s Store repeatmap? yes 239s Reverse complement data is generated on the fly 239s Rifts allowed: 0 239s Fuzzy Extension: yes 239s Score by minimum pair: yes 239s Gapped anchors: no 239s Large sequence support is: enabled => seqpos is 8 bytes 239s Murasaki version 1.68.6 (LARGESEQ) 239s Loading NZ_GG705058.fna 239s Read 261113bp (254.99 KBp) in 0.014 seconds (18.0 MBp/s) 239s Done with forward strand (268087bp). Preparing reverse complement... 239s <-> Reversing metdata. 239s Done. 239s Seq NZ_GG705058.fna loaded. 261.80 KB 239s Loading NZ_GG705058.gbk 239s Read 261113bp (254.99 KBp) in 0.019 seconds (13.4 MBp/s) 239s Done with forward strand (268087bp). Preparing reverse complement... 239s <-> Reversing metdata. 239s Done. 239s Seq NZ_GG705058.gbk loaded. 261.80 KB 239s Sequence loading took: 0.033 seconds 239s Forward frequencies: A:29.3149% C:19.6057% G:21.8568% T:29.2226% 239s Global base frequencies: A/T:58.5375% C/G:41.4625% 239s Pat: 3 bases long with weight 2 239s 1 101 239s Computing hash parameters... 239s Using 4 hashbits 239s 0%......... (T -0.138 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 20%......... (T -0.104 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 91%........ 239s Acceptable hash function found after 1000 cycles. 239s Best uses 2/2 bases and has 0 empties from 2 inputs. 239s Score: 0.96875 (cf. worst: -4.51562) 239s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 239s Total correlation penalty: 0 239s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 239s 10 239s == 239s w[ 0]>>29: -.C 239s w[ 0]>>30: A.- 239s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 239s Ecolist (optimistic): Expcted entries per list: 16 239s Ecolist (optimistic): Minimum chunks per list: 2 239s Would take minimum 256.000000 bytes to make perfect hash. 239s Hashing 1019.97 KB of sequence requires: 239s ~ linear (in seq length) hashing cost of 2.74 MB 239s ~ linear (in seq length) expected anchor cost of 24.54 MB 239s Initial hash table uses: 256 bytes (4 bits, 16 entries) 239s Expected memory usage (without anchors): 2.74 MB 239s Expected memory usage (with anchors): 27.28 MB 239s Hash parameters computed in 0.150 seconds 239s Creating storage structures: 16 entries in 256 bytes space. 239s Storage structures created in: 0.000 seconds 239s 239s Hashing NZ_GG705058.fna forwards 239s 0%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 10%......... (T -0.018 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 20%......... (T -0.016 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 30%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 40%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 50%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 60%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 70%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 90%......... 239s Hashing NZ_GG705058.fna backwards 239s 0%......... (T -0.026 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 10%......... (T -0.021 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 20%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 30%......... (T -0.016 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 40%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 50%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 60%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 70%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 90%......... 239s Hashing NZ_GG705058.gbk forwards 239s 0%......... (T -0.027 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 10%......... (T -0.023 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 20%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 30%......... (T -0.016 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 40%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 50%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 60%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 70%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 90%......... 239s Hashing NZ_GG705058.gbk backwards 239s 0%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 10%......... (T -0.026 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 20%......... (T -0.023 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 30%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 40%......... (T -0.016 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 50%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 60%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 70%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:27 2024 239s 90%......... 239s Initial hashing took: 0.116 seconds 239s Extracting anchors from hash-space. 239s (T -0.971 seconds) ETA: Sat Mar 16 02:35:28 2024 239s 6%. (T -1.185 seconds) ETA: Sat Mar 16 02:35:29 2024 239s 18%. (T -0.803 seconds) ETA: Sat Mar 16 02:35:28 2024 240s 31%. (T -0.652 seconds) ETA: Sat Mar 16 02:35:28 2024 240s 43%. (T -0.469 seconds) ETA: Sat Mar 16 02:35:28 2024 240s 56%. (T -0.340 seconds) ETA: Sat Mar 16 02:35:28 2024 240s 68%. (T -0.192 seconds) ETA: Sat Mar 16 02:35:28 2024 240s 81%. (T -0.076 seconds) ETA: Sat Mar 16 02:35:28 2024 240s 93%. 240s Anchor extraction completed in: 1.084 seconds 240s Total anchors: 0 240s Anchor extraction + merge time: 1.085 seconds 240s Total processing time: 1.384 seconds 240s Writing anchors... 240s Total seeds used in anchors: 16 240s Hash performance: 240s Keys used: 16 out of 16 possible (100.00%). 240s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 240s Average pigeons per pigeon hole: 1 240s Writing 16 repeats...Output writing finished in: 0.162 seconds 240s Total time: 1.546 seconds 240s Murasaki finished! 240s PASSED MURASAKI 240s 240s Testing Genepare on NZ_GG705058.fna 240s 1001 240s PASSED GENEPARSE 240s 240s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 240s Testing mbfa on NZ_GG705058.fna 240s PASSED mbfa 240s 240s Test Murasaki on NZ_GG705059.fna 240s Verbosity level is: 0 240s Writing to: output/test 240s Pattern is: 101 240s Max usable hash bits: 27 240s Hit filter is: 0 240s Hash table type is: EcoHash 240s Hashing every: 1 base 240s Histogram detail is: 0 240s Hashing function is: 3 240s Collision profiling is: disabled 240s Repeats are: unmasked 240s Mergefilter is at: 100 240s Random seed: 1710556528 (automatic) 240s Bitscore output: on 240s Leave status records: no 240s Join neighbors is: off 240s Target memory is: 1.24 GB 240s Retain members is: true 240s Store repeatmap? yes 240s Reverse complement data is generated on the fly 240s Rifts allowed: 0 240s Fuzzy Extension: yes 240s Score by minimum pair: yes 240s Gapped anchors: no 240s Large sequence support is: enabled => seqpos is 8 bytes 240s Murasaki version 1.68.6 (LARGESEQ) 240s Loading NZ_GG705059.fna 240s Read 254292bp (248.33 KBp) in 0.014 seconds (17.9 MBp/s) 240s Done with forward strand (263842bp). Preparing reverse complement... 240s <-> Reversing metdata. 240s Done. 240s Seq NZ_GG705059.fna loaded. 257.66 KB 240s Loading NZ_GG705059.gbk 240s Read 254292bp (248.33 KBp) in 0.019 seconds (12.6 MBp/s) 240s Done with forward strand (263842bp). Preparing reverse complement... 240s <-> Reversing metdata. 240s Done. 240s Seq NZ_GG705059.gbk loaded. 257.66 KB 240s Sequence loading took: 0.033 seconds 240s Forward frequencies: A:28.2899% C:22.6452% G:20.7128% T:28.3521% 240s Global base frequencies: A/T:56.642% C/G:43.358% 240s Pat: 3 bases long with weight 2 240s 1 101 240s Computing hash parameters... 240s Using 4 hashbits 240s 0%......... (T -0.135 seconds) ETA: Sat Mar 16 02:35:29 2024 240s 10%......... (T -0.119 seconds) ETA: Sat Mar 16 02:35:29 2024 240s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 91%........ 241s Acceptable hash function found after 1000 cycles. 241s Best uses 2/2 bases and has 0 empties from 2 inputs. 241s Score: 0.96875 (cf. worst: -4.51562) 241s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 241s Total correlation penalty: 0 241s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 241s 10 241s == 241s w[ 0]>>29: -.C 241s w[ 0]>>30: A.- 241s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1) 241s Ecolist (optimistic): Expcted entries per list: 16 241s Ecolist (optimistic): Minimum chunks per list: 2 241s Would take minimum 256.000000 bytes to make perfect hash. 241s Hashing 993.33 KB of sequence requires: 241s ~ linear (in seq length) hashing cost of 2.67 MB 241s ~ linear (in seq length) expected anchor cost of 24.16 MB 241s Initial hash table uses: 256 bytes (4 bits, 16 entries) 241s Expected memory usage (without anchors): 2.67 MB 241s Expected memory usage (with anchors): 26.82 MB 241s Hash parameters computed in 0.149 seconds 241s Creating storage structures: 16 entries in 256 bytes space. 241s Storage structures created in: 0.000 seconds 241s 241s Hashing NZ_GG705059.fna forwards 241s 0%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 10%......... (T -0.018 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 20%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 30%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 40%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 50%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 60%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 70%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 90%......... 241s Hashing NZ_GG705059.fna backwards 241s 0%......... (T -0.026 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 10%......... (T -0.022 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 20%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 30%......... (T -0.016 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 40%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 50%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 60%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 70%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 90%......... 241s Hashing NZ_GG705059.gbk forwards 241s 0%......... (T -0.027 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 10%......... (T -0.023 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 20%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 30%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 40%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 50%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 60%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 70%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 90%......... 241s Hashing NZ_GG705059.gbk backwards 241s 0%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 10%......... (T -0.024 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 20%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 30%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 40%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 50%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 60%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 70%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 90%......... 241s Initial hashing took: 0.109 seconds 241s Extracting anchors from hash-space. 241s (T -0.581 seconds) ETA: Sat Mar 16 02:35:29 2024 241s 6%. (T -0.695 seconds) ETA: Sat Mar 16 02:35:30 2024 241s 18%. (T -0.633 seconds) ETA: Sat Mar 16 02:35:30 2024 241s 31%. (T -0.608 seconds) ETA: Sat Mar 16 02:35:30 2024 241s 43%. (T -0.454 seconds) ETA: Sat Mar 16 02:35:30 2024 241s 56%. (T -0.355 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 68%. (T -0.204 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 81%. (T -0.076 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 93%. 242s Anchor extraction completed in: 1.050 seconds 242s Total anchors: 0 242s Anchor extraction + merge time: 1.050 seconds 242s Total processing time: 1.342 seconds 242s Writing anchors... 242s Total seeds used in anchors: 16 242s Hash performance: 242s Keys used: 16 out of 16 possible (100.00%). 242s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 242s Average pigeons per pigeon hole: 1 242s Writing 16 repeats...Output writing finished in: 0.158 seconds 242s Total time: 1.500 seconds 242s Murasaki finished! 242s PASSED MURASAKI 242s 242s Testing Genepare on NZ_GG705059.fna 242s 1001 242s PASSED GENEPARSE 242s 242s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 242s Testing mbfa on NZ_GG705059.fna 242s PASSED mbfa 242s 242s Test Murasaki on NZ_GG705060.fna 242s Verbosity level is: 0 242s Writing to: output/test 242s Pattern is: 101 242s Max usable hash bits: 27 242s Hit filter is: 0 242s Hash table type is: EcoHash 242s Hashing every: 1 base 242s Histogram detail is: 0 242s Hashing function is: 3 242s Collision profiling is: disabled 242s Repeats are: unmasked 242s Mergefilter is at: 100 242s Random seed: 1710556530 (automatic) 242s Bitscore output: on 242s Leave status records: no 242s Join neighbors is: off 242s Target memory is: 1.24 GB 242s Retain members is: true 242s Store repeatmap? yes 242s Reverse complement data is generated on the fly 242s Rifts allowed: 0 242s Fuzzy Extension: yes 242s Score by minimum pair: yes 242s Gapped anchors: no 242s Large sequence support is: enabled => seqpos is 8 bytes 242s Murasaki version 1.68.6 (LARGESEQ) 242s Loading NZ_GG705060.fna 242s Read 250160bp (244.30 KBp) in 0.014 seconds (17.7 MBp/s) 242s Done with forward strand (261824bp). Preparing reverse complement... 242s <-> Reversing metdata. 242s Done. 242s Seq NZ_GG705060.fna loaded. 255.69 KB 242s Loading NZ_GG705060.gbk 242s Read 250160bp (244.30 KBp) in 0.022 seconds (10.9 MBp/s) 242s Done with forward strand (261824bp). Preparing reverse complement... 242s <-> Reversing metdata. 242s Done. 242s Seq NZ_GG705060.gbk loaded. 255.69 KB 242s Sequence loading took: 0.036 seconds 242s Forward frequencies: A:28.3151% C:22.1794% G:20.8447% T:28.6609% 242s Global base frequencies: A/T:56.9759% C/G:43.0241% 242s Pat: 3 bases long with weight 2 242s 1 101 242s Computing hash parameters... 242s Using 4 hashbits 242s 0%......... (T -0.134 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 91%........ 242s Acceptable hash function found after 1000 cycles. 242s Best uses 2/2 bases and has 0 empties from 2 inputs. 242s Score: 0.96875 (cf. worst: -4.51562) 242s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 242s Total correlation penalty: 0 242s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 242s 10 242s == 242s w[ 0]>>29: -.C 242s w[ 0]>>30: A.- 242s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 242s Ecolist (optimistic): Expcted entries per list: 16 242s Ecolist (optimistic): Minimum chunks per list: 3 242s Would take minimum 256.000000 bytes to make perfect hash. 242s Hashing 977.19 KB of sequence requires: 242s ~ linear (in seq length) hashing cost of 2.50 MB 242s ~ linear (in seq length) expected anchor cost of 23.97 MB 242s Initial hash table uses: 256 bytes (4 bits, 16 entries) 242s Expected memory usage (without anchors): 2.51 MB 242s Expected memory usage (with anchors): 26.48 MB 242s Hash parameters computed in 0.170 seconds 242s Creating storage structures: 16 entries in 256 bytes space. 242s Storage structures created in: 0.000 seconds 242s 242s Hashing NZ_GG705060.fna forwards 242s 0%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 10%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 20%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 30%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 40%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 50%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 60%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 70%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 90%......... 242s Hashing NZ_GG705060.fna backwards 242s 0%......... (T -0.025 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 10%......... (T -0.021 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 20%......... (T -0.018 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 30%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 40%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 50%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 60%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 70%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 90%......... 242s Hashing NZ_GG705060.gbk forwards 242s 0%......... (T -0.023 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 10%......... (T -0.021 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 20%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 30%......... (T -0.016 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 40%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 50%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 60%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 70%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 90%......... 242s Hashing NZ_GG705060.gbk backwards 242s 0%......... (T -0.027 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 10%......... (T -0.023 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 20%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 30%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 40%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 50%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 60%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 70%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:30 2024 242s 90%......... 242s Initial hashing took: 0.100 seconds 242s Extracting anchors from hash-space. 242s (T -0.592 seconds) ETA: Sat Mar 16 02:35:31 2024 242s 6%. (T -0.589 seconds) ETA: Sat Mar 16 02:35:31 2024 242s 18%. (T -0.440 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 31%. (T -0.426 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 43%. (T -0.319 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 56%. (T -0.248 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 68%. (T -0.139 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 81%. (T -0.050 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 93%. 243s Anchor extraction completed in: 0.714 seconds 243s Total anchors: 0 243s Anchor extraction + merge time: 0.714 seconds 243s Total processing time: 1.021 seconds 243s Writing anchors... 243s Total seeds used in anchors: 16 243s Hash performance: 243s Keys used: 16 out of 16 possible (100.00%). 243s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 243s Average pigeons per pigeon hole: 1 243s Writing 16 repeats...Output writing finished in: 0.156 seconds 243s Total time: 1.177 seconds 243s Murasaki finished! 243s PASSED MURASAKI 243s 243s Testing Genepare on NZ_GG705060.fna 243s 1001 243s PASSED GENEPARSE 243s 243s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 243s Testing mbfa on NZ_GG705060.fna 243s PASSED mbfa 243s 243s Test Murasaki on NZ_GG705061.fna 243s Verbosity level is: 0 243s Writing to: output/test 243s Pattern is: 101 243s Max usable hash bits: 27 243s Hit filter is: 0 243s Hash table type is: EcoHash 243s Hashing every: 1 base 243s Histogram detail is: 0 243s Hashing function is: 3 243s Collision profiling is: disabled 243s Repeats are: unmasked 243s Mergefilter is at: 100 243s Random seed: 1710556531 (automatic) 243s Bitscore output: on 243s Leave status records: no 243s Join neighbors is: off 243s Target memory is: 1.24 GB 243s Retain members is: true 243s Store repeatmap? yes 243s Reverse complement data is generated on the fly 243s Rifts allowed: 0 243s Fuzzy Extension: yes 243s Score by minimum pair: yes 243s Gapped anchors: no 243s Large sequence support is: enabled => seqpos is 8 bytes 243s Murasaki version 1.68.6 (LARGESEQ) 243s Loading NZ_GG705061.fna 243s Read 229103bp (223.73 KBp) in 0.012 seconds (18.3 MBp/s) 243s Done with forward strand (233240bp). Preparing reverse complement... 243s <-> Reversing metdata. 243s Done. 243s Seq NZ_GG705061.fna loaded. 227.77 KB 243s Loading NZ_GG705061.gbk 243s Read 229103bp (223.73 KBp) in 0.016 seconds (13.3 MBp/s) 243s Done with forward strand (233240bp). Preparing reverse complement... 243s <-> Reversing metdata. 243s Done. 243s Seq NZ_GG705061.gbk loaded. 227.77 KB 243s Sequence loading took: 0.029 seconds 243s Forward frequencies: A:28.2371% C:22.8212% G:21.0028% T:27.939% 243s Global base frequencies: A/T:56.176% C/G:43.824% 243s Pat: 3 bases long with weight 2 243s 1 101 243s Computing hash parameters... 243s Using 4 hashbits 243s 0%......... (T -0.132 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 20%......... (T -0.106 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 91%........ 243s Acceptable hash function found after 1000 cycles. 243s Best uses 2/2 bases and has 0 empties from 2 inputs. 243s Score: 0.96875 (cf. worst: -4.51562) 243s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 243s Total correlation penalty: 0 243s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 243s 10 243s == 243s w[ 0]>>29: -.C 243s w[ 0]>>30: A.- 243s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 243s Ecolist (optimistic): Expcted entries per list: 16 243s Ecolist (optimistic): Minimum chunks per list: 3 243s Would take minimum 256.000000 bytes to make perfect hash. 243s Hashing 894.93 KB of sequence requires: 243s ~ linear (in seq length) hashing cost of 2.29 MB 243s ~ linear (in seq length) expected anchor cost of 21.35 MB 243s Initial hash table uses: 256 bytes (4 bits, 16 entries) 243s Expected memory usage (without anchors): 2.29 MB 243s Expected memory usage (with anchors): 23.65 MB 243s Hash parameters computed in 0.150 seconds 243s Creating storage structures: 16 entries in 256 bytes space. 243s Storage structures created in: 0.000 seconds 243s 243s Hashing NZ_GG705061.fna forwards 243s 0%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 10%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 20%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 30%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 40%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 50%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 60%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 70%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 90%......... 243s Hashing NZ_GG705061.fna backwards 243s 0%......... (T -0.027 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 10%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 20%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 30%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 40%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 50%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 60%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 70%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 90%......... 243s Hashing NZ_GG705061.gbk forwards 243s 0%......... (T -0.025 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 10%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 20%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 30%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 40%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 50%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 60%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 70%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 90%......... 243s Hashing NZ_GG705061.gbk backwards 243s 0%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 10%......... (T -0.023 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 20%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 30%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 40%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 50%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 60%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 70%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 80%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:31 2024 243s 90%......... 243s Initial hashing took: 0.099 seconds 243s Extracting anchors from hash-space. 244s (T -0.947 seconds) ETA: Sat Mar 16 02:35:32 2024 244s 6%. (T -0.999 seconds) ETA: Sat Mar 16 02:35:33 2024 244s 18%. (T -0.717 seconds) ETA: Sat Mar 16 02:35:33 2024 244s 31%. (T -0.589 seconds) ETA: Sat Mar 16 02:35:32 2024 244s 43%. (T -0.405 seconds) ETA: Sat Mar 16 02:35:32 2024 244s 56%. (T -0.291 seconds) ETA: Sat Mar 16 02:35:32 2024 244s 68%. (T -0.172 seconds) ETA: Sat Mar 16 02:35:32 2024 244s 81%. (T -0.067 seconds) ETA: Sat Mar 16 02:35:32 2024 244s 93%. 244s Anchor extraction completed in: 0.942 seconds 244s Total anchors: 0 244s Anchor extraction + merge time: 0.942 seconds 244s Total processing time: 1.221 seconds 244s Writing anchors... 244s Total seeds used in anchors: 16 244s Hash performance: 244s Keys used: 16 out of 16 possible (100.00%). 244s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 244s Average pigeons per pigeon hole: 1 245s Writing 16 repeats...Output writing finished in: 0.145 seconds 245s Total time: 1.366 seconds 245s Murasaki finished! 245s PASSED MURASAKI 245s 245s Testing Genepare on NZ_GG705061.fna 245s 1001 245s PASSED GENEPARSE 245s 245s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 245s Testing mbfa on NZ_GG705061.fna 245s PASSED mbfa 245s 245s Test Murasaki on NZ_GG705062.fna 245s Verbosity level is: 0 245s Writing to: output/test 245s Pattern is: 101 245s Max usable hash bits: 27 245s Hit filter is: 0 245s Hash table type is: EcoHash 245s Hashing every: 1 base 245s Histogram detail is: 0 245s Hashing function is: 3 245s Collision profiling is: disabled 245s Repeats are: unmasked 245s Mergefilter is at: 100 245s Random seed: 1710556533 (automatic) 245s Bitscore output: on 245s Leave status records: no 245s Join neighbors is: off 245s Target memory is: 1.24 GB 245s Retain members is: true 245s Store repeatmap? yes 245s Reverse complement data is generated on the fly 245s Rifts allowed: 0 245s Fuzzy Extension: yes 245s Score by minimum pair: yes 245s Gapped anchors: no 245s Large sequence support is: enabled => seqpos is 8 bytes 245s Murasaki version 1.68.6 (LARGESEQ) 245s Loading NZ_GG705062.fna 245s Read 174324bp (170.24 KBp) in 0.009 seconds (17.7 MBp/s) 245s Done with forward strand (181688bp). Preparing reverse complement... 245s <-> Reversing metdata. 245s Done. 245s Seq NZ_GG705062.fna loaded. 177.43 KB 245s Loading NZ_GG705062.gbk 245s Read 174324bp (170.24 KBp) in 0.013 seconds (13.0 MBp/s) 245s Done with forward strand (181688bp). Preparing reverse complement... 245s <-> Reversing metdata. 245s Done. 245s Seq NZ_GG705062.gbk loaded. 177.43 KB 245s Sequence loading took: 0.023 seconds 245s Forward frequencies: A:28.8004% C:19.6749% G:21.6212% T:29.9035% 245s Global base frequencies: A/T:58.7039% C/G:41.2961% 245s Pat: 3 bases long with weight 2 245s 1 101 245s Computing hash parameters... 245s Using 4 hashbits 245s 0%......... (T -0.130 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 10%......... (T -0.116 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 20%......... (T -0.102 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 70%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 91%........ 245s Acceptable hash function found after 1000 cycles. 245s Best uses 2/2 bases and has 0 empties from 2 inputs. 245s Score: 0.96875 (cf. worst: -4.51562) 245s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 245s Total correlation penalty: 0 245s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 245s 10 245s == 245s w[ 0]>>29: -.C 245s w[ 0]>>30: A.- 245s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 245s Ecolist (optimistic): Expcted entries per list: 16 245s Ecolist (optimistic): Minimum chunks per list: 3 245s Would take minimum 256.000000 bytes to make perfect hash. 245s Hashing 680.95 KB of sequence requires: 245s ~ linear (in seq length) hashing cost of 1.75 MB 245s ~ linear (in seq length) expected anchor cost of 16.63 MB 245s Initial hash table uses: 256 bytes (4 bits, 16 entries) 245s Expected memory usage (without anchors): 1.75 MB 245s Expected memory usage (with anchors): 18.38 MB 245s Hash parameters computed in 0.148 seconds 245s Creating storage structures: 16 entries in 256 bytes space. 245s Storage structures created in: 0.000 seconds 245s 245s Hashing NZ_GG705062.fna forwards 245s 0%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 10%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 20%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 30%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 40%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 50%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 60%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 90%......... 245s Hashing NZ_GG705062.fna backwards 245s 0%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 10%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 20%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 30%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 40%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 50%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 60%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 70%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 90%......... 245s Hashing NZ_GG705062.gbk forwards 245s 0%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 10%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 20%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 30%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 40%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 50%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 60%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 70%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 90%......... 245s Hashing NZ_GG705062.gbk backwards 245s 0%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 10%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 20%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 30%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 40%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 50%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 60%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 70%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:33 2024 245s 90%......... 245s Initial hashing took: 0.075 seconds 245s Extracting anchors from hash-space. 245s (T -0.780 seconds) ETA: Sat Mar 16 02:35:34 2024 245s 6%. (T -0.789 seconds) ETA: Sat Mar 16 02:35:34 2024 245s 18%. (T -0.528 seconds) ETA: Sat Mar 16 02:35:34 2024 245s 31%. (T -0.425 seconds) ETA: Sat Mar 16 02:35:34 2024 245s 43%. (T -0.307 seconds) ETA: Sat Mar 16 02:35:34 2024 245s 56%. (T -0.223 seconds) ETA: Sat Mar 16 02:35:34 2024 245s 68%. (T -0.126 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 81%. (T -0.050 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 93%. 246s Anchor extraction completed in: 0.700 seconds 246s Total anchors: 0 246s Anchor extraction + merge time: 0.700 seconds 246s Total processing time: 0.947 seconds 246s Writing anchors... 246s Total seeds used in anchors: 16 246s Hash performance: 246s Keys used: 16 out of 16 possible (100.00%). 246s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 246s Average pigeons per pigeon hole: 1 246s Writing 16 repeats...Output writing finished in: 0.109 seconds 246s Total time: 1.057 seconds 246s Murasaki finished! 246s PASSED MURASAKI 246s 246s Testing Genepare on NZ_GG705062.fna 246s 1001 246s PASSED GENEPARSE 246s 246s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 246s Testing mbfa on NZ_GG705062.fna 246s PASSED mbfa 246s 246s Test Murasaki on NZ_GG705063.fna 246s Verbosity level is: 0 246s Writing to: output/test 246s Pattern is: 101 246s Max usable hash bits: 27 246s Hit filter is: 0 246s Hash table type is: EcoHash 246s Hashing every: 1 base 246s Histogram detail is: 0 246s Hashing function is: 3 246s Collision profiling is: disabled 246s Repeats are: unmasked 246s Mergefilter is at: 100 246s Random seed: 1710556534 (automatic) 246s Bitscore output: on 246s Leave status records: no 246s Join neighbors is: off 246s Target memory is: 1.24 GB 246s Retain members is: true 246s Store repeatmap? yes 246s Reverse complement data is generated on the fly 246s Rifts allowed: 0 246s Fuzzy Extension: yes 246s Score by minimum pair: yes 246s Gapped anchors: no 246s Large sequence support is: enabled => seqpos is 8 bytes 246s Murasaki version 1.68.6 (LARGESEQ) 246s Loading NZ_GG705063.fna 246s Read 169631bp (165.66 KBp) in 0.009 seconds (18.0 MBp/s) 246s Done with forward strand (171684bp). Preparing reverse complement... 246s <-> Reversing metdata. 246s Done. 246s Seq NZ_GG705063.fna loaded. 167.66 KB 246s Loading NZ_GG705063.gbk 246s Read 169631bp (165.66 KBp) in 0.012 seconds (13.3 MBp/s) 246s Done with forward strand (171684bp). Preparing reverse complement... 246s <-> Reversing metdata. 246s Done. 246s Seq NZ_GG705063.gbk loaded. 167.66 KB 246s Sequence loading took: 0.022 seconds 246s Forward frequencies: A:27.9294% C:20.6572% G:23.2847% T:28.1287% 246s Global base frequencies: A/T:56.0581% C/G:43.9419% 246s Pat: 3 bases long with weight 2 246s 1 101 246s Computing hash parameters... 246s Using 4 hashbits 246s 0%......... (T -0.133 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 10%......... (T -0.117 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 91%........ 246s Acceptable hash function found after 1000 cycles. 246s Best uses 2/2 bases and has 0 empties from 2 inputs. 246s Score: 0.96875 (cf. worst: -4.51562) 246s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 246s Total correlation penalty: 0 246s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 246s 10 246s == 246s w[ 0]>>29: -.C 246s w[ 0]>>30: A.- 246s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 246s Ecolist (optimistic): Expcted entries per list: 16 246s Ecolist (optimistic): Minimum chunks per list: 3 246s Would take minimum 256.000000 bytes to make perfect hash. 246s Hashing 662.62 KB of sequence requires: 246s ~ linear (in seq length) hashing cost of 1.70 MB 246s ~ linear (in seq length) expected anchor cost of 15.72 MB 246s Initial hash table uses: 256 bytes (4 bits, 16 entries) 246s Expected memory usage (without anchors): 1.70 MB 246s Expected memory usage (with anchors): 17.42 MB 246s Hash parameters computed in 0.148 seconds 246s Creating storage structures: 16 entries in 256 bytes space. 246s Storage structures created in: 0.000 seconds 246s 246s Hashing NZ_GG705063.fna forwards 246s 0%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 10%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 20%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 30%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 40%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 50%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 60%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 90%......... 246s Hashing NZ_GG705063.fna backwards 246s 0%......... (T -0.019 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 10%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 20%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 30%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 40%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 50%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 60%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 90%......... 246s Hashing NZ_GG705063.gbk forwards 246s 0%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 10%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 20%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 30%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 40%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 50%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 60%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 70%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 90%......... 246s Hashing NZ_GG705063.gbk backwards 246s 0%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 10%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 20%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 30%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 40%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 50%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 60%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:34 2024 246s 90%......... 246s Initial hashing took: 0.068 seconds 246s Extracting anchors from hash-space. 246s (T -0.629 seconds) ETA: Sat Mar 16 02:35:35 2024 246s 6%. (T -0.695 seconds) ETA: Sat Mar 16 02:35:35 2024 246s 18%. (T -0.487 seconds) ETA: Sat Mar 16 02:35:35 2024 246s 31%. (T -0.401 seconds) ETA: Sat Mar 16 02:35:35 2024 246s 43%. (T -0.301 seconds) ETA: Sat Mar 16 02:35:35 2024 246s 56%. (T -0.220 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 68%. (T -0.125 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 81%. (T -0.048 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 93%. 247s Anchor extraction completed in: 0.686 seconds 247s Total anchors: 0 247s Anchor extraction + merge time: 0.686 seconds 247s Total processing time: 0.924 seconds 247s Writing anchors... 247s Total seeds used in anchors: 16 247s Hash performance: 247s Keys used: 16 out of 16 possible (100.00%). 247s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 247s Average pigeons per pigeon hole: 1 247s Writing 16 repeats...Output writing finished in: 0.106 seconds 247s Total time: 1.031 seconds 247s Murasaki finished! 247s PASSED MURASAKI 247s 247s Testing Genepare on NZ_GG705063.fna 247s 1001 247s PASSED GENEPARSE 247s 247s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 247s Testing mbfa on NZ_GG705063.fna 247s PASSED mbfa 247s 247s Test Murasaki on NZ_GG705064.fna 247s Verbosity level is: 0 247s Writing to: output/test 247s Pattern is: 101 247s Max usable hash bits: 27 247s Hit filter is: 0 247s Hash table type is: EcoHash 247s Hashing every: 1 base 247s Histogram detail is: 0 247s Hashing function is: 3 247s Collision profiling is: disabled 247s Repeats are: unmasked 247s Mergefilter is at: 100 247s Random seed: 1710556535 (automatic) 247s Bitscore output: on 247s Leave status records: no 247s Join neighbors is: off 247s Target memory is: 1.24 GB 247s Retain members is: true 247s Store repeatmap? yes 247s Reverse complement data is generated on the fly 247s Rifts allowed: 0 247s Fuzzy Extension: yes 247s Score by minimum pair: yes 247s Gapped anchors: no 247s Large sequence support is: enabled => seqpos is 8 bytes 247s Murasaki version 1.68.6 (LARGESEQ) 247s Loading NZ_GG705064.fna 247s Read 165027bp (161.16 KBp) in 0.009 seconds (18.1 MBp/s) 247s Done with forward strand (167894bp). Preparing reverse complement... 247s <-> Reversing metdata. 247s Done. 247s Seq NZ_GG705064.fna loaded. 163.96 KB 247s Loading NZ_GG705064.gbk 247s Read 165027bp (161.16 KBp) in 0.012 seconds (13.2 MBp/s) 247s Done with forward strand (167894bp). Preparing reverse complement... 247s <-> Reversing metdata. 247s Done. 247s Seq NZ_GG705064.gbk loaded. 163.96 KB 247s Sequence loading took: 0.021 seconds 247s Forward frequencies: A:27.6058% C:21.1172% G:23.1338% T:28.1433% 247s Global base frequencies: A/T:55.7491% C/G:44.2509% 247s Pat: 3 bases long with weight 2 247s 1 101 247s Computing hash parameters... 247s Using 4 hashbits 247s 0%......... (T -0.134 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 70%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 91%........ 247s Acceptable hash function found after 1000 cycles. 247s Best uses 2/2 bases and has 0 empties from 2 inputs. 247s Score: 0.96875 (cf. worst: -4.51562) 247s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 247s Total correlation penalty: 0 247s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 247s 10 247s == 247s w[ 0]>>29: -.C 247s w[ 0]>>30: A.- 247s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1) 247s Ecolist (optimistic): Expcted entries per list: 16 247s Ecolist (optimistic): Minimum chunks per list: 3 247s Would take minimum 256.000000 bytes to make perfect hash. 247s Hashing 644.64 KB of sequence requires: 247s ~ linear (in seq length) hashing cost of 1.65 MB 247s ~ linear (in seq length) expected anchor cost of 15.37 MB 247s Initial hash table uses: 256 bytes (4 bits, 16 entries) 247s Expected memory usage (without anchors): 1.65 MB 247s Expected memory usage (with anchors): 17.02 MB 247s Hash parameters computed in 0.147 seconds 247s Creating storage structures: 16 entries in 256 bytes space. 247s Storage structures created in: 0.000 seconds 247s 247s Hashing NZ_GG705064.fna forwards 247s 0%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 10%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 20%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 30%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 40%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 50%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 60%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 90%......... 247s Hashing NZ_GG705064.fna backwards 247s 0%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 10%......... (T -0.016 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 20%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 30%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 40%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 50%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 60%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 90%......... 247s Hashing NZ_GG705064.gbk forwards 247s 0%......... (T -0.020 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 10%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 20%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 30%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 40%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 50%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 60%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 70%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 90%......... 247s Hashing NZ_GG705064.gbk backwards 247s 0%......... (T -0.018 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 10%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 20%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 30%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 40%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 50%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 60%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 80%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:35 2024 247s 90%......... 247s Initial hashing took: 0.074 seconds 247s Extracting anchors from hash-space. 247s (T -0.728 seconds) ETA: Sat Mar 16 02:35:36 2024 247s 6%. (T -0.590 seconds) ETA: Sat Mar 16 02:35:36 2024 247s 18%. (T -0.429 seconds) ETA: Sat Mar 16 02:35:36 2024 247s 31%. (T -0.393 seconds) ETA: Sat Mar 16 02:35:36 2024 247s 43%. (T -0.297 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 56%. (T -0.227 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 68%. (T -0.128 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 81%. (T -0.047 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 93%. 248s Anchor extraction completed in: 0.665 seconds 248s Total anchors: 0 248s Anchor extraction + merge time: 0.665 seconds 248s Total processing time: 0.908 seconds 248s Writing anchors... 248s Total seeds used in anchors: 16 248s Hash performance: 248s Keys used: 16 out of 16 possible (100.00%). 248s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 248s Average pigeons per pigeon hole: 1 248s Writing 16 repeats...Output writing finished in: 0.103 seconds 248s Total time: 1.011 seconds 248s Murasaki finished! 248s PASSED MURASAKI 248s 248s Testing Genepare on NZ_GG705064.fna 248s 1001 248s PASSED GENEPARSE 248s 248s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 248s Testing mbfa on NZ_GG705064.fna 248s PASSED mbfa 248s 248s Test Murasaki on NZ_GG705065.fna 248s Verbosity level is: 0 248s Writing to: output/test 248s Pattern is: 101 248s Max usable hash bits: 27 248s Hit filter is: 0 248s Hash table type is: EcoHash 248s Hashing every: 1 base 248s Histogram detail is: 0 248s Hashing function is: 3 248s Collision profiling is: disabled 248s Repeats are: unmasked 248s Mergefilter is at: 100 248s Random seed: 1710556536 (automatic) 248s Bitscore output: on 248s Leave status records: no 248s Join neighbors is: off 248s Target memory is: 1.24 GB 248s Retain members is: true 248s Store repeatmap? yes 248s Reverse complement data is generated on the fly 248s Rifts allowed: 0 248s Fuzzy Extension: yes 248s Score by minimum pair: yes 248s Gapped anchors: no 248s Large sequence support is: enabled => seqpos is 8 bytes 248s Murasaki version 1.68.6 (LARGESEQ) 248s Loading NZ_GG705065.fna 248s Read 123593bp (120.70 KBp) in 0.007 seconds (17.5 MBp/s) 248s Done with forward strand (130343bp). Preparing reverse complement... 248s <-> Reversing metdata. 248s Done. 248s Seq NZ_GG705065.fna loaded. 127.29 KB 248s Loading NZ_GG705065.gbk 248s Read 123593bp (120.70 KBp) in 0.010 seconds (12.3 MBp/s) 248s Done with forward strand (130343bp). Preparing reverse complement... 248s <-> Reversing metdata. 248s Done. 248s Seq NZ_GG705065.gbk loaded. 127.29 KB 248s Sequence loading took: 0.017 seconds 248s Forward frequencies: A:28.2694% C:23.0272% G:21.2504% T:27.453% 248s Global base frequencies: A/T:55.7224% C/G:44.2776% 248s Pat: 3 bases long with weight 2 248s 1 101 248s Computing hash parameters... 248s Using 4 hashbits 248s 0%......... (T -0.131 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 10%......... (T -0.117 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 20%......... (T -0.102 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 91%........ 248s Acceptable hash function found after 1000 cycles. 248s Best uses 2/2 bases and has 0 empties from 2 inputs. 248s Score: 0.96875 (cf. worst: -4.51562) 248s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 248s Total correlation penalty: 0 248s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 248s 10 248s == 248s w[ 0]>>29: -.C 248s w[ 0]>>30: A.- 248s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 248s Ecolist (optimistic): Expcted entries per list: 15 248s Ecolist (optimistic): Minimum chunks per list: 3 248s Would take minimum 256.000000 bytes to make perfect hash. 248s Hashing 482.79 KB of sequence requires: 248s ~ linear (in seq length) hashing cost of 1.18 MB 248s ~ linear (in seq length) expected anchor cost of 11.93 MB 248s Initial hash table uses: 256 bytes (4 bits, 16 entries) 248s Expected memory usage (without anchors): 1.18 MB 248s Expected memory usage (with anchors): 13.11 MB 248s Hash parameters computed in 0.149 seconds 248s Creating storage structures: 16 entries in 256 bytes space. 248s Storage structures created in: 0.000 seconds 248s 248s Hashing NZ_GG705065.fna forwards 248s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 10%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 20%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 30%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 40%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 50%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 60%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 90%......... 248s Hashing NZ_GG705065.fna backwards 248s 0%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 10%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 20%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 30%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 40%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 50%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 60%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 90%......... 248s Hashing NZ_GG705065.gbk forwards 248s 0%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 10%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 20%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 30%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 40%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 50%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 60%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 90%......... 248s Hashing NZ_GG705065.gbk backwards 248s 0%......... (T -0.017 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 10%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 20%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 30%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 40%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 50%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 60%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:36 2024 248s 90%......... 248s Initial hashing took: 0.055 seconds 248s Extracting anchors from hash-space. 248s (T -0.621 seconds) ETA: Sat Mar 16 02:35:37 2024 248s 6%. (T -0.454 seconds) ETA: Sat Mar 16 02:35:37 2024 248s 18%. (T -0.365 seconds) ETA: Sat Mar 16 02:35:37 2024 248s 31%. (T -0.281 seconds) ETA: Sat Mar 16 02:35:37 2024 248s 43%. (T -0.211 seconds) ETA: Sat Mar 16 02:35:37 2024 248s 56%. (T -0.147 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 68%. (T -0.090 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 81%. (T -0.033 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 93%. 249s Anchor extraction completed in: 0.482 seconds 249s Total anchors: 0 249s Anchor extraction + merge time: 0.482 seconds 249s Total processing time: 0.702 seconds 249s Writing anchors... 249s Total seeds used in anchors: 16 249s Hash performance: 249s Keys used: 16 out of 16 possible (100.00%). 249s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 249s Average pigeons per pigeon hole: 1 249s Writing 16 repeats...Output writing finished in: 0.078 seconds 249s Total time: 0.781 seconds 249s Murasaki finished! 249s PASSED MURASAKI 249s 249s Testing Genepare on NZ_GG705065.fna 249s 1001 249s PASSED GENEPARSE 249s 249s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 249s Testing mbfa on NZ_GG705065.fna 249s PASSED mbfa 249s 249s Test Murasaki on NZ_GG705066.fna 249s Verbosity level is: 0 249s Writing to: output/test 249s Pattern is: 101 249s Max usable hash bits: 27 249s Hit filter is: 0 249s Hash table type is: EcoHash 249s Hashing every: 1 base 249s Histogram detail is: 0 249s Hashing function is: 3 249s Collision profiling is: disabled 249s Repeats are: unmasked 249s Mergefilter is at: 100 249s Random seed: 1710556537 (automatic) 249s Bitscore output: on 249s Leave status records: no 249s Join neighbors is: off 249s Target memory is: 1.24 GB 249s Retain members is: true 249s Store repeatmap? yes 249s Reverse complement data is generated on the fly 249s Rifts allowed: 0 249s Fuzzy Extension: yes 249s Score by minimum pair: yes 249s Gapped anchors: no 249s Large sequence support is: enabled => seqpos is 8 bytes 249s Murasaki version 1.68.6 (LARGESEQ) 249s Loading NZ_GG705066.fna 249s Read 102039bp (99.65 KBp) in 0.006 seconds (17.7 MBp/s) 249s Done with forward strand (106208bp). Preparing reverse complement... 249s <-> Reversing metdata. 249s Done. 249s Seq NZ_GG705066.fna loaded. 103.72 KB 249s Loading NZ_GG705066.gbk 249s Read 102039bp (99.65 KBp) in 0.007 seconds (13.0 MBp/s) 249s Done with forward strand (106208bp). Preparing reverse complement... 249s <-> Reversing metdata. 249s Done. 249s Seq NZ_GG705066.gbk loaded. 103.72 KB 249s Sequence loading took: 0.013 seconds 249s Forward frequencies: A:29.277% C:20.206% G:22.6257% T:27.8913% 249s Global base frequencies: A/T:57.1683% C/G:42.8317% 249s Pat: 3 bases long with weight 2 249s 1 101 249s Computing hash parameters... 249s Using 4 hashbits 249s 0%......... (T -0.134 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 10%......... (T -0.117 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 70%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 91%........ 249s Acceptable hash function found after 1000 cycles. 249s Best uses 2/2 bases and has 0 empties from 2 inputs. 249s Score: 0.96875 (cf. worst: -4.51562) 249s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 249s Total correlation penalty: 0 249s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 249s 10 249s == 249s w[ 0]>>29: -.C 249s w[ 0]>>30: A.- 249s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 249s Ecolist (optimistic): Expcted entries per list: 15 249s Ecolist (optimistic): Minimum chunks per list: 3 249s Would take minimum 256.000000 bytes to make perfect hash. 249s Hashing 398.59 KB of sequence requires: 249s ~ linear (in seq length) hashing cost of 996.46 KB 249s ~ linear (in seq length) expected anchor cost of 9.72 MB 249s Initial hash table uses: 256 bytes (4 bits, 16 entries) 249s Expected memory usage (without anchors): 996.71 KB 249s Expected memory usage (with anchors): 10.70 MB 249s Hash parameters computed in 0.148 seconds 249s Creating storage structures: 16 entries in 256 bytes space. 249s Storage structures created in: 0.000 seconds 249s 249s Hashing NZ_GG705066.fna forwards 249s 0%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 10%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 30%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 40%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 50%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 60%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 90%......... 249s Hashing NZ_GG705066.fna backwards 249s 0%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 10%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 20%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 30%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 40%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 50%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 60%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 90%......... 249s Hashing NZ_GG705066.gbk forwards 249s 0%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 10%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 20%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 30%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 40%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 50%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 60%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 90%......... 249s Hashing NZ_GG705066.gbk backwards 249s 0%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 10%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 20%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 30%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 40%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 50%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 60%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 90%......... 249s Initial hashing took: 0.049 seconds 249s Extracting anchors from hash-space. 249s (T -0.278 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 6%. (T -0.313 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 18%. (T -0.216 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 31%. (T -0.173 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 43%. (T -0.118 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 56%. (T -0.086 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 68%. (T -0.051 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 81%. (T -0.020 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 93%. 249s Anchor extraction completed in: 0.276 seconds 249s Total anchors: 0 249s Anchor extraction + merge time: 0.276 seconds 249s Total processing time: 0.486 seconds 249s Writing anchors... 249s Total seeds used in anchors: 16 249s Hash performance: 249s Keys used: 16 out of 16 possible (100.00%). 249s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 249s Average pigeons per pigeon hole: 1 249s Writing 16 repeats...Output writing finished in: 0.065 seconds 249s Total time: 0.552 seconds 249s Murasaki finished! 249s PASSED MURASAKI 249s 249s Testing Genepare on NZ_GG705066.fna 249s 1001 249s PASSED GENEPARSE 249s 249s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 249s Testing mbfa on NZ_GG705066.fna 249s PASSED mbfa 249s 249s Test Murasaki on NZ_GG705067.fna 249s Verbosity level is: 0 249s Writing to: output/test 249s Pattern is: 101 249s Max usable hash bits: 27 249s Hit filter is: 0 249s Hash table type is: EcoHash 249s Hashing every: 1 base 249s Histogram detail is: 0 249s Hashing function is: 3 249s Collision profiling is: disabled 249s Repeats are: unmasked 249s Mergefilter is at: 100 249s Random seed: 1710556537 (automatic) 249s Bitscore output: on 249s Leave status records: no 249s Join neighbors is: off 249s Target memory is: 1.24 GB 249s Retain members is: true 249s Store repeatmap? yes 249s Reverse complement data is generated on the fly 249s Rifts allowed: 0 249s Fuzzy Extension: yes 249s Score by minimum pair: yes 249s Gapped anchors: no 249s Large sequence support is: enabled => seqpos is 8 bytes 249s Murasaki version 1.68.6 (LARGESEQ) 249s Loading NZ_GG705067.fna 249s Read 92138bp (89.98 KBp) in 0.005 seconds (16.7 MBp/s) 249s Done with forward strand (99840bp). Preparing reverse complement... 249s <-> Reversing metdata. 249s Done. 249s Seq NZ_GG705067.fna loaded. 97.50 KB 249s Loading NZ_GG705067.gbk 249s Read 92138bp (89.98 KBp) in 0.007 seconds (12.3 MBp/s) 249s Done with forward strand (99840bp). Preparing reverse complement... 249s <-> Reversing metdata. 249s Done. 249s Seq NZ_GG705067.gbk loaded. 97.50 KB 249s Sequence loading took: 0.013 seconds 249s Forward frequencies: A:28.7753% C:20.1448% G:22.0311% T:29.0488% 249s Global base frequencies: A/T:57.8241% C/G:42.1759% 249s Pat: 3 bases long with weight 2 249s 1 101 249s Computing hash parameters... 249s Using 4 hashbits 249s 0%......... (T -0.135 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:37 2024 249s 70%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 91%........ 250s Acceptable hash function found after 1000 cycles. 250s Best uses 2/2 bases and has 0 empties from 2 inputs. 250s Score: 0.96875 (cf. worst: -4.51562) 250s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 250s Total correlation penalty: 0 250s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 250s 10 250s == 250s w[ 0]>>29: -.C 250s w[ 0]>>30: A.- 250s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 250s Ecolist (optimistic): Expcted entries per list: 15 250s Ecolist (optimistic): Minimum chunks per list: 3 250s Would take minimum 256.000000 bytes to make perfect hash. 250s Hashing 359.91 KB of sequence requires: 250s ~ linear (in seq length) hashing cost of 899.79 KB 250s ~ linear (in seq length) expected anchor cost of 9.14 MB 250s Initial hash table uses: 256 bytes (4 bits, 16 entries) 250s Expected memory usage (without anchors): 900.04 KB 250s Expected memory usage (with anchors): 10.02 MB 250s Hash parameters computed in 0.148 seconds 250s Creating storage structures: 16 entries in 256 bytes space. 250s Storage structures created in: 0.000 seconds 250s 250s Hashing NZ_GG705067.fna forwards 250s 0%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 10%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 20%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 30%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 40%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 50%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 60%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:37 2024 250s 90%......... 250s Hashing NZ_GG705067.fna backwards 250s 0%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 10%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 40%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 50%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 60%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 90%......... 250s Hashing NZ_GG705067.gbk forwards 250s 0%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 10%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 20%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 30%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 40%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 50%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 60%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 90%......... 250s Hashing NZ_GG705067.gbk backwards 250s 0%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 10%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 20%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 30%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 40%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 50%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 60%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 90%......... 250s Initial hashing took: 0.042 seconds 250s Extracting anchors from hash-space. 250s (T -0.239 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 6%. (T -0.270 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 18%. (T -0.190 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 31%. (T -0.153 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 43%. (T -0.104 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 56%. (T -0.076 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 68%. (T -0.045 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 81%. (T -0.017 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 93%. 250s Anchor extraction completed in: 0.245 seconds 250s Total anchors: 0 250s Anchor extraction + merge time: 0.245 seconds 250s Total processing time: 0.450 seconds 250s Writing anchors... 250s Total seeds used in anchors: 16 250s Hash performance: 250s Keys used: 16 out of 16 possible (100.00%). 250s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 250s Average pigeons per pigeon hole: 1 250s Writing 16 repeats...Output writing finished in: 0.058 seconds 250s Total time: 0.508 seconds 250s Murasaki finished! 250s PASSED MURASAKI 250s 250s Testing Genepare on NZ_GG705067.fna 250s 1001 250s PASSED GENEPARSE 250s 250s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 250s Testing mbfa on NZ_GG705067.fna 250s PASSED mbfa 250s 250s Test Murasaki on NZ_GG705068.fna 250s Verbosity level is: 0 250s Writing to: output/test 250s Pattern is: 101 250s Max usable hash bits: 27 250s Hit filter is: 0 250s Hash table type is: EcoHash 250s Hashing every: 1 base 250s Histogram detail is: 0 250s Hashing function is: 3 250s Collision profiling is: disabled 250s Repeats are: unmasked 250s Mergefilter is at: 100 250s Random seed: 1710556538 (automatic) 250s Bitscore output: on 250s Leave status records: no 250s Join neighbors is: off 250s Target memory is: 1.24 GB 250s Retain members is: true 250s Store repeatmap? yes 250s Reverse complement data is generated on the fly 250s Rifts allowed: 0 250s Fuzzy Extension: yes 250s Score by minimum pair: yes 250s Gapped anchors: no 250s Large sequence support is: enabled => seqpos is 8 bytes 250s Murasaki version 1.68.6 (LARGESEQ) 250s Loading NZ_GG705068.fna 250s Read 74802bp (73.05 KBp) in 0.004 seconds (16.1 MBp/s) 250s Done with forward strand (85653bp). Preparing reverse complement... 250s <-> Reversing metdata. 250s Done. 250s Seq NZ_GG705068.fna loaded. 83.65 KB 250s Loading NZ_GG705068.gbk 250s Read 74802bp (73.05 KBp) in 0.006 seconds (11.9 MBp/s) 250s Done with forward strand (85653bp). Preparing reverse complement... 250s <-> Reversing metdata. 250s Done. 250s Seq NZ_GG705068.gbk loaded. 83.65 KB 250s Sequence loading took: 0.011 seconds 250s Forward frequencies: A:30.0326% C:20.0289% G:19.2147% T:30.7238% 250s Global base frequencies: A/T:60.7564% C/G:39.2436% 250s Pat: 3 bases long with weight 2 250s 1 101 250s Computing hash parameters... 250s Using 4 hashbits 250s 0%......... (T -0.134 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 20%......... (T -0.102 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 91%........ 250s Acceptable hash function found after 1000 cycles. 250s Best uses 2/2 bases and has 0 empties from 2 inputs. 250s Score: 0.96875 (cf. worst: -4.51562) 250s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 250s Total correlation penalty: 0 250s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 250s 10 250s == 250s w[ 0]>>29: -.C 250s w[ 0]>>30: A.- 250s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1) 250s Ecolist (optimistic): Expcted entries per list: 15 250s Ecolist (optimistic): Minimum chunks per list: 3 250s Would take minimum 256.000000 bytes to make perfect hash. 250s Hashing 292.20 KB of sequence requires: 250s ~ linear (in seq length) hashing cost of 730.49 KB 250s ~ linear (in seq length) expected anchor cost of 7.84 MB 250s Initial hash table uses: 256 bytes (4 bits, 16 entries) 250s Expected memory usage (without anchors): 730.74 KB 250s Expected memory usage (with anchors): 8.56 MB 250s Hash parameters computed in 0.150 seconds 250s Creating storage structures: 16 entries in 256 bytes space. 250s Storage structures created in: 0.000 seconds 250s 250s Hashing NZ_GG705068.fna forwards 250s 0%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 10%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 40%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 50%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 90%......... 250s Hashing NZ_GG705068.fna backwards 250s 0%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 10%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 20%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 30%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 40%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 50%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 90%......... 250s Hashing NZ_GG705068.gbk forwards 250s 0%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 10%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 20%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 30%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 40%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 50%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 60%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 70%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 90%......... 250s Hashing NZ_GG705068.gbk backwards 250s 0%......... (T -0.012 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 10%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 20%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 30%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 40%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 50%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 60%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 90%......... 250s Initial hashing took: 0.038 seconds 250s Extracting anchors from hash-space. 250s (T -0.415 seconds) ETA: Sat Mar 16 02:35:39 2024 250s 6%. (T -0.297 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 18%. (T -0.239 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 31%. (T -0.170 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 43%. (T -0.127 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 56%. (T -0.085 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 68%. (T -0.053 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 81%. (T -0.019 seconds) ETA: Sat Mar 16 02:35:38 2024 250s 93%. 250s Anchor extraction completed in: 0.286 seconds 250s Total anchors: 0 250s Anchor extraction + merge time: 0.286 seconds 250s Total processing time: 0.486 seconds 250s Writing anchors... 250s Total seeds used in anchors: 16 250s Hash performance: 250s Keys used: 16 out of 16 possible (100.00%). 250s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 250s Average pigeons per pigeon hole: 1 250s Writing 16 repeats...Output writing finished in: 0.048 seconds 250s Total time: 0.533 seconds 250s Murasaki finished! 250s PASSED MURASAKI 250s 250s Testing Genepare on NZ_GG705068.fna 250s 1001 250s PASSED GENEPARSE 250s 250s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 250s Testing mbfa on NZ_GG705068.fna 250s PASSED mbfa 250s 250s Test Murasaki on NZ_GG705069.fna 250s Verbosity level is: 0 250s Writing to: output/test 250s Pattern is: 101 250s Max usable hash bits: 27 250s Hit filter is: 0 250s Hash table type is: EcoHash 251s Hashing every: 1 base 251s Histogram detail is: 0 251s Hashing function is: 3 251s Collision profiling is: disabled 251s Repeats are: unmasked 251s Mergefilter is at: 100 251s Random seed: 1710556538 (automatic) 251s Bitscore output: on 251s Leave status records: no 251s Join neighbors is: off 251s Target memory is: 1.24 GB 251s Retain members is: true 251s Store repeatmap? yes 251s Reverse complement data is generated on the fly 251s Rifts allowed: 0 251s Fuzzy Extension: yes 251s Score by minimum pair: yes 251s Gapped anchors: no 251s Large sequence support is: enabled => seqpos is 8 bytes 251s Murasaki version 1.68.6 (LARGESEQ) 251s Loading NZ_GG705069.fna 251s Read 49931bp (48.76 KBp) in 0.003 seconds (15.1 MBp/s) 251s Done with forward strand (54571bp). Preparing reverse complement... 251s <-> Reversing metdata. 251s Done. 251s Seq NZ_GG705069.fna loaded. 53.29 KB 251s Loading NZ_GG705069.gbk 251s Read 49931bp (48.76 KBp) in 0.004 seconds (12.0 MBp/s) 251s Done with forward strand (54571bp). Preparing reverse complement... 251s <-> Reversing metdata. 251s Done. 251s Seq NZ_GG705069.gbk loaded. 53.29 KB 251s Sequence loading took: 0.008 seconds 251s Forward frequencies: A:27.7563% C:21.4616% G:21.8221% T:28.96% 251s Global base frequencies: A/T:56.7163% C/G:43.2837% 251s Pat: 3 bases long with weight 2 251s 1 101 251s Computing hash parameters... 251s Using 4 hashbits 251s 0%......... (T -0.134 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 20%......... (T -0.102 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 91%........ 251s Acceptable hash function found after 1000 cycles. 251s Best uses 2/2 bases and has 0 empties from 2 inputs. 251s Score: 0.96875 (cf. worst: -4.51562) 251s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 251s Total correlation penalty: 0 251s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 251s 10 251s == 251s w[ 0]>>29: -.C 251s w[ 0]>>30: A.- 251s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 251s Ecolist (optimistic): Expcted entries per list: 14 251s Ecolist (optimistic): Minimum chunks per list: 3 251s Would take minimum 256.000000 bytes to make perfect hash. 251s Hashing 195.04 KB of sequence requires: 251s ~ linear (in seq length) hashing cost of 463.22 KB 251s ~ linear (in seq length) expected anchor cost of 5.00 MB 251s Initial hash table uses: 256 bytes (4 bits, 16 entries) 251s Expected memory usage (without anchors): 463.47 KB 251s Expected memory usage (with anchors): 5.45 MB 251s Hash parameters computed in 0.149 seconds 251s Creating storage structures: 16 entries in 256 bytes space. 251s Storage structures created in: 0.000 seconds 251s 251s Hashing NZ_GG705069.fna forwards 251s 0%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 10%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 90%......... 251s Hashing NZ_GG705069.fna backwards 251s 0%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 10%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 20%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 30%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 40%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 50%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 90%......... 251s Hashing NZ_GG705069.gbk forwards 251s 0%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 10%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 20%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 30%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 40%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 50%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 60%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 90%......... 251s Hashing NZ_GG705069.gbk backwards 251s 0%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 10%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 20%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 30%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 40%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 50%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 90%......... 251s Initial hashing took: 0.026 seconds 251s Extracting anchors from hash-space. 251s (T -0.225 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 6%. (T -0.170 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 18%. (T -0.146 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 31%. (T -0.110 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 43%. (T -0.083 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 56%. (T -0.057 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 68%. (T -0.034 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 81%. (T -0.013 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 93%. 251s Anchor extraction completed in: 0.183 seconds 251s Total anchors: 0 251s Anchor extraction + merge time: 0.183 seconds 251s Total processing time: 0.367 seconds 251s Writing anchors... 251s Total seeds used in anchors: 16 251s Hash performance: 251s Keys used: 16 out of 16 possible (100.00%). 251s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 251s Average pigeons per pigeon hole: 1 251s Writing 16 repeats...Output writing finished in: 0.032 seconds 251s Total time: 0.399 seconds 251s Murasaki finished! 251s PASSED MURASAKI 251s 251s Testing Genepare on NZ_GG705069.fna 251s 1001 251s PASSED GENEPARSE 251s 251s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 251s Testing mbfa on NZ_GG705069.fna 251s PASSED mbfa 251s 251s Test Murasaki on NZ_GG705070.fna 251s Verbosity level is: 0 251s Writing to: output/test 251s Pattern is: 101 251s Max usable hash bits: 27 251s Hit filter is: 0 251s Hash table type is: EcoHash 251s Hashing every: 1 base 251s Histogram detail is: 0 251s Hashing function is: 3 251s Collision profiling is: disabled 251s Repeats are: unmasked 251s Mergefilter is at: 100 251s Random seed: 1710556539 (automatic) 251s Bitscore output: on 251s Leave status records: no 251s Join neighbors is: off 251s Target memory is: 1.24 GB 251s Retain members is: true 251s Store repeatmap? yes 251s Reverse complement data is generated on the fly 251s Rifts allowed: 0 251s Fuzzy Extension: yes 251s Score by minimum pair: yes 251s Gapped anchors: no 251s Large sequence support is: enabled => seqpos is 8 bytes 251s Murasaki version 1.68.6 (LARGESEQ) 251s Loading NZ_GG705070.fna 251s Read 51237bp (50.04 KBp) in 0.003 seconds (16.0 MBp/s) 251s Done with forward strand (53557bp). Preparing reverse complement... 251s <-> Reversing metdata. 251s Done. 251s Seq NZ_GG705070.fna loaded. 52.30 KB 251s Loading NZ_GG705070.gbk 251s Read 51237bp (50.04 KBp) in 0.004 seconds (12.8 MBp/s) 251s Done with forward strand (53557bp). Preparing reverse complement... 251s <-> Reversing metdata. 251s Done. 251s Seq NZ_GG705070.gbk loaded. 52.30 KB 251s Sequence loading took: 0.007 seconds 251s Forward frequencies: A:30.0915% C:19.7416% G:21.1527% T:29.0142% 251s Global base frequencies: A/T:59.1057% C/G:40.8943% 251s Pat: 3 bases long with weight 2 251s 1 101 251s Computing hash parameters... 251s Using 4 hashbits 251s 0%......... (T -0.135 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 20%......... (T -0.106 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 91%........ 251s Acceptable hash function found after 1000 cycles. 251s Best uses 2/2 bases and has 0 empties from 2 inputs. 251s Score: 0.96875 (cf. worst: -4.51562) 251s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 251s Total correlation penalty: 0 251s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 251s 10 251s == 251s w[ 0]>>29: -.C 251s w[ 0]>>30: A.- 251s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 251s Ecolist (optimistic): Expcted entries per list: 14 251s Ecolist (optimistic): Minimum chunks per list: 3 251s Would take minimum 256.000000 bytes to make perfect hash. 251s Hashing 200.14 KB of sequence requires: 251s ~ linear (in seq length) hashing cost of 475.33 KB 251s ~ linear (in seq length) expected anchor cost of 4.90 MB 251s Initial hash table uses: 256 bytes (4 bits, 16 entries) 251s Expected memory usage (without anchors): 475.58 KB 251s Expected memory usage (with anchors): 5.37 MB 251s Hash parameters computed in 0.150 seconds 251s Creating storage structures: 16 entries in 256 bytes space. 251s Storage structures created in: 0.000 seconds 251s 251s Hashing NZ_GG705070.fna forwards 251s 0%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 90%......... 251s Hashing NZ_GG705070.fna backwards 251s 0%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 10%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 20%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 30%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 40%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 50%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 90%......... 251s Hashing NZ_GG705070.gbk forwards 251s 0%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 10%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 20%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 30%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 40%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 50%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 90%......... 251s Hashing NZ_GG705070.gbk backwards 251s 0%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 10%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 20%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 30%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 40%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 50%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 90%......... 251s Initial hashing took: 0.026 seconds 251s Extracting anchors from hash-space. 251s (T -0.129 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 6%. (T -0.139 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 18%. (T -0.109 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 31%. (T -0.115 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 43%. (T -0.086 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 56%. (T -0.067 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 68%. (T -0.037 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 81%. (T -0.014 seconds) ETA: Sat Mar 16 02:35:39 2024 251s 93%. 251s Anchor extraction completed in: 0.192 seconds 251s Total anchors: 0 251s Anchor extraction + merge time: 0.192 seconds 251s Total processing time: 0.376 seconds 251s Writing anchors... 251s Total seeds used in anchors: 16 251s Hash performance: 251s Keys used: 16 out of 16 possible (100.00%). 251s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 251s Average pigeons per pigeon hole: 1 251s Writing 16 repeats...Output writing finished in: 0.034 seconds 251s Total time: 0.409 seconds 251s Murasaki finished! 251s PASSED MURASAKI 251s 251s Testing Genepare on NZ_GG705070.fna 251s 1001 251s PASSED GENEPARSE 251s 251s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 251s Testing mbfa on NZ_GG705070.fna 251s PASSED mbfa 251s 251s Test Murasaki on NZ_GG705071.fna 251s Verbosity level is: 0 251s Writing to: output/test 251s Pattern is: 101 251s Max usable hash bits: 27 251s Hit filter is: 0 251s Hash table type is: EcoHash 251s Hashing every: 1 base 251s Histogram detail is: 0 251s Hashing function is: 3 251s Collision profiling is: disabled 251s Repeats are: unmasked 251s Mergefilter is at: 100 251s Random seed: 1710556539 (automatic) 251s Bitscore output: on 251s Leave status records: no 251s Join neighbors is: off 251s Target memory is: 1.24 GB 251s Retain members is: true 251s Store repeatmap? yes 251s Reverse complement data is generated on the fly 251s Rifts allowed: 0 251s Fuzzy Extension: yes 251s Score by minimum pair: yes 251s Gapped anchors: no 251s Large sequence support is: enabled => seqpos is 8 bytes 251s Murasaki version 1.68.6 (LARGESEQ) 251s Loading NZ_GG705071.fna 251s Read 48160bp (47.03 KBp) in 0.003 seconds (16.1 MBp/s) 251s Done with forward strand (49526bp). Preparing reverse complement... 251s <-> Reversing metdata. 251s Done. 251s Seq NZ_GG705071.fna loaded. 48.37 KB 251s Loading NZ_GG705071.gbk 251s Read 48160bp (47.03 KBp) in 0.004 seconds (12.5 MBp/s) 251s Done with forward strand (49526bp). Preparing reverse complement... 251s <-> Reversing metdata. 251s Done. 251s Seq NZ_GG705071.gbk loaded. 48.37 KB 251s Sequence loading took: 0.007 seconds 251s Forward frequencies: A:33.2766% C:16.8958% G:18.0731% T:31.7546% 251s Global base frequencies: A/T:65.0311% C/G:34.9689% 251s Pat: 3 bases long with weight 2 251s 1 101 251s Computing hash parameters... 251s Using 4 hashbits 251s 0%......... (T -0.133 seconds) ETA: Sat Mar 16 02:35:40 2024 251s 10%......... (T -0.117 seconds) ETA: Sat Mar 16 02:35:40 2024 251s 20%......... (T -0.102 seconds) ETA: Sat Mar 16 02:35:40 2024 251s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:40 2024 251s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 91%........ 252s Acceptable hash function found after 1000 cycles. 252s Best uses 2/2 bases and has 0 empties from 2 inputs. 252s Score: 0.96875 (cf. worst: -4.51562) 252s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 252s Total correlation penalty: 0 252s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 252s 10 252s == 252s w[ 0]>>29: -.C 252s w[ 0]>>30: A.- 252s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 252s Ecolist (optimistic): Expcted entries per list: 14 252s Ecolist (optimistic): Minimum chunks per list: 3 252s Would take minimum 256.000000 bytes to make perfect hash. 252s Hashing 188.12 KB of sequence requires: 252s ~ linear (in seq length) hashing cost of 446.80 KB 252s ~ linear (in seq length) expected anchor cost of 4.53 MB 252s Initial hash table uses: 256 bytes (4 bits, 16 entries) 252s Expected memory usage (without anchors): 447.05 KB 252s Expected memory usage (with anchors): 4.97 MB 252s Hash parameters computed in 0.149 seconds 252s Creating storage structures: 16 entries in 256 bytes space. 252s Storage structures created in: 0.000 seconds 252s 252s Hashing NZ_GG705071.fna forwards 252s 0%......... (T -0.011 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Hashing NZ_GG705071.fna backwards 252s 0%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Hashing NZ_GG705071.gbk forwards 252s 0%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Hashing NZ_GG705071.gbk backwards 252s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Initial hashing took: 0.025 seconds 252s Extracting anchors from hash-space. 252s (T -0.072 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 6%. (T -0.117 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 18%. (T -0.090 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 31%. (T -0.109 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 43%. (T -0.081 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 56%. (T -0.066 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 68%. (T -0.036 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 81%. (T -0.013 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 93%. 252s Anchor extraction completed in: 0.182 seconds 252s Total anchors: 0 252s Anchor extraction + merge time: 0.182 seconds 252s Total processing time: 0.364 seconds 252s Writing anchors... 252s Total seeds used in anchors: 16 252s Hash performance: 252s Keys used: 16 out of 16 possible (100.00%). 252s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 252s Average pigeons per pigeon hole: 1 252s Writing 16 repeats...Output writing finished in: 0.031 seconds 252s Total time: 0.395 seconds 252s Murasaki finished! 252s PASSED MURASAKI 252s 252s Testing Genepare on NZ_GG705071.fna 252s 1001 252s PASSED GENEPARSE 252s 252s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 252s Testing mbfa on NZ_GG705071.fna 252s PASSED mbfa 252s 252s Test Murasaki on NZ_GG705072.fna 252s Verbosity level is: 0 252s Writing to: output/test 252s Pattern is: 101 252s Max usable hash bits: 27 252s Hit filter is: 0 252s Hash table type is: EcoHash 252s Hashing every: 1 base 252s Histogram detail is: 0 252s Hashing function is: 3 252s Collision profiling is: disabled 252s Repeats are: unmasked 252s Mergefilter is at: 100 252s Random seed: 1710556540 (automatic) 252s Bitscore output: on 252s Leave status records: no 252s Join neighbors is: off 252s Target memory is: 1.24 GB 252s Retain members is: true 252s Store repeatmap? yes 252s Reverse complement data is generated on the fly 252s Rifts allowed: 0 252s Fuzzy Extension: yes 252s Score by minimum pair: yes 252s Gapped anchors: no 252s Large sequence support is: enabled => seqpos is 8 bytes 252s Murasaki version 1.68.6 (LARGESEQ) 252s Loading NZ_GG705072.fna 252s Read 25963bp (25.35 KBp) in 0.002 seconds (11.5 MBp/s) 252s Done with forward strand (35758bp). Preparing reverse complement... 252s <-> Reversing metdata. 252s Done. 252s Seq NZ_GG705072.fna loaded. 34.92 KB 252s Loading NZ_GG705072.gbk 252s Read 25963bp (25.35 KBp) in 0.002 seconds (10.0 MBp/s) 252s Done with forward strand (35758bp). Preparing reverse complement... 252s <-> Reversing metdata. 252s Done. 252s Seq NZ_GG705072.gbk loaded. 34.92 KB 252s Sequence loading took: 0.005 seconds 252s Forward frequencies: A:29.6422% C:19.6742% G:18.2259% T:32.4577% 252s Global base frequencies: A/T:62.0999% C/G:37.9001% 252s Pat: 3 bases long with weight 2 252s 1 101 252s Computing hash parameters... 252s Using 4 hashbits 252s 0%......... (T -0.133 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 91%........ 252s Acceptable hash function found after 1000 cycles. 252s Best uses 2/2 bases and has 0 empties from 2 inputs. 252s Score: 0.96875 (cf. worst: -4.51562) 252s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 252s Total correlation penalty: 0 252s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 252s 10 252s == 252s w[ 0]>>29: -.C 252s w[ 0]>>30: A.- 252s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1) 252s Ecolist (optimistic): Expcted entries per list: 13 252s Ecolist (optimistic): Minimum chunks per list: 3 252s Would take minimum 256.000000 bytes to make perfect hash. 252s Hashing 101.42 KB of sequence requires: 252s ~ linear (in seq length) hashing cost of 240.86 KB 252s ~ linear (in seq length) expected anchor cost of 3.27 MB 252s Initial hash table uses: 256 bytes (4 bits, 16 entries) 252s Expected memory usage (without anchors): 241.11 KB 252s Expected memory usage (with anchors): 3.51 MB 252s Hash parameters computed in 0.149 seconds 252s Creating storage structures: 16 entries in 256 bytes space. 252s Storage structures created in: 0.000 seconds 252s 252s Hashing NZ_GG705072.fna forwards 252s 0%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Hashing NZ_GG705072.fna backwards 252s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Hashing NZ_GG705072.gbk forwards 252s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Hashing NZ_GG705072.gbk backwards 252s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Initial hashing took: 0.013 seconds 252s Extracting anchors from hash-space. 252s (T -0.084 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 6%. (T -0.053 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 18%. (T -0.056 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 31%. (T -0.048 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 43%. (T -0.043 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 56%. (T -0.031 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 68%. (T -0.019 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 81%. (T -0.006 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 93%. 252s Anchor extraction completed in: 0.090 seconds 252s Total anchors: 0 252s Anchor extraction + merge time: 0.090 seconds 252s Total processing time: 0.258 seconds 252s Writing anchors... 252s Total seeds used in anchors: 16 252s Hash performance: 252s Keys used: 16 out of 16 possible (100.00%). 252s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 252s Average pigeons per pigeon hole: 1 252s Writing 16 repeats...Output writing finished in: 0.017 seconds 252s Total time: 0.275 seconds 252s Murasaki finished! 252s PASSED MURASAKI 252s 252s Testing Genepare on NZ_GG705072.fna 252s 1001 252s PASSED GENEPARSE 252s 252s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 252s Testing mbfa on NZ_GG705072.fna 252s PASSED mbfa 252s 252s Test Murasaki on NZ_GG705073.fna 252s Verbosity level is: 0 252s Writing to: output/test 252s Pattern is: 101 252s Max usable hash bits: 27 252s Hit filter is: 0 252s Hash table type is: EcoHash 252s Hashing every: 1 base 252s Histogram detail is: 0 252s Hashing function is: 3 252s Collision profiling is: disabled 252s Repeats are: unmasked 252s Mergefilter is at: 100 252s Random seed: 1710556540 (automatic) 252s Bitscore output: on 252s Leave status records: no 252s Join neighbors is: off 252s Target memory is: 1.24 GB 252s Retain members is: true 252s Store repeatmap? yes 252s Reverse complement data is generated on the fly 252s Rifts allowed: 0 252s Fuzzy Extension: yes 252s Score by minimum pair: yes 252s Gapped anchors: no 252s Large sequence support is: enabled => seqpos is 8 bytes 252s Murasaki version 1.68.6 (LARGESEQ) 252s Loading NZ_GG705073.fna 252s Read 29370bp (28.68 KBp) in 0.002 seconds (14.0 MBp/s) 252s Done with forward strand (32703bp). Preparing reverse complement... 252s <-> Reversing metdata. 252s Done. 252s Seq NZ_GG705073.fna loaded. 31.94 KB 252s Loading NZ_GG705073.gbk 252s Read 29370bp (28.68 KBp) in 0.002 seconds (11.5 MBp/s) 252s Done with forward strand (32703bp). Preparing reverse complement... 252s <-> Reversing metdata. 252s Done. 252s Seq NZ_GG705073.gbk loaded. 31.94 KB 252s Sequence loading took: 0.005 seconds 252s Forward frequencies: A:31.0964% C:18.2635% G:17.6166% T:33.0235% 252s Global base frequencies: A/T:64.1199% C/G:35.8801% 252s Pat: 3 bases long with weight 2 252s 1 101 252s Computing hash parameters... 252s Using 4 hashbits 252s 0%......... (T -0.133 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.117 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.102 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 91%........ 252s Acceptable hash function found after 1000 cycles. 252s Best uses 2/2 bases and has 0 empties from 2 inputs. 252s Score: 0.96875 (cf. worst: -4.51562) 252s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 252s Total correlation penalty: 0 252s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 252s 10 252s == 252s w[ 0]>>29: -.C 252s w[ 0]>>30: A.- 252s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1) 252s Ecolist (optimistic): Expcted entries per list: 13 252s Ecolist (optimistic): Minimum chunks per list: 3 252s Would take minimum 256.000000 bytes to make perfect hash. 252s Hashing 114.73 KB of sequence requires: 252s ~ linear (in seq length) hashing cost of 258.13 KB 252s ~ linear (in seq length) expected anchor cost of 2.99 MB 252s Initial hash table uses: 256 bytes (4 bits, 16 entries) 252s Expected memory usage (without anchors): 258.38 KB 252s Expected memory usage (with anchors): 3.25 MB 252s Hash parameters computed in 0.149 seconds 252s Creating storage structures: 16 entries in 256 bytes space. 252s Storage structures created in: 0.000 seconds 252s 252s Hashing NZ_GG705073.fna forwards 252s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Hashing NZ_GG705073.fna backwards 252s 0%......... (T -0.010 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Hashing NZ_GG705073.gbk forwards 252s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Hashing NZ_GG705073.gbk backwards 252s 0%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 10%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 20%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 90%......... 252s Initial hashing took: 0.017 seconds 252s Extracting anchors from hash-space. 252s (T -0.089 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 6%. (T -0.055 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 18%. (T -0.066 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 31%. (T -0.055 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 43%. (T -0.049 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 56%. (T -0.035 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 68%. (T -0.021 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 81%. (T -0.007 seconds) ETA: Sat Mar 16 02:35:40 2024 252s 93%. 252s Anchor extraction completed in: 0.102 seconds 252s Total anchors: 0 252s Anchor extraction + merge time: 0.102 seconds 252s Total processing time: 0.274 seconds 252s Writing anchors... 252s Total seeds used in anchors: 16 252s Hash performance: 252s Keys used: 16 out of 16 possible (100.00%). 252s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 252s Average pigeons per pigeon hole: 1 252s Writing 16 repeats...Output writing finished in: 0.019 seconds 252s Total time: 0.293 seconds 252s Murasaki finished! 252s PASSED MURASAKI 252s 252s Testing Genepare on NZ_GG705073.fna 252s 1001 252s PASSED GENEPARSE 252s 253s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 253s Testing mbfa on NZ_GG705073.fna 253s PASSED mbfa 253s 253s Test Murasaki on NZ_GG705074.fna 253s Verbosity level is: 0 253s Writing to: output/test 253s Pattern is: 101 253s Max usable hash bits: 27 253s Hit filter is: 0 253s Hash table type is: EcoHash 253s Hashing every: 1 base 253s Histogram detail is: 0 253s Hashing function is: 3 253s Collision profiling is: disabled 253s Repeats are: unmasked 253s Mergefilter is at: 100 253s Random seed: 1710556540 (automatic) 253s Bitscore output: on 253s Leave status records: no 253s Join neighbors is: off 253s Target memory is: 1.24 GB 253s Retain members is: true 253s Store repeatmap? yes 253s Reverse complement data is generated on the fly 253s Rifts allowed: 0 253s Fuzzy Extension: yes 253s Score by minimum pair: yes 253s Gapped anchors: no 253s Large sequence support is: enabled => seqpos is 8 bytes 253s Murasaki version 1.68.6 (LARGESEQ) 253s Loading NZ_GG705074.fna 253s Read 27463bp (26.82 KBp) in 0.002 seconds (16.4 MBp/s) 253s Done with forward strand (27739bp). Preparing reverse complement... 253s <-> Reversing metdata. 253s Done. 253s Seq NZ_GG705074.fna loaded. 27.09 KB 253s Loading NZ_GG705074.gbk 253s Read 27463bp (26.82 KBp) in 0.002 seconds (11.5 MBp/s) 253s Done with forward strand (27739bp). Preparing reverse complement... 253s <-> Reversing metdata. 253s Done. 253s Seq NZ_GG705074.gbk loaded. 27.09 KB 253s Sequence loading took: 0.004 seconds 253s Forward frequencies: A:29.7418% C:22.6122% G:19.164% T:28.482% 253s Global base frequencies: A/T:58.2238% C/G:41.7762% 253s Pat: 3 bases long with weight 2 253s 1 101 253s Computing hash parameters... 253s Using 4 hashbits 253s 0%......... (T -0.133 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.117 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.102 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 91%........ 253s Acceptable hash function found after 1000 cycles. 253s Best uses 2/2 bases and has 0 empties from 2 inputs. 253s Score: 0.96875 (cf. worst: -4.51562) 253s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 253s Total correlation penalty: 0 253s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 253s 10 253s == 253s w[ 0]>>29: -.C 253s w[ 0]>>30: A.- 253s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1) 253s Ecolist (optimistic): Expcted entries per list: 13 253s Ecolist (optimistic): Minimum chunks per list: 3 253s Would take minimum 256.000000 bytes to make perfect hash. 253s Hashing 107.28 KB of sequence requires: 253s ~ linear (in seq length) hashing cost of 241.37 KB 253s ~ linear (in seq length) expected anchor cost of 2.54 MB 253s Initial hash table uses: 256 bytes (4 bits, 16 entries) 253s Expected memory usage (without anchors): 241.62 KB 253s Expected memory usage (with anchors): 2.78 MB 253s Hash parameters computed in 0.149 seconds 253s Creating storage structures: 16 entries in 256 bytes space. 253s Storage structures created in: 0.000 seconds 253s 253s Hashing NZ_GG705074.fna forwards 253s 0%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Hashing NZ_GG705074.fna backwards 253s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Hashing NZ_GG705074.gbk forwards 253s 0%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Hashing NZ_GG705074.gbk backwards 253s 0%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Initial hashing took: 0.018 seconds 253s Extracting anchors from hash-space. 253s (T -0.082 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 6%. (T -0.060 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 18%. (T -0.057 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 31%. (T -0.049 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 43%. (T -0.043 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 56%. (T -0.031 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 68%. (T -0.019 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 81%. (T -0.007 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 93%. 253s Anchor extraction completed in: 0.094 seconds 253s Total anchors: 0 253s Anchor extraction + merge time: 0.094 seconds 253s Total processing time: 0.266 seconds 253s Writing anchors... 253s Total seeds used in anchors: 16 253s Hash performance: 253s Keys used: 16 out of 16 possible (100.00%). 253s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 253s Average pigeons per pigeon hole: 1 253s Writing 16 repeats...Output writing finished in: 0.018 seconds 253s Total time: 0.284 seconds 253s Murasaki finished! 253s PASSED MURASAKI 253s 253s Testing Genepare on NZ_GG705074.fna 253s 1001 253s PASSED GENEPARSE 253s 253s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 253s Testing mbfa on NZ_GG705074.fna 253s PASSED mbfa 253s 253s Test Murasaki on NZ_GG705075.fna 253s Verbosity level is: 0 253s Writing to: output/test 253s Pattern is: 101 253s Max usable hash bits: 27 253s Hit filter is: 0 253s Hash table type is: EcoHash 253s Hashing every: 1 base 253s Histogram detail is: 0 253s Hashing function is: 3 253s Collision profiling is: disabled 253s Repeats are: unmasked 253s Mergefilter is at: 100 253s Random seed: 1710556541 (automatic) 253s Bitscore output: on 253s Leave status records: no 253s Join neighbors is: off 253s Target memory is: 1.24 GB 253s Retain members is: true 253s Store repeatmap? yes 253s Reverse complement data is generated on the fly 253s Rifts allowed: 0 253s Fuzzy Extension: yes 253s Score by minimum pair: yes 253s Gapped anchors: no 253s Large sequence support is: enabled => seqpos is 8 bytes 253s Murasaki version 1.68.6 (LARGESEQ) 253s Loading NZ_GG705075.fna 253s Read 10982bp (10.72 KBp) in 0.001 seconds (12.9 MBp/s) 253s Done with forward strand (12466bp). Preparing reverse complement... 253s <-> Reversing metdata. 253s Done. 253s Seq NZ_GG705075.fna loaded. 12.17 KB 253s Loading NZ_GG705075.gbk 253s Read 10982bp (10.72 KBp) in 0.001 seconds (7.7 MBp/s) 253s Done with forward strand (12466bp). Preparing reverse complement... 253s <-> Reversing metdata. 253s Done. 253s Seq NZ_GG705075.gbk loaded. 12.17 KB 253s Sequence loading took: 0.003 seconds 253s Forward frequencies: A:32.1526% C:18.9765% G:18.4484% T:30.4225% 253s Global base frequencies: A/T:62.5751% C/G:37.4249% 253s Pat: 3 bases long with weight 2 253s 1 101 253s Computing hash parameters... 253s Using 4 hashbits 253s 0%......... (T -0.131 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.116 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.101 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.087 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.058 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 91%........ 253s Acceptable hash function found after 1000 cycles. 253s Best uses 2/2 bases and has 0 empties from 2 inputs. 253s Score: 0.96875 (cf. worst: -4.51562) 253s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 253s Total correlation penalty: 0 253s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 253s 10 253s == 253s w[ 0]>>29: -.C 253s w[ 0]>>30: A.- 253s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 253s Ecolist (optimistic): Expcted entries per list: 12 253s Ecolist (optimistic): Minimum chunks per list: 3 253s Would take minimum 256.000000 bytes to make perfect hash. 253s Hashing 42.90 KB of sequence requires: 253s ~ linear (in seq length) hashing cost of 91.16 KB 253s ~ linear (in seq length) expected anchor cost of 1.14 MB 253s Initial hash table uses: 256 bytes (4 bits, 16 entries) 253s Expected memory usage (without anchors): 91.41 KB 253s Expected memory usage (with anchors): 1.23 MB 253s Hash parameters computed in 0.148 seconds 253s Creating storage structures: 16 entries in 256 bytes space. 253s Storage structures created in: 0.000 seconds 253s 253s Hashing NZ_GG705075.fna forwards 253s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Hashing NZ_GG705075.fna backwards 253s 0%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Hashing NZ_GG705075.gbk forwards 253s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Hashing NZ_GG705075.gbk backwards 253s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Initial hashing took: 0.008 seconds 253s Extracting anchors from hash-space. 253s (T -0.056 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 6%. (T -0.036 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 18%. (T -0.029 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 31%. (T -0.020 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 43%. (T -0.015 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 56%. (T -0.010 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 68%. (T -0.007 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 81%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 93%. 253s Anchor extraction completed in: 0.036 seconds 253s Total anchors: 0 253s Anchor extraction + merge time: 0.036 seconds 253s Total processing time: 0.195 seconds 253s Writing anchors... 253s Total seeds used in anchors: 16 253s Hash performance: 253s Keys used: 16 out of 16 possible (100.00%). 253s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 253s Average pigeons per pigeon hole: 1 253s Writing 16 repeats...Output writing finished in: 0.008 seconds 253s Total time: 0.203 seconds 253s Murasaki finished! 253s PASSED MURASAKI 253s 253s Testing Genepare on NZ_GG705075.fna 253s 1001 253s PASSED GENEPARSE 253s 253s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 253s Testing mbfa on NZ_GG705075.fna 253s PASSED mbfa 253s 253s Test Murasaki on NZ_GG705076.fna 253s Verbosity level is: 0 253s Writing to: output/test 253s Pattern is: 101 253s Max usable hash bits: 27 253s Hit filter is: 0 253s Hash table type is: EcoHash 253s Hashing every: 1 base 253s Histogram detail is: 0 253s Hashing function is: 3 253s Collision profiling is: disabled 253s Repeats are: unmasked 253s Mergefilter is at: 100 253s Random seed: 1710556541 (automatic) 253s Bitscore output: on 253s Leave status records: no 253s Join neighbors is: off 253s Target memory is: 1.24 GB 253s Retain members is: true 253s Store repeatmap? yes 253s Reverse complement data is generated on the fly 253s Rifts allowed: 0 253s Fuzzy Extension: yes 253s Score by minimum pair: yes 253s Gapped anchors: no 253s Large sequence support is: enabled => seqpos is 8 bytes 253s Murasaki version 1.68.6 (LARGESEQ) 253s Loading NZ_GG705076.fna 253s Read 9733bp (9.50 KBp) in 0.001 seconds (9.3 MBp/s) 253s Done with forward strand (9753bp). Preparing reverse complement... 253s <-> Reversing metdata. 253s Done. 253s Seq NZ_GG705076.fna loaded. 9.52 KB 253s Loading NZ_GG705076.gbk 253s Read 9733bp (9.50 KBp) in 0.001 seconds (9.9 MBp/s) 253s Done with forward strand (9753bp). Preparing reverse complement... 253s <-> Reversing metdata. 253s Done. 253s Seq NZ_GG705076.gbk loaded. 9.52 KB 253s Sequence loading took: 0.003 seconds 253s Forward frequencies: A:30.114% C:17.3122% G:17.2917% T:35.282% 253s Global base frequencies: A/T:65.3961% C/G:34.6039% 253s Pat: 3 bases long with weight 2 253s 1 101 253s Computing hash parameters... 253s Using 4 hashbits 253s 0%......... (T -0.132 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.116 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.102 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.087 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 91%........ 253s Acceptable hash function found after 1000 cycles. 253s Best uses 2/2 bases and has 0 empties from 2 inputs. 253s Score: 0.96875 (cf. worst: -4.51562) 253s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 253s Total correlation penalty: 0 253s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 253s 10 253s == 253s w[ 0]>>29: -.C 253s w[ 0]>>30: A.- 253s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 253s Ecolist (optimistic): Expcted entries per list: 12 253s Ecolist (optimistic): Minimum chunks per list: 3 253s Would take minimum 256.000000 bytes to make perfect hash. 253s Hashing 38.02 KB of sequence requires: 253s ~ linear (in seq length) hashing cost of 80.78 KB 253s ~ linear (in seq length) expected anchor cost of 914.34 KB 253s Initial hash table uses: 256 bytes (4 bits, 16 entries) 253s Expected memory usage (without anchors): 81.03 KB 253s Expected memory usage (with anchors): 995.38 KB 253s Hash parameters computed in 0.148 seconds 253s Creating storage structures: 16 entries in 256 bytes space. 253s Storage structures created in: 0.000 seconds 253s 253s Hashing NZ_GG705076.fna forwards 253s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Hashing NZ_GG705076.fna backwards 253s 0%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Hashing NZ_GG705076.gbk forwards 253s 0%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Hashing NZ_GG705076.gbk backwards 253s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 90%......... 253s Initial hashing took: 0.009 seconds 253s Extracting anchors from hash-space. 253s (T -0.061 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 6%. (T -0.035 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 18%. (T -0.028 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 31%. (T -0.019 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 43%. (T -0.014 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 56%. (T -0.009 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 68%. (T -0.006 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 81%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 93%. 253s Anchor extraction completed in: 0.032 seconds 253s Total anchors: 0 253s Anchor extraction + merge time: 0.032 seconds 253s Total processing time: 0.193 seconds 253s Writing anchors... 253s Total seeds used in anchors: 16 253s Hash performance: 253s Keys used: 16 out of 16 possible (100.00%). 253s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 253s Average pigeons per pigeon hole: 1 253s Writing 16 repeats...Output writing finished in: 0.007 seconds 253s Total time: 0.200 seconds 253s Murasaki finished! 253s PASSED MURASAKI 253s 253s Testing Genepare on NZ_GG705076.fna 253s 1001 253s PASSED GENEPARSE 253s 253s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 253s Testing mbfa on NZ_GG705076.fna 253s PASSED mbfa 253s 253s Test Murasaki on NZ_GG705077.fna 253s Verbosity level is: 0 253s Writing to: output/test 253s Pattern is: 101 253s Max usable hash bits: 27 253s Hit filter is: 0 253s Hash table type is: EcoHash 253s Hashing every: 1 base 253s Histogram detail is: 0 253s Hashing function is: 3 253s Collision profiling is: disabled 253s Repeats are: unmasked 253s Mergefilter is at: 100 253s Random seed: 1710556541 (automatic) 253s Bitscore output: on 253s Leave status records: no 253s Join neighbors is: off 253s Target memory is: 1.24 GB 253s Retain members is: true 253s Store repeatmap? yes 253s Reverse complement data is generated on the fly 253s Rifts allowed: 0 253s Fuzzy Extension: yes 253s Score by minimum pair: yes 253s Gapped anchors: no 253s Large sequence support is: enabled => seqpos is 8 bytes 253s Murasaki version 1.68.6 (LARGESEQ) 253s Loading NZ_GG705077.fna 253s Read 9579bp (9.35 KBp) in 0.001 seconds (12.7 MBp/s) 253s Done with forward strand (9752bp). Preparing reverse complement... 253s <-> Reversing metdata. 253s Done. 253s Seq NZ_GG705077.fna loaded. 9.52 KB 253s Loading NZ_GG705077.gbk 253s Read 9579bp (9.35 KBp) in 0.001 seconds (10.7 MBp/s) 253s Done with forward strand (9752bp). Preparing reverse complement... 253s <-> Reversing metdata. 253s Done. 253s Seq NZ_GG705077.gbk loaded. 9.52 KB 253s Sequence loading took: 0.002 seconds 253s Forward frequencies: A:31.0366% C:19.2713% G:18.2169% T:31.4751% 253s Global base frequencies: A/T:62.5117% C/G:37.4883% 253s Pat: 3 bases long with weight 2 253s 1 101 253s Computing hash parameters... 253s Using 4 hashbits 253s 0%......... (T -0.137 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:41 2024 253s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:41 2024 254s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:41 2024 254s 91%........ 254s Acceptable hash function found after 1000 cycles. 254s Best uses 2/2 bases and has 0 empties from 2 inputs. 254s Score: 0.96875 (cf. worst: -4.51562) 254s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 254s Total correlation penalty: 0 254s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 254s 10 254s == 254s w[ 0]>>29: -.C 254s w[ 0]>>30: A.- 254s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 254s Ecolist (optimistic): Expcted entries per list: 12 254s Ecolist (optimistic): Minimum chunks per list: 3 254s Would take minimum 256.000000 bytes to make perfect hash. 254s Hashing 37.42 KB of sequence requires: 254s ~ linear (in seq length) hashing cost of 79.50 KB 254s ~ linear (in seq length) expected anchor cost of 914.25 KB 254s Initial hash table uses: 256 bytes (4 bits, 16 entries) 254s Expected memory usage (without anchors): 79.75 KB 254s Expected memory usage (with anchors): 994.00 KB 254s Hash parameters computed in 0.150 seconds 254s Creating storage structures: 16 entries in 256 bytes space. 254s Storage structures created in: 0.000 seconds 254s 254s Hashing NZ_GG705077.fna forwards 254s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:41 2024 254s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:41 2024 254s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 254s 90%......... 254s Hashing NZ_GG705077.fna backwards 254s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 254s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:41 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:41 2024 254s 90%......... 254s Hashing NZ_GG705077.gbk forwards 254s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705077.gbk backwards 254s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Initial hashing took: 0.011 seconds 254s Extracting anchors from hash-space. 254s (T -0.046 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 6%. (T -0.031 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 18%. (T -0.025 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 31%. (T -0.018 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 43%. (T -0.014 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 56%. (T -0.009 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 68%. (T -0.006 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 81%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 93%. 254s Anchor extraction completed in: 0.031 seconds 254s Total anchors: 0 254s Anchor extraction + merge time: 0.031 seconds 254s Total processing time: 0.193 seconds 254s Writing anchors... 254s Total seeds used in anchors: 16 254s Hash performance: 254s Keys used: 16 out of 16 possible (100.00%). 254s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 254s Average pigeons per pigeon hole: 1 254s Writing 16 repeats...Output writing finished in: 0.007 seconds 254s Total time: 0.200 seconds 254s Murasaki finished! 254s PASSED MURASAKI 254s 254s Testing Genepare on NZ_GG705077.fna 254s 1001 254s PASSED GENEPARSE 254s 254s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 254s Testing mbfa on NZ_GG705077.fna 254s PASSED mbfa 254s 254s Test Murasaki on NZ_GG705078.fna 254s Verbosity level is: 0 254s Writing to: output/test 254s Pattern is: 101 254s Max usable hash bits: 27 254s Hit filter is: 0 254s Hash table type is: EcoHash 254s Hashing every: 1 base 254s Histogram detail is: 0 254s Hashing function is: 3 254s Collision profiling is: disabled 254s Repeats are: unmasked 254s Mergefilter is at: 100 254s Random seed: 1710556542 (automatic) 254s Bitscore output: on 254s Leave status records: no 254s Join neighbors is: off 254s Target memory is: 1.24 GB 254s Retain members is: true 254s Store repeatmap? yes 254s Reverse complement data is generated on the fly 254s Rifts allowed: 0 254s Fuzzy Extension: yes 254s Score by minimum pair: yes 254s Gapped anchors: no 254s Large sequence support is: enabled => seqpos is 8 bytes 254s Murasaki version 1.68.6 (LARGESEQ) 254s Loading NZ_GG705078.fna 254s Read 9549bp (9.33 KBp) in 0.001 seconds (9.9 MBp/s) 254s Done with forward strand (9578bp). Preparing reverse complement... 254s <-> Reversing metdata. 254s Done. 254s Seq NZ_GG705078.fna loaded. 9.35 KB 254s Loading NZ_GG705078.gbk 254s Read 9549bp (9.33 KBp) in 0.001 seconds (9.3 MBp/s) 254s Done with forward strand (9578bp). Preparing reverse complement... 254s <-> Reversing metdata. 254s Done. 254s Seq NZ_GG705078.gbk loaded. 9.35 KB 254s Sequence loading took: 0.002 seconds 254s Forward frequencies: A:29.6366% C:18.8816% G:17.583% T:33.8988% 254s Global base frequencies: A/T:63.5354% C/G:36.4646% 254s Pat: 3 bases long with weight 2 254s 1 101 254s Computing hash parameters... 254s Using 4 hashbits 254s 0%......... (T -0.135 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.102 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.087 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.058 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 91%........ 254s Acceptable hash function found after 1000 cycles. 254s Best uses 2/2 bases and has 0 empties from 2 inputs. 254s Score: 0.96875 (cf. worst: -4.51562) 254s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 254s Total correlation penalty: 0 254s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 254s 10 254s == 254s w[ 0]>>29: -.C 254s w[ 0]>>30: A.- 254s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 254s Ecolist (optimistic): Expcted entries per list: 12 254s Ecolist (optimistic): Minimum chunks per list: 3 254s Would take minimum 256.000000 bytes to make perfect hash. 254s Hashing 37.30 KB of sequence requires: 254s ~ linear (in seq length) hashing cost of 79.26 KB 254s ~ linear (in seq length) expected anchor cost of 897.94 KB 254s Initial hash table uses: 256 bytes (4 bits, 16 entries) 254s Expected memory usage (without anchors): 79.51 KB 254s Expected memory usage (with anchors): 977.44 KB 254s Hash parameters computed in 0.146 seconds 254s Creating storage structures: 16 entries in 256 bytes space. 254s Storage structures created in: 0.000 seconds 254s 254s Hashing NZ_GG705078.fna forwards 254s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705078.fna backwards 254s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705078.gbk forwards 254s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705078.gbk backwards 254s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Initial hashing took: 0.010 seconds 254s Extracting anchors from hash-space. 254s (T -0.025 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 6%. (T -0.034 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 18%. (T -0.023 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 31%. (T -0.018 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 43%. (T -0.013 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 56%. (T -0.009 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 68%. (T -0.005 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 81%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 93%. 254s Anchor extraction completed in: 0.031 seconds 254s Total anchors: 0 254s Anchor extraction + merge time: 0.031 seconds 254s Total processing time: 0.190 seconds 254s Writing anchors... 254s Total seeds used in anchors: 16 254s Hash performance: 254s Keys used: 16 out of 16 possible (100.00%). 254s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 254s Average pigeons per pigeon hole: 1 254s Writing 16 repeats...Output writing finished in: 0.007 seconds 254s Total time: 0.197 seconds 254s Murasaki finished! 254s PASSED MURASAKI 254s 254s Testing Genepare on NZ_GG705078.fna 254s 1001 254s PASSED GENEPARSE 254s 254s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 254s Testing mbfa on NZ_GG705078.fna 254s PASSED mbfa 254s 254s Test Murasaki on NZ_GG705079.fna 254s Verbosity level is: 0 254s Writing to: output/test 254s Pattern is: 101 254s Max usable hash bits: 27 254s Hit filter is: 0 254s Hash table type is: EcoHash 254s Hashing every: 1 base 254s Histogram detail is: 0 254s Hashing function is: 3 254s Collision profiling is: disabled 254s Repeats are: unmasked 254s Mergefilter is at: 100 254s Random seed: 1710556542 (automatic) 254s Bitscore output: on 254s Leave status records: no 254s Join neighbors is: off 254s Target memory is: 1.24 GB 254s Retain members is: true 254s Store repeatmap? yes 254s Reverse complement data is generated on the fly 254s Rifts allowed: 0 254s Fuzzy Extension: yes 254s Score by minimum pair: yes 254s Gapped anchors: no 254s Large sequence support is: enabled => seqpos is 8 bytes 254s Murasaki version 1.68.6 (LARGESEQ) 254s Loading NZ_GG705079.fna 254s Read 7815bp (7.63 KBp) in 0.001 seconds (9.9 MBp/s) 254s Done with forward strand (9392bp). Preparing reverse complement... 254s <-> Reversing metdata. 254s Done. 254s Seq NZ_GG705079.fna loaded. 9.17 KB 254s Loading NZ_GG705079.gbk 254s Read 7815bp (7.63 KBp) in 0.001 seconds (9.1 MBp/s) 254s Done with forward strand (9392bp). Preparing reverse complement... 254s <-> Reversing metdata. 254s Done. 254s Seq NZ_GG705079.gbk loaded. 9.17 KB 254s Sequence loading took: 0.002 seconds 254s Forward frequencies: A:32.1433% C:19.1555% G:17.3512% T:31.35% 254s Global base frequencies: A/T:63.4933% C/G:36.5067% 254s Pat: 3 bases long with weight 2 254s 1 101 254s Computing hash parameters... 254s Using 4 hashbits 254s 0%......... (T -0.136 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 91%........ 254s Acceptable hash function found after 1000 cycles. 254s Best uses 2/2 bases and has 0 empties from 2 inputs. 254s Score: 0.96875 (cf. worst: -4.51562) 254s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 254s Total correlation penalty: 0 254s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 254s 10 254s == 254s w[ 0]>>29: -.C 254s w[ 0]>>30: A.- 254s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1) 254s Ecolist (optimistic): Expcted entries per list: 11 254s Ecolist (optimistic): Minimum chunks per list: 3 254s Would take minimum 256.000000 bytes to make perfect hash. 254s Hashing 30.53 KB of sequence requires: 254s ~ linear (in seq length) hashing cost of 64.86 KB 254s ~ linear (in seq length) expected anchor cost of 880.50 KB 254s Initial hash table uses: 256 bytes (4 bits, 16 entries) 254s Expected memory usage (without anchors): 65.11 KB 254s Expected memory usage (with anchors): 945.61 KB 254s Hash parameters computed in 0.148 seconds 254s Creating storage structures: 16 entries in 256 bytes space. 254s Storage structures created in: 0.000 seconds 254s 254s Hashing NZ_GG705079.fna forwards 254s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705079.fna backwards 254s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705079.gbk forwards 254s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705079.gbk backwards 254s 0%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Initial hashing took: 0.006 seconds 254s Extracting anchors from hash-space. 254s (T -0.021 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 6%. (T -0.029 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 18%. (T -0.019 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 31%. (T -0.015 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 43%. (T -0.010 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 56%. (T -0.007 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 68%. (T -0.004 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 81%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 93%. 254s Anchor extraction completed in: 0.024 seconds 254s Total anchors: 0 254s Anchor extraction + merge time: 0.024 seconds 254s Total processing time: 0.180 seconds 254s Writing anchors... 254s Total seeds used in anchors: 16 254s Hash performance: 254s Keys used: 16 out of 16 possible (100.00%). 254s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 254s Average pigeons per pigeon hole: 1 254s Writing 16 repeats...Output writing finished in: 0.008 seconds 254s Total time: 0.188 seconds 254s Murasaki finished! 254s PASSED MURASAKI 254s 254s Testing Genepare on NZ_GG705079.fna 254s 1001 254s PASSED GENEPARSE 254s 254s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 254s Testing mbfa on NZ_GG705079.fna 254s PASSED mbfa 254s 254s Test Murasaki on NZ_GG705080.fna 254s Verbosity level is: 0 254s Writing to: output/test 254s Pattern is: 101 254s Max usable hash bits: 27 254s Hit filter is: 0 254s Hash table type is: EcoHash 254s Hashing every: 1 base 254s Histogram detail is: 0 254s Hashing function is: 3 254s Collision profiling is: disabled 254s Repeats are: unmasked 254s Mergefilter is at: 100 254s Random seed: 1710556542 (automatic) 254s Bitscore output: on 254s Leave status records: no 254s Join neighbors is: off 254s Target memory is: 1.24 GB 254s Retain members is: true 254s Store repeatmap? yes 254s Reverse complement data is generated on the fly 254s Rifts allowed: 0 254s Fuzzy Extension: yes 254s Score by minimum pair: yes 254s Gapped anchors: no 254s Large sequence support is: enabled => seqpos is 8 bytes 254s Murasaki version 1.68.6 (LARGESEQ) 254s Loading NZ_GG705080.fna 254s Read 6711bp (6.55 KBp) in 0.001 seconds (9.4 MBp/s) 254s Done with forward strand (6711bp). Preparing reverse complement... 254s <-> Reversing metdata. 254s Done. 254s Seq NZ_GG705080.fna loaded. 6.55 KB 254s Loading NZ_GG705080.gbk 254s Read 6711bp (6.55 KBp) in 0.001 seconds (8.5 MBp/s) 254s Done with forward strand (6711bp). Preparing reverse complement... 254s <-> Reversing metdata. 254s Done. 254s Seq NZ_GG705080.gbk loaded. 6.55 KB 254s Sequence loading took: 0.002 seconds 254s Forward frequencies: A:28.3415% C:19.4308% G:19.5202% T:32.7075% 254s Global base frequencies: A/T:61.049% C/G:38.951% 254s Pat: 3 bases long with weight 2 254s 1 101 254s Computing hash parameters... 254s Using 4 hashbits 254s 0%......... (T -0.135 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 91%........ 254s Acceptable hash function found after 1000 cycles. 254s Best uses 2/2 bases and has 0 empties from 2 inputs. 254s Score: 0.96875 (cf. worst: -4.51562) 254s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 254s Total correlation penalty: 0 254s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 254s 10 254s == 254s w[ 0]>>29: -.C 254s w[ 0]>>30: A.- 254s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 254s Ecolist (optimistic): Expcted entries per list: 11 254s Ecolist (optimistic): Minimum chunks per list: 4 254s Would take minimum 256.000000 bytes to make perfect hash. 254s Hashing 26.21 KB of sequence requires: 254s ~ linear (in seq length) hashing cost of 52.42 KB 254s ~ linear (in seq length) expected anchor cost of 629.16 KB 254s Initial hash table uses: 256 bytes (4 bits, 16 entries) 254s Expected memory usage (without anchors): 52.67 KB 254s Expected memory usage (with anchors): 681.83 KB 254s Hash parameters computed in 0.148 seconds 254s Creating storage structures: 16 entries in 256 bytes space. 254s Storage structures created in: 0.000 seconds 254s 254s Hashing NZ_GG705080.fna forwards 254s 0%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705080.fna backwards 254s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705080.gbk forwards 254s 0%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705080.gbk backwards 254s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Initial hashing took: 0.007 seconds 254s Extracting anchors from hash-space. 254s (T -0.016 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 6%. (T -0.023 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 18%. (T -0.015 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 31%. (T -0.012 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 43%. (T -0.009 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 56%. (T -0.006 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 68%. (T -0.004 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 81%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 93%. 254s Anchor extraction completed in: 0.021 seconds 254s Total anchors: 0 254s Anchor extraction + merge time: 0.021 seconds 254s Total processing time: 0.178 seconds 254s Writing anchors... 254s Total seeds used in anchors: 16 254s Hash performance: 254s Keys used: 16 out of 16 possible (100.00%). 254s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 254s Average pigeons per pigeon hole: 1 254s Writing 16 repeats...Output writing finished in: 0.006 seconds 254s Total time: 0.184 seconds 254s Murasaki finished! 254s PASSED MURASAKI 254s 254s Testing Genepare on NZ_GG705080.fna 254s 1001 254s PASSED GENEPARSE 254s 254s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 254s Testing mbfa on NZ_GG705080.fna 254s PASSED mbfa 254s 254s Test Murasaki on NZ_GG705081.fna 254s Verbosity level is: 0 254s Writing to: output/test 254s Pattern is: 101 254s Max usable hash bits: 27 254s Hit filter is: 0 254s Hash table type is: EcoHash 254s Hashing every: 1 base 254s Histogram detail is: 0 254s Hashing function is: 3 254s Collision profiling is: disabled 254s Repeats are: unmasked 254s Mergefilter is at: 100 254s Random seed: 1710556542 (automatic) 254s Bitscore output: on 254s Leave status records: no 254s Join neighbors is: off 254s Target memory is: 1.24 GB 254s Retain members is: true 254s Store repeatmap? yes 254s Reverse complement data is generated on the fly 254s Rifts allowed: 0 254s Fuzzy Extension: yes 254s Score by minimum pair: yes 254s Gapped anchors: no 254s Large sequence support is: enabled => seqpos is 8 bytes 254s Murasaki version 1.68.6 (LARGESEQ) 254s Loading NZ_GG705081.fna 254s Read 6691bp (6.53 KBp) in 0.001 seconds (11.4 MBp/s) 254s Done with forward strand (6691bp). Preparing reverse complement... 254s <-> Reversing metdata. 254s Done. 254s Seq NZ_GG705081.fna loaded. 6.53 KB 254s Loading NZ_GG705081.gbk 254s Read 6691bp (6.53 KBp) in 0.001 seconds (8.6 MBp/s) 254s Done with forward strand (6691bp). Preparing reverse complement... 254s <-> Reversing metdata. 254s Done. 254s Seq NZ_GG705081.gbk loaded. 6.53 KB 254s Sequence loading took: 0.001 seconds 254s Forward frequencies: A:31.1314% C:16.8286% G:17.6057% T:34.4343% 254s Global base frequencies: A/T:65.5657% C/G:34.4343% 254s Pat: 3 bases long with weight 2 254s 1 101 254s Computing hash parameters... 254s Using 4 hashbits 254s 0%......... (T -0.136 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.119 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 91%........ 254s Acceptable hash function found after 1000 cycles. 254s Best uses 2/2 bases and has 0 empties from 2 inputs. 254s Score: 0.96875 (cf. worst: -4.51562) 254s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 254s Total correlation penalty: 0 254s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 254s 10 254s == 254s w[ 0]>>29: -.C 254s w[ 0]>>30: A.- 254s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 254s Ecolist (optimistic): Expcted entries per list: 11 254s Ecolist (optimistic): Minimum chunks per list: 4 254s Would take minimum 256.000000 bytes to make perfect hash. 254s Hashing 26.14 KB of sequence requires: 254s ~ linear (in seq length) hashing cost of 52.27 KB 254s ~ linear (in seq length) expected anchor cost of 627.28 KB 254s Initial hash table uses: 256 bytes (4 bits, 16 entries) 254s Expected memory usage (without anchors): 52.52 KB 254s Expected memory usage (with anchors): 679.80 KB 254s Hash parameters computed in 0.150 seconds 254s Creating storage structures: 16 entries in 256 bytes space. 254s Storage structures created in: 0.000 seconds 254s 254s Hashing NZ_GG705081.fna forwards 254s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705081.fna backwards 254s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705081.gbk forwards 254s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 254s 90%......... 254s Hashing NZ_GG705081.gbk backwards 255s 0%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 90%......... 255s Initial hashing took: 0.008 seconds 255s Extracting anchors from hash-space. 255s (T -0.016 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 6%. (T -0.026 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 18%. (T -0.016 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 31%. (T -0.013 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 43%. (T -0.009 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 56%. (T -0.006 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 68%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 81%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:42 2024 255s 93%. 255s Anchor extraction completed in: 0.021 seconds 255s Total anchors: 0 255s Anchor extraction + merge time: 0.021 seconds 255s Total processing time: 0.180 seconds 255s Writing anchors... 255s Total seeds used in anchors: 16 255s Hash performance: 255s Keys used: 16 out of 16 possible (100.00%). 255s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 255s Average pigeons per pigeon hole: 1 255s Writing 16 repeats...Output writing finished in: 0.005 seconds 255s Total time: 0.185 seconds 255s Murasaki finished! 255s PASSED MURASAKI 255s 255s Testing Genepare on NZ_GG705081.fna 255s 1001 255s PASSED GENEPARSE 255s 255s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 255s Testing mbfa on NZ_GG705081.fna 255s PASSED mbfa 255s 255s Test Murasaki on NZ_GG705082.fna 255s Verbosity level is: 0 255s Writing to: output/test 255s Pattern is: 101 255s Max usable hash bits: 27 255s Hit filter is: 0 255s Hash table type is: EcoHash 255s Hashing every: 1 base 255s Histogram detail is: 0 255s Hashing function is: 3 255s Collision profiling is: disabled 255s Repeats are: unmasked 255s Mergefilter is at: 100 255s Random seed: 1710556543 (automatic) 255s Bitscore output: on 255s Leave status records: no 255s Join neighbors is: off 255s Target memory is: 1.24 GB 255s Retain members is: true 255s Store repeatmap? yes 255s Reverse complement data is generated on the fly 255s Rifts allowed: 0 255s Fuzzy Extension: yes 255s Score by minimum pair: yes 255s Gapped anchors: no 255s Large sequence support is: enabled => seqpos is 8 bytes 255s Murasaki version 1.68.6 (LARGESEQ) 255s Loading NZ_GG705082.fna 255s Read 6008bp (5.87 KBp) in 0.001 seconds (10.0 MBp/s) 255s Done with forward strand (6008bp). Preparing reverse complement... 255s <-> Reversing metdata. 255s Done. 255s Seq NZ_GG705082.fna loaded. 5.87 KB 255s Loading NZ_GG705082.gbk 255s Read 6008bp (5.87 KBp) in 0.001 seconds (10.2 MBp/s) 255s Done with forward strand (6008bp). Preparing reverse complement... 255s <-> Reversing metdata. 255s Done. 255s Seq NZ_GG705082.gbk loaded. 5.87 KB 255s Sequence loading took: 0.001 seconds 255s Forward frequencies: A:33.0892% C:18.1591% G:17.6265% T:31.1252% 255s Global base frequencies: A/T:64.2144% C/G:35.7856% 255s Pat: 3 bases long with weight 2 255s 1 101 255s Computing hash parameters... 255s Using 4 hashbits 255s 0%......... (T -0.135 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.119 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 91%........ 255s Acceptable hash function found after 1000 cycles. 255s Best uses 2/2 bases and has 0 empties from 2 inputs. 255s Score: 0.96875 (cf. worst: -4.51562) 255s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 255s Total correlation penalty: 0 255s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 255s 10 255s == 255s w[ 0]>>29: -.C 255s w[ 0]>>30: A.- 255s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 255s Ecolist (optimistic): Expcted entries per list: 11 255s Ecolist (optimistic): Minimum chunks per list: 4 255s Would take minimum 256.000000 bytes to make perfect hash. 255s Hashing 23.47 KB of sequence requires: 255s ~ linear (in seq length) hashing cost of 46.94 KB 255s ~ linear (in seq length) expected anchor cost of 563.25 KB 255s Initial hash table uses: 256 bytes (4 bits, 16 entries) 255s Expected memory usage (without anchors): 47.19 KB 255s Expected memory usage (with anchors): 610.44 KB 255s Hash parameters computed in 0.149 seconds 255s Creating storage structures: 16 entries in 256 bytes space. 255s Storage structures created in: 0.000 seconds 255s 255s Hashing NZ_GG705082.fna forwards 255s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705082.fna backwards 255s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705082.gbk forwards 255s 0%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705082.gbk backwards 255s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Initial hashing took: 0.006 seconds 255s Extracting anchors from hash-space. 255s (T -0.015 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 6%. (T -0.010 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 18%. (T -0.012 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 31%. (T -0.010 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 43%. (T -0.009 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 56%. (T -0.006 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 68%. (T -0.004 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 81%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 93%. 255s Anchor extraction completed in: 0.019 seconds 255s Total anchors: 0 255s Anchor extraction + merge time: 0.019 seconds 255s Total processing time: 0.175 seconds 255s Writing anchors... 255s Total seeds used in anchors: 16 255s Hash performance: 255s Keys used: 16 out of 16 possible (100.00%). 255s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 255s Average pigeons per pigeon hole: 1 255s Writing 16 repeats...Output writing finished in: 0.005 seconds 255s Total time: 0.180 seconds 255s Murasaki finished! 255s PASSED MURASAKI 255s 255s Testing Genepare on NZ_GG705082.fna 255s 1001 255s PASSED GENEPARSE 255s 255s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 255s Testing mbfa on NZ_GG705082.fna 255s PASSED mbfa 255s 255s Test Murasaki on NZ_GG705083.fna 255s Verbosity level is: 0 255s Writing to: output/test 255s Pattern is: 101 255s Max usable hash bits: 27 255s Hit filter is: 0 255s Hash table type is: EcoHash 255s Hashing every: 1 base 255s Histogram detail is: 0 255s Hashing function is: 3 255s Collision profiling is: disabled 255s Repeats are: unmasked 255s Mergefilter is at: 100 255s Random seed: 1710556543 (automatic) 255s Bitscore output: on 255s Leave status records: no 255s Join neighbors is: off 255s Target memory is: 1.24 GB 255s Retain members is: true 255s Store repeatmap? yes 255s Reverse complement data is generated on the fly 255s Rifts allowed: 0 255s Fuzzy Extension: yes 255s Score by minimum pair: yes 255s Gapped anchors: no 255s Large sequence support is: enabled => seqpos is 8 bytes 255s Murasaki version 1.68.6 (LARGESEQ) 255s Loading NZ_GG705083.fna 255s Read 5476bp (5.35 KBp) in 0.001 seconds (10.3 MBp/s) 255s Done with forward strand (5476bp). Preparing reverse complement... 255s <-> Reversing metdata. 255s Done. 255s Seq NZ_GG705083.fna loaded. 5.35 KB 255s Loading NZ_GG705083.gbk 255s Read 5476bp (5.35 KBp) in 0.001 seconds (6.5 MBp/s) 255s Done with forward strand (5476bp). Preparing reverse complement... 255s <-> Reversing metdata. 255s Done. 255s Seq NZ_GG705083.gbk loaded. 5.35 KB 255s Sequence loading took: 0.002 seconds 255s Forward frequencies: A:28.7071% C:18.6815% G:17.7137% T:34.8977% 255s Global base frequencies: A/T:63.6048% C/G:36.3952% 255s Pat: 3 bases long with weight 2 255s 1 101 255s Computing hash parameters... 255s Using 4 hashbits 255s 0%......... (T -0.136 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 91%........ 255s Acceptable hash function found after 1000 cycles. 255s Best uses 2/2 bases and has 0 empties from 2 inputs. 255s Score: 0.96875 (cf. worst: -4.51562) 255s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 255s Total correlation penalty: 0 255s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 255s 10 255s == 255s w[ 0]>>29: -.C 255s w[ 0]>>30: A.- 255s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 255s Ecolist (optimistic): Expcted entries per list: 11 255s Ecolist (optimistic): Minimum chunks per list: 4 255s Would take minimum 256.000000 bytes to make perfect hash. 255s Hashing 21.39 KB of sequence requires: 255s ~ linear (in seq length) hashing cost of 42.78 KB 255s ~ linear (in seq length) expected anchor cost of 513.38 KB 255s Initial hash table uses: 256 bytes (4 bits, 16 entries) 255s Expected memory usage (without anchors): 43.03 KB 255s Expected memory usage (with anchors): 556.41 KB 255s Hash parameters computed in 0.148 seconds 255s Creating storage structures: 16 entries in 256 bytes space. 255s Storage structures created in: 0.000 seconds 255s 255s Hashing NZ_GG705083.fna forwards 255s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705083.fna backwards 255s 0%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705083.gbk forwards 255s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705083.gbk backwards 255s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Initial hashing took: 0.007 seconds 255s Extracting anchors from hash-space. 255s (T -0.014 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 6%. (T -0.008 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 18%. (T -0.010 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 31%. (T -0.009 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 43%. (T -0.008 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 56%. (T -0.006 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 68%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 81%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 93%. 255s Anchor extraction completed in: 0.017 seconds 255s Total anchors: 0 255s Anchor extraction + merge time: 0.017 seconds 255s Total processing time: 0.174 seconds 255s Writing anchors... 255s Total seeds used in anchors: 16 255s Hash performance: 255s Keys used: 16 out of 16 possible (100.00%). 255s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 255s Average pigeons per pigeon hole: 1 255s Writing 16 repeats...Output writing finished in: 0.005 seconds 255s Total time: 0.179 seconds 255s Murasaki finished! 255s PASSED MURASAKI 255s 255s Testing Genepare on NZ_GG705083.fna 255s 1001 255s PASSED GENEPARSE 255s 255s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 255s Testing mbfa on NZ_GG705083.fna 255s PASSED mbfa 255s 255s Test Murasaki on NZ_GG705084.fna 255s Verbosity level is: 0 255s Writing to: output/test 255s Pattern is: 101 255s Max usable hash bits: 27 255s Hit filter is: 0 255s Hash table type is: EcoHash 255s Hashing every: 1 base 255s Histogram detail is: 0 255s Hashing function is: 3 255s Collision profiling is: disabled 255s Repeats are: unmasked 255s Mergefilter is at: 100 255s Random seed: 1710556543 (automatic) 255s Bitscore output: on 255s Leave status records: no 255s Join neighbors is: off 255s Target memory is: 1.24 GB 255s Retain members is: true 255s Store repeatmap? yes 255s Reverse complement data is generated on the fly 255s Rifts allowed: 0 255s Fuzzy Extension: yes 255s Score by minimum pair: yes 255s Gapped anchors: no 255s Large sequence support is: enabled => seqpos is 8 bytes 255s Murasaki version 1.68.6 (LARGESEQ) 255s Loading NZ_GG705084.fna 255s Read 5223bp (5.10 KBp) in 0.001 seconds (9.1 MBp/s) 255s Done with forward strand (5223bp). Preparing reverse complement... 255s <-> Reversing metdata. 255s Done. 255s Seq NZ_GG705084.fna loaded. 5.10 KB 255s Loading NZ_GG705084.gbk 255s Read 5223bp (5.10 KBp) in 0.001 seconds (6.1 MBp/s) 255s Done with forward strand (5223bp). Preparing reverse complement... 255s <-> Reversing metdata. 255s Done. 255s Seq NZ_GG705084.gbk loaded. 5.10 KB 255s Sequence loading took: 0.001 seconds 255s Forward frequencies: A:27.8384% C:19.7588% G:16.906% T:35.4968% 255s Global base frequencies: A/T:63.3352% C/G:36.6648% 255s Pat: 3 bases long with weight 2 255s 1 101 255s Computing hash parameters... 255s Using 4 hashbits 255s 0%......... (T -0.135 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.119 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 91%........ 255s Acceptable hash function found after 1000 cycles. 255s Best uses 2/2 bases and has 0 empties from 2 inputs. 255s Score: 0.96875 (cf. worst: -4.51562) 255s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 255s Total correlation penalty: 0 255s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 255s 10 255s == 255s w[ 0]>>29: -.C 255s w[ 0]>>30: A.- 255s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 255s Ecolist (optimistic): Expcted entries per list: 11 255s Ecolist (optimistic): Minimum chunks per list: 4 255s Would take minimum 256.000000 bytes to make perfect hash. 255s Hashing 20.40 KB of sequence requires: 255s ~ linear (in seq length) hashing cost of 40.80 KB 255s ~ linear (in seq length) expected anchor cost of 489.66 KB 255s Initial hash table uses: 256 bytes (4 bits, 16 entries) 255s Expected memory usage (without anchors): 41.05 KB 255s Expected memory usage (with anchors): 530.70 KB 255s Hash parameters computed in 0.149 seconds 255s Creating storage structures: 16 entries in 256 bytes space. 255s Storage structures created in: 0.000 seconds 255s 255s Hashing NZ_GG705084.fna forwards 255s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705084.fna backwards 255s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705084.gbk forwards 255s 0%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705084.gbk backwards 255s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Initial hashing took: 0.005 seconds 255s Extracting anchors from hash-space. 255s (T -0.013 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 6%. (T -0.008 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 18%. (T -0.010 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 31%. (T -0.009 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 43%. (T -0.007 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 56%. (T -0.005 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 68%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 81%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 93%. 255s Anchor extraction completed in: 0.016 seconds 255s Total anchors: 0 255s Anchor extraction + merge time: 0.016 seconds 255s Total processing time: 0.172 seconds 255s Writing anchors... 255s Total seeds used in anchors: 16 255s Hash performance: 255s Keys used: 16 out of 16 possible (100.00%). 255s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 255s Average pigeons per pigeon hole: 1 255s Writing 16 repeats...Output writing finished in: 0.005 seconds 255s Total time: 0.176 seconds 255s Murasaki finished! 255s PASSED MURASAKI 255s 255s Testing Genepare on NZ_GG705084.fna 255s 1001 255s PASSED GENEPARSE 255s 255s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 255s Testing mbfa on NZ_GG705084.fna 255s PASSED mbfa 255s 255s Test Murasaki on NZ_GG705085.fna 255s Verbosity level is: 0 255s Writing to: output/test 255s Pattern is: 101 255s Max usable hash bits: 27 255s Hit filter is: 0 255s Hash table type is: EcoHash 255s Hashing every: 1 base 255s Histogram detail is: 0 255s Hashing function is: 3 255s Collision profiling is: disabled 255s Repeats are: unmasked 255s Mergefilter is at: 100 255s Random seed: 1710556543 (automatic) 255s Bitscore output: on 255s Leave status records: no 255s Join neighbors is: off 255s Target memory is: 1.24 GB 255s Retain members is: true 255s Store repeatmap? yes 255s Reverse complement data is generated on the fly 255s Rifts allowed: 0 255s Fuzzy Extension: yes 255s Score by minimum pair: yes 255s Gapped anchors: no 255s Large sequence support is: enabled => seqpos is 8 bytes 255s Murasaki version 1.68.6 (LARGESEQ) 255s Loading NZ_GG705085.fna 255s Read 4549bp (4.44 KBp) in 0.001 seconds (6.5 MBp/s) 255s Done with forward strand (5055bp). Preparing reverse complement... 255s <-> Reversing metdata. 255s Done. 255s Seq NZ_GG705085.fna loaded. 4.94 KB 255s Loading NZ_GG705085.gbk 255s Read 4549bp (4.44 KBp) in 0.001 seconds (6.3 MBp/s) 255s Done with forward strand (5055bp). Preparing reverse complement... 255s <-> Reversing metdata. 255s Done. 255s Seq NZ_GG705085.gbk loaded. 4.94 KB 255s Sequence loading took: 0.002 seconds 255s Forward frequencies: A:26.6212% C:21.1255% G:30.0286% T:22.2247% 255s Global base frequencies: A/T:48.8459% C/G:51.1541% 255s Pat: 3 bases long with weight 2 255s 1 101 255s Computing hash parameters... 255s Using 4 hashbits 255s 0%......... (T -0.138 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.104 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 91%........ 255s Acceptable hash function found after 1000 cycles. 255s Best uses 2/2 bases and has 0 empties from 2 inputs. 255s Score: 0.96875 (cf. worst: -4.51562) 255s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 255s Total correlation penalty: 0 255s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 255s 10 255s == 255s w[ 0]>>29: -.C 255s w[ 0]>>30: A.- 255s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 255s Ecolist (optimistic): Expcted entries per list: 11 255s Ecolist (optimistic): Minimum chunks per list: 4 255s Would take minimum 256.000000 bytes to make perfect hash. 255s Hashing 17.77 KB of sequence requires: 255s ~ linear (in seq length) hashing cost of 35.53 KB 255s ~ linear (in seq length) expected anchor cost of 473.91 KB 255s Initial hash table uses: 256 bytes (4 bits, 16 entries) 255s Expected memory usage (without anchors): 35.78 KB 255s Expected memory usage (with anchors): 509.69 KB 255s Hash parameters computed in 0.150 seconds 255s Creating storage structures: 16 entries in 256 bytes space. 255s Storage structures created in: 0.000 seconds 255s 255s Hashing NZ_GG705085.fna forwards 255s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705085.fna backwards 255s 0%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705085.gbk forwards 255s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Hashing NZ_GG705085.gbk backwards 255s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 90%......... 255s Initial hashing took: 0.003 seconds 255s Extracting anchors from hash-space. 255s (T -0.013 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 6%. (T -0.012 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 18%. (T -0.010 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 31%. (T -0.008 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 43%. (T -0.006 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 56%. (T -0.004 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 68%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 81%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:43 2024 255s 93%. 255s Anchor extraction completed in: 0.013 seconds 255s Total anchors: 0 255s Anchor extraction + merge time: 0.013 seconds 255s Total processing time: 0.168 seconds 255s Writing anchors... 255s Total seeds used in anchors: 16 255s Hash performance: 255s Keys used: 16 out of 16 possible (100.00%). 255s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 255s Average pigeons per pigeon hole: 1 255s Writing 16 repeats...Output writing finished in: 0.003 seconds 255s Total time: 0.172 seconds 255s Murasaki finished! 255s PASSED MURASAKI 255s 255s Testing Genepare on NZ_GG705085.fna 255s 1001 255s PASSED GENEPARSE 255s 255s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 255s Testing mbfa on NZ_GG705085.fna 255s PASSED mbfa 255s 255s Test Murasaki on NZ_GG705086.fna 255s Verbosity level is: 0 255s Writing to: output/test 255s Pattern is: 101 255s Max usable hash bits: 27 255s Hit filter is: 0 255s Hash table type is: EcoHash 255s Hashing every: 1 base 255s Histogram detail is: 0 255s Hashing function is: 3 255s Collision profiling is: disabled 255s Repeats are: unmasked 255s Mergefilter is at: 100 255s Random seed: 1710556543 (automatic) 255s Bitscore output: on 255s Leave status records: no 255s Join neighbors is: off 255s Target memory is: 1.24 GB 255s Retain members is: true 255s Store repeatmap? yes 255s Reverse complement data is generated on the fly 255s Rifts allowed: 0 255s Fuzzy Extension: yes 255s Score by minimum pair: yes 255s Gapped anchors: no 255s Large sequence support is: enabled => seqpos is 8 bytes 255s Murasaki version 1.68.6 (LARGESEQ) 255s Loading NZ_GG705086.fna 255s Read 4868bp (4.75 KBp) in 0.001 seconds (7.6 MBp/s) 255s Done with forward strand (4868bp). Preparing reverse complement... 255s <-> Reversing metdata. 255s Done. 255s Seq NZ_GG705086.fna loaded. 4.75 KB 255s Loading NZ_GG705086.gbk 255s Read 4868bp (4.75 KBp) in 0.001 seconds (8.0 MBp/s) 255s Done with forward strand (4868bp). Preparing reverse complement... 255s <-> Reversing metdata. 255s Done. 255s Seq NZ_GG705086.gbk loaded. 4.75 KB 255s Sequence loading took: 0.001 seconds 255s Forward frequencies: A:26.9104% C:22.5349% G:22.4938% T:28.0608% 255s Global base frequencies: A/T:54.9712% C/G:45.0288% 255s Pat: 3 bases long with weight 2 255s 1 101 255s Computing hash parameters... 255s Using 4 hashbits 255s 0%......... (T -0.142 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.123 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.106 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.091 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 91%........ 256s Acceptable hash function found after 1000 cycles. 256s Best uses 2/2 bases and has 0 empties from 2 inputs. 256s Score: 0.96875 (cf. worst: -4.51562) 256s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 256s Total correlation penalty: 0 256s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 256s 10 256s == 256s w[ 0]>>29: -.C 256s w[ 0]>>30: A.- 256s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 256s Ecolist (optimistic): Expcted entries per list: 11 256s Ecolist (optimistic): Minimum chunks per list: 4 256s Would take minimum 256.000000 bytes to make perfect hash. 256s Hashing 19.02 KB of sequence requires: 256s ~ linear (in seq length) hashing cost of 38.03 KB 256s ~ linear (in seq length) expected anchor cost of 456.38 KB 256s Initial hash table uses: 256 bytes (4 bits, 16 entries) 256s Expected memory usage (without anchors): 38.28 KB 256s Expected memory usage (with anchors): 494.66 KB 256s Hash parameters computed in 0.152 seconds 256s Creating storage structures: 16 entries in 256 bytes space. 256s Storage structures created in: 0.000 seconds 256s 256s Hashing NZ_GG705086.fna forwards 256s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705086.fna backwards 256s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705086.gbk forwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705086.gbk backwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Initial hashing took: 0.004 seconds 256s Extracting anchors from hash-space. 256s (T -0.014 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 6%. (T -0.012 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 18%. (T -0.010 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 31%. (T -0.008 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 43%. (T -0.007 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 56%. (T -0.005 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 68%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 81%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 93%. 256s Anchor extraction completed in: 0.014 seconds 256s Total anchors: 0 256s Anchor extraction + merge time: 0.014 seconds 256s Total processing time: 0.172 seconds 256s Writing anchors... 256s Total seeds used in anchors: 16 256s Hash performance: 256s Keys used: 16 out of 16 possible (100.00%). 256s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 256s Average pigeons per pigeon hole: 1 256s Writing 16 repeats...Output writing finished in: 0.004 seconds 256s Total time: 0.176 seconds 256s Murasaki finished! 256s PASSED MURASAKI 256s 256s Testing Genepare on NZ_GG705086.fna 256s 1001 256s PASSED GENEPARSE 256s 256s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 256s Testing mbfa on NZ_GG705086.fna 256s PASSED mbfa 256s 256s Test Murasaki on NZ_GG705087.fna 256s Verbosity level is: 0 256s Writing to: output/test 256s Pattern is: 101 256s Max usable hash bits: 27 256s Hit filter is: 0 256s Hash table type is: EcoHash 256s Hashing every: 1 base 256s Histogram detail is: 0 256s Hashing function is: 3 256s Collision profiling is: disabled 256s Repeats are: unmasked 256s Mergefilter is at: 100 256s Random seed: 1710556544 (automatic) 256s Bitscore output: on 256s Leave status records: no 256s Join neighbors is: off 256s Target memory is: 1.24 GB 256s Retain members is: true 256s Store repeatmap? yes 256s Reverse complement data is generated on the fly 256s Rifts allowed: 0 256s Fuzzy Extension: yes 256s Score by minimum pair: yes 256s Gapped anchors: no 256s Large sequence support is: enabled => seqpos is 8 bytes 256s Murasaki version 1.68.6 (LARGESEQ) 256s Loading NZ_GG705087.fna 256s Read 4863bp (4.75 KBp) in 0.001 seconds (7.5 MBp/s) 256s Done with forward strand (4863bp). Preparing reverse complement... 256s <-> Reversing metdata. 256s Done. 256s Seq NZ_GG705087.fna loaded. 4.75 KB 256s Loading NZ_GG705087.gbk 256s Read 4863bp (4.75 KBp) in 0.001 seconds (6.7 MBp/s) 256s Done with forward strand (4863bp). Preparing reverse complement... 256s <-> Reversing metdata. 256s Done. 256s Seq NZ_GG705087.gbk loaded. 4.75 KB 256s Sequence loading took: 0.002 seconds 256s Forward frequencies: A:34.0119% C:17.4378% G:19.2679% T:29.2823% 256s Global base frequencies: A/T:63.2943% C/G:36.7057% 256s Pat: 3 bases long with weight 2 256s 1 101 256s Computing hash parameters... 256s Using 4 hashbits 256s 0%......... (T -0.137 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 91%........ 256s Acceptable hash function found after 1000 cycles. 256s Best uses 2/2 bases and has 0 empties from 2 inputs. 256s Score: 0.96875 (cf. worst: -4.51562) 256s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 256s Total correlation penalty: 0 256s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 256s 10 256s == 256s w[ 0]>>29: -.C 256s w[ 0]>>30: A.- 256s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1) 256s Ecolist (optimistic): Expcted entries per list: 11 256s Ecolist (optimistic): Minimum chunks per list: 4 256s Would take minimum 256.000000 bytes to make perfect hash. 256s Hashing 19.00 KB of sequence requires: 256s ~ linear (in seq length) hashing cost of 37.98 KB 256s ~ linear (in seq length) expected anchor cost of 455.91 KB 256s Initial hash table uses: 256 bytes (4 bits, 16 entries) 256s Expected memory usage (without anchors): 38.23 KB 256s Expected memory usage (with anchors): 494.14 KB 256s Hash parameters computed in 0.149 seconds 256s Creating storage structures: 16 entries in 256 bytes space. 256s Storage structures created in: 0.000 seconds 256s 256s Hashing NZ_GG705087.fna forwards 256s 0%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705087.fna backwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705087.gbk forwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705087.gbk backwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Initial hashing took: 0.006 seconds 256s Extracting anchors from hash-space. 256s (T -0.014 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 6%. (T -0.016 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 18%. (T -0.011 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 31%. (T -0.009 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 43%. (T -0.006 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 56%. (T -0.004 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 68%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 81%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 93%. 256s Anchor extraction completed in: 0.015 seconds 256s Total anchors: 0 256s Anchor extraction + merge time: 0.015 seconds 256s Total processing time: 0.172 seconds 256s Writing anchors... 256s Total seeds used in anchors: 16 256s Hash performance: 256s Keys used: 16 out of 16 possible (100.00%). 256s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 256s Average pigeons per pigeon hole: 1 256s Writing 16 repeats...Output writing finished in: 0.004 seconds 256s Total time: 0.176 seconds 256s Murasaki finished! 256s PASSED MURASAKI 256s 256s Testing Genepare on NZ_GG705087.fna 256s 1001 256s PASSED GENEPARSE 256s 256s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 256s Testing mbfa on NZ_GG705087.fna 256s PASSED mbfa 256s 256s Test Murasaki on NZ_GG705088.fna 256s Verbosity level is: 0 256s Writing to: output/test 256s Pattern is: 101 256s Max usable hash bits: 27 256s Hit filter is: 0 256s Hash table type is: EcoHash 256s Hashing every: 1 base 256s Histogram detail is: 0 256s Hashing function is: 3 256s Collision profiling is: disabled 256s Repeats are: unmasked 256s Mergefilter is at: 100 256s Random seed: 1710556544 (automatic) 256s Bitscore output: on 256s Leave status records: no 256s Join neighbors is: off 256s Target memory is: 1.24 GB 256s Retain members is: true 256s Store repeatmap? yes 256s Reverse complement data is generated on the fly 256s Rifts allowed: 0 256s Fuzzy Extension: yes 256s Score by minimum pair: yes 256s Gapped anchors: no 256s Large sequence support is: enabled => seqpos is 8 bytes 256s Murasaki version 1.68.6 (LARGESEQ) 256s Loading NZ_GG705088.fna 256s Read 2146bp (2.10 KBp) in 0.001 seconds (3.9 MBp/s) 256s Done with forward strand (2146bp). Preparing reverse complement... 256s <-> Reversing metdata. 256s Done. 256s Seq NZ_GG705088.fna loaded. 2.10 KB 256s Loading NZ_GG705088.gbk 256s Read 2146bp (2.10 KBp) in 0.001 seconds (3.7 MBp/s) 256s Done with forward strand (2146bp). Preparing reverse complement... 256s <-> Reversing metdata. 256s Done. 256s Seq NZ_GG705088.gbk loaded. 2.10 KB 256s Sequence loading took: 0.002 seconds 256s Forward frequencies: A:27.4464% C:18.1733% G:20.876% T:33.5042% 256s Global base frequencies: A/T:60.9506% C/G:39.0494% 256s Pat: 3 bases long with weight 2 256s 1 101 256s Computing hash parameters... 256s Using 4 hashbits 256s 0%......... (T -0.142 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.123 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.106 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 91%........ 256s Acceptable hash function found after 1000 cycles. 256s Best uses 2/2 bases and has 0 empties from 2 inputs. 256s Score: 0.96875 (cf. worst: -4.51562) 256s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 256s Total correlation penalty: 0 256s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 256s 10 256s == 256s w[ 0]>>29: -.C 256s w[ 0]>>30: A.- 256s Ecolist (optimistic): (seqbits: 2 idxbits: 13 minBlocks: 1 initblocks: 1) 256s Ecolist (optimistic): Expcted entries per list: 10 256s Ecolist (optimistic): Minimum chunks per list: 4 256s Would take minimum 256.000000 bytes to make perfect hash. 256s Hashing 8.38 KB of sequence requires: 256s ~ linear (in seq length) hashing cost of 15.72 KB 256s ~ linear (in seq length) expected anchor cost of 201.19 KB 256s Initial hash table uses: 256 bytes (4 bits, 16 entries) 256s Expected memory usage (without anchors): 15.97 KB 256s Expected memory usage (with anchors): 217.16 KB 256s Hash parameters computed in 0.150 seconds 256s Creating storage structures: 16 entries in 256 bytes space. 256s Storage structures created in: 0.000 seconds 256s 256s Hashing NZ_GG705088.fna forwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705088.fna backwards 256s 0%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705088.gbk forwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705088.gbk backwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Initial hashing took: 0.005 seconds 256s Extracting anchors from hash-space. 256s (T -0.005 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 6%. (T -0.007 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 18%. (T -0.005 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 31%. (T -0.004 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 43%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 56%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 68%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 93%. 256s Anchor extraction completed in: 0.006 seconds 256s Total anchors: 0 256s Anchor extraction + merge time: 0.007 seconds 256s Total processing time: 0.164 seconds 256s Writing anchors... 256s Total seeds used in anchors: 16 256s Hash performance: 256s Keys used: 16 out of 16 possible (100.00%). 256s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 256s Average pigeons per pigeon hole: 1 256s Writing 16 repeats...Output writing finished in: 0.002 seconds 256s Total time: 0.166 seconds 256s Murasaki finished! 256s PASSED MURASAKI 256s 256s Testing Genepare on NZ_GG705088.fna 256s 1001 256s PASSED GENEPARSE 256s 256s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 256s Testing mbfa on NZ_GG705088.fna 256s PASSED mbfa 256s 256s Test Murasaki on NZ_GG705089.fna 256s Verbosity level is: 0 256s Writing to: output/test 256s Pattern is: 101 256s Max usable hash bits: 27 256s Hit filter is: 0 256s Hash table type is: EcoHash 256s Hashing every: 1 base 256s Histogram detail is: 0 256s Hashing function is: 3 256s Collision profiling is: disabled 256s Repeats are: unmasked 256s Mergefilter is at: 100 256s Random seed: 1710556544 (automatic) 256s Bitscore output: on 256s Leave status records: no 256s Join neighbors is: off 256s Target memory is: 1.24 GB 256s Retain members is: true 256s Store repeatmap? yes 256s Reverse complement data is generated on the fly 256s Rifts allowed: 0 256s Fuzzy Extension: yes 256s Score by minimum pair: yes 256s Gapped anchors: no 256s Large sequence support is: enabled => seqpos is 8 bytes 256s Murasaki version 1.68.6 (LARGESEQ) 256s Loading NZ_GG705089.fna 256s Read 1396bp (1.36 KBp) in 0.000 seconds (2.8 MBp/s) 256s Done with forward strand (1396bp). Preparing reverse complement... 256s <-> Reversing metdata. 256s Done. 256s Seq NZ_GG705089.fna loaded. 1.36 KB 256s Loading NZ_GG705089.gbk 256s Read 1396bp (1.36 KBp) in 0.000 seconds (3.0 MBp/s) 256s Done with forward strand (1396bp). Preparing reverse complement... 256s <-> Reversing metdata. 256s Done. 256s Seq NZ_GG705089.gbk loaded. 1.36 KB 256s Sequence loading took: 0.002 seconds 256s Forward frequencies: A:33.4527% C:18.0516% G:19.8424% T:28.6533% 256s Global base frequencies: A/T:62.106% C/G:37.894% 256s Pat: 3 bases long with weight 2 256s 1 101 256s Computing hash parameters... 256s Using 4 hashbits 256s 0%......... (T -0.143 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.123 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 91%........ 256s Acceptable hash function found after 1000 cycles. 256s Best uses 2/2 bases and has 0 empties from 2 inputs. 256s Score: 0.96875 (cf. worst: -4.51562) 256s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 256s Total correlation penalty: 0 256s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 256s 10 256s == 256s w[ 0]>>29: -.C 256s w[ 0]>>30: A.- 256s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 256s Ecolist (optimistic): Expcted entries per list: 9 256s Ecolist (optimistic): Minimum chunks per list: 4 256s Would take minimum 256.000000 bytes to make perfect hash. 256s Hashing 5.45 KB of sequence requires: 256s ~ linear (in seq length) hashing cost of 9.54 KB 256s ~ linear (in seq length) expected anchor cost of 130.88 KB 256s Initial hash table uses: 256 bytes (4 bits, 16 entries) 256s Expected memory usage (without anchors): 9.79 KB 256s Expected memory usage (with anchors): 140.67 KB 256s Hash parameters computed in 0.149 seconds 256s Creating storage structures: 16 entries in 256 bytes space. 256s Storage structures created in: 0.000 seconds 256s 256s Hashing NZ_GG705089.fna forwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705089.fna backwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705089.gbk forwards 256s 0%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Hashing NZ_GG705089.gbk backwards 256s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 90%......... 256s Initial hashing took: 0.005 seconds 256s Extracting anchors from hash-space. 256s (T -0.003 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 6%. (T -0.004 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 31%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 43%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 68%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 93%. 256s Anchor extraction completed in: 0.004 seconds 256s Total anchors: 0 256s Anchor extraction + merge time: 0.004 seconds 256s Total processing time: 0.160 seconds 256s Writing anchors... 256s Total seeds used in anchors: 16 256s Hash performance: 256s Keys used: 16 out of 16 possible (100.00%). 256s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 256s Average pigeons per pigeon hole: 1 256s Writing 16 repeats...Output writing finished in: 0.001 seconds 256s Total time: 0.162 seconds 256s Murasaki finished! 256s PASSED MURASAKI 256s 256s Testing Genepare on NZ_GG705089.fna 256s 397 256s PASSED GENEPARSE 256s 256s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 256s Testing mbfa on NZ_GG705089.fna 256s PASSED mbfa 256s 256s Test Murasaki on NZ_GG705090.fna 256s Verbosity level is: 0 256s Writing to: output/test 256s Pattern is: 101 256s Max usable hash bits: 27 256s Hit filter is: 0 256s Hash table type is: EcoHash 256s Hashing every: 1 base 256s Histogram detail is: 0 256s Hashing function is: 3 256s Collision profiling is: disabled 256s Repeats are: unmasked 256s Mergefilter is at: 100 256s Random seed: 1710556544 (automatic) 256s Bitscore output: on 256s Leave status records: no 256s Join neighbors is: off 256s Target memory is: 1.24 GB 256s Retain members is: true 256s Store repeatmap? yes 256s Reverse complement data is generated on the fly 256s Rifts allowed: 0 256s Fuzzy Extension: yes 256s Score by minimum pair: yes 256s Gapped anchors: no 256s Large sequence support is: enabled => seqpos is 8 bytes 256s Murasaki version 1.68.6 (LARGESEQ) 256s Loading NZ_GG705090.fna 256s Read 1374bp (1.34 KBp) in 0.001 seconds (2.5 MBp/s) 256s Done with forward strand (1374bp). Preparing reverse complement... 256s <-> Reversing metdata. 256s Done. 256s Seq NZ_GG705090.fna loaded. 1.34 KB 256s Loading NZ_GG705090.gbk 256s Read 1374bp (1.34 KBp) in 0.000 seconds (3.0 MBp/s) 256s Done with forward strand (1374bp). Preparing reverse complement... 256s <-> Reversing metdata. 256s Done. 256s Seq NZ_GG705090.gbk loaded. 1.34 KB 256s Sequence loading took: 0.001 seconds 256s Forward frequencies: A:29.6215% C:22.7802% G:22.6346% T:24.9636% 256s Global base frequencies: A/T:54.5852% C/G:45.4148% 256s Pat: 3 bases long with weight 2 256s 1 101 256s Computing hash parameters... 256s Using 4 hashbits 256s 0%......... (T -0.140 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 10%......... (T -0.121 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:44 2024 256s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 91%........ 257s Acceptable hash function found after 1000 cycles. 257s Best uses 2/2 bases and has 0 empties from 2 inputs. 257s Score: 0.96875 (cf. worst: -4.51562) 257s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 257s Total correlation penalty: 0 257s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 257s 10 257s == 257s w[ 0]>>29: -.C 257s w[ 0]>>30: A.- 257s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 257s Ecolist (optimistic): Expcted entries per list: 9 257s Ecolist (optimistic): Minimum chunks per list: 4 257s Would take minimum 256.000000 bytes to make perfect hash. 257s Hashing 5.37 KB of sequence requires: 257s ~ linear (in seq length) hashing cost of 9.39 KB 257s ~ linear (in seq length) expected anchor cost of 128.81 KB 257s Initial hash table uses: 256 bytes (4 bits, 16 entries) 257s Expected memory usage (without anchors): 9.64 KB 257s Expected memory usage (with anchors): 138.46 KB 257s Hash parameters computed in 0.150 seconds 257s Creating storage structures: 16 entries in 256 bytes space. 257s Storage structures created in: 0.000 seconds 257s 257s Hashing NZ_GG705090.fna forwards 257s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 10%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 20%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 90%......... 257s Hashing NZ_GG705090.fna backwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 90%......... 257s Hashing NZ_GG705090.gbk forwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 90%......... 257s Hashing NZ_GG705090.gbk backwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 90%......... 257s Initial hashing took: 0.005 seconds 257s Extracting anchors from hash-space. 257s (T -0.003 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 6%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 31%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 43%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 68%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:44 2024 257s 93%. 257s Anchor extraction completed in: 0.004 seconds 257s Total anchors: 0 257s Anchor extraction + merge time: 0.004 seconds 257s Total processing time: 0.161 seconds 257s Writing anchors... 257s Total seeds used in anchors: 16 257s Hash performance: 257s Keys used: 16 out of 16 possible (100.00%). 257s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 257s Average pigeons per pigeon hole: 1 257s Writing 16 repeats...Output writing finished in: 0.002 seconds 257s Total time: 0.163 seconds 257s Murasaki finished! 257s PASSED MURASAKI 257s 257s Testing Genepare on NZ_GG705090.fna 257s 375 257s PASSED GENEPARSE 257s 257s Testing mbfa on NZ_GG705090.fna 257s PASSED mbfa 257s 257s Test Murasaki on NZ_GG705091.fna 257s Verbosity level is: 0 257s Writing to: output/test 257s Pattern is: 101 257s Max usable hash bits: 27 257s Hit filter is: 0 257s Hash table type is: EcoHash 257s Hashing every: 1 base 257s Histogram detail is: 0 257s Hashing function is: 3 257s Collision profiling is: disabled 257s Repeats are: unmasked 257s Mergefilter is at: 100 257s Random seed: 1710556545 (automatic) 257s Bitscore output: on 257s Leave status records: no 257s Join neighbors is: off 257s Target memory is: 1.24 GB 257s Retain members is: true 257s Store repeatmap? yes 257s Reverse complement data is generated on the fly 257s Rifts allowed: 0 257s Fuzzy Extension: yes 257s Score by minimum pair: yes 257s Gapped anchors: no 257s Large sequence support is: enabled => seqpos is 8 bytes 257s Murasaki version 1.68.6 (LARGESEQ) 257s Loading NZ_GG705091.fna 257s Read 1318bp (1.29 KBp) in 0.000 seconds (4.2 MBp/s) 257s Done with forward strand (1318bp). Preparing reverse complement... 257s <-> Reversing metdata. 257s Done. 257s Seq NZ_GG705091.fna loaded. 1.29 KB 257s Loading NZ_GG705091.gbk 257s Read 1318bp (1.29 KBp) in 0.000 seconds (4.1 MBp/s) 257s Done with forward strand (1318bp). Preparing reverse complement... 257s <-> Reversing metdata. 257s Done. 257s Seq NZ_GG705091.gbk loaded. 1.29 KB 257s Sequence loading took: 0.001 seconds 257s Forward frequencies: A:29.742% C:23.8998% G:22.1548% T:24.2033% 257s Global base frequencies: A/T:53.9454% C/G:46.0546% 257s Pat: 3 bases long with weight 2 257s 1 101 257s Computing hash parameters... 257s Using 4 hashbits 257s 0%......dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 257s ... (T -0.147 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.123 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 91%........ 257s Acceptable hash function found after 1000 cycles. 257s Best uses 2/2 bases and has 0 empties from 2 inputs. 257s Score: 0.96875 (cf. worst: -4.51562) 257s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 257s Total correlation penalty: 0 257s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 257s 10 257s == 257s w[ 0]>>29: -.C 257s w[ 0]>>30: A.- 257s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 257s Ecolist (optimistic): Expcted entries per list: 9 257s Ecolist (optimistic): Minimum chunks per list: 4 257s Would take minimum 256.000000 bytes to make perfect hash. 257s Hashing 5.15 KB of sequence requires: 257s ~ linear (in seq length) hashing cost of 9.01 KB 257s ~ linear (in seq length) expected anchor cost of 123.56 KB 257s Initial hash table uses: 256 bytes (4 bits, 16 entries) 257s Expected memory usage (without anchors): 9.26 KB 257s Expected memory usage (with anchors): 132.82 KB 257s Hash parameters computed in 0.149 seconds 257s Creating storage structures: 16 entries in 256 bytes space. 257s Storage structures created in: 0.000 seconds 257s 257s Hashing NZ_GG705091.fna forwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Hashing NZ_GG705091.fna backwards 257s 0%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Hashing NZ_GG705091.gbk forwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Hashing NZ_GG705091.gbk backwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Initial hashing took: 0.003 seconds 257s Extracting anchors from hash-space. 257s (T -0.003 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 6%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 31%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 68%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 93%. 257s Anchor extraction completed in: 0.004 seconds 257s Total anchors: 0 257s Anchor extraction + merge time: 0.004 seconds 257s Total processing time: 0.157 seconds 257s Writing anchors... 257s Total seeds used in anchors: 16 257s Hash performance: 257s Keys used: 16 out of 16 possible (100.00%). 257s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 257s Average pigeons per pigeon hole: 1 257s Writing 16 repeats...Output writing finished in: 0.002 seconds 257s Total time: 0.159 seconds 257s Murasaki finished! 257s PASSED MURASAKI 257s 257s Testing Genepare on NZ_GG705091.fna 257s 319 257s PASSED GENEPARSE 257s 257s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 257s Testing mbfa on NZ_GG705091.fna 257s PASSED mbfa 257s 257s Test Murasaki on NZ_GG705092.fna 257s Verbosity level is: 0 257s Writing to: output/test 257s Pattern is: 101 257s Max usable hash bits: 27 257s Hit filter is: 0 257s Hash table type is: EcoHash 257s Hashing every: 1 base 257s Histogram detail is: 0 257s Hashing function is: 3 257s Collision profiling is: disabled 257s Repeats are: unmasked 257s Mergefilter is at: 100 257s Random seed: 1710556545 (automatic) 257s Bitscore output: on 257s Leave status records: no 257s Join neighbors is: off 257s Target memory is: 1.24 GB 257s Retain members is: true 257s Store repeatmap? yes 257s Reverse complement data is generated on the fly 257s Rifts allowed: 0 257s Fuzzy Extension: yes 257s Score by minimum pair: yes 257s Gapped anchors: no 257s Large sequence support is: enabled => seqpos is 8 bytes 257s Murasaki version 1.68.6 (LARGESEQ) 257s Loading NZ_GG705092.fna 257s Read 1283bp (1.25 KBp) in 0.000 seconds (4.0 MBp/s) 257s Done with forward strand (1283bp). Preparing reverse complement... 257s <-> Reversing metdata. 257s Done. 257s Seq NZ_GG705092.fna loaded. 1.25 KB 257s Loading NZ_GG705092.gbk 257s Read 1283bp (1.25 KBp) in 0.000 seconds (4.1 MBp/s) 257s Done with forward strand (1283bp). Preparing reverse complement... 257s <-> Reversing metdata. 257s Done. 257s Seq NZ_GG705092.gbk loaded. 1.25 KB 257s Sequence loading took: 0.001 seconds 257s Forward frequencies: A:23.6945% C:21.0444% G:25.3313% T:29.9299% 257s Global base frequencies: A/T:53.6243% C/G:46.3757% 257s Pat: 3 bases long with weight 2 257s 1 101 257s Computing hash parameters... 257s Using 4 hashbits 257s 0%......... (T -0.140 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.104 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 91%........ 257s Acceptable hash function found after 1000 cycles. 257s Best uses 2/2 bases and has 0 empties from 2 inputs. 257s Score: 0.96875 (cf. worst: -4.51562) 257s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 257s Total correlation penalty: 0 257s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 257s 10 257s == 257s w[ 0]>>29: -.C 257s w[ 0]>>30: A.- 257s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 257s Ecolist (optimistic): Expcted entries per list: 9 257s Ecolist (optimistic): Minimum chunks per list: 4 257s Would take minimum 256.000000 bytes to make perfect hash. 257s Hashing 5.01 KB of sequence requires: 257s ~ linear (in seq length) hashing cost of 8.76 KB 257s ~ linear (in seq length) expected anchor cost of 120.28 KB 257s Initial hash table uses: 256 bytes (4 bits, 16 entries) 257s Expected memory usage (without anchors): 9.01 KB 257s Expected memory usage (with anchors): 129.29 KB 257s Hash parameters computed in 0.149 seconds 257s Creating storage structures: 16 entries in 256 bytes space. 257s Storage structures created in: 0.000 seconds 257s 257s Hashing NZ_GG705092.fna forwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Hashing NZ_GG705092.fna backwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Hashing NZ_GG705092.gbk forwards 257s 0%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Hashing NZ_GG705092.gbk backwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Initial hashing took: 0.005 seconds 257s Extracting anchors from hash-space. 257s (T -0.003 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 6%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 31%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 68%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 93%. 257s Anchor extraction completed in: 0.003 seconds 257s Total anchors: 0 257s Anchor extraction + merge time: 0.004 seconds 257s Total processing time: 0.159 seconds 257s Writing anchors... 257s Total seeds used in anchors: 16 257s Hash performance: 257s Keys used: 16 out of 16 possible (100.00%). 257s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 257s Average pigeons per pigeon hole: 1 257s Writing 16 repeats...Output writing finished in: 0.002 seconds 257s Total time: 0.160 seconds 257s Murasaki finished! 257s PASSED MURASAKI 257s 257s Testing Genepare on NZ_GG705092.fna 257s 284 257s PASSED GENEPARSE 257s 257s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 257s Testing mbfa on NZ_GG705092.fna 257s PASSED mbfa 257s 257s Test Murasaki on NZ_GG705093.fna 257s Verbosity level is: 0 257s Writing to: output/test 257s Pattern is: 101 257s Max usable hash bits: 27 257s Hit filter is: 0 257s Hash table type is: EcoHash 257s Hashing every: 1 base 257s Histogram detail is: 0 257s Hashing function is: 3 257s Collision profiling is: disabled 257s Repeats are: unmasked 257s Mergefilter is at: 100 257s Random seed: 1710556545 (automatic) 257s Bitscore output: on 257s Leave status records: no 257s Join neighbors is: off 257s Target memory is: 1.24 GB 257s Retain members is: true 257s Store repeatmap? yes 257s Reverse complement data is generated on the fly 257s Rifts allowed: 0 257s Fuzzy Extension: yes 257s Score by minimum pair: yes 257s Gapped anchors: no 257s Large sequence support is: enabled => seqpos is 8 bytes 257s Murasaki version 1.68.6 (LARGESEQ) 257s Loading NZ_GG705093.fna 257s Read 1180bp (1.15 KBp) in 0.000 seconds (3.8 MBp/s) 257s Done with forward strand (1180bp). Preparing reverse complement... 257s <-> Reversing metdata. 257s Done. 257s Seq NZ_GG705093.fna loaded. 1.15 KB 257s Loading NZ_GG705093.gbk 257s Read 1180bp (1.15 KBp) in 0.000 seconds (3.9 MBp/s) 257s Done with forward strand (1180bp). Preparing reverse complement... 257s <-> Reversing metdata. 257s Done. 257s Seq NZ_GG705093.gbk loaded. 1.15 KB 257s Sequence loading took: 0.001 seconds 257s Forward frequencies: A:31.9492% C:16.1017% G:19.8305% T:32.1186% 257s Global base frequencies: A/T:64.0678% C/G:35.9322% 257s Pat: 3 bases long with weight 2 257s 1 101 257s Computing hash parameters... 257s Using 4 hashbits 257s 0%......... (T -0.139 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 91%........ 257s Acceptable hash function found after 1000 cycles. 257s Best uses 2/2 bases and has 0 empties from 2 inputs. 257s Score: 0.96875 (cf. worst: -4.51562) 257s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 257s Total correlation penalty: 0 257s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 257s 10 257s == 257s w[ 0]>>29: -.C 257s w[ 0]>>30: A.- 257s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 257s Ecolist (optimistic): Expcted entries per list: 9 257s Ecolist (optimistic): Minimum chunks per list: 4 257s Would take minimum 256.000000 bytes to make perfect hash. 257s Hashing 4.61 KB of sequence requires: 257s ~ linear (in seq length) hashing cost of 8.07 KB 257s ~ linear (in seq length) expected anchor cost of 110.62 KB 257s Initial hash table uses: 256 bytes (4 bits, 16 entries) 257s Expected memory usage (without anchors): 8.32 KB 257s Expected memory usage (with anchors): 118.94 KB 257s Hash parameters computed in 0.151 seconds 257s Creating storage structures: 16 entries in 256 bytes space. 257s Storage structures created in: 0.000 seconds 257s 257s Hashing NZ_GG705093.fna forwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Hashing NZ_GG705093.fna backwards 257s 0%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Hashing NZ_GG705093.gbk forwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Hashing NZ_GG705093.gbk backwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%......... 257s Initial hashing took: 0.003 seconds 257s Extracting anchors from hash-space. 257s (T -0.004 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 93%. 257s Anchor extraction completed in: 0.003 seconds 257s Total anchors: 0 257s Anchor extraction + merge time: 0.003 seconds 257s Total processing time: 0.159 seconds 257s Writing anchors... 257s Total seeds used in anchors: 16 257s Hash performance: 257s Keys used: 16 out of 16 possible (100.00%). 257s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 257s Average pigeons per pigeon hole: 1 257s Writing 16 repeats...Output writing finished in: 0.002 seconds 257s Total time: 0.160 seconds 257s Murasaki finished! 257s PASSED MURASAKI 257s 257s Testing Genepare on NZ_GG705093.fna 257s 181 257s PASSED GENEPARSE 257s 257s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 257s Testing mbfa on NZ_GG705093.fna 257s PASSED mbfa 257s 257s Test Murasaki on NZ_GG705094.fna 257s Verbosity level is: 0 257s Writing to: output/test 257s Pattern is: 101 257s Max usable hash bits: 27 257s Hit filter is: 0 257s Hash table type is: EcoHash 257s Hashing every: 1 base 257s Histogram detail is: 0 257s Hashing function is: 3 257s Collision profiling is: disabled 257s Repeats are: unmasked 257s Mergefilter is at: 100 257s Random seed: 1710556545 (automatic) 257s Bitscore output: on 257s Leave status records: no 257s Join neighbors is: off 257s Target memory is: 1.24 GB 257s Retain members is: true 257s Store repeatmap? yes 257s Reverse complement data is generated on the fly 257s Rifts allowed: 0 257s Fuzzy Extension: yes 257s Score by minimum pair: yes 257s Gapped anchors: no 257s Large sequence support is: enabled => seqpos is 8 bytes 257s Murasaki version 1.68.6 (LARGESEQ) 257s Loading NZ_GG705094.fna 257s Read 1153bp (1.13 KBp) in 0.000 seconds (2.3 MBp/s) 257s Done with forward strand (1153bp). Preparing reverse complement... 257s <-> Reversing metdata. 257s Done. 257s Seq NZ_GG705094.fna loaded. 1.13 KB 257s Loading NZ_GG705094.gbk 257s Read 1153bp (1.13 KBp) in 0.000 seconds (3.3 MBp/s) 257s Done with forward strand (1153bp). Preparing reverse complement... 257s <-> Reversing metdata. 257s Done. 257s Seq NZ_GG705094.gbk loaded. 1.13 KB 257s Sequence loading took: 0.001 seconds 257s Forward frequencies: A:27.8404% C:21.4224% G:19.7745% T:30.9627% 257s Global base frequencies: A/T:58.8031% C/G:41.1969% 257s Pat: 3 bases long with weight 2 257s 1 101 257s Computing hash parameters... 257s Using 4 hashbits 257s 0%......... (T -0.139 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.119 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 91%........ 257s Acceptable hash function found after 1000 cycles. 257s Best uses 2/2 bases and has 0 empties from 2 inputs. 257s Score: 0.96875 (cf. worst: -4.51562) 257s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 257s Total correlation penalty: 0 257s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 257s 10 257s == 257s w[ 0]>>29: -.C 257s w[ 0]>>30: A.- 257s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 257s Ecolist (optimistic): Expcted entries per list: 9 257s Ecolist (optimistic): Minimum chunks per list: 4 257s Would take minimum 256.000000 bytes to make perfect hash. 257s Hashing 4.50 KB of sequence requires: 257s ~ linear (in seq length) hashing cost of 7.88 KB 257s ~ linear (in seq length) expected anchor cost of 108.09 KB 257s Initial hash table uses: 256 bytes (4 bits, 16 entries) 257s Expected memory usage (without anchors): 8.12 KB 257s Expected memory usage (with anchors): 116.22 KB 257s Hash parameters computed in 0.149 seconds 257s Creating storage structures: 16 entries in 256 bytes space. 257s Storage structures created in: 0.000 seconds 257s 257s Hashing NZ_GG705094.fna forwards 257s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%........ 257s Hashing NZ_GG705094.fna backwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%........ 257s Hashing NZ_GG705094.gbk forwards 257s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%........ 257s Hashing NZ_GG705094.gbk backwards 257s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 90%........ 257s Initial hashing took: 0.004 seconds 257s Extracting anchors from hash-space. 257s (T -0.004 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:45 2024 257s 93%. 257s Anchor extraction completed in: 0.003 seconds 257s Total anchors: 0 257s Anchor extraction + merge time: 0.003 seconds 257s Total processing time: 0.157 seconds 257s Writing anchors... 257s Total seeds used in anchors: 16 257s Hash performance: 257s Keys used: 16 out of 16 possible (100.00%). 257s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 257s Average pigeons per pigeon hole: 1 257s Writing 16 repeats...Output writing finished in: 0.001 seconds 257s Total time: 0.158 seconds 257s Murasaki finished! 257s PASSED MURASAKI 257s 257s Testing Genepare on NZ_GG705094.fna 257s 154 257s PASSED GENEPARSE 257s 257s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 257s Testing mbfa on NZ_GG705094.fna 257s PASSED mbfa 257s 257s Test Murasaki on NZ_GG705095.fna 257s Verbosity level is: 0 257s Writing to: output/test 257s Pattern is: 101 257s Max usable hash bits: 27 257s Hit filter is: 0 257s Hash table type is: EcoHash 257s Hashing every: 1 base 257s Histogram detail is: 0 257s Hashing function is: 3 257s Collision profiling is: disabled 257s Repeats are: unmasked 257s Mergefilter is at: 100 257s Random seed: 1710556545 (automatic) 257s Bitscore output: on 257s Leave status records: no 257s Join neighbors is: off 257s Target memory is: 1.24 GB 257s Retain members is: true 257s Store repeatmap? yes 257s Reverse complement data is generated on the fly 257s Rifts allowed: 0 257s Fuzzy Extension: yes 257s Score by minimum pair: yes 257s Gapped anchors: no 257s Large sequence support is: enabled => seqpos is 8 bytes 257s Murasaki version 1.68.6 (LARGESEQ) 257s Loading NZ_GG705095.fna 257s Read 1093bp (1.07 KBp) in 0.000 seconds (3.5 MBp/s) 257s Done with forward strand (1093bp). Preparing reverse complement... 257s <-> Reversing metdata. 257s Done. 257s Seq NZ_GG705095.fna loaded. 1.07 KB 257s Loading NZ_GG705095.gbk 257s Read 1093bp (1.07 KBp) in 0.000 seconds (3.2 MBp/s) 257s Done with forward strand (1093bp). Preparing reverse complement... 257s <-> Reversing metdata. 257s Done. 257s Seq NZ_GG705095.gbk loaded. 1.07 KB 257s Sequence loading took: 0.001 seconds 257s Forward frequencies: A:33.1199% C:16.8344% G:21.043% T:29.0027% 257s Global base frequencies: A/T:62.1226% C/G:37.8774% 257s Pat: 3 bases long with weight 2 257s 1 101 257s Computing hash parameters... 257s Using 4 hashbits 257s 0%......... (T -0.138 seconds) ETA: Sat Mar 16 02:35:46 2024 257s 10%......... (T -0.119 seconds) ETA: Sat Mar 16 02:35:46 2024 257s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:46 2024 257s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:46 2024 257s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:46 2024 257s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 91%........ 258s Acceptable hash function found after 1000 cycles. 258s Best uses 2/2 bases and has 0 empties from 2 inputs. 258s Score: 0.96875 (cf. worst: -4.51562) 258s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 258s Total correlation penalty: 0 258s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 258s 10 258s == 258s w[ 0]>>29: -.C 258s w[ 0]>>30: A.- 258s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 258s Ecolist (optimistic): Expcted entries per list: 9 258s Ecolist (optimistic): Minimum chunks per list: 4 258s Would take minimum 256.000000 bytes to make perfect hash. 258s Hashing 4.27 KB of sequence requires: 258s ~ linear (in seq length) hashing cost of 7.46 KB 258s ~ linear (in seq length) expected anchor cost of 102.47 KB 258s Initial hash table uses: 256 bytes (4 bits, 16 entries) 258s Expected memory usage (without anchors): 7.71 KB 258s Expected memory usage (with anchors): 110.18 KB 258s Hash parameters computed in 0.149 seconds 258s Creating storage structures: 16 entries in 256 bytes space. 258s Storage structures created in: 0.000 seconds 258s 258s Hashing NZ_GG705095.fna forwards 258s 0%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Hashing NZ_GG705095.fna backwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Hashing NZ_GG705095.gbk forwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Hashing NZ_GG705095.gbk backwards 258s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Initial hashing took: 0.006 seconds 258s Extracting anchors from hash-space. 258s (T -0.004 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 93%. 258s Anchor extraction completed in: 0.002 seconds 258s Total anchors: 0 258s Anchor extraction + merge time: 0.002 seconds 258s Total processing time: 0.159 seconds 258s Writing anchors... 258s Total seeds used in anchors: 16 258s Hash performance: 258s Keys used: 16 out of 16 possible (100.00%). 258s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 258s Average pigeons per pigeon hole: 1 258s Writing 16 repeats...Output writing finished in: 0.001 seconds 258s Total time: 0.160 seconds 258s Murasaki finished! 258s PASSED MURASAKI 258s 258s Testing Genepare on NZ_GG705095.fna 258s 94 258s PASSED GENEPARSE 258s 258s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 258s Testing mbfa on NZ_GG705095.fna 258s PASSED mbfa 258s 258s Test Murasaki on NZ_GG705096.fna 258s Verbosity level is: 0 258s Writing to: output/test 258s Pattern is: 101 258s Max usable hash bits: 27 258s Hit filter is: 0 258s Hash table type is: EcoHash 258s Hashing every: 1 base 258s Histogram detail is: 0 258s Hashing function is: 3 258s Collision profiling is: disabled 258s Repeats are: unmasked 258s Mergefilter is at: 100 258s Random seed: 1710556546 (automatic) 258s Bitscore output: on 258s Leave status records: no 258s Join neighbors is: off 258s Target memory is: 1.24 GB 258s Retain members is: true 258s Store repeatmap? yes 258s Reverse complement data is generated on the fly 258s Rifts allowed: 0 258s Fuzzy Extension: yes 258s Score by minimum pair: yes 258s Gapped anchors: no 258s Large sequence support is: enabled => seqpos is 8 bytes 258s Murasaki version 1.68.6 (LARGESEQ) 258s Loading NZ_GG705096.fna 258s Read 1046bp (1.02 KBp) in 0.000 seconds (2.5 MBp/s) 258s Done with forward strand (1046bp). Preparing reverse complement... 258s <-> Reversing metdata. 258s Done. 258s Seq NZ_GG705096.fna loaded. 1.02 KB 258s Loading NZ_GG705096.gbk 258s Read 1046bp (1.02 KBp) in 0.000 seconds (2.7 MBp/s) 258s Done with forward strand (1046bp). Preparing reverse complement... 258s <-> Reversing metdata. 258s Done. 258s Seq NZ_GG705096.gbk loaded. 1.02 KB 258s Sequence loading took: 0.001 seconds 258s Forward frequencies: A:30.8795% C:24.4742% G:20.9369% T:23.7094% 258s Global base frequencies: A/T:54.5889% C/G:45.4111% 258s Pat: 3 bases long with weight 2 258s 1 101 258s Computing hash parameters... 258s Using 4 hashbits 258s 0%......... (T -0.145 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.123 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 91%........ 258s Acceptable hash function found after 1000 cycles. 258s Best uses 2/2 bases and has 0 empties from 2 inputs. 258s Score: 0.96875 (cf. worst: -4.51562) 258s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 258s Total correlation penalty: 0 258s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 258s 10 258s == 258s w[ 0]>>29: -.C 258s w[ 0]>>30: A.- 258s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1) 258s Ecolist (optimistic): Expcted entries per list: 9 258s Ecolist (optimistic): Minimum chunks per list: 4 258s Would take minimum 256.000000 bytes to make perfect hash. 258s Hashing 4.09 KB of sequence requires: 258s ~ linear (in seq length) hashing cost of 7.15 KB 258s ~ linear (in seq length) expected anchor cost of 98.06 KB 258s Initial hash table uses: 256 bytes (4 bits, 16 entries) 258s Expected memory usage (without anchors): 7.40 KB 258s Expected memory usage (with anchors): 105.46 KB 258s Hash parameters computed in 0.150 seconds 258s Creating storage structures: 16 entries in 256 bytes space. 258s Storage structures created in: 0.000 seconds 258s 258s Hashing NZ_GG705096.fna forwards 258s 0%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%........ 258s Hashing NZ_GG705096.fna backwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%........ 258s Hashing NZ_GG705096.gbk forwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%........ 258s Hashing NZ_GG705096.gbk backwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%........ 258s Initial hashing took: 0.004 seconds 258s Extracting anchors from hash-space. 258s (T -0.003 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 6%. (T -0.003 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 31%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 93%. 258s Anchor extraction completed in: 0.002 seconds 258s Total anchors: 0 258s Anchor extraction + merge time: 0.002 seconds 258s Total processing time: 0.157 seconds 258s Writing anchors... 258s Total seeds used in anchors: 16 258s Hash performance: 258s Keys used: 16 out of 16 possible (100.00%). 258s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 258s Average pigeons per pigeon hole: 1 258s Writing 16 repeats...Output writing finished in: 0.001 seconds 258s Total time: 0.158 seconds 258s Murasaki finished! 258s PASSED MURASAKI 258s 258s Testing Genepare on NZ_GG705096.fna 258s 47 258s PASSED GENEPARSE 258s 258s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 258s Testing mbfa on NZ_GG705096.fna 258s PASSED mbfa 258s 258s Test Murasaki on NZ_GG705097.fna 258s Verbosity level is: 0 258s Writing to: output/test 258s Pattern is: 101 258s Max usable hash bits: 27 258s Hit filter is: 0 258s Hash table type is: EcoHash 258s Hashing every: 1 base 258s Histogram detail is: 0 258s Hashing function is: 3 258s Collision profiling is: disabled 258s Repeats are: unmasked 258s Mergefilter is at: 100 258s Random seed: 1710556546 (automatic) 258s Bitscore output: on 258s Leave status records: no 258s Join neighbors is: off 258s Target memory is: 1.24 GB 258s Retain members is: true 258s Store repeatmap? yes 258s Reverse complement data is generated on the fly 258s Rifts allowed: 0 258s Fuzzy Extension: yes 258s Score by minimum pair: yes 258s Gapped anchors: no 258s Large sequence support is: enabled => seqpos is 8 bytes 258s Murasaki version 1.68.6 (LARGESEQ) 258s Loading NZ_GG705097.fna 258s Read 976bp (976 bytesp) in 0.000 seconds (3.2 MBp/s) 258s Done with forward strand (976bp). Preparing reverse complement... 258s <-> Reversing metdata. 258s Done. 258s Seq NZ_GG705097.fna loaded. 976 bytes 258s Loading NZ_GG705097.gbk 258s Read 976bp (976 bytesp) in 0.000 seconds (2.9 MBp/s) 258s Done with forward strand (976bp). Preparing reverse complement... 258s <-> Reversing metdata. 258s Done. 258s Seq NZ_GG705097.gbk loaded. 976 bytes 258s Sequence loading took: 0.001 seconds 258s Forward frequencies: A:33.5041% C:17.5205% G:17.8279% T:31.1475% 258s Global base frequencies: A/T:64.6516% C/G:35.3484% 258s Pat: 3 bases long with weight 2 258s 1 101 258s Computing hash parameters... 258s Using 4 hashbits 258s 0%......... (T -0.138 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.121 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 91%........ 258s Acceptable hash function found after 1000 cycles. 258s Best uses 2/2 bases and has 0 empties from 2 inputs. 258s Score: 0.96875 (cf. worst: -4.51562) 258s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 258s Total correlation penalty: 0 258s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 258s 10 258s == 258s w[ 0]>>29: -.C 258s w[ 0]>>30: A.- 258s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 258s Ecolist (optimistic): Expcted entries per list: 8 258s Ecolist (optimistic): Minimum chunks per list: 4 258s Would take minimum 256.000000 bytes to make perfect hash. 258s Hashing 3.81 KB of sequence requires: 258s ~ linear (in seq length) hashing cost of 6.20 KB 258s ~ linear (in seq length) expected anchor cost of 91.50 KB 258s Initial hash table uses: 256 bytes (4 bits, 16 entries) 258s Expected memory usage (without anchors): 6.45 KB 258s Expected memory usage (with anchors): 97.95 KB 258s Hash parameters computed in 0.149 seconds 258s Creating storage structures: 16 entries in 256 bytes space. 258s Storage structures created in: 0.000 seconds 258s 258s Hashing NZ_GG705097.fna forwards 258s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Hashing NZ_GG705097.fna backwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Hashing NZ_GG705097.gbk forwards 258s 0%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Hashing NZ_GG705097.gbk backwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Initial hashing took: 0.004 seconds 258s Extracting anchors from hash-space. 258s (T -0.004 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 31%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 68%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 93%. 258s Anchor extraction completed in: 0.003 seconds 258s Total anchors: 0 258s Anchor extraction + merge time: 0.003 seconds 258s Total processing time: 0.158 seconds 258s Writing anchors... 258s Total seeds used in anchors: 16 258s Hash performance: 258s Keys used: 16 out of 16 possible (100.00%). 258s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 258s Average pigeons per pigeon hole: 1 258s Writing 16 repeats...Output writing finished in: 0.001 seconds 258s Total time: 0.159 seconds 258s Murasaki finished! 258s PASSED MURASAKI 258s 258s Testing Genepare on NZ_GG705097.fna 258s 18446744073709551593 258s PASSED GENEPARSE 258s 258s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 258s Testing mbfa on NZ_GG705097.fna 258s PASSED mbfa 258s 258s Test Murasaki on NZ_GG705098.fna 258s Verbosity level is: 0 258s Writing to: output/test 258s Pattern is: 101 258s Max usable hash bits: 27 258s Hit filter is: 0 258s Hash table type is: EcoHash 258s Hashing every: 1 base 258s Histogram detail is: 0 258s Hashing function is: 3 258s Collision profiling is: disabled 258s Repeats are: unmasked 258s Mergefilter is at: 100 258s Random seed: 1710556546 (automatic) 258s Bitscore output: on 258s Leave status records: no 258s Join neighbors is: off 258s Target memory is: 1.24 GB 258s Retain members is: true 258s Store repeatmap? yes 258s Reverse complement data is generated on the fly 258s Rifts allowed: 0 258s Fuzzy Extension: yes 258s Score by minimum pair: yes 258s Gapped anchors: no 258s Large sequence support is: enabled => seqpos is 8 bytes 258s Murasaki version 1.68.6 (LARGESEQ) 258s Loading NZ_GG705098.fna 258s Read 959bp (959 bytesp) in 0.000 seconds (2.2 MBp/s) 258s Done with forward strand (959bp). Preparing reverse complement... 258s <-> Reversing metdata. 258s Done. 258s Seq NZ_GG705098.fna loaded. 959 bytes 258s Loading NZ_GG705098.gbk 258s Read 959bp (959 bytesp) in 0.000 seconds (2.2 MBp/s) 258s Done with forward strand (959bp). Preparing reverse complement... 258s <-> Reversing metdata. 258s Done. 258s Seq NZ_GG705098.gbk loaded. 959 bytes 258s Sequence loading took: 0.002 seconds 258s Forward frequencies: A:33.0553% C:20.6465% G:17.414% T:28.8843% 258s Global base frequencies: A/T:61.9395% C/G:38.0605% 258s Pat: 3 bases long with weight 2 258s 1 101 258s Computing hash parameters... 258s Using 4 hashbits 258s 0%......... (T -0.152 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.132 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.110 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.093 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.078 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.062 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.048 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.032 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 91%........ 258s Acceptable hash function found after 1000 cycles. 258s Best uses 2/2 bases and has 0 empties from 2 inputs. 258s Score: 0.96875 (cf. worst: -4.51562) 258s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 258s Total correlation penalty: 0 258s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 258s 10 258s == 258s w[ 0]>>29: -.C 258s w[ 0]>>30: A.- 258s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 258s Ecolist (optimistic): Expcted entries per list: 8 258s Ecolist (optimistic): Minimum chunks per list: 4 258s Would take minimum 256.000000 bytes to make perfect hash. 258s Hashing 3.75 KB of sequence requires: 258s ~ linear (in seq length) hashing cost of 6.08 KB 258s ~ linear (in seq length) expected anchor cost of 89.91 KB 258s Initial hash table uses: 256 bytes (4 bits, 16 entries) 258s Expected memory usage (without anchors): 6.33 KB 258s Expected memory usage (with anchors): 96.24 KB 258s Hash parameters computed in 0.156 seconds 258s Creating storage structures: 16 entries in 256 bytes space. 258s Storage structures created in: 0.000 seconds 258s 258s Hashing NZ_GG705098.fna forwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Hashing NZ_GG705098.fna backwards 258s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Hashing NZ_GG705098.gbk forwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Hashing NZ_GG705098.gbk backwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%......... 258s Initial hashing took: 0.003 seconds 258s Extracting anchors from hash-space. 258s (T -0.004 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 31%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 68%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 93%. 258s Anchor extraction completed in: 0.003 seconds 258s Total anchors: 0 258s Anchor extraction + merge time: 0.003 seconds 258s Total processing time: 0.164 seconds 258s Writing anchors... 258s Total seeds used in anchors: 16 258s Hash performance: 258s Keys used: 16 out of 16 possible (100.00%). 258s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 258s Average pigeons per pigeon hole: 1 258s Writing 16 repeats...Output writing finished in: 0.001 seconds 258s Total time: 0.164 seconds 258s Murasaki finished! 258s PASSED MURASAKI 258s 258s Testing Genepare on NZ_GG705098.fna 258s 18446744073709551576 258s PASSED GENEPARSE 258s 258s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 258s Testing mbfa on NZ_GG705098.fna 258s PASSED mbfa 258s 258s Test Murasaki on NZ_GG705099.fna 258s Verbosity level is: 0 258s Writing to: output/test 258s Pattern is: 101 258s Max usable hash bits: 27 258s Hit filter is: 0 258s Hash table type is: EcoHash 258s Hashing every: 1 base 258s Histogram detail is: 0 258s Hashing function is: 3 258s Collision profiling is: disabled 258s Repeats are: unmasked 258s Mergefilter is at: 100 258s Random seed: 1710556546 (automatic) 258s Bitscore output: on 258s Leave status records: no 258s Join neighbors is: off 258s Target memory is: 1.24 GB 258s Retain members is: true 258s Store repeatmap? yes 258s Reverse complement data is generated on the fly 258s Rifts allowed: 0 258s Fuzzy Extension: yes 258s Score by minimum pair: yes 258s Gapped anchors: no 258s Large sequence support is: enabled => seqpos is 8 bytes 258s Murasaki version 1.68.6 (LARGESEQ) 258s Loading NZ_GG705099.fna 258s Read 927bp (927 bytesp) in 0.000 seconds (2.3 MBp/s) 258s Done with forward strand (927bp). Preparing reverse complement... 258s <-> Reversing metdata. 258s Done. 258s Seq NZ_GG705099.fna loaded. 927 bytes 258s Loading NZ_GG705099.gbk 258s Read 927bp (927 bytesp) in 0.000 seconds (2.2 MBp/s) 258s Done with forward strand (927bp). Preparing reverse complement... 258s <-> Reversing metdata. 258s Done. 258s Seq NZ_GG705099.gbk loaded. 927 bytes 258s Sequence loading took: 0.001 seconds 258s Forward frequencies: A:32.2546% C:16.5049% G:12.6214% T:38.6192% 258s Global base frequencies: A/T:70.8738% C/G:29.1262% 258s Pat: 3 bases long with weight 2 258s 1 101 258s Computing hash parameters... 258s Using 4 hashbits 258s 0%......... (T -0.139 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.133 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.111 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.093 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.077 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.062 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.047 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.031 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 91%........ 258s Acceptable hash function found after 1000 cycles. 258s Best uses 2/2 bases and has 0 empties from 2 inputs. 258s Score: 0.96875 (cf. worst: -4.51562) 258s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 258s Total correlation penalty: 0 258s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 258s 10 258s == 258s w[ 0]>>29: -.C 258s w[ 0]>>30: A.- 258s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 258s Ecolist (optimistic): Expcted entries per list: 8 258s Ecolist (optimistic): Minimum chunks per list: 4 258s Would take minimum 256.000000 bytes to make perfect hash. 258s Hashing 3.62 KB of sequence requires: 258s ~ linear (in seq length) hashing cost of 5.88 KB 258s ~ linear (in seq length) expected anchor cost of 86.91 KB 258s Initial hash table uses: 256 bytes (4 bits, 16 entries) 258s Expected memory usage (without anchors): 6.13 KB 258s Expected memory usage (with anchors): 93.03 KB 258s Hash parameters computed in 0.156 seconds 258s Creating storage structures: 16 entries in 256 bytes space. 258s Storage structures created in: 0.000 seconds 258s 258s Hashing NZ_GG705099.fna forwards 258s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%........ 258s Hashing NZ_GG705099.fna backwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%........ 258s Hashing NZ_GG705099.gbk forwards 258s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%........ 258s Hashing NZ_GG705099.gbk backwards 258s 0%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 90%........ 258s Initial hashing took: 0.003 seconds 258s Extracting anchors from hash-space. 258s (T -0.004 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 31%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 68%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:46 2024 258s 93%. 258s Anchor extraction completed in: 0.003 seconds 258s Total anchors: 0 258s Anchor extraction + merge time: 0.003 seconds 258s Total processing time: 0.164 seconds 258s Writing anchors... 258s Total seeds used in anchors: 16 258s Hash performance: 258s Keys used: 16 out of 16 possible (100.00%). 258s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 258s Average pigeons per pigeon hole: 1 258s Writing 16 repeats...Output writing finished in: 0.001 seconds 258s Total time: 0.165 seconds 258s Murasaki finished! 258s PASSED MURASAKI 258s 258s Testing Genepare on NZ_GG705099.fna 258s 18446744073709551544 258s PASSED GENEPARSE 258s 258s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 258s Testing mbfa on NZ_GG705099.fna 258s PASSED mbfa 258s 258s Test Murasaki on NZ_GG705100.fna 258s Verbosity level is: 0 258s Writing to: output/test 258s Pattern is: 101 258s Max usable hash bits: 27 258s Hit filter is: 0 258s Hash table type is: EcoHash 258s Hashing every: 1 base 258s Histogram detail is: 0 258s Hashing function is: 3 258s Collision profiling is: disabled 258s Repeats are: unmasked 258s Mergefilter is at: 100 258s Random seed: 1710556546 (automatic) 258s Bitscore output: on 258s Leave status records: no 258s Join neighbors is: off 258s Target memory is: 1.24 GB 258s Retain members is: true 258s Store repeatmap? yes 258s Reverse complement data is generated on the fly 258s Rifts allowed: 0 258s Fuzzy Extension: yes 258s Score by minimum pair: yes 258s Gapped anchors: no 258s Large sequence support is: enabled => seqpos is 8 bytes 258s Murasaki version 1.68.6 (LARGESEQ) 258s Loading NZ_GG705100.fna 258s Read 885bp (885 bytesp) in 0.000 seconds (3.0 MBp/s) 258s Done with forward strand (885bp). Preparing reverse complement... 258s <-> Reversing metdata. 258s Done. 258s Seq NZ_GG705100.fna loaded. 885 bytes 258s Loading NZ_GG705100.gbk 258s Read 885bp (885 bytesp) in 0.000 seconds (3.2 MBp/s) 258s Done with forward strand (885bp). Preparing reverse complement... 258s <-> Reversing metdata. 258s Done. 258s Seq NZ_GG705100.gbk loaded. 885 bytes 258s Sequence loading took: 0.001 seconds 258s Forward frequencies: A:26.6667% C:18.9831% G:15.5932% T:38.7571% 258s Global base frequencies: A/T:65.4237% C/G:34.5763% 258s Pat: 3 bases long with weight 2 258s 1 101 258s Computing hash parameters... 258s Using 4 hashbits 258s 0%......... (T -0.150 seconds) ETA: Sat Mar 16 02:35:47 2024 258s 10%......... (T -0.131 seconds) ETA: Sat Mar 16 02:35:47 2024 258s 20%......... (T -0.110 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.093 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.078 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.062 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.047 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.031 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 91%........ 259s Acceptable hash function found after 1000 cycles. 259s Best uses 2/2 bases and has 0 empties from 2 inputs. 259s Score: 0.96875 (cf. worst: -4.51562) 259s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 259s Total correlation penalty: 0 259s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 259s 10 259s == 259s w[ 0]>>29: -.C 259s w[ 0]>>30: A.- 259s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 259s Ecolist (optimistic): Expcted entries per list: 8 259s Ecolist (optimistic): Minimum chunks per list: 4 259s Would take minimum 256.000000 bytes to make perfect hash. 259s Hashing 3.46 KB of sequence requires: 259s ~ linear (in seq length) hashing cost of 5.61 KB 259s ~ linear (in seq length) expected anchor cost of 82.97 KB 259s Initial hash table uses: 256 bytes (4 bits, 16 entries) 259s Expected memory usage (without anchors): 5.86 KB 259s Expected memory usage (with anchors): 88.83 KB 259s Hash parameters computed in 0.156 seconds 259s Creating storage structures: 16 entries in 256 bytes space. 259s Storage structures created in: 0.000 seconds 259s 259s Hashing NZ_GG705100.fna forwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Hashing NZ_GG705100.fna backwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Hashing NZ_GG705100.gbk forwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Hashing NZ_GG705100.gbk backwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Initial hashing took: 0.004 seconds 259s Extracting anchors from hash-space. 259s (T -0.003 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 31%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 68%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 93%. 259s Anchor extraction completed in: 0.003 seconds 259s Total anchors: 0 259s Anchor extraction + merge time: 0.003 seconds 259s Total processing time: 0.164 seconds 259s Writing anchors... 259s Total seeds used in anchors: 16 259s Hash performance: 259s Keys used: 16 out of 16 possible (100.00%). 259s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 259s Average pigeons per pigeon hole: 1 259s Writing 16 repeats...Output writing finished in: 0.002 seconds 259s Total time: 0.166 seconds 259s Murasaki finished! 259s PASSED MURASAKI 259s 259s Testing Genepare on NZ_GG705100.fna 259s 18446744073709551502 259s PASSED GENEPARSE 259s 259s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 259s Testing mbfa on NZ_GG705100.fna 259s PASSED mbfa 259s 259s Test Murasaki on NZ_GG705101.fna 259s Verbosity level is: 0 259s Writing to: output/test 259s Pattern is: 101 259s Max usable hash bits: 27 259s Hit filter is: 0 259s Hash table type is: EcoHash 259s Hashing every: 1 base 259s Histogram detail is: 0 259s Hashing function is: 3 259s Collision profiling is: disabled 259s Repeats are: unmasked 259s Mergefilter is at: 100 259s Random seed: 1710556547 (automatic) 259s Bitscore output: on 259s Leave status records: no 259s Join neighbors is: off 259s Target memory is: 1.24 GB 259s Retain members is: true 259s Store repeatmap? yes 259s Reverse complement data is generated on the fly 259s Rifts allowed: 0 259s Fuzzy Extension: yes 259s Score by minimum pair: yes 259s Gapped anchors: no 259s Large sequence support is: enabled => seqpos is 8 bytes 259s Murasaki version 1.68.6 (LARGESEQ) 259s Loading NZ_GG705101.fna 259s Read 832bp (832 bytesp) in 0.001 seconds (1.3 MBp/s) 259s Done with forward strand (832bp). Preparing reverse complement... 259s <-> Reversing metdata. 259s Done. 259s Seq NZ_GG705101.fna loaded. 832 bytes 259s Loading NZ_GG705101.gbk 259s Read 832bp (832 bytesp) in 0.000 seconds (2.0 MBp/s) 259s Done with forward strand (832bp). Preparing reverse complement... 259s <-> Reversing metdata. 259s Done. 259s Seq NZ_GG705101.gbk loaded. 832 bytes 259s Sequence loading took: 0.002 seconds 259s Forward frequencies: A:33.6538% C:15.9856% G:18.149% T:32.2115% 259s Global base frequencies: A/T:65.8654% C/G:34.1346% 259s Pat: 3 bases long with weight 2 259s 1 101 259s Computing hash parameters... 259s Using 4 hashbits 259s 0%......... (T -0.151 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.129 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.109 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.093 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.078 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.064 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.047 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.031 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 91%........ 259s Acceptable hash function found after 1000 cycles. 259s Best uses 2/2 bases and has 0 empties from 2 inputs. 259s Score: 0.96875 (cf. worst: -4.51562) 259s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 259s Total correlation penalty: 0 259s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 259s 10 259s == 259s w[ 0]>>29: -.C 259s w[ 0]>>30: A.- 259s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 259s Ecolist (optimistic): Expcted entries per list: 8 259s Ecolist (optimistic): Minimum chunks per list: 4 259s Would take minimum 256.000000 bytes to make perfect hash. 259s Hashing 3.25 KB of sequence requires: 259s ~ linear (in seq length) hashing cost of 5.28 KB 259s ~ linear (in seq length) expected anchor cost of 78.00 KB 259s Initial hash table uses: 256 bytes (4 bits, 16 entries) 259s Expected memory usage (without anchors): 5.53 KB 259s Expected memory usage (with anchors): 83.53 KB 259s Hash parameters computed in 0.158 seconds 259s Creating storage structures: 16 entries in 256 bytes space. 259s Storage structures created in: 0.001 seconds 259s 259s Hashing NZ_GG705101.fna forwards 259s 0%......... (T -0.009 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 91%........ 259s Hashing NZ_GG705101.fna backwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 91%........ 259s Hashing NZ_GG705101.gbk forwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 91%........ 259s Hashing NZ_GG705101.gbk backwards 259s 0%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 91%........ 259s Initial hashing took: 0.005 seconds 259s Extracting anchors from hash-space. 259s (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 93%. 259s Anchor extraction completed in: 0.001 seconds 259s Total anchors: 0 259s Anchor extraction + merge time: 0.001 seconds 259s Total processing time: 0.167 seconds 259s Writing anchors... 259s Total seeds used in anchors: 16 259s Hash performance: 259s Keys used: 16 out of 16 possible (100.00%). 259s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 259s Average pigeons per pigeon hole: 1 259s Writing 16 repeats...Output writing finished in: 0.001 seconds 259s Total time: 0.168 seconds 259s Murasaki finished! 259s PASSED MURASAKI 259s 259s Testing Genepare on NZ_GG705101.fna 259s 18446744073709551449 259s PASSED GENEPARSE 259s 259s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 259s Testing mbfa on NZ_GG705101.fna 259s PASSED mbfa 259s 259s Test Murasaki on NZ_GG705102.fna 259s Verbosity level is: 0 259s Writing to: output/test 259s Pattern is: 101 259s Max usable hash bits: 27 259s Hit filter is: 0 259s Hash table type is: EcoHash 259s Hashing every: 1 base 259s Histogram detail is: 0 259s Hashing function is: 3 259s Collision profiling is: disabled 259s Repeats are: unmasked 259s Mergefilter is at: 100 259s Random seed: 1710556547 (automatic) 259s Bitscore output: on 259s Leave status records: no 259s Join neighbors is: off 259s Target memory is: 1.24 GB 259s Retain members is: true 259s Store repeatmap? yes 259s Reverse complement data is generated on the fly 259s Rifts allowed: 0 259s Fuzzy Extension: yes 259s Score by minimum pair: yes 259s Gapped anchors: no 259s Large sequence support is: enabled => seqpos is 8 bytes 259s Murasaki version 1.68.6 (LARGESEQ) 259s Loading NZ_GG705102.fna 259s Read 828bp (828 bytesp) in 0.000 seconds (2.1 MBp/s) 259s Done with forward strand (828bp). Preparing reverse complement... 259s <-> Reversing metdata. 259s Done. 259s Seq NZ_GG705102.fna loaded. 828 bytes 259s Loading NZ_GG705102.gbk 259s Read 828bp (828 bytesp) in 0.000 seconds (2.8 MBp/s) 259s Done with forward strand (828bp). Preparing reverse complement... 259s <-> Reversing metdata. 259s Done. 259s Seq NZ_GG705102.gbk loaded. 828 bytes 259s Sequence loading took: 0.001 seconds 259s Forward frequencies: A:29.8309% C:22.4638% G:25% T:22.7053% 259s Global base frequencies: A/T:52.5362% C/G:47.4638% 259s Pat: 3 bases long with weight 2 259s 1 101 259s Computing hash parameters... 259s Using 4 hashbits 259s 0%......... (T -0.155 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.127 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.111 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.096 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.082 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.065 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.049 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.033 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 91%........ 259s Acceptable hash function found after 1000 cycles. 259s Best uses 2/2 bases and has 0 empties from 2 inputs. 259s Score: 0.96875 (cf. worst: -4.51562) 259s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 259s Total correlation penalty: 0 259s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 259s 10 259s == 259s w[ 0]>>29: -.C 259s w[ 0]>>30: A.- 259s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 259s Ecolist (optimistic): Expcted entries per list: 8 259s Ecolist (optimistic): Minimum chunks per list: 4 259s Would take minimum 256.000000 bytes to make perfect hash. 259s Hashing 3.23 KB of sequence requires: 259s ~ linear (in seq length) hashing cost of 5.26 KB 259s ~ linear (in seq length) expected anchor cost of 77.62 KB 259s Initial hash table uses: 256 bytes (4 bits, 16 entries) 259s Expected memory usage (without anchors): 5.51 KB 259s Expected memory usage (with anchors): 83.13 KB 259s Hash parameters computed in 0.163 seconds 259s Creating storage structures: 16 entries in 256 bytes space. 259s Storage structures created in: 0.000 seconds 259s 259s Hashing NZ_GG705102.fna forwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Hashing NZ_GG705102.fna backwards 259s 0%......... (T -0.008 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Hashing NZ_GG705102.gbk forwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Hashing NZ_GG705102.gbk backwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Initial hashing took: 0.004 seconds 259s Extracting anchors from hash-space. 259s (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 93%. 259s Anchor extraction completed in: 0.002 seconds 259s Total anchors: 0 259s Anchor extraction + merge time: 0.003 seconds 259s Total processing time: 0.171 seconds 259s Writing anchors... 259s Total seeds used in anchors: 16 259s Hash performance: 259s Keys used: 16 out of 16 possible (100.00%). 259s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 259s Average pigeons per pigeon hole: 1 259s Writing 16 repeats...Output writing finished in: 0.001 seconds 259s Total time: 0.172 seconds 259s Murasaki finished! 259s PASSED MURASAKI 259s 259s Testing Genepare on NZ_GG705102.fna 259s 18446744073709551445 259s PASSED GENEPARSE 259s 259s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 259s Testing mbfa on NZ_GG705102.fna 259s PASSED mbfa 259s 259s Test Murasaki on NZ_GG705103.fna 259s Verbosity level is: 0 259s Writing to: output/test 259s Pattern is: 101 259s Max usable hash bits: 27 259s Hit filter is: 0 259s Hash table type is: EcoHash 259s Hashing every: 1 base 259s Histogram detail is: 0 259s Hashing function is: 3 259s Collision profiling is: disabled 259s Repeats are: unmasked 259s Mergefilter is at: 100 259s Random seed: 1710556547 (automatic) 259s Bitscore output: on 259s Leave status records: no 259s Join neighbors is: off 259s Target memory is: 1.24 GB 259s Retain members is: true 259s Store repeatmap? yes 259s Reverse complement data is generated on the fly 259s Rifts allowed: 0 259s Fuzzy Extension: yes 259s Score by minimum pair: yes 259s Gapped anchors: no 259s Large sequence support is: enabled => seqpos is 8 bytes 259s Murasaki version 1.68.6 (LARGESEQ) 259s Loading NZ_GG705103.fna 259s Read 828bp (828 bytesp) in 0.000 seconds (1.9 MBp/s) 259s Done with forward strand (828bp). Preparing reverse complement... 259s <-> Reversing metdata. 259s Done. 259s Seq NZ_GG705103.fna loaded. 828 bytes 259s Loading NZ_GG705103.gbk 259s Read 828bp (828 bytesp) in 0.000 seconds (2.6 MBp/s) 259s Done with forward strand (828bp). Preparing reverse complement... 259s <-> Reversing metdata. 259s Done. 259s Seq NZ_GG705103.gbk loaded. 828 bytes 259s Sequence loading took: 0.001 seconds 259s Forward frequencies: A:31.1594% C:20.6522% G:22.2222% T:25.9662% 259s Global base frequencies: A/T:57.1256% C/G:42.8744% 259s Pat: 3 bases long with weight 2 259s 1 101 259s Computing hash parameters... 259s Using 4 hashbits 259s 0%......... (T -0.144 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.144 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.124 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.101 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.082 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.066 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.051 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.034 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 91%........ 259s Acceptable hash function found after 1000 cycles. 259s Best uses 2/2 bases and has 0 empties from 2 inputs. 259s Score: 0.96875 (cf. worst: -4.51562) 259s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 259s Total correlation penalty: 0 259s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 259s 10 259s == 259s w[ 0]>>29: -.C 259s w[ 0]>>30: A.- 259s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 259s Ecolist (optimistic): Expcted entries per list: 8 259s Ecolist (optimistic): Minimum chunks per list: 4 259s Would take minimum 256.000000 bytes to make perfect hash. 259s Hashing 3.23 KB of sequence requires: 259s ~ linear (in seq length) hashing cost of 5.26 KB 259s ~ linear (in seq length) expected anchor cost of 77.62 KB 259s Initial hash table uses: 256 bytes (4 bits, 16 entries) 259s Expected memory usage (without anchors): 5.51 KB 259s Expected memory usage (with anchors): 83.13 KB 259s Hash parameters computed in 0.165 seconds 259s Creating storage structures: 16 entries in 256 bytes space. 259s Storage structures created in: 0.000 seconds 259s 259s Hashing NZ_GG705103.fna forwards 259s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Hashing NZ_GG705103.fna backwards 259s 0%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Hashing NZ_GG705103.gbk forwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Hashing NZ_GG705103.gbk backwards 259s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 90%........ 259s Initial hashing took: 0.003 seconds 259s Extracting anchors from hash-space. 259s (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 93%. 259s Anchor extraction completed in: 0.002 seconds 259s Total anchors: 0 259s Anchor extraction + merge time: 0.002 seconds 259s Total processing time: 0.171 seconds 259s Writing anchors... 259s Total seeds used in anchors: 16 259s Hash performance: 259s Keys used: 16 out of 16 possible (100.00%). 259s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 259s Average pigeons per pigeon hole: 1 259s Writing 16 repeats...Output writing finished in: 0.002 seconds 259s Total time: 0.173 seconds 259s Murasaki finished! 259s PASSED MURASAKI 259s 259s Testing Genepare on NZ_GG705103.fna 259s 18446744073709551445 259s PASSED GENEPARSE 259s 259s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 259s Testing mbfa on NZ_GG705103.fna 259s PASSED mbfa 259s 259s Test Murasaki on NZ_GG705104.fna 259s Verbosity level is: 0 259s Writing to: output/test 259s Pattern is: 101 259s Max usable hash bits: 27 259s Hit filter is: 0 259s Hash table type is: EcoHash 259s Hashing every: 1 base 259s Histogram detail is: 0 259s Hashing function is: 3 259s Collision profiling is: disabled 259s Repeats are: unmasked 259s Mergefilter is at: 100 259s Random seed: 1710556547 (automatic) 259s Bitscore output: on 259s Leave status records: no 259s Join neighbors is: off 259s Target memory is: 1.24 GB 259s Retain members is: true 259s Store repeatmap? yes 259s Reverse complement data is generated on the fly 259s Rifts allowed: 0 259s Fuzzy Extension: yes 259s Score by minimum pair: yes 259s Gapped anchors: no 259s Large sequence support is: enabled => seqpos is 8 bytes 259s Murasaki version 1.68.6 (LARGESEQ) 259s Loading NZ_GG705104.fna 259s Read 821bp (821 bytesp) in 0.000 seconds (2.7 MBp/s) 259s Done with forward strand (821bp). Preparing reverse complement... 259s <-> Reversing metdata. 259s Done. 259s Seq NZ_GG705104.fna loaded. 821 bytes 259s Loading NZ_GG705104.gbk 259s Read 821bp (821 bytesp) in 0.000 seconds (3.0 MBp/s) 259s Done with forward strand (821bp). Preparing reverse complement... 259s <-> Reversing metdata. 259s Done. 259s Seq NZ_GG705104.gbk loaded. 821 bytes 259s Sequence loading took: 0.001 seconds 259s Forward frequencies: A:28.5018% C:21.6809% G:23.1425% T:26.6748% 259s Global base frequencies: A/T:55.1766% C/G:44.8234% 259s Pat: 3 bases long with weight 2 259s 1 101 259s Computing hash parameters... 259s Using 4 hashbits 259s 0%......... (T -0.136 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 20%......... (T -0.110 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 30%......... (T -0.100 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 40%......... (T -0.083 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 50%......... (T -0.066 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 60%......... (T -0.049 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 70%......... (T -0.033 seconds) ETA: Sat Mar 16 02:35:47 2024 259s 80%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 91%........ 260s Acceptable hash function found after 1000 cycles. 260s Best uses 2/2 bases and has 0 empties from 2 inputs. 260s Score: 0.96875 (cf. worst: -4.51562) 260s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 260s Total correlation penalty: 0 260s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 260s 10 260s == 260s w[ 0]>>29: -.C 260s w[ 0]>>30: A.- 260s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 260s Ecolist (optimistic): Expcted entries per list: 8 260s Ecolist (optimistic): Minimum chunks per list: 4 260s Would take minimum 256.000000 bytes to make perfect hash. 260s Hashing 3.21 KB of sequence requires: 260s ~ linear (in seq length) hashing cost of 5.21 KB 260s ~ linear (in seq length) expected anchor cost of 76.97 KB 260s Initial hash table uses: 256 bytes (4 bits, 16 entries) 260s Expected memory usage (without anchors): 5.46 KB 260s Expected memory usage (with anchors): 82.42 KB 260s Hash parameters computed in 0.169 seconds 260s Creating storage structures: 16 entries in 256 bytes space. 260s Storage structures created in: 0.000 seconds 260s 260s Hashing NZ_GG705104.fna forwards 260s 0%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 91%....... 260s Hashing NZ_GG705104.fna backwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 91%....... 260s Hashing NZ_GG705104.gbk forwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 91%....... 260s Hashing NZ_GG705104.gbk backwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 91%....... 260s Initial hashing took: 0.003 seconds 260s Extracting anchors from hash-space. 260s (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 18%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 31%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 68%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:47 2024 260s 93%. 260s Anchor extraction completed in: 0.003 seconds 260s Total anchors: 0 260s Anchor extraction + merge time: 0.003 seconds 260s Total processing time: 0.176 seconds 260s Writing anchors... 260s Total seeds used in anchors: 16 260s Hash performance: 260s Keys used: 16 out of 16 possible (100.00%). 260s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 260s Average pigeons per pigeon hole: 1 260s Writing 16 repeats...Output writing finished in: 0.001 seconds 260s Total time: 0.177 seconds 260s Murasaki finished! 260s PASSED MURASAKI 260s 260s Testing Genepare on NZ_GG705104.fna 260s 18446744073709551438 260s PASSED GENEPARSE 260s 260s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 260s Testing mbfa on NZ_GG705104.fna 260s PASSED mbfa 260s 260s Test Murasaki on NZ_GG705105.fna 260s Verbosity level is: 0 260s Writing to: output/test 260s Pattern is: 101 260s Max usable hash bits: 27 260s Hit filter is: 0 260s Hash table type is: EcoHash 260s Hashing every: 1 base 260s Histogram detail is: 0 260s Hashing function is: 3 260s Collision profiling is: disabled 260s Repeats are: unmasked 260s Mergefilter is at: 100 260s Random seed: 1710556548 (automatic) 260s Bitscore output: on 260s Leave status records: no 260s Join neighbors is: off 260s Target memory is: 1.24 GB 260s Retain members is: true 260s Store repeatmap? yes 260s Reverse complement data is generated on the fly 260s Rifts allowed: 0 260s Fuzzy Extension: yes 260s Score by minimum pair: yes 260s Gapped anchors: no 260s Large sequence support is: enabled => seqpos is 8 bytes 260s Murasaki version 1.68.6 (LARGESEQ) 260s Loading NZ_GG705105.fna 260s Read 802bp (802 bytesp) in 0.000 seconds (2.7 MBp/s) 260s Done with forward strand (802bp). Preparing reverse complement... 260s <-> Reversing metdata. 260s Done. 260s Seq NZ_GG705105.fna loaded. 802 bytes 260s Loading NZ_GG705105.gbk 260s Read 802bp (802 bytesp) in 0.000 seconds (2.9 MBp/s) 260s Done with forward strand (802bp). Preparing reverse complement... 260s <-> Reversing metdata. 260s Done. 260s Seq NZ_GG705105.gbk loaded. 802 bytes 260s Sequence loading took: 0.001 seconds 260s Forward frequencies: A:33.9152% C:17.7057% G:18.2045% T:30.1746% 260s Global base frequencies: A/T:64.0898% C/G:35.9102% 260s Pat: 3 bases long with weight 2 260s 1 101 260s Computing hash parameters... 260s Using 4 hashbits 260s 0%......... (T -0.150 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.128 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.108 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.096 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.079 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.062 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.047 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.031 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Acceptable hash function found after 1000 cycles. 260s Best uses 2/2 bases and has 0 empties from 2 inputs. 260s Score: 0.96875 (cf. worst: -4.51562) 260s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 260s Total correlation penalty: 0 260s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 260s 10 260s == 260s w[ 0]>>29: -.C 260s w[ 0]>>30: A.- 260s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 260s Ecolist (optimistic): Expcted entries per list: 8 260s Ecolist (optimistic): Minimum chunks per list: 4 260s Would take minimum 256.000000 bytes to make perfect hash. 260s Hashing 3.13 KB of sequence requires: 260s ~ linear (in seq length) hashing cost of 5.09 KB 260s ~ linear (in seq length) expected anchor cost of 75.19 KB 260s Initial hash table uses: 256 bytes (4 bits, 16 entries) 260s Expected memory usage (without anchors): 5.34 KB 260s Expected memory usage (with anchors): 80.53 KB 260s Hash parameters computed in 0.154 seconds 260s Creating storage structures: 16 entries in 256 bytes space. 260s Storage structures created in: 0.000 seconds 260s 260s Hashing NZ_GG705105.fna forwards 260s 0%........ (T -0.007 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%........ (T -0.006 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%........ (T -0.004 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%........ (T -0.003 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%....... 260s Hashing NZ_GG705105.fna backwards 260s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%....... 260s Hashing NZ_GG705105.gbk forwards 260s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%....... 260s Hashing NZ_GG705105.gbk backwards 260s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%....... 260s Initial hashing took: 0.004 seconds 260s Extracting anchors from hash-space. 260s (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 93%. 260s Anchor extraction completed in: 0.002 seconds 260s Total anchors: 0 260s Anchor extraction + merge time: 0.002 seconds 260s Total processing time: 0.161 seconds 260s Writing anchors... 260s Total seeds used in anchors: 16 260s Hash performance: 260s Keys used: 16 out of 16 possible (100.00%). 260s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 260s Average pigeons per pigeon hole: 1 260s Writing 16 repeats...Output writing finished in: 0.001 seconds 260s Total time: 0.162 seconds 260s Murasaki finished! 260s PASSED MURASAKI 260s 260s Testing Genepare on NZ_GG705105.fna 260s 18446744073709551419 260s PASSED GENEPARSE 260s 260s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 260s Testing mbfa on NZ_GG705105.fna 260s PASSED mbfa 260s 260s Test Murasaki on NZ_GG705106.fna 260s Verbosity level is: 0 260s Writing to: output/test 260s Pattern is: 101 260s Max usable hash bits: 27 260s Hit filter is: 0 260s Hash table type is: EcoHash 260s Hashing every: 1 base 260s Histogram detail is: 0 260s Hashing function is: 3 260s Collision profiling is: disabled 260s Repeats are: unmasked 260s Mergefilter is at: 100 260s Random seed: 1710556548 (automatic) 260s Bitscore output: on 260s Leave status records: no 260s Join neighbors is: off 260s Target memory is: 1.24 GB 260s Retain members is: true 260s Store repeatmap? yes 260s Reverse complement data is generated on the fly 260s Rifts allowed: 0 260s Fuzzy Extension: yes 260s Score by minimum pair: yes 260s Gapped anchors: no 260s Large sequence support is: enabled => seqpos is 8 bytes 260s Murasaki version 1.68.6 (LARGESEQ) 260s Loading NZ_GG705106.fna 260s Read 800bp (800 bytesp) in 0.000 seconds (1.8 MBp/s) 260s Done with forward strand (800bp). Preparing reverse complement... 260s <-> Reversing metdata. 260s Done. 260s Seq NZ_GG705106.fna loaded. 800 bytes 260s Loading NZ_GG705106.gbk 260s Read 800bp (800 bytesp) in 0.000 seconds (1.9 MBp/s) 260s Done with forward strand (800bp). Preparing reverse complement... 260s <-> Reversing metdata. 260s Done. 260s Seq NZ_GG705106.gbk loaded. 800 bytes 260s Sequence loading took: 0.002 seconds 260s Forward frequencies: A:28.875% C:18% G:21.625% T:31.5% 260s Global base frequencies: A/T:60.375% C/G:39.625% 260s Pat: 3 bases long with weight 2 260s 1 101 260s Computing hash parameters... 260s Using 4 hashbits 260s 0%......... (T -0.137 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.122 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Acceptable hash function found after 1000 cycles. 260s Best uses 2/2 bases and has 0 empties from 2 inputs. 260s Score: 0.96875 (cf. worst: -4.51562) 260s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 260s Total correlation penalty: 0 260s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 260s 10 260s == 260s w[ 0]>>29: -.C 260s w[ 0]>>30: A.- 260s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 260s Ecolist (optimistic): Expcted entries per list: 8 260s Ecolist (optimistic): Minimum chunks per list: 4 260s Would take minimum 256.000000 bytes to make perfect hash. 260s Hashing 3.12 KB of sequence requires: 260s ~ linear (in seq length) hashing cost of 5.08 KB 260s ~ linear (in seq length) expected anchor cost of 75.00 KB 260s Initial hash table uses: 256 bytes (4 bits, 16 entries) 260s Expected memory usage (without anchors): 5.33 KB 260s Expected memory usage (with anchors): 80.33 KB 260s Hash parameters computed in 0.148 seconds 260s Creating storage structures: 16 entries in 256 bytes space. 260s Storage structures created in: 0.000 seconds 260s 260s Hashing NZ_GG705106.fna forwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 90%......... 260s Hashing NZ_GG705106.fna backwards 260s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 90%......... 260s Hashing NZ_GG705106.gbk forwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 90%......... 260s Hashing NZ_GG705106.gbk backwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 90%......... 260s Initial hashing took: 0.003 seconds 260s Extracting anchors from hash-space. 260s (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 93%. 260s Anchor extraction completed in: 0.001 seconds 260s Total anchors: 0 260s Anchor extraction + merge time: 0.001 seconds 260s Total processing time: 0.155 seconds 260s Writing anchors... 260s Total seeds used in anchors: 16 260s Hash performance: 260s Keys used: 16 out of 16 possible (100.00%). 260s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 260s Average pigeons per pigeon hole: 1 260s Writing 16 repeats...Output writing finished in: 0.001 seconds 260s Total time: 0.156 seconds 260s Murasaki finished! 260s PASSED MURASAKI 260s 260s Testing Genepare on NZ_GG705106.fna 260s 18446744073709551417 260s PASSED GENEPARSE 260s 260s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 260s Testing mbfa on NZ_GG705106.fna 260s PASSED mbfa 260s 260s Test Murasaki on NZ_GG705107.fna 260s Verbosity level is: 0 260s Writing to: output/test 260s Pattern is: 101 260s Max usable hash bits: 27 260s Hit filter is: 0 260s Hash table type is: EcoHash 260s Hashing every: 1 base 260s Histogram detail is: 0 260s Hashing function is: 3 260s Collision profiling is: disabled 260s Repeats are: unmasked 260s Mergefilter is at: 100 260s Random seed: 1710556548 (automatic) 260s Bitscore output: on 260s Leave status records: no 260s Join neighbors is: off 260s Target memory is: 1.24 GB 260s Retain members is: true 260s Store repeatmap? yes 260s Reverse complement data is generated on the fly 260s Rifts allowed: 0 260s Fuzzy Extension: yes 260s Score by minimum pair: yes 260s Gapped anchors: no 260s Large sequence support is: enabled => seqpos is 8 bytes 260s Murasaki version 1.68.6 (LARGESEQ) 260s Loading NZ_GG705107.fna 260s Read 793bp (793 bytesp) in 0.000 seconds (2.3 MBp/s) 260s Done with forward strand (793bp). Preparing reverse complement... 260s <-> Reversing metdata. 260s Done. 260s Seq NZ_GG705107.fna loaded. 793 bytes 260s Loading NZ_GG705107.gbk 260s Read 793bp (793 bytesp) in 0.000 seconds (3.0 MBp/s) 260s Done with forward strand (793bp). Preparing reverse complement... 260s <-> Reversing metdata. 260s Done. 260s Seq NZ_GG705107.gbk loaded. 793 bytes 260s Sequence loading took: 0.001 seconds 260s Forward frequencies: A:29.5082% C:14.3758% G:19.4199% T:36.6961% 260s Global base frequencies: A/T:66.2043% C/G:33.7957% 260s Pat: 3 bases long with weight 2 260s 1 101 260s Computing hash parameters... 260s Using 4 hashbits 260s 0%......... (T -0.136 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.122 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.106 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Acceptable hash function found after 1000 cycles. 260s Best uses 2/2 bases and has 0 empties from 2 inputs. 260s Score: 0.96875 (cf. worst: -4.51562) 260s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 260s Total correlation penalty: 0 260s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 260s 10 260s == 260s w[ 0]>>29: -.C 260s w[ 0]>>30: A.- 260s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 260s Ecolist (optimistic): Expcted entries per list: 8 260s Ecolist (optimistic): Minimum chunks per list: 4 260s Would take minimum 256.000000 bytes to make perfect hash. 260s Hashing 3.10 KB of sequence requires: 260s ~ linear (in seq length) hashing cost of 5.03 KB 260s ~ linear (in seq length) expected anchor cost of 74.34 KB 260s Initial hash table uses: 256 bytes (4 bits, 16 entries) 260s Expected memory usage (without anchors): 5.28 KB 260s Expected memory usage (with anchors): 79.62 KB 260s Hash parameters computed in 0.150 seconds 260s Creating storage structures: 16 entries in 256 bytes space. 260s Storage structures created in: 0.000 seconds 260s 260s Hashing NZ_GG705107.fna forwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Hashing NZ_GG705107.fna backwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Hashing NZ_GG705107.gbk forwards 260s 0%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Hashing NZ_GG705107.gbk backwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Initial hashing took: 0.005 seconds 260s Extracting anchors from hash-space. 260s (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 93%. 260s Anchor extraction completed in: 0.002 seconds 260s Total anchors: 0 260s Anchor extraction + merge time: 0.002 seconds 260s Total processing time: 0.158 seconds 260s Writing anchors... 260s Total seeds used in anchors: 16 260s Hash performance: 260s Keys used: 16 out of 16 possible (100.00%). 260s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 260s Average pigeons per pigeon hole: 1 260s Writing 16 repeats...Output writing finished in: 0.001 seconds 260s Total time: 0.159 seconds 260s Murasaki finished! 260s PASSED MURASAKI 260s 260s Testing Genepare on NZ_GG705107.fna 260s 18446744073709551410 260s PASSED GENEPARSE 260s 260s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 260s Testing mbfa on NZ_GG705107.fna 260s PASSED mbfa 260s 260s Test Murasaki on NZ_GG705108.fna 260s Verbosity level is: 0 260s Writing to: output/test 260s Pattern is: 101 260s Max usable hash bits: 27 260s Hit filter is: 0 260s Hash table type is: EcoHash 260s Hashing every: 1 base 260s Histogram detail is: 0 260s Hashing function is: 3 260s Collision profiling is: disabled 260s Repeats are: unmasked 260s Mergefilter is at: 100 260s Random seed: 1710556548 (automatic) 260s Bitscore output: on 260s Leave status records: no 260s Join neighbors is: off 260s Target memory is: 1.24 GB 260s Retain members is: true 260s Store repeatmap? yes 260s Reverse complement data is generated on the fly 260s Rifts allowed: 0 260s Fuzzy Extension: yes 260s Score by minimum pair: yes 260s Gapped anchors: no 260s Large sequence support is: enabled => seqpos is 8 bytes 260s Murasaki version 1.68.6 (LARGESEQ) 260s Loading NZ_GG705108.fna 260s Read 792bp (792 bytesp) in 0.000 seconds (1.6 MBp/s) 260s Done with forward strand (792bp). Preparing reverse complement... 260s <-> Reversing metdata. 260s Done. 260s Seq NZ_GG705108.fna loaded. 792 bytes 260s Loading NZ_GG705108.gbk 260s Read 792bp (792 bytesp) in 0.000 seconds (1.9 MBp/s) 260s Done with forward strand (792bp). Preparing reverse complement... 260s <-> Reversing metdata. 260s Done. 260s Seq NZ_GG705108.gbk loaded. 792 bytes 260s Sequence loading took: 0.002 seconds 260s Forward frequencies: A:34.9747% C:15.6566% G:20.8333% T:28.5354% 260s Global base frequencies: A/T:63.5101% C/G:36.4899% 260s Pat: 3 bases long with weight 2 260s 1 101 260s Computing hash parameters... 260s Using 4 hashbits 260s 0%......... (T -0.136 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.122 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.106 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Acceptable hash function found after 1000 cycles. 260s Best uses 2/2 bases and has 0 empties from 2 inputs. 260s Score: 0.96875 (cf. worst: -4.51562) 260s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 260s Total correlation penalty: 0 260s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 260s 10 260s == 260s w[ 0]>>29: -.C 260s w[ 0]>>30: A.- 260s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 260s Ecolist (optimistic): Expcted entries per list: 8 260s Ecolist (optimistic): Minimum chunks per list: 4 260s Would take minimum 256.000000 bytes to make perfect hash. 260s Hashing 3.09 KB of sequence requires: 260s ~ linear (in seq length) hashing cost of 5.03 KB 260s ~ linear (in seq length) expected anchor cost of 74.25 KB 260s Initial hash table uses: 256 bytes (4 bits, 16 entries) 260s Expected memory usage (without anchors): 5.28 KB 260s Expected memory usage (with anchors): 79.53 KB 260s Hash parameters computed in 0.149 seconds 260s Creating storage structures: 16 entries in 256 bytes space. 260s Storage structures created in: 0.000 seconds 260s 260s Hashing NZ_GG705108.fna forwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Hashing NZ_GG705108.fna backwards 260s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Hashing NZ_GG705108.gbk forwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Hashing NZ_GG705108.gbk backwards 260s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 91%........ 260s Initial hashing took: 0.005 seconds 260s Extracting anchors from hash-space. 260s (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:48 2024 260s 93%. 260s Anchor extraction completed in: 0.002 seconds 260s Total anchors: 0 260s Anchor extraction + merge time: 0.002 seconds 260s Total processing time: 0.158 seconds 260s Writing anchors... 260s Total seeds used in anchors: 16 260s Hash performance: 260s Keys used: 16 out of 16 possible (100.00%). 260s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 260s Average pigeons per pigeon hole: 1 260s Writing 16 repeats...Output writing finished in: 0.001 seconds 260s Total time: 0.159 seconds 260s Murasaki finished! 260s PASSED MURASAKI 260s 260s Testing Genepare on NZ_GG705108.fna 260s 18446744073709551409 260s PASSED GENEPARSE 260s 260s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 260s Testing mbfa on NZ_GG705108.fna 260s PASSED mbfa 260s 260s Test Murasaki on NZ_GG705109.fna 260s Verbosity level is: 0 260s Writing to: output/test 260s Pattern is: 101 260s Max usable hash bits: 27 260s Hit filter is: 0 260s Hash table type is: EcoHash 260s Hashing every: 1 base 260s Histogram detail is: 0 260s Hashing function is: 3 260s Collision profiling is: disabled 260s Repeats are: unmasked 260s Mergefilter is at: 100 260s Random seed: 1710556548 (automatic) 260s Bitscore output: on 260s Leave status records: no 260s Join neighbors is: off 260s Target memory is: 1.24 GB 260s Retain members is: true 260s Store repeatmap? yes 260s Reverse complement data is generated on the fly 260s Rifts allowed: 0 260s Fuzzy Extension: yes 260s Score by minimum pair: yes 260s Gapped anchors: no 260s Large sequence support is: enabled => seqpos is 8 bytes 260s Murasaki version 1.68.6 (LARGESEQ) 260s Loading NZ_GG705109.fna 260s Read 790bp (790 bytesp) in 0.000 seconds (2.7 MBp/s) 260s Done with forward strand (790bp). Preparing reverse complement... 260s <-> Reversing metdata. 260s Done. 260s Seq NZ_GG705109.fna loaded. 790 bytes 260s Loading NZ_GG705109.gbk 260s Read 790bp (790 bytesp) in 0.000 seconds (2.8 MBp/s) 260s Done with forward strand (790bp). Preparing reverse complement... 260s <-> Reversing metdata. 260s Done. 260s Seq NZ_GG705109.gbk loaded. 790 bytes 260s Sequence loading took: 0.001 seconds 260s Forward frequencies: A:27.5949% C:25.0633% G:23.038% T:24.3038% 260s Global base frequencies: A/T:51.8987% C/G:48.1013% 260s Pat: 3 bases long with weight 2 260s 1 101 260s Computing hash parameters... 260s Using 4 hashbits 260s 0%......... (T -0.135 seconds) ETA: Sat Mar 16 02:35:49 2024 260s 10%......... (T -0.121 seconds) ETA: Sat Mar 16 02:35:49 2024 260s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:49 2024 260s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:49 2024 260s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:49 2024 260s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 91%........ 261s Acceptable hash function found after 1000 cycles. 261s Best uses 2/2 bases and has 0 empties from 2 inputs. 261s Score: 0.96875 (cf. worst: -4.51562) 261s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 261s Total correlation penalty: 0 261s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 261s 10 261s == 261s w[ 0]>>29: -.C 261s w[ 0]>>30: A.- 261s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 261s Ecolist (optimistic): Expcted entries per list: 8 261s Ecolist (optimistic): Minimum chunks per list: 4 261s Would take minimum 256.000000 bytes to make perfect hash. 261s Hashing 3.09 KB of sequence requires: 261s ~ linear (in seq length) hashing cost of 5.01 KB 261s ~ linear (in seq length) expected anchor cost of 74.06 KB 261s Initial hash table uses: 256 bytes (4 bits, 16 entries) 261s Expected memory usage (without anchors): 5.26 KB 261s Expected memory usage (with anchors): 79.33 KB 261s Hash parameters computed in 0.150 seconds 261s Creating storage structures: 16 entries in 256 bytes space. 261s Storage structures created in: 0.000 seconds 261s 261s Hashing NZ_GG705109.fna forwards 261s 0%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705109.fna backwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705109.gbk forwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705109.gbk backwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Initial hashing took: 0.003 seconds 261s Extracting anchors from hash-space. 261s (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 93%. 261s Anchor extraction completed in: 0.002 seconds 261s Total anchors: 0 261s Anchor extraction + merge time: 0.002 seconds 261s Total processing time: 0.156 seconds 261s Writing anchors... 261s Total seeds used in anchors: 16 261s Hash performance: 261s Keys used: 16 out of 16 possible (100.00%). 261s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 261s Average pigeons per pigeon hole: 1 261s Writing 16 repeats...Output writing finished in: 0.001 seconds 261s Total time: 0.157 seconds 261s Murasaki finished! 261s PASSED MURASAKI 261s 261s Testing Genepare on NZ_GG705109.fna 261s 18446744073709551407 261s PASSED GENEPARSE 261s 261s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 261s Testing mbfa on NZ_GG705109.fna 261s PASSED mbfa 261s 261s Test Murasaki on NZ_GG705110.fna 261s Verbosity level is: 0 261s Writing to: output/test 261s Pattern is: 101 261s Max usable hash bits: 27 261s Hit filter is: 0 261s Hash table type is: EcoHash 261s Hashing every: 1 base 261s Histogram detail is: 0 261s Hashing function is: 3 261s Collision profiling is: disabled 261s Repeats are: unmasked 261s Mergefilter is at: 100 261s Random seed: 1710556549 (automatic) 261s Bitscore output: on 261s Leave status records: no 261s Join neighbors is: off 261s Target memory is: 1.24 GB 261s Retain members is: true 261s Store repeatmap? yes 261s Reverse complement data is generated on the fly 261s Rifts allowed: 0 261s Fuzzy Extension: yes 261s Score by minimum pair: yes 261s Gapped anchors: no 261s Large sequence support is: enabled => seqpos is 8 bytes 261s Murasaki version 1.68.6 (LARGESEQ) 261s Loading NZ_GG705110.fna 261s Read 789bp (789 bytesp) in 0.000 seconds (2.7 MBp/s) 261s Done with forward strand (789bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705110.fna loaded. 789 bytes 261s Loading NZ_GG705110.gbk 261s Read 789bp (789 bytesp) in 0.000 seconds (2.3 MBp/s) 261s Done with forward strand (789bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705110.gbk loaded. 789 bytes 261s Sequence loading took: 0.001 seconds 261s Forward frequencies: A:28.6439% C:19.5184% G:16.0963% T:35.7414% 261s Global base frequencies: A/T:64.3853% C/G:35.6147% 261s Pat: 3 bases long with weight 2 261s 1 101 261s Computing hash parameters... 261s Using 4 hashbits 261s 0%......... (T -0.135 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.106 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 91%........ 261s Acceptable hash function found after 1000 cycles. 261s Best uses 2/2 bases and has 0 empties from 2 inputs. 261s Score: 0.96875 (cf. worst: -4.51562) 261s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 261s Total correlation penalty: 0 261s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 261s 10 261s == 261s w[ 0]>>29: -.C 261s w[ 0]>>30: A.- 261s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 261s Ecolist (optimistic): Expcted entries per list: 8 261s Ecolist (optimistic): Minimum chunks per list: 4 261s Would take minimum 256.000000 bytes to make perfect hash. 261s Hashing 3.08 KB of sequence requires: 261s ~ linear (in seq length) hashing cost of 5.00 KB 261s ~ linear (in seq length) expected anchor cost of 73.97 KB 261s Initial hash table uses: 256 bytes (4 bits, 16 entries) 261s Expected memory usage (without anchors): 5.25 KB 261s Expected memory usage (with anchors): 79.22 KB 261s Hash parameters computed in 0.148 seconds 261s Creating storage structures: 16 entries in 256 bytes space. 261s Storage structures created in: 0.000 seconds 261s 261s Hashing NZ_GG705110.fna forwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705110.fna backwards 261s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705110.gbk forwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705110.gbk backwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Initial hashing took: 0.006 seconds 261s Extracting anchors from hash-space. 261s (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 6%. (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 93%. 261s Anchor extraction completed in: 0.002 seconds 261s Total anchors: 0 261s Anchor extraction + merge time: 0.002 seconds 261s Total processing time: 0.157 seconds 261s Writing anchors... 261s Total seeds used in anchors: 16 261s Hash performance: 261s Keys used: 16 out of 16 possible (100.00%). 261s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 261s Average pigeons per pigeon hole: 1 261s Writing 16 repeats...Output writing finished in: 0.002 seconds 261s Total time: 0.159 seconds 261s Murasaki finished! 261s PASSED MURASAKI 261s 261s Testing Genepare on NZ_GG705110.fna 261s 18446744073709551406 261s PASSED GENEPARSE 261s 261s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 261s Testing mbfa on NZ_GG705110.fna 261s PASSED mbfa 261s 261s Test Murasaki on NZ_GG705111.fna 261s Verbosity level is: 0 261s Writing to: output/test 261s Pattern is: 101 261s Max usable hash bits: 27 261s Hit filter is: 0 261s Hash table type is: EcoHash 261s Hashing every: 1 base 261s Histogram detail is: 0 261s Hashing function is: 3 261s Collision profiling is: disabled 261s Repeats are: unmasked 261s Mergefilter is at: 100 261s Random seed: 1710556549 (automatic) 261s Bitscore output: on 261s Leave status records: no 261s Join neighbors is: off 261s Target memory is: 1.24 GB 261s Retain members is: true 261s Store repeatmap? yes 261s Reverse complement data is generated on the fly 261s Rifts allowed: 0 261s Fuzzy Extension: yes 261s Score by minimum pair: yes 261s Gapped anchors: no 261s Large sequence support is: enabled => seqpos is 8 bytes 261s Murasaki version 1.68.6 (LARGESEQ) 261s Loading NZ_GG705111.fna 261s Read 788bp (788 bytesp) in 0.000 seconds (1.8 MBp/s) 261s Done with forward strand (788bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705111.fna loaded. 788 bytes 261s Loading NZ_GG705111.gbk 261s Read 788bp (788 bytesp) in 0.000 seconds (2.4 MBp/s) 261s Done with forward strand (788bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705111.gbk loaded. 788 bytes 261s Sequence loading took: 0.001 seconds 261s Forward frequencies: A:35.1523% C:15.3553% G:20.0508% T:29.4416% 261s Global base frequencies: A/T:64.5939% C/G:35.4061% 261s Pat: 3 bases long with weight 2 261s 1 101 261s Computing hash parameters... 261s Using 4 hashbits 261s 0%......... (T -0.133 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.119 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.104 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 91%........ 261s Acceptable hash function found after 1000 cycles. 261s Best uses 2/2 bases and has 0 empties from 2 inputs. 261s Score: 0.96875 (cf. worst: -4.51562) 261s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 261s Total correlation penalty: 0 261s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 261s 10 261s == 261s w[ 0]>>29: -.C 261s w[ 0]>>30: A.- 261s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 261s Ecolist (optimistic): Expcted entries per list: 8 261s Ecolist (optimistic): Minimum chunks per list: 4 261s Would take minimum 256.000000 bytes to make perfect hash. 261s Hashing 3.08 KB of sequence requires: 261s ~ linear (in seq length) hashing cost of 5.00 KB 261s ~ linear (in seq length) expected anchor cost of 73.88 KB 261s Initial hash table uses: 256 bytes (4 bits, 16 entries) 261s Expected memory usage (without anchors): 5.25 KB 261s Expected memory usage (with anchors): 79.13 KB 261s Hash parameters computed in 0.147 seconds 261s Creating storage structures: 16 entries in 256 bytes space. 261s Storage structures created in: 0.000 seconds 261s 261s Hashing NZ_GG705111.fna forwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705111.fna backwards 261s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705111.gbk forwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705111.gbk backwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Initial hashing took: 0.005 seconds 261s Extracting anchors from hash-space. 261s (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 93%. 261s Anchor extraction completed in: 0.002 seconds 261s Total anchors: 0 261s Anchor extraction + merge time: 0.002 seconds 261s Total processing time: 0.155 seconds 261s Writing anchors... 261s Total seeds used in anchors: 16 261s Hash performance: 261s Keys used: 16 out of 16 possible (100.00%). 261s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 261s Average pigeons per pigeon hole: 1 261s Writing 16 repeats...Output writing finished in: 0.001 seconds 261s Total time: 0.155 seconds 261s Murasaki finished! 261s PASSED MURASAKI 261s 261s Testing Genepare on NZ_GG705111.fna 261s 18446744073709551405 261s PASSED GENEPARSE 261s 261s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 261s Testing mbfa on NZ_GG705111.fna 261s PASSED mbfa 261s 261s Test Murasaki on NZ_GG705112.fna 261s Verbosity level is: 0 261s Writing to: output/test 261s Pattern is: 101 261s Max usable hash bits: 27 261s Hit filter is: 0 261s Hash table type is: EcoHash 261s Hashing every: 1 base 261s Histogram detail is: 0 261s Hashing function is: 3 261s Collision profiling is: disabled 261s Repeats are: unmasked 261s Mergefilter is at: 100 261s Random seed: 1710556549 (automatic) 261s Bitscore output: on 261s Leave status records: no 261s Join neighbors is: off 261s Target memory is: 1.24 GB 261s Retain members is: true 261s Store repeatmap? yes 261s Reverse complement data is generated on the fly 261s Rifts allowed: 0 261s Fuzzy Extension: yes 261s Score by minimum pair: yes 261s Gapped anchors: no 261s Large sequence support is: enabled => seqpos is 8 bytes 261s Murasaki version 1.68.6 (LARGESEQ) 261s Loading NZ_GG705112.fna 261s Read 787bp (787 bytesp) in 0.000 seconds (2.5 MBp/s) 261s Done with forward strand (787bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705112.fna loaded. 787 bytes 261s Loading NZ_GG705112.gbk 261s Read 787bp (787 bytesp) in 0.000 seconds (1.9 MBp/s) 261s Done with forward strand (787bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705112.gbk loaded. 787 bytes 261s Sequence loading took: 0.002 seconds 261s Forward frequencies: A:29.352% C:21.601% G:15.5019% T:33.5451% 261s Global base frequencies: A/T:62.8971% C/G:37.1029% 261s Pat: 3 bases long with weight 2 261s 1 101 261s Computing hash parameters... 261s Using 4 hashbits 261s 0%......... (T -0.132 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 91%........ 261s Acceptable hash function found after 1000 cycles. 261s Best uses 2/2 bases and has 0 empties from 2 inputs. 261s Score: 0.96875 (cf. worst: -4.51562) 261s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 261s Total correlation penalty: 0 261s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 261s 10 261s == 261s w[ 0]>>29: -.C 261s w[ 0]>>30: A.- 261s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 261s Ecolist (optimistic): Expcted entries per list: 8 261s Ecolist (optimistic): Minimum chunks per list: 4 261s Would take minimum 256.000000 bytes to make perfect hash. 261s Hashing 3.07 KB of sequence requires: 261s ~ linear (in seq length) hashing cost of 4.99 KB 261s ~ linear (in seq length) expected anchor cost of 73.78 KB 261s Initial hash table uses: 256 bytes (4 bits, 16 entries) 261s Expected memory usage (without anchors): 5.24 KB 261s Expected memory usage (with anchors): 79.02 KB 261s Hash parameters computed in 0.147 seconds 261s Creating storage structures: 16 entries in 256 bytes space. 261s Storage structures created in: 0.000 seconds 261s 261s Hashing NZ_GG705112.fna forwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705112.fna backwards 261s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705112.gbk forwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Hashing NZ_GG705112.gbk backwards 261s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%......... 261s Initial hashing took: 0.004 seconds 261s Extracting anchors from hash-space. 261s (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 93%. 261s Anchor extraction completed in: 0.002 seconds 261s Total anchors: 0 261s Anchor extraction + merge time: 0.002 seconds 261s Total processing time: 0.155 seconds 261s Writing anchors... 261s Total seeds used in anchors: 16 261s Hash performance: 261s Keys used: 16 out of 16 possible (100.00%). 261s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 261s Average pigeons per pigeon hole: 1 261s Writing 16 repeats...Output writing finished in: 0.001 seconds 261s Total time: 0.156 seconds 261s Murasaki finished! 261s PASSED MURASAKI 261s 261s Testing Genepare on NZ_GG705112.fna 261s 18446744073709551404 261s PASSED GENEPARSE 261s 261s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 261s Testing mbfa on NZ_GG705112.fna 261s PASSED mbfa 261s 261s Test Murasaki on NZ_GG705113.fna 261s Verbosity level is: 0 261s Writing to: output/test 261s Pattern is: 101 261s Max usable hash bits: 27 261s Hit filter is: 0 261s Hash table type is: EcoHash 261s Hashing every: 1 base 261s Histogram detail is: 0 261s Hashing function is: 3 261s Collision profiling is: disabled 261s Repeats are: unmasked 261s Mergefilter is at: 100 261s Random seed: 1710556549 (automatic) 261s Bitscore output: on 261s Leave status records: no 261s Join neighbors is: off 261s Target memory is: 1.24 GB 261s Retain members is: true 261s Store repeatmap? yes 261s Reverse complement data is generated on the fly 261s Rifts allowed: 0 261s Fuzzy Extension: yes 261s Score by minimum pair: yes 261s Gapped anchors: no 261s Large sequence support is: enabled => seqpos is 8 bytes 261s Murasaki version 1.68.6 (LARGESEQ) 261s Loading NZ_GG705113.fna 261s Read 776bp (776 bytesp) in 0.000 seconds (2.6 MBp/s) 261s Done with forward strand (776bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705113.fna loaded. 776 bytes 261s Loading NZ_GG705113.gbk 261s Read 776bp (776 bytesp) in 0.000 seconds (2.4 MBp/s) 261s Done with forward strand (776bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705113.gbk loaded. 776 bytes 261s Sequence loading took: 0.001 seconds 261s Forward frequencies: A:27.3196% C:23.7113% G:22.6804% T:26.2887% 261s Global base frequencies: A/T:53.6082% C/G:46.3918% 261s Pat: 3 bases long with weight 2 261s 1 101 261s Computing hash parameters... 261s Using 4 hashbits 261s 0%......... (T -0.134 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.119 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.073 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 91%........ 261s Acceptable hash function found after 1000 cycles. 261s Best uses 2/2 bases and has 0 empties from 2 inputs. 261s Score: 0.96875 (cf. worst: -4.51562) 261s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 261s Total correlation penalty: 0 261s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 261s 10 261s == 261s w[ 0]>>29: -.C 261s w[ 0]>>30: A.- 261s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 261s Ecolist (optimistic): Expcted entries per list: 8 261s Ecolist (optimistic): Minimum chunks per list: 4 261s Would take minimum 256.000000 bytes to make perfect hash. 261s Hashing 3.03 KB of sequence requires: 261s ~ linear (in seq length) hashing cost of 4.93 KB 261s ~ linear (in seq length) expected anchor cost of 72.75 KB 261s Initial hash table uses: 256 bytes (4 bits, 16 entries) 261s Expected memory usage (without anchors): 5.18 KB 261s Expected memory usage (with anchors): 77.93 KB 261s Hash parameters computed in 0.152 seconds 261s Creating storage structures: 16 entries in 256 bytes space. 261s Storage structures created in: 0.000 seconds 261s 261s Hashing NZ_GG705113.fna forwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%........ 261s Hashing NZ_GG705113.fna backwards 261s 0%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%........ 261s Hashing NZ_GG705113.gbk forwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%........ 261s Hashing NZ_GG705113.gbk backwards 261s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 90%........ 261s Initial hashing took: 0.003 seconds 261s Extracting anchors from hash-space. 261s (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:49 2024 261s 93%. 261s Anchor extraction completed in: 0.002 seconds 261s Total anchors: 0 261s Anchor extraction + merge time: 0.002 seconds 261s Total processing time: 0.158 seconds 261s Writing anchors... 261s Total seeds used in anchors: 16 261s Hash performance: 261s Keys used: 16 out of 16 possible (100.00%). 261s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 261s Average pigeons per pigeon hole: 1 261s Writing 16 repeats...Output writing finished in: 0.001 seconds 261s Total time: 0.160 seconds 261s Murasaki finished! 261s PASSED MURASAKI 261s 261s Testing Genepare on NZ_GG705113.fna 261s 18446744073709551393 261s PASSED GENEPARSE 261s 261s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 261s Testing mbfa on NZ_GG705113.fna 261s PASSED mbfa 261s 261s Test Murasaki on NZ_GG705114.fna 261s Verbosity level is: 0 261s Writing to: output/test 261s Pattern is: 101 261s Max usable hash bits: 27 261s Hit filter is: 0 261s Hash table type is: EcoHash 261s Hashing every: 1 base 261s Histogram detail is: 0 261s Hashing function is: 3 261s Collision profiling is: disabled 261s Repeats are: unmasked 261s Mergefilter is at: 100 261s Random seed: 1710556549 (automatic) 261s Bitscore output: on 261s Leave status records: no 261s Join neighbors is: off 261s Target memory is: 1.24 GB 261s Retain members is: true 261s Store repeatmap? yes 261s Reverse complement data is generated on the fly 261s Rifts allowed: 0 261s Fuzzy Extension: yes 261s Score by minimum pair: yes 261s Gapped anchors: no 261s Large sequence support is: enabled => seqpos is 8 bytes 261s Murasaki version 1.68.6 (LARGESEQ) 261s Loading NZ_GG705114.fna 261s Read 713bp (713 bytesp) in 0.000 seconds (2.4 MBp/s) 261s Done with forward strand (713bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705114.fna loaded. 713 bytes 261s Loading NZ_GG705114.gbk 261s Read 713bp (713 bytesp) in 0.000 seconds (2.7 MBp/s) 261s Done with forward strand (713bp). Preparing reverse complement... 261s <-> Reversing metdata. 261s Done. 261s Seq NZ_GG705114.gbk loaded. 713 bytes 261s Sequence loading took: 0.001 seconds 261s Forward frequencies: A:27.3492% C:13.0435% G:17.2511% T:42.3562% 261s Global base frequencies: A/T:69.7055% C/G:30.2945% 261s Pat: 3 bases long with weight 2 261s 1 101 261s Computing hash parameters... 261s Using 4 hashbits 261s 0%......... (T -0.133 seconds) ETA: Sat Mar 16 02:35:50 2024 261s 10%......... (T -0.118 seconds) ETA: Sat Mar 16 02:35:50 2024 261s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:50 2024 261s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:50 2024 261s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 91%........ 262s Acceptable hash function found after 1000 cycles. 262s Best uses 2/2 bases and has 0 empties from 2 inputs. 262s Score: 0.96875 (cf. worst: -4.51562) 262s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 262s Total correlation penalty: 0 262s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 262s 10 262s == 262s w[ 0]>>29: -.C 262s w[ 0]>>30: A.- 262s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 262s Ecolist (optimistic): Expcted entries per list: 8 262s Ecolist (optimistic): Minimum chunks per list: 4 262s Would take minimum 256.000000 bytes to make perfect hash. 262s Hashing 2.79 KB of sequence requires: 262s ~ linear (in seq length) hashing cost of 4.52 KB 262s ~ linear (in seq length) expected anchor cost of 66.84 KB 262s Initial hash table uses: 256 bytes (4 bits, 16 entries) 262s Expected memory usage (without anchors): 4.77 KB 262s Expected memory usage (with anchors): 71.61 KB 262s Hash parameters computed in 0.148 seconds 262s Creating storage structures: 16 entries in 256 bytes space. 262s Storage structures created in: 0.000 seconds 262s 262s Hashing NZ_GG705114.fna forwards 262s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 91%....... 262s Hashing NZ_GG705114.fna backwards 262s 0%........ (T -0.003 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 91%....... 262s Hashing NZ_GG705114.gbk forwards 262s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 91%....... 262s Hashing NZ_GG705114.gbk backwards 262s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 91%....... 262s Initial hashing took: 0.007 seconds 262s Extracting anchors from hash-space. 262s (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 93%. 262s Anchor extraction completed in: 0.002 seconds 262s Total anchors: 0 262s Anchor extraction + merge time: 0.002 seconds 262s Total processing time: 0.157 seconds 262s Writing anchors... 262s Total seeds used in anchors: 16 262s Hash performance: 262s Keys used: 16 out of 16 possible (100.00%). 262s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 262s Average pigeons per pigeon hole: 1 262s Writing 16 repeats...Output writing finished in: 0.001 seconds 262s Total time: 0.158 seconds 262s Murasaki finished! 262s PASSED MURASAKI 262s 262s Testing Genepare on NZ_GG705114.fna 262s 18446744073709551330 262s PASSED GENEPARSE 262s 262s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 262s Testing mbfa on NZ_GG705114.fna 262s PASSED mbfa 262s 262s Test Murasaki on NZ_GG705115.fna 262s Verbosity level is: 0 262s Writing to: output/test 262s Pattern is: 101 262s Max usable hash bits: 27 262s Hit filter is: 0 262s Hash table type is: EcoHash 262s Hashing every: 1 base 262s Histogram detail is: 0 262s Hashing function is: 3 262s Collision profiling is: disabled 262s Repeats are: unmasked 262s Mergefilter is at: 100 262s Random seed: 1710556550 (automatic) 262s Bitscore output: on 262s Leave status records: no 262s Join neighbors is: off 262s Target memory is: 1.24 GB 262s Retain members is: true 262s Store repeatmap? yes 262s Reverse complement data is generated on the fly 262s Rifts allowed: 0 262s Fuzzy Extension: yes 262s Score by minimum pair: yes 262s Gapped anchors: no 262s Large sequence support is: enabled => seqpos is 8 bytes 262s Murasaki version 1.68.6 (LARGESEQ) 262s Loading NZ_GG705115.fna 262s Read 687bp (687 bytesp) in 0.000 seconds (2.4 MBp/s) 262s Done with forward strand (687bp). Preparing reverse complement... 262s <-> Reversing metdata. 262s Done. 262s Seq NZ_GG705115.fna loaded. 687 bytes 262s Loading NZ_GG705115.gbk 262s Read 687bp (687 bytesp) in 0.000 seconds (1.6 MBp/s) 262s Done with forward strand (687bp). Preparing reverse complement... 262s <-> Reversing metdata. 262s Done. 262s Seq NZ_GG705115.gbk loaded. 687 bytes 262s Sequence loading took: 0.001 seconds 262s Forward frequencies: A:36.3901% C:17.6128% G:19.5051% T:26.492% 262s Global base frequencies: A/T:62.8821% C/G:37.1179% 262s Pat: 3 bases long with weight 2 262s 1 101 262s Computing hash parameters... 262s Using 4 hashbits 262s 0%......... (T -0.136 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.121 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.106 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 91%........ 262s Acceptable hash function found after 1000 cycles. 262s Best uses 2/2 bases and has 0 empties from 2 inputs. 262s Score: 0.96875 (cf. worst: -4.51562) 262s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 262s Total correlation penalty: 0 262s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 262s 10 262s == 262s w[ 0]>>29: -.C 262s w[ 0]>>30: A.- 262s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 262s Ecolist (optimistic): Expcted entries per list: 8 262s Ecolist (optimistic): Minimum chunks per list: 4 262s Would take minimum 256.000000 bytes to make perfect hash. 262s Hashing 2.68 KB of sequence requires: 262s ~ linear (in seq length) hashing cost of 4.35 KB 262s ~ linear (in seq length) expected anchor cost of 64.41 KB 262s Initial hash table uses: 256 bytes (4 bits, 16 entries) 262s Expected memory usage (without anchors): 4.60 KB 262s Expected memory usage (with anchors): 69.01 KB 262s Hash parameters computed in 0.151 seconds 262s Creating storage structures: 16 entries in 256 bytes space. 262s Storage structures created in: 0.000 seconds 262s 262s Hashing NZ_GG705115.fna forwards 262s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705115.fna backwards 262s 0%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705115.gbk forwards 262s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705115.gbk backwards 262s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Initial hashing took: 0.005 seconds 262s Extracting anchors from hash-space. 262s (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 93%. 262s Anchor extraction completed in: 0.002 seconds 262s Total anchors: 0 262s Anchor extraction + merge time: 0.002 seconds 262s Total processing time: 0.159 seconds 262s Writing anchors... 262s Total seeds used in anchors: 16 262s Hash performance: 262s Keys used: 16 out of 16 possible (100.00%). 262s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 262s Average pigeons per pigeon hole: 1 262s Writing 16 repeats...Output writing finished in: 0.001 seconds 262s Total time: 0.160 seconds 262s Murasaki finished! 262s PASSED MURASAKI 262s 262s Testing Genepare on NZ_GG705115.fna 262s 18446744073709551304 262s PASSED GENEPARSE 262s 262s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 262s Testing mbfa on NZ_GG705115.fna 262s PASSED mbfa 262s 262s Test Murasaki on NZ_GG705116.fna 262s Verbosity level is: 0 262s Writing to: output/test 262s Pattern is: 101 262s Max usable hash bits: 27 262s Hit filter is: 0 262s Hash table type is: EcoHash 262s Hashing every: 1 base 262s Histogram detail is: 0 262s Hashing function is: 3 262s Collision profiling is: disabled 262s Repeats are: unmasked 262s Mergefilter is at: 100 262s Random seed: 1710556550 (automatic) 262s Bitscore output: on 262s Leave status records: no 262s Join neighbors is: off 262s Target memory is: 1.24 GB 262s Retain members is: true 262s Store repeatmap? yes 262s Reverse complement data is generated on the fly 262s Rifts allowed: 0 262s Fuzzy Extension: yes 262s Score by minimum pair: yes 262s Gapped anchors: no 262s Large sequence support is: enabled => seqpos is 8 bytes 262s Murasaki version 1.68.6 (LARGESEQ) 262s Loading NZ_GG705116.fna 262s Read 687bp (687 bytesp) in 0.000 seconds (1.7 MBp/s) 262s Done with forward strand (687bp). Preparing reverse complement... 262s <-> Reversing metdata. 262s Done. 262s Seq NZ_GG705116.fna loaded. 687 bytes 262s Loading NZ_GG705116.gbk 262s Read 687bp (687 bytesp) in 0.000 seconds (1.7 MBp/s) 262s Done with forward strand (687bp). Preparing reverse complement... 262s <-> Reversing metdata. 262s Done. 262s Seq NZ_GG705116.gbk loaded. 687 bytes 262s Sequence loading took: 0.001 seconds 262s Forward frequencies: A:36.3901% C:18.0495% G:19.7962% T:25.7642% 262s Global base frequencies: A/T:62.1543% C/G:37.8457% 262s Pat: 3 bases long with weight 2 262s 1 101 262s Computing hash parameters... 262s Using 4 hashbits 262s 0%......... (T -0.137 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.104 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 91%........ 262s Acceptable hash function found after 1000 cycles. 262s Best uses 2/2 bases and has 0 empties from 2 inputs. 262s Score: 0.96875 (cf. worst: -4.51562) 262s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 262s Total correlation penalty: 0 262s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 262s 10 262s == 262s w[ 0]>>29: -.C 262s w[ 0]>>30: A.- 262s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 262s Ecolist (optimistic): Expcted entries per list: 8 262s Ecolist (optimistic): Minimum chunks per list: 4 262s Would take minimum 256.000000 bytes to make perfect hash. 262s Hashing 2.68 KB of sequence requires: 262s ~ linear (in seq length) hashing cost of 4.35 KB 262s ~ linear (in seq length) expected anchor cost of 64.41 KB 262s Initial hash table uses: 256 bytes (4 bits, 16 entries) 262s Expected memory usage (without anchors): 4.60 KB 262s Expected memory usage (with anchors): 69.01 KB 262s Hash parameters computed in 0.149 seconds 262s Creating storage structures: 16 entries in 256 bytes space. 262s Storage structures created in: 0.000 seconds 262s 262s Hashing NZ_GG705116.fna forwards 262s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705116.fna backwards 262s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705116.gbk forwards 262s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705116.gbk backwards 262s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Initial hashing took: 0.005 seconds 262s Extracting anchors from hash-space. 262s (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 93%. 262s Anchor extraction completed in: 0.002 seconds 262s Total anchors: 0 262s Anchor extraction + merge time: 0.002 seconds 262s Total processing time: 0.157 seconds 262s Writing anchors... 262s Total seeds used in anchors: 16 262s Hash performance: 262s Keys used: 16 out of 16 possible (100.00%). 262s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 262s Average pigeons per pigeon hole: 1 262s Writing 16 repeats...Output writing finished in: 0.001 seconds 262s Total time: 0.158 seconds 262s Murasaki finished! 262s PASSED MURASAKI 262s 262s Testing Genepare on NZ_GG705116.fna 262s 18446744073709551304 262s PASSED GENEPARSE 262s 262s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 262s Testing mbfa on NZ_GG705116.fna 262s PASSED mbfa 262s 262s Test Murasaki on NZ_GG705117.fna 262s Verbosity level is: 0 262s Writing to: output/test 262s Pattern is: 101 262s Max usable hash bits: 27 262s Hit filter is: 0 262s Hash table type is: EcoHash 262s Hashing every: 1 base 262s Histogram detail is: 0 262s Hashing function is: 3 262s Collision profiling is: disabled 262s Repeats are: unmasked 262s Mergefilter is at: 100 262s Random seed: 1710556550 (automatic) 262s Bitscore output: on 262s Leave status records: no 262s Join neighbors is: off 262s Target memory is: 1.24 GB 262s Retain members is: true 262s Store repeatmap? yes 262s Reverse complement data is generated on the fly 262s Rifts allowed: 0 262s Fuzzy Extension: yes 262s Score by minimum pair: yes 262s Gapped anchors: no 262s Large sequence support is: enabled => seqpos is 8 bytes 262s Murasaki version 1.68.6 (LARGESEQ) 262s Loading NZ_GG705117.fna 262s Read 678bp (678 bytesp) in 0.000 seconds (2.4 MBp/s) 262s Done with forward strand (678bp). Preparing reverse complement... 262s <-> Reversing metdata. 262s Done. 262s Seq NZ_GG705117.fna loaded. 678 bytes 262s Loading NZ_GG705117.gbk 262s Read 678bp (678 bytesp) in 0.000 seconds (2.5 MBp/s) 262s Done with forward strand (678bp). Preparing reverse complement... 262s <-> Reversing metdata. 262s Done. 262s Seq NZ_GG705117.gbk loaded. 678 bytes 262s Sequence loading took: 0.001 seconds 262s Forward frequencies: A:30.3835% C:19.6165% G:13.7168% T:36.2832% 262s Global base frequencies: A/T:66.6667% C/G:33.3333% 262s Pat: 3 bases long with weight 2 262s 1 101 262s Computing hash parameters... 262s Using 4 hashbits 262s 0%......... (T -0.141 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.122 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.106 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 91%........ 262s Acceptable hash function found after 1000 cycles. 262s Best uses 2/2 bases and has 0 empties from 2 inputs. 262s Score: 0.96875 (cf. worst: -4.51562) 262s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 262s Total correlation penalty: 0 262s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 262s 10 262s == 262s w[ 0]>>29: -.C 262s w[ 0]>>30: A.- 262s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 262s Ecolist (optimistic): Expcted entries per list: 8 262s Ecolist (optimistic): Minimum chunks per list: 4 262s Would take minimum 256.000000 bytes to make perfect hash. 262s Hashing 2.65 KB of sequence requires: 262s ~ linear (in seq length) hashing cost of 4.30 KB 262s ~ linear (in seq length) expected anchor cost of 63.56 KB 262s Initial hash table uses: 256 bytes (4 bits, 16 entries) 262s Expected memory usage (without anchors): 4.55 KB 262s Expected memory usage (with anchors): 68.12 KB 262s Hash parameters computed in 0.149 seconds 262s Creating storage structures: 16 entries in 256 bytes space. 262s Storage structures created in: 0.000 seconds 262s 262s Hashing NZ_GG705117.fna forwards 262s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705117.fna backwards 262s 0%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705117.gbk forwards 262s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705117.gbk backwards 262s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Initial hashing took: 0.003 seconds 262s Extracting anchors from hash-space. 262s (T -0.003 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 93%. 262s Anchor extraction completed in: 0.001 seconds 262s Total anchors: 0 262s Anchor extraction + merge time: 0.001 seconds 262s Total processing time: 0.154 seconds 262s Writing anchors... 262s Total seeds used in anchors: 16 262s Hash performance: 262s Keys used: 16 out of 16 possible (100.00%). 262s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 262s Average pigeons per pigeon hole: 1 262s Writing 16 repeats...Output writing finished in: 0.001 seconds 262s Total time: 0.155 seconds 262s Murasaki finished! 262s PASSED MURASAKI 262s 262s Testing Genepare on NZ_GG705117.fna 262s 18446744073709551295 262s PASSED GENEPARSE 262s 262s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 262s Testing mbfa on NZ_GG705117.fna 262s PASSED mbfa 262s 262s Test Murasaki on NZ_GG705118.fna 262s Verbosity level is: 0 262s Writing to: output/test 262s Pattern is: 101 262s Max usable hash bits: 27 262s Hit filter is: 0 262s Hash table type is: EcoHash 262s Hashing every: 1 base 262s Histogram detail is: 0 262s Hashing function is: 3 262s Collision profiling is: disabled 262s Repeats are: unmasked 262s Mergefilter is at: 100 262s Random seed: 1710556550 (automatic) 262s Bitscore output: on 262s Leave status records: no 262s Join neighbors is: off 262s Target memory is: 1.24 GB 262s Retain members is: true 262s Store repeatmap? yes 262s Reverse complement data is generated on the fly 262s Rifts allowed: 0 262s Fuzzy Extension: yes 262s Score by minimum pair: yes 262s Gapped anchors: no 262s Large sequence support is: enabled => seqpos is 8 bytes 262s Murasaki version 1.68.6 (LARGESEQ) 262s Loading NZ_GG705118.fna 262s Read 665bp (665 bytesp) in 0.000 seconds (2.2 MBp/s) 262s Done with forward strand (665bp). Preparing reverse complement... 262s <-> Reversing metdata. 262s Done. 262s Seq NZ_GG705118.fna loaded. 665 bytes 262s Loading NZ_GG705118.gbk 262s Read 665bp (665 bytesp) in 0.000 seconds (2.5 MBp/s) 262s Done with forward strand (665bp). Preparing reverse complement... 262s <-> Reversing metdata. 262s Done. 262s Seq NZ_GG705118.gbk loaded. 665 bytes 262s Sequence loading took: 0.001 seconds 262s Forward frequencies: A:28.7218% C:21.8045% G:23.609% T:25.8647% 262s Global base frequencies: A/T:54.5865% C/G:45.4135% 262s Pat: 3 bases long with weight 2 262s 1 101 262s Computing hash parameters... 262s Using 4 hashbits 262s 0%......... (T -0.158 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.138 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.103 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.086 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.068 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.051 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.034 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.015 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 91%........ 262s Acceptable hash function found after 1000 cycles. 262s Best uses 2/2 bases and has 0 empties from 2 inputs. 262s Score: 0.96875 (cf. worst: -4.51562) 262s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 262s Total correlation penalty: 0 262s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 262s 10 262s == 262s w[ 0]>>29: -.C 262s w[ 0]>>30: A.- 262s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 262s Ecolist (optimistic): Expcted entries per list: 8 262s Ecolist (optimistic): Minimum chunks per list: 4 262s Would take minimum 256.000000 bytes to make perfect hash. 262s Hashing 2.60 KB of sequence requires: 262s ~ linear (in seq length) hashing cost of 4.21 KB 262s ~ linear (in seq length) expected anchor cost of 62.34 KB 262s Initial hash table uses: 256 bytes (4 bits, 16 entries) 262s Expected memory usage (without anchors): 4.46 KB 262s Expected memory usage (with anchors): 66.81 KB 262s Hash parameters computed in 0.172 seconds 262s Creating storage structures: 16 entries in 256 bytes space. 262s Storage structures created in: 0.000 seconds 262s 262s Hashing NZ_GG705118.fna forwards 262s 0%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705118.fna backwards 262s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705118.gbk forwards 262s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Hashing NZ_GG705118.gbk backwards 262s 0%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 90%........ 262s Initial hashing took: 0.005 seconds 262s Extracting anchors from hash-space. 262s (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:50 2024 262s 93%. 262s Anchor extraction completed in: 0.001 seconds 262s Total anchors: 0 262s Anchor extraction + merge time: 0.001 seconds 262s Total processing time: 0.179 seconds 262s Writing anchors... 262s Total seeds used in anchors: 16 262s Hash performance: 262s Keys used: 16 out of 16 possible (100.00%). 262s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 262s Average pigeons per pigeon hole: 1 262s Writing 16 repeats...Output writing finished in: 0.001 seconds 262s Total time: 0.180 seconds 262s Murasaki finished! 262s PASSED MURASAKI 262s 262s Testing Genepare on NZ_GG705118.fna 262s 18446744073709551282 262s PASSED GENEPARSE 262s 262s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 262s Testing mbfa on NZ_GG705118.fna 262s PASSED mbfa 262s 262s Test Murasaki on NZ_GG705119.fna 262s Verbosity level is: 0 262s Writing to: output/test 262s Pattern is: 101 262s Max usable hash bits: 27 262s Hit filter is: 0 262s Hash table type is: EcoHash 262s Hashing every: 1 base 262s Histogram detail is: 0 262s Hashing function is: 3 262s Collision profiling is: disabled 262s Repeats are: unmasked 262s Mergefilter is at: 100 262s Random seed: 1710556550 (automatic) 262s Bitscore output: on 262s Leave status records: no 262s Join neighbors is: off 262s Target memory is: 1.24 GB 262s Retain members is: true 262s Store repeatmap? yes 262s Reverse complement data is generated on the fly 262s Rifts allowed: 0 262s Fuzzy Extension: yes 262s Score by minimum pair: yes 262s Gapped anchors: no 262s Large sequence support is: enabled => seqpos is 8 bytes 262s Murasaki version 1.68.6 (LARGESEQ) 262s Loading NZ_GG705119.fna 262s Read 655bp (655 bytesp) in 0.000 seconds (2.2 MBp/s) 262s Done with forward strand (655bp). Preparing reverse complement... 262s <-> Reversing metdata. 262s Done. 262s Seq NZ_GG705119.fna loaded. 655 bytes 262s Loading NZ_GG705119.gbk 262s Read 655bp (655 bytesp) in 0.000 seconds (2.5 MBp/s) 262s Done with forward strand (655bp). Preparing reverse complement... 262s <-> Reversing metdata. 262s Done. 262s Seq NZ_GG705119.gbk loaded. 655 bytes 262s Sequence loading took: 0.001 seconds 262s Forward frequencies: A:30.3817% C:21.9847% G:22.5954% T:25.0382% 262s Global base frequencies: A/T:55.4198% C/G:44.5802% 262s Pat: 3 bases long with weight 2 262s 1 101 262s Computing hash parameters... 262s Using 4 hashbits 262s 0%......... (T -0.142 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.122 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.106 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%........ 263s Acceptable hash function found after 1000 cycles. 263s Best uses 2/2 bases and has 0 empties from 2 inputs. 263s Score: 0.96875 (cf. worst: -4.51562) 263s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 263s Total correlation penalty: 0 263s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 263s 10 263s == 263s w[ 0]>>29: -.C 263s w[ 0]>>30: A.- 263s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 263s Ecolist (optimistic): Expcted entries per list: 8 263s Ecolist (optimistic): Minimum chunks per list: 4 263s Would take minimum 256.000000 bytes to make perfect hash. 263s Hashing 2.56 KB of sequence requires: 263s ~ linear (in seq length) hashing cost of 4.15 KB 263s ~ linear (in seq length) expected anchor cost of 61.41 KB 263s Initial hash table uses: 256 bytes (4 bits, 16 entries) 263s Expected memory usage (without anchors): 4.40 KB 263s Expected memory usage (with anchors): 65.81 KB 263s Hash parameters computed in 0.149 seconds 263s Creating storage structures: 16 entries in 256 bytes space. 263s Storage structures created in: 0.000 seconds 263s 263s Hashing NZ_GG705119.fna forwards 263s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 90%........ 263s Hashing NZ_GG705119.fna backwards 263s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 90%........ 263s Hashing NZ_GG705119.gbk forwards 263s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 90%........ 263s Hashing NZ_GG705119.gbk backwards 263s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 90%........ 263s Initial hashing took: 0.006 seconds 263s Extracting anchors from hash-space. 263s (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 93%. 263s Anchor extraction completed in: 0.001 seconds 263s Total anchors: 0 263s Anchor extraction + merge time: 0.001 seconds 263s Total processing time: 0.158 seconds 263s Writing anchors... 263s Total seeds used in anchors: 16 263s Hash performance: 263s Keys used: 16 out of 16 possible (100.00%). 263s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 263s Average pigeons per pigeon hole: 1 263s Writing 16 repeats...Output writing finished in: 0.001 seconds 263s Total time: 0.159 seconds 263s Murasaki finished! 263s PASSED MURASAKI 263s 263s Testing Genepare on NZ_GG705119.fna 263s 18446744073709551272 263s PASSED GENEPARSE 263s 263s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 263s Testing mbfa on NZ_GG705119.fna 263s PASSED mbfa 263s 263s Test Murasaki on NZ_GG705120.fna 263s Verbosity level is: 0 263s Writing to: output/test 263s Pattern is: 101 263s Max usable hash bits: 27 263s Hit filter is: 0 263s Hash table type is: EcoHash 263s Hashing every: 1 base 263s Histogram detail is: 0 263s Hashing function is: 3 263s Collision profiling is: disabled 263s Repeats are: unmasked 263s Mergefilter is at: 100 263s Random seed: 1710556551 (automatic) 263s Bitscore output: on 263s Leave status records: no 263s Join neighbors is: off 263s Target memory is: 1.24 GB 263s Retain members is: true 263s Store repeatmap? yes 263s Reverse complement data is generated on the fly 263s Rifts allowed: 0 263s Fuzzy Extension: yes 263s Score by minimum pair: yes 263s Gapped anchors: no 263s Large sequence support is: enabled => seqpos is 8 bytes 263s Murasaki version 1.68.6 (LARGESEQ) 263s Loading NZ_GG705120.fna 263s Read 638bp (638 bytesp) in 0.000 seconds (2.0 MBp/s) 263s Done with forward strand (638bp). Preparing reverse complement... 263s <-> Reversing metdata. 263s Done. 263s Seq NZ_GG705120.fna loaded. 638 bytes 263s Loading NZ_GG705120.gbk 263s Read 638bp (638 bytesp) in 0.000 seconds (2.4 MBp/s) 263s Done with forward strand (638bp). Preparing reverse complement... 263s <-> Reversing metdata. 263s Done. 263s Seq NZ_GG705120.gbk loaded. 638 bytes 263s Sequence loading took: 0.001 seconds 263s Forward frequencies: A:23.511% C:22.7273% G:24.9216% T:28.8401% 263s Global base frequencies: A/T:52.3511% C/G:47.6489% 263s Pat: 3 bases long with weight 2 263s 1 101 263s Computing hash parameters... 263s Using 4 hashbits 263s 0%......... (T -0.142 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.121 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.104 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%........ 263s Acceptable hash function found after 1000 cycles. 263s Best uses 2/2 bases and has 0 empties from 2 inputs. 263s Score: 0.96875 (cf. worst: -4.51562) 263s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 263s Total correlation penalty: 0 263s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 263s 10 263s == 263s w[ 0]>>29: -.C 263s w[ 0]>>30: A.- 263s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 263s Ecolist (optimistic): Expcted entries per list: 8 263s Ecolist (optimistic): Minimum chunks per list: 4 263s Would take minimum 256.000000 bytes to make perfect hash. 263s Hashing 2.49 KB of sequence requires: 263s ~ linear (in seq length) hashing cost of 4.05 KB 263s ~ linear (in seq length) expected anchor cost of 59.81 KB 263s Initial hash table uses: 256 bytes (4 bits, 16 entries) 263s Expected memory usage (without anchors): 4.30 KB 263s Expected memory usage (with anchors): 64.11 KB 263s Hash parameters computed in 0.148 seconds 263s Creating storage structures: 16 entries in 256 bytes space. 263s Storage structures created in: 0.000 seconds 263s 263s Hashing NZ_GG705120.fna forwards 263s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.006 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 90%........ 263s Hashing NZ_GG705120.fna backwards 263s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 90%........ 263s Hashing NZ_GG705120.gbk forwards 263s 0%......... (T -0.005 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 90%........ 263s Hashing NZ_GG705120.gbk backwards 263s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 90%........ 263s Initial hashing took: 0.004 seconds 263s Extracting anchors from hash-space. 263s (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 93%. 263s Anchor extraction completed in: 0.001 seconds 263s Total anchors: 0 263s Anchor extraction + merge time: 0.001 seconds 263s Total processing time: 0.155 seconds 263s Writing anchors... 263s Total seeds used in anchors: 16 263s Hash performance: 263s Keys used: 16 out of 16 possible (100.00%). 263s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 263s Average pigeons per pigeon hole: 1 263s Writing 16 repeats...Output writing finished in: 0.001 seconds 263s Total time: 0.156 seconds 263s Murasaki finished! 263s PASSED MURASAKI 263s 263s Testing Genepare on NZ_GG705120.fna 263s 18446744073709551255 263s PASSED GENEPARSE 263s 263s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 263s Testing mbfa on NZ_GG705120.fna 263s PASSED mbfa 263s 263s Test Murasaki on NZ_GG705121.fna 263s Verbosity level is: 0 263s Writing to: output/test 263s Pattern is: 101 263s Max usable hash bits: 27 263s Hit filter is: 0 263s Hash table type is: EcoHash 263s Hashing every: 1 base 263s Histogram detail is: 0 263s Hashing function is: 3 263s Collision profiling is: disabled 263s Repeats are: unmasked 263s Mergefilter is at: 100 263s Random seed: 1710556551 (automatic) 263s Bitscore output: on 263s Leave status records: no 263s Join neighbors is: off 263s Target memory is: 1.24 GB 263s Retain members is: true 263s Store repeatmap? yes 263s Reverse complement data is generated on the fly 263s Rifts allowed: 0 263s Fuzzy Extension: yes 263s Score by minimum pair: yes 263s Gapped anchors: no 263s Large sequence support is: enabled => seqpos is 8 bytes 263s Murasaki version 1.68.6 (LARGESEQ) 263s Loading NZ_GG705121.fna 263s Read 615bp (615 bytesp) in 0.000 seconds (2.2 MBp/s) 263s Done with forward strand (615bp). Preparing reverse complement... 263s <-> Reversing metdata. 263s Done. 263s Seq NZ_GG705121.fna loaded. 615 bytes 263s Loading NZ_GG705121.gbk 263s Read 615bp (615 bytesp) in 0.000 seconds (2.0 MBp/s) 263s Done with forward strand (615bp). Preparing reverse complement... 263s <-> Reversing metdata. 263s Done. 263s Seq NZ_GG705121.gbk loaded. 615 bytes 263s Sequence loading took: 0.001 seconds 263s Forward frequencies: A:33.8211% C:18.374% G:17.8862% T:29.9187% 263s Global base frequencies: A/T:63.7398% C/G:36.2602% 263s Pat: 3 bases long with weight 2 263s 1 101 263s Computing hash parameters... 263s Using 4 hashbits 263s 0%......... (T -0.141 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.121 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.104 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%........ 263s Acceptable hash function found after 1000 cycles. 263s Best uses 2/2 bases and has 0 empties from 2 inputs. 263s Score: 0.96875 (cf. worst: -4.51562) 263s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 263s Total correlation penalty: 0 263s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 263s 10 263s == 263s w[ 0]>>29: -.C 263s w[ 0]>>30: A.- 263s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 263s Ecolist (optimistic): Expcted entries per list: 8 263s Ecolist (optimistic): Minimum chunks per list: 4 263s Would take minimum 256.000000 bytes to make perfect hash. 263s Hashing 2.40 KB of sequence requires: 263s ~ linear (in seq length) hashing cost of 3.90 KB 263s ~ linear (in seq length) expected anchor cost of 57.66 KB 263s Initial hash table uses: 256 bytes (4 bits, 16 entries) 263s Expected memory usage (without anchors): 4.15 KB 263s Expected memory usage (with anchors): 61.80 KB 263s Hash parameters computed in 0.148 seconds 263s Creating storage structures: 16 entries in 256 bytes space. 263s Storage structures created in: 0.000 seconds 263s 263s Hashing NZ_GG705121.fna forwards 263s 0%........ (T -0.003 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.003 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Hashing NZ_GG705121.fna backwards 263s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Hashing NZ_GG705121.gbk forwards 263s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Hashing NZ_GG705121.gbk backwards 263s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Initial hashing took: 0.005 seconds 263s Extracting anchors from hash-space. 263s (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 56%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 93%. 263s Anchor extraction completed in: 0.002 seconds 263s Total anchors: 0 263s Anchor extraction + merge time: 0.002 seconds 263s Total processing time: 0.156 seconds 263s Writing anchors... 263s Total seeds used in anchors: 16 263s Hash performance: 263s Keys used: 16 out of 16 possible (100.00%). 263s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 263s Average pigeons per pigeon hole: 1 263s Writing 16 repeats...Output writing finished in: 0.001 seconds 263s Total time: 0.157 seconds 263s Murasaki finished! 263s PASSED MURASAKI 263s 263s Testing Genepare on NZ_GG705121.fna 263s 18446744073709551232 263s PASSED GENEPARSE 263s 263s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 263s Testing mbfa on NZ_GG705121.fna 263s PASSED mbfa 263s 263s Test Murasaki on NZ_GG705122.fna 263s Verbosity level is: 0 263s Writing to: output/test 263s Pattern is: 101 263s Max usable hash bits: 27 263s Hit filter is: 0 263s Hash table type is: EcoHash 263s Hashing every: 1 base 263s Histogram detail is: 0 263s Hashing function is: 3 263s Collision profiling is: disabled 263s Repeats are: unmasked 263s Mergefilter is at: 100 263s Random seed: 1710556551 (automatic) 263s Bitscore output: on 263s Leave status records: no 263s Join neighbors is: off 263s Target memory is: 1.24 GB 263s Retain members is: true 263s Store repeatmap? yes 263s Reverse complement data is generated on the fly 263s Rifts allowed: 0 263s Fuzzy Extension: yes 263s Score by minimum pair: yes 263s Gapped anchors: no 263s Large sequence support is: enabled => seqpos is 8 bytes 263s Murasaki version 1.68.6 (LARGESEQ) 263s Loading NZ_GG705122.fna 263s Read 603bp (603 bytesp) in 0.000 seconds (2.1 MBp/s) 263s Done with forward strand (603bp). Preparing reverse complement... 263s <-> Reversing metdata. 263s Done. 263s Seq NZ_GG705122.fna loaded. 603 bytes 263s Loading NZ_GG705122.gbk 263s Read 603bp (603 bytesp) in 0.000 seconds (2.3 MBp/s) 263s Done with forward strand (603bp). Preparing reverse complement... 263s <-> Reversing metdata. 263s Done. 263s Seq NZ_GG705122.gbk loaded. 603 bytes 263s Sequence loading took: 0.001 seconds 263s Forward frequencies: A:30.8458% C:18.2421% G:20.8955% T:30.0166% 263s Global base frequencies: A/T:60.8624% C/G:39.1376% 263s Pat: 3 bases long with weight 2 263s 1 101 263s Computing hash parameters... 263s Using 4 hashbits 263s 0%......... (T -0.139 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.120 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.104 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.088 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.029 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%........ 263s Acceptable hash function found after 1000 cycles. 263s Best uses 2/2 bases and has 0 empties from 2 inputs. 263s Score: 0.96875 (cf. worst: -4.51562) 263s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 263s Total correlation penalty: 0 263s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 263s 10 263s == 263s w[ 0]>>29: -.C 263s w[ 0]>>30: A.- 263s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 263s Ecolist (optimistic): Expcted entries per list: 8 263s Ecolist (optimistic): Minimum chunks per list: 4 263s Would take minimum 256.000000 bytes to make perfect hash. 263s Hashing 2.36 KB of sequence requires: 263s ~ linear (in seq length) hashing cost of 3.82 KB 263s ~ linear (in seq length) expected anchor cost of 56.53 KB 263s Initial hash table uses: 256 bytes (4 bits, 16 entries) 263s Expected memory usage (without anchors): 4.07 KB 263s Expected memory usage (with anchors): 60.60 KB 263s Hash parameters computed in 0.147 seconds 263s Creating storage structures: 16 entries in 256 bytes space. 263s Storage structures created in: 0.000 seconds 263s 263s Hashing NZ_GG705122.fna forwards 263s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Hashing NZ_GG705122.fna backwards 263s 0%........ (T -0.006 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.003 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Hashing NZ_GG705122.gbk forwards 263s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Hashing NZ_GG705122.gbk backwards 263s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Initial hashing took: 0.004 seconds 263s Extracting anchors from hash-space. 263s (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 93%. 263s Anchor extraction completed in: 0.001 seconds 263s Total anchors: 0 263s Anchor extraction + merge time: 0.001 seconds 263s Total processing time: 0.153 seconds 263s Writing anchors... 263s Total seeds used in anchors: 16 263s Hash performance: 263s Keys used: 16 out of 16 possible (100.00%). 263s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 263s Average pigeons per pigeon hole: 1 263s Writing 16 repeats...Output writing finished in: 0.001 seconds 263s Total time: 0.154 seconds 263s Murasaki finished! 263s PASSED MURASAKI 263s 263s Testing Genepare on NZ_GG705122.fna 263s 18446744073709551220 263s PASSED GENEPARSE 263s 263s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 263s Testing mbfa on NZ_GG705122.fna 263s PASSED mbfa 263s 263s Test Murasaki on NZ_GG705123.fna 263s Verbosity level is: 0 263s Writing to: output/test 263s Pattern is: 101 263s Max usable hash bits: 27 263s Hit filter is: 0 263s Hash table type is: EcoHash 263s Hashing every: 1 base 263s Histogram detail is: 0 263s Hashing function is: 3 263s Collision profiling is: disabled 263s Repeats are: unmasked 263s Mergefilter is at: 100 263s Random seed: 1710556551 (automatic) 263s Bitscore output: on 263s Leave status records: no 263s Join neighbors is: off 263s Target memory is: 1.24 GB 263s Retain members is: true 263s Store repeatmap? yes 263s Reverse complement data is generated on the fly 263s Rifts allowed: 0 263s Fuzzy Extension: yes 263s Score by minimum pair: yes 263s Gapped anchors: no 263s Large sequence support is: enabled => seqpos is 8 bytes 263s Murasaki version 1.68.6 (LARGESEQ) 263s Loading NZ_GG705123.fna 263s Read 603bp (603 bytesp) in 0.000 seconds (2.1 MBp/s) 263s Done with forward strand (603bp). Preparing reverse complement... 263s <-> Reversing metdata. 263s Done. 263s Seq NZ_GG705123.fna loaded. 603 bytes 263s Loading NZ_GG705123.gbk 263s Read 603bp (603 bytesp) in 0.000 seconds (2.3 MBp/s) 263s Done with forward strand (603bp). Preparing reverse complement... 263s <-> Reversing metdata. 263s Done. 263s Seq NZ_GG705123.gbk loaded. 603 bytes 263s Sequence loading took: 0.001 seconds 263s Forward frequencies: A:30.6799% C:18.0763% G:20.5638% T:30.6799% 263s Global base frequencies: A/T:61.3599% C/G:38.6401% 263s Pat: 3 bases long with weight 2 263s 1 101 263s Computing hash parameters... 263s Using 4 hashbits 263s 0%......... (T -0.140 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%......... (T -0.121 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%......... (T -0.104 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%......... (T -0.059 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 70%......... (T -0.031 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 80%......... (T -0.014 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%........ 263s Acceptable hash function found after 1000 cycles. 263s Best uses 2/2 bases and has 0 empties from 2 inputs. 263s Score: 0.96875 (cf. worst: -4.51562) 263s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 263s Total correlation penalty: 0 263s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 263s 10 263s == 263s w[ 0]>>29: -.C 263s w[ 0]>>30: A.- 263s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 263s Ecolist (optimistic): Expcted entries per list: 8 263s Ecolist (optimistic): Minimum chunks per list: 4 263s Would take minimum 256.000000 bytes to make perfect hash. 263s Hashing 2.36 KB of sequence requires: 263s ~ linear (in seq length) hashing cost of 3.82 KB 263s ~ linear (in seq length) expected anchor cost of 56.53 KB 263s Initial hash table uses: 256 bytes (4 bits, 16 entries) 263s Expected memory usage (without anchors): 4.07 KB 263s Expected memory usage (with anchors): 60.60 KB 263s Hash parameters computed in 0.155 seconds 263s Creating storage structures: 16 entries in 256 bytes space. 263s Storage structures created in: 0.000 seconds 263s 263s Hashing NZ_GG705123.fna forwards 263s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Hashing NZ_GG705123.fna backwards 263s 0%........ (T -0.006 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.003 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Hashing NZ_GG705123.gbk forwards 263s 0%........ (T -0.006 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.003 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Hashing NZ_GG705123.gbk backwards 263s 0%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 10%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 20%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 91%....... 263s Initial hashing took: 0.004 seconds 263s Extracting anchors from hash-space. 263s (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:51 2024 263s 93%. 263s Anchor extraction completed in: 0.001 seconds 263s Total anchors: 0 263s Anchor extraction + merge time: 0.001 seconds 263s Total processing time: 0.160 seconds 263s Writing anchors... 263s Total seeds used in anchors: 16 263s Hash performance: 263s Keys used: 16 out of 16 possible (100.00%). 263s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 263s Average pigeons per pigeon hole: 1 263s Writing 16 repeats...Output writing finished in: 0.001 seconds 263s Total time: 0.161 seconds 263s Murasaki finished! 263s PASSED MURASAKI 263s 263s Testing Genepare on NZ_GG705123.fna 263s 18446744073709551220 263s PASSED GENEPARSE 263s 263s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 263s Testing mbfa on NZ_GG705123.fna 263s PASSED mbfa 263s 263s Test Murasaki on NZ_GG705124.fna 264s Verbosity level is: 0 264s Writing to: output/test 264s Pattern is: 101 264s Max usable hash bits: 27 264s Hit filter is: 0 264s Hash table type is: EcoHash 264s Hashing every: 1 base 264s Histogram detail is: 0 264s Hashing function is: 3 264s Collision profiling is: disabled 264s Repeats are: unmasked 264s Mergefilter is at: 100 264s Random seed: 1710556551 (automatic) 264s Bitscore output: on 264s Leave status records: no 264s Join neighbors is: off 264s Target memory is: 1.24 GB 264s Retain members is: true 264s Store repeatmap? yes 264s Reverse complement data is generated on the fly 264s Rifts allowed: 0 264s Fuzzy Extension: yes 264s Score by minimum pair: yes 264s Gapped anchors: no 264s Large sequence support is: enabled => seqpos is 8 bytes 264s Murasaki version 1.68.6 (LARGESEQ) 264s Loading NZ_GG705124.fna 264s Read 597bp (597 bytesp) in 0.000 seconds (2.0 MBp/s) 264s Done with forward strand (597bp). Preparing reverse complement... 264s <-> Reversing metdata. 264s Done. 264s Seq NZ_GG705124.fna loaded. 597 bytes 264s Loading NZ_GG705124.gbk 264s Read 597bp (597 bytesp) in 0.000 seconds (2.3 MBp/s) 264s Done with forward strand (597bp). Preparing reverse complement... 264s <-> Reversing metdata. 264s Done. 264s Seq NZ_GG705124.gbk loaded. 597 bytes 264s Sequence loading took: 0.001 seconds 264s Forward frequencies: A:38.6935% C:10.8878% G:20.268% T:30.1508% 264s Global base frequencies: A/T:68.8442% C/G:31.1558% 264s Pat: 3 bases long with weight 2 264s 1 101 264s Computing hash parameters... 264s Using 4 hashbits 264s 0%......... (T -0.142 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.122 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.074 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 91%........ 264s Acceptable hash function found after 1000 cycles. 264s Best uses 2/2 bases and has 0 empties from 2 inputs. 264s Score: 0.96875 (cf. worst: -4.51562) 264s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 264s Total correlation penalty: 0 264s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 264s 10 264s == 264s w[ 0]>>29: -.C 264s w[ 0]>>30: A.- 264s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 264s Ecolist (optimistic): Expcted entries per list: 8 264s Ecolist (optimistic): Minimum chunks per list: 4 264s Would take minimum 256.000000 bytes to make perfect hash. 264s Hashing 2.33 KB of sequence requires: 264s ~ linear (in seq length) hashing cost of 3.78 KB 264s ~ linear (in seq length) expected anchor cost of 55.97 KB 264s Initial hash table uses: 256 bytes (4 bits, 16 entries) 264s Expected memory usage (without anchors): 4.03 KB 264s Expected memory usage (with anchors): 60.00 KB 264s Hash parameters computed in 0.148 seconds 264s Creating storage structures: 16 entries in 256 bytes space. 264s Storage structures created in: 0.000 seconds 264s 264s Hashing NZ_GG705124.fna forwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705124.fna backwards 264s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.004 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705124.gbk forwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705124.gbk backwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Initial hashing took: 0.004 seconds 264s Extracting anchors from hash-space. 264s (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 93%. 264s Anchor extraction completed in: 0.001 seconds 264s Total anchors: 0 264s Anchor extraction + merge time: 0.001 seconds 264s Total processing time: 0.154 seconds 264s Writing anchors... 264s Total seeds used in anchors: 16 264s Hash performance: 264s Keys used: 16 out of 16 possible (100.00%). 264s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 264s Average pigeons per pigeon hole: 1 264s Writing 16 repeats...Output writing finished in: 0.001 seconds 264s Total time: 0.155 seconds 264s Murasaki finished! 264s PASSED MURASAKI 264s 264s Testing Genepare on NZ_GG705124.fna 264s 18446744073709551214 264s PASSED GENEPARSE 264s 264s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 264s Testing mbfa on NZ_GG705124.fna 264s PASSED mbfa 264s 264s Test Murasaki on NZ_GG705125.fna 264s Verbosity level is: 0 264s Writing to: output/test 264s Pattern is: 101 264s Max usable hash bits: 27 264s Hit filter is: 0 264s Hash table type is: EcoHash 264s Hashing every: 1 base 264s Histogram detail is: 0 264s Hashing function is: 3 264s Collision profiling is: disabled 264s Repeats are: unmasked 264s Mergefilter is at: 100 264s Random seed: 1710556552 (automatic) 264s Bitscore output: on 264s Leave status records: no 264s Join neighbors is: off 264s Target memory is: 1.24 GB 264s Retain members is: true 264s Store repeatmap? yes 264s Reverse complement data is generated on the fly 264s Rifts allowed: 0 264s Fuzzy Extension: yes 264s Score by minimum pair: yes 264s Gapped anchors: no 264s Large sequence support is: enabled => seqpos is 8 bytes 264s Murasaki version 1.68.6 (LARGESEQ) 264s Loading NZ_GG705125.fna 264s Read 583bp (583 bytesp) in 0.000 seconds (2.1 MBp/s) 264s Done with forward strand (583bp). Preparing reverse complement... 264s <-> Reversing metdata. 264s Done. 264s Seq NZ_GG705125.fna loaded. 583 bytes 264s Loading NZ_GG705125.gbk 264s Read 583bp (583 bytesp) in 0.000 seconds (2.0 MBp/s) 264s Done with forward strand (583bp). Preparing reverse complement... 264s <-> Reversing metdata. 264s Done. 264s Seq NZ_GG705125.gbk loaded. 583 bytes 264s Sequence loading took: 0.001 seconds 264s Forward frequencies: A:27.7873% C:20.5832% G:18.8679% T:32.7616% 264s Global base frequencies: A/T:60.5489% C/G:39.4511% 264s Pat: 3 bases long with weight 2 264s 1 101 264s Computing hash parameters... 264s Using 4 hashbits 264s 0%......... (T -0.139 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.122 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 91%........ 264s Acceptable hash function found after 1000 cycles. 264s Best uses 2/2 bases and has 0 empties from 2 inputs. 264s Score: 0.96875 (cf. worst: -4.51562) 264s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 264s Total correlation penalty: 0 264s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 264s 10 264s == 264s w[ 0]>>29: -.C 264s w[ 0]>>30: A.- 264s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 264s Ecolist (optimistic): Expcted entries per list: 8 264s Ecolist (optimistic): Minimum chunks per list: 4 264s Would take minimum 256.000000 bytes to make perfect hash. 264s Hashing 2.28 KB of sequence requires: 264s ~ linear (in seq length) hashing cost of 3.69 KB 264s ~ linear (in seq length) expected anchor cost of 54.66 KB 264s Initial hash table uses: 256 bytes (4 bits, 16 entries) 264s Expected memory usage (without anchors): 3.94 KB 264s Expected memory usage (with anchors): 58.60 KB 264s Hash parameters computed in 0.148 seconds 264s Creating storage structures: 16 entries in 256 bytes space. 264s Storage structures created in: 0.000 seconds 264s 264s Hashing NZ_GG705125.fna forwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 71%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 91%........ 264s Hashing NZ_GG705125.fna backwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 71%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 91%........ 264s Hashing NZ_GG705125.gbk forwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 71%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 91%........ 264s Hashing NZ_GG705125.gbk backwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 71%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 81%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 91%........ 264s Initial hashing took: 0.004 seconds 264s Extracting anchors from hash-space. 264s (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 93%. 264s Anchor extraction completed in: 0.001 seconds 264s Total anchors: 0 264s Anchor extraction + merge time: 0.001 seconds 264s Total processing time: 0.154 seconds 264s Writing anchors... 264s Total seeds used in anchors: 16 264s Hash performance: 264s Keys used: 16 out of 16 possible (100.00%). 264s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 264s Average pigeons per pigeon hole: 1 264s Writing 16 repeats...Output writing finished in: 0.001 seconds 264s Total time: 0.155 seconds 264s Murasaki finished! 264s PASSED MURASAKI 264s 264s Testing Genepare on NZ_GG705125.fna 264s 18446744073709551200 264s PASSED GENEPARSE 264s 264s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 264s Testing mbfa on NZ_GG705125.fna 264s PASSED mbfa 264s 264s Test Murasaki on NZ_GG705126.fna 264s Verbosity level is: 0 264s Writing to: output/test 264s Pattern is: 101 264s Max usable hash bits: 27 264s Hit filter is: 0 264s Hash table type is: EcoHash 264s Hashing every: 1 base 264s Histogram detail is: 0 264s Hashing function is: 3 264s Collision profiling is: disabled 264s Repeats are: unmasked 264s Mergefilter is at: 100 264s Random seed: 1710556552 (automatic) 264s Bitscore output: on 264s Leave status records: no 264s Join neighbors is: off 264s Target memory is: 1.24 GB 264s Retain members is: true 264s Store repeatmap? yes 264s Reverse complement data is generated on the fly 264s Rifts allowed: 0 264s Fuzzy Extension: yes 264s Score by minimum pair: yes 264s Gapped anchors: no 264s Large sequence support is: enabled => seqpos is 8 bytes 264s Murasaki version 1.68.6 (LARGESEQ) 264s Loading NZ_GG705126.fna 264s Read 559bp (559 bytesp) in 0.000 seconds (1.9 MBp/s) 264s Done with forward strand (559bp). Preparing reverse complement... 264s <-> Reversing metdata. 264s Done. 264s Seq NZ_GG705126.fna loaded. 559 bytes 264s Loading NZ_GG705126.gbk 264s Read 559bp (559 bytesp) in 0.000 seconds (2.2 MBp/s) 264s Done with forward strand (559bp). Preparing reverse complement... 264s <-> Reversing metdata. 264s Done. 264s Seq NZ_GG705126.gbk loaded. 559 bytes 264s Sequence loading took: 0.001 seconds 264s Forward frequencies: A:37.3882% C:13.9535% G:15.2057% T:33.4526% 264s Global base frequencies: A/T:70.8408% C/G:29.1592% 264s Pat: 3 bases long with weight 2 264s 1 101 264s Computing hash parameters... 264s Using 4 hashbits 264s 0%......... (T -0.138 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.121 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.044 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 91%........ 264s Acceptable hash function found after 1000 cycles. 264s Best uses 2/2 bases and has 0 empties from 2 inputs. 264s Score: 0.96875 (cf. worst: -4.51562) 264s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 264s Total correlation penalty: 0 264s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 264s 10 264s == 264s w[ 0]>>29: -.C 264s w[ 0]>>30: A.- 264s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 264s Ecolist (optimistic): Expcted entries per list: 8 264s Ecolist (optimistic): Minimum chunks per list: 4 264s Would take minimum 256.000000 bytes to make perfect hash. 264s Hashing 2.18 KB of sequence requires: 264s ~ linear (in seq length) hashing cost of 3.54 KB 264s ~ linear (in seq length) expected anchor cost of 52.41 KB 264s Initial hash table uses: 256 bytes (4 bits, 16 entries) 264s Expected memory usage (without anchors): 3.79 KB 264s Expected memory usage (with anchors): 56.20 KB 264s Hash parameters computed in 0.148 seconds 264s Creating storage structures: 16 entries in 256 bytes space. 264s Storage structures created in: 0.000 seconds 264s 264s Hashing NZ_GG705126.fna forwards 264s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705126.fna backwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705126.gbk forwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705126.gbk backwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Initial hashing took: 0.004 seconds 264s Extracting anchors from hash-space. 264s (T -0.003 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 93%. 264s Anchor extraction completed in: 0.001 seconds 264s Total anchors: 0 264s Anchor extraction + merge time: 0.001 seconds 264s Total processing time: 0.154 seconds 264s Writing anchors... 264s Total seeds used in anchors: 16 264s Hash performance: 264s Keys used: 16 out of 16 possible (100.00%). 264s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 264s Average pigeons per pigeon hole: 1 264s Writing 16 repeats...Output writing finished in: 0.001 seconds 264s Total time: 0.155 seconds 264s Murasaki finished! 264s PASSED MURASAKI 264s 264s Testing Genepare on NZ_GG705126.fna 264s 18446744073709551176 264s PASSED GENEPARSE 264s 264s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 264s Testing mbfa on NZ_GG705126.fna 264s PASSED mbfa 264s 264s Test Murasaki on NZ_GG705127.fna 264s Verbosity level is: 0 264s Writing to: output/test 264s Pattern is: 101 264s Max usable hash bits: 27 264s Hit filter is: 0 264s Hash table type is: EcoHash 264s Hashing every: 1 base 264s Histogram detail is: 0 264s Hashing function is: 3 264s Collision profiling is: disabled 264s Repeats are: unmasked 264s Mergefilter is at: 100 264s Random seed: 1710556552 (automatic) 264s Bitscore output: on 264s Leave status records: no 264s Join neighbors is: off 264s Target memory is: 1.24 GB 264s Retain members is: true 264s Store repeatmap? yes 264s Reverse complement data is generated on the fly 264s Rifts allowed: 0 264s Fuzzy Extension: yes 264s Score by minimum pair: yes 264s Gapped anchors: no 264s Large sequence support is: enabled => seqpos is 8 bytes 264s Murasaki version 1.68.6 (LARGESEQ) 264s Loading NZ_GG705127.fna 264s Read 549bp (549 bytesp) in 0.000 seconds (2.0 MBp/s) 264s Done with forward strand (549bp). Preparing reverse complement... 264s <-> Reversing metdata. 264s Done. 264s Seq NZ_GG705127.fna loaded. 549 bytes 264s Loading NZ_GG705127.gbk 264s Read 549bp (549 bytesp) in 0.000 seconds (2.1 MBp/s) 264s Done with forward strand (549bp). Preparing reverse complement... 264s <-> Reversing metdata. 264s Done. 264s Seq NZ_GG705127.gbk loaded. 549 bytes 264s Sequence loading took: 0.001 seconds 264s Forward frequencies: A:32.969% C:20.4007% G:20.765% T:25.8652% 264s Global base frequencies: A/T:58.8342% C/G:41.1658% 264s Pat: 3 bases long with weight 2 264s 1 101 264s Computing hash parameters... 264s Using 4 hashbits 264s 0%......... (T -0.143 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.123 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 91%........ 264s Acceptable hash function found after 1000 cycles. 264s Best uses 2/2 bases and has 0 empties from 2 inputs. 264s Score: 0.96875 (cf. worst: -4.51562) 264s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 264s Total correlation penalty: 0 264s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 264s 10 264s == 264s w[ 0]>>29: -.C 264s w[ 0]>>30: A.- 264s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 264s Ecolist (optimistic): Expcted entries per list: 8 264s Ecolist (optimistic): Minimum chunks per list: 4 264s Would take minimum 256.000000 bytes to make perfect hash. 264s Hashing 2.14 KB of sequence requires: 264s ~ linear (in seq length) hashing cost of 3.48 KB 264s ~ linear (in seq length) expected anchor cost of 51.47 KB 264s Initial hash table uses: 256 bytes (4 bits, 16 entries) 264s Expected memory usage (without anchors): 3.73 KB 264s Expected memory usage (with anchors): 55.20 KB 264s Hash parameters computed in 0.148 seconds 264s Creating storage structures: 16 entries in 256 bytes space. 264s Storage structures created in: 0.000 seconds 264s 264s Hashing NZ_GG705127.fna forwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705127.fna backwards 264s 0%......... (T -0.007 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.003 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705127.gbk forwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705127.gbk backwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Initial hashing took: 0.003 seconds 264s Extracting anchors from hash-space. 264s (T -0.002 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 93%. 264s Anchor extraction completed in: 0.001 seconds 264s Total anchors: 0 264s Anchor extraction + merge time: 0.001 seconds 264s Total processing time: 0.153 seconds 264s Writing anchors... 264s Total seeds used in anchors: 16 264s Hash performance: 264s Keys used: 16 out of 16 possible (100.00%). 264s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 264s Average pigeons per pigeon hole: 1 264s Writing 16 repeats...Output writing finished in: 0.001 seconds 264s Total time: 0.154 seconds 264s Murasaki finished! 264s PASSED MURASAKI 264s 264s Testing Genepare on NZ_GG705127.fna 264s 18446744073709551166 264s PASSED GENEPARSE 264s 264s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 264s Testing mbfa on NZ_GG705127.fna 264s PASSED mbfa 264s 264s Test Murasaki on NZ_GG705128.fna 264s Verbosity level is: 0 264s Writing to: output/test 264s Pattern is: 101 264s Max usable hash bits: 27 264s Hit filter is: 0 264s Hash table type is: EcoHash 264s Hashing every: 1 base 264s Histogram detail is: 0 264s Hashing function is: 3 264s Collision profiling is: disabled 264s Repeats are: unmasked 264s Mergefilter is at: 100 264s Random seed: 1710556552 (automatic) 264s Bitscore output: on 264s Leave status records: no 264s Join neighbors is: off 264s Target memory is: 1.24 GB 264s Retain members is: true 264s Store repeatmap? yes 264s Reverse complement data is generated on the fly 264s Rifts allowed: 0 264s Fuzzy Extension: yes 264s Score by minimum pair: yes 264s Gapped anchors: no 264s Large sequence support is: enabled => seqpos is 8 bytes 264s Murasaki version 1.68.6 (LARGESEQ) 264s Loading NZ_GG705128.fna 264s Read 548bp (548 bytesp) in 0.000 seconds (1.9 MBp/s) 264s Done with forward strand (548bp). Preparing reverse complement... 264s <-> Reversing metdata. 264s Done. 264s Seq NZ_GG705128.fna loaded. 548 bytes 264s Loading NZ_GG705128.gbk 264s Read 548bp (548 bytesp) in 0.000 seconds (1.2 MBp/s) 264s Done with forward strand (548bp). Preparing reverse complement... 264s <-> Reversing metdata. 264s Done. 264s Seq NZ_GG705128.gbk loaded. 548 bytes 264s Sequence loading took: 0.001 seconds 264s Forward frequencies: A:31.9343% C:19.5255% G:21.7153% T:26.8248% 264s Global base frequencies: A/T:58.7591% C/G:41.2409% 264s Pat: 3 bases long with weight 2 264s 1 101 264s Computing hash parameters... 264s Using 4 hashbits 264s 0%......... (T -0.139 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.121 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.090 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 91%........ 264s Acceptable hash function found after 1000 cycles. 264s Best uses 2/2 bases and has 0 empties from 2 inputs. 264s Score: 0.96875 (cf. worst: -4.51562) 264s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 264s Total correlation penalty: 0 264s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 264s 10 264s == 264s w[ 0]>>29: -.C 264s w[ 0]>>30: A.- 264s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 264s Ecolist (optimistic): Expcted entries per list: 8 264s Ecolist (optimistic): Minimum chunks per list: 4 264s Would take minimum 256.000000 bytes to make perfect hash. 264s Hashing 2.14 KB of sequence requires: 264s ~ linear (in seq length) hashing cost of 3.48 KB 264s ~ linear (in seq length) expected anchor cost of 51.38 KB 264s Initial hash table uses: 256 bytes (4 bits, 16 entries) 264s Expected memory usage (without anchors): 3.73 KB 264s Expected memory usage (with anchors): 55.10 KB 264s Hash parameters computed in 0.148 seconds 264s Creating storage structures: 16 entries in 256 bytes space. 264s Storage structures created in: 0.000 seconds 264s 264s Hashing NZ_GG705128.fna forwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705128.fna backwards 264s 0%......... (T -0.002 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705128.gbk forwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Hashing NZ_GG705128.gbk backwards 264s 0%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 10%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 20%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 30%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 40%......... (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 50%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 60%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 70%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 80%......... (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 90%........ 264s Initial hashing took: 0.003 seconds 264s Extracting anchors from hash-space. 264s (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:52 2024 264s 93%. 264s Anchor extraction completed in: 0.001 seconds 264s Total anchors: 0 264s Anchor extraction + merge time: 0.001 seconds 264s Total processing time: 0.154 seconds 264s Writing anchors... 264s Total seeds used in anchors: 16 264s Hash performance: 264s Keys used: 16 out of 16 possible (100.00%). 264s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 264s Average pigeons per pigeon hole: 1 264s Writing 16 repeats...Output writing finished in: 0.001 seconds 264s Total time: 0.155 seconds 264s Murasaki finished! 264s PASSED MURASAKI 264s 264s Testing Genepare on NZ_GG705128.fna 264s 18446744073709551165 264s PASSED GENEPARSE 264s 265s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 265s Testing mbfa on NZ_GG705128.fna 265s PASSED mbfa 265s 265s Test Murasaki on NZ_GG705129.fna 265s Verbosity level is: 0 265s Writing to: output/test 265s Pattern is: 101 265s Max usable hash bits: 27 265s Hit filter is: 0 265s Hash table type is: EcoHash 265s Hashing every: 1 base 265s Histogram detail is: 0 265s Hashing function is: 3 265s Collision profiling is: disabled 265s Repeats are: unmasked 265s Mergefilter is at: 100 265s Random seed: 1710556552 (automatic) 265s Bitscore output: on 265s Leave status records: no 265s Join neighbors is: off 265s Target memory is: 1.24 GB 265s Retain members is: true 265s Store repeatmap? yes 265s Reverse complement data is generated on the fly 265s Rifts allowed: 0 265s Fuzzy Extension: yes 265s Score by minimum pair: yes 265s Gapped anchors: no 265s Large sequence support is: enabled => seqpos is 8 bytes 265s Murasaki version 1.68.6 (LARGESEQ) 265s Loading NZ_GG705129.fna 265s Read 536bp (536 bytesp) in 0.000 seconds (1.9 MBp/s) 265s Done with forward strand (536bp). Preparing reverse complement... 265s <-> Reversing metdata. 265s Done. 265s Seq NZ_GG705129.fna loaded. 536 bytes 265s Loading NZ_GG705129.gbk 265s Read 536bp (536 bytesp) in 0.000 seconds (2.1 MBp/s) 265s Done with forward strand (536bp). Preparing reverse complement... 265s <-> Reversing metdata. 265s Done. 265s Seq NZ_GG705129.gbk loaded. 536 bytes 265s Sequence loading took: 0.001 seconds 265s Forward frequencies: A:36.3806% C:13.2463% G:17.9104% T:32.4627% 265s Global base frequencies: A/T:68.8433% C/G:31.1567% 265s Pat: 3 bases long with weight 2 265s 1 101 265s Computing hash parameters... 265s Using 4 hashbits 265s 0%......... (T -0.137 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 10%......... (T -0.121 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 20%......... (T -0.105 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 30%......... (T -0.089 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 40%......... (T -0.075 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 50%......... (T -0.060 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 91%........ 265s Acceptable hash function found after 1000 cycles. 265s Best uses 2/2 bases and has 0 empties from 2 inputs. 265s Score: 0.96875 (cf. worst: -4.51562) 265s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 265s Total correlation penalty: 0 265s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 265s 10 265s == 265s w[ 0]>>29: -.C 265s w[ 0]>>30: A.- 265s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 265s Ecolist (optimistic): Expcted entries per list: 8 265s Ecolist (optimistic): Minimum chunks per list: 4 265s Would take minimum 256.000000 bytes to make perfect hash. 265s Hashing 2.09 KB of sequence requires: 265s ~ linear (in seq length) hashing cost of 3.40 KB 265s ~ linear (in seq length) expected anchor cost of 50.25 KB 265s Initial hash table uses: 256 bytes (4 bits, 16 entries) 265s Expected memory usage (without anchors): 3.65 KB 265s Expected memory usage (with anchors): 53.90 KB 265s Hash parameters computed in 0.149 seconds 265s Creating storage structures: 16 entries in 256 bytes space. 265s Storage structures created in: 0.000 seconds 265s 265s Hashing NZ_GG705129.fna forwards 265s 0%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 10%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 80%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 91%....... 265s Hashing NZ_GG705129.fna backwards 265s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 60%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 80%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 91%....... 265s Hashing NZ_GG705129.gbk forwards 265s 0%........ (T -0.004 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 10%........ (T -0.003 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 20%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 30%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 40%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 50%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 60%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 80%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 91%....... 265s Hashing NZ_GG705129.gbk backwards 265s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 50%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 60%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 70%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 80%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 91%....... 265s Initial hashing took: 0.006 seconds 265s Extracting anchors from hash-space. 265s (T -0.002 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 31%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 43%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 93%. 265s Anchor extraction completed in: 0.001 seconds 265s Total anchors: 0 265s Anchor extraction + merge time: 0.001 seconds 265s Total processing time: 0.157 seconds 265s Writing anchors... 265s Total seeds used in anchors: 16 265s Hash performance: 265s Keys used: 16 out of 16 possible (100.00%). 265s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 265s Average pigeons per pigeon hole: 1 265s Writing 16 repeats...Output writing finished in: 0.001 seconds 265s Total time: 0.158 seconds 265s Murasaki finished! 265s PASSED MURASAKI 265s 265s Testing Genepare on NZ_GG705129.fna 265s 18446744073709551153 265s PASSED GENEPARSE 265s 265s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 265s Testing mbfa on NZ_GG705129.fna 265s PASSED mbfa 265s 265s Test Murasaki on NZ_GG705130.fna 265s Verbosity level is: 0 265s Writing to: output/test 265s Pattern is: 101 265s Max usable hash bits: 27 265s Hit filter is: 0 265s Hash table type is: EcoHash 265s Hashing every: 1 base 265s Histogram detail is: 0 265s Hashing function is: 3 265s Collision profiling is: disabled 265s Repeats are: unmasked 265s Mergefilter is at: 100 265s Random seed: 1710556553 (automatic) 265s Bitscore output: on 265s Leave status records: no 265s Join neighbors is: off 265s Target memory is: 1.24 GB 265s Retain members is: true 265s Store repeatmap? yes 265s Reverse complement data is generated on the fly 265s Rifts allowed: 0 265s Fuzzy Extension: yes 265s Score by minimum pair: yes 265s Gapped anchors: no 265s Large sequence support is: enabled => seqpos is 8 bytes 265s Murasaki version 1.68.6 (LARGESEQ) 265s Loading NZ_GG705130.fna 265s Read 512bp (512 bytesp) in 0.000 seconds (1.5 MBp/s) 265s Done with forward strand (512bp). Preparing reverse complement... 265s <-> Reversing metdata. 265s Done. 265s Seq NZ_GG705130.fna loaded. 512 bytes 265s Loading NZ_GG705130.gbk 265s Read 512bp (512 bytesp) in 0.000 seconds (2.0 MBp/s) 265s Done with forward strand (512bp). Preparing reverse complement... 265s <-> Reversing metdata. 265s Done. 265s Seq NZ_GG705130.gbk loaded. 512 bytes 265s Sequence loading took: 0.001 seconds 265s Forward frequencies: A:33.5938% C:14.4531% G:19.1406% T:32.8125% 265s Global base frequencies: A/T:66.4062% C/G:33.5938% 265s Pat: 3 bases long with weight 2 265s 1 101 265s Computing hash parameters... 265s Using 4 hashbits 265s 0%......... (T -0.146 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 10%......... (T -0.125 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 20%......... (T -0.108 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 30%......... (T -0.092 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 40%......... (T -0.076 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 50%......... (T -0.061 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 60%......... (T -0.045 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 70%......... (T -0.030 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 80%......... (T -0.013 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 91%........ 265s Acceptable hash function found after 1000 cycles. 265s Best uses 2/2 bases and has 0 empties from 2 inputs. 265s Score: 0.96875 (cf. worst: -4.51562) 265s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0) 265s Total correlation penalty: 0 265s Post cleanup: w[0]>>29 ^ w[0]>>30 {2} 265s 10 265s == 265s w[ 0]>>29: -.C 265s w[ 0]>>30: A.- 265s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1) 265s Ecolist (optimistic): Expcted entries per list: 8 265s Ecolist (optimistic): Minimum chunks per list: 4 265s Would take minimum 256.000000 bytes to make perfect hash. 265s Hashing 2.00 KB of sequence requires: 265s ~ linear (in seq length) hashing cost of 3.25 KB 265s ~ linear (in seq length) expected anchor cost of 48.00 KB 265s Initial hash table uses: 256 bytes (4 bits, 16 entries) 265s Expected memory usage (without anchors): 3.50 KB 265s Expected memory usage (with anchors): 51.50 KB 265s Hash parameters computed in 0.152 seconds 265s Creating storage structures: 16 entries in 256 bytes space. 265s Storage structures created in: 0.000 seconds 265s 265s Hashing NZ_GG705130.fna forwards 265s 0%........ (T -0.006 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 10%........ (T -0.006 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 20%........ (T -0.005 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 30%........ (T -0.004 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 40%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 51%........ (T -0.002 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 61%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 71%........ (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 91%...... 265s Hashing NZ_GG705130.fna backwards 265s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 51%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 61%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 91%...... 265s Hashing NZ_GG705130.gbk forwards 265s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 51%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 61%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 91%...... 265s Hashing NZ_GG705130.gbk backwards 265s 0%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 10%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 20%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 30%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 40%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 51%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 61%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 71%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 81%........ (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 91%...... 265s Initial hashing took: 0.005 seconds 265s Extracting anchors from hash-space. 265s (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 6%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 18%. (T -0.001 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 31%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 43%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 56%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 68%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 81%. (T -0.000 seconds) ETA: Sat Mar 16 02:35:53 2024 265s 93%. 265s Anchor extraction completed in: 0.001 seconds 265s Total anchors: 0 265s Anchor extraction + merge time: 0.001 seconds 265s Total processing time: 0.158 seconds 265s Writing anchors... 265s Total seeds used in anchors: 16 265s Hash performance: 265s Keys used: 16 out of 16 possible (100.00%). 265s Used keyspace is 100.00% = 100.00% of magic *optimal 100.00% 265s Average pigeons per pigeon hole: 1 265s Writing 16 repeats...Output writing finished in: 0.001 seconds 265s Total time: 0.159 seconds 265s Murasaki finished! 265s PASSED MURASAKI 265s 265s Testing Genepare on NZ_GG705130.fna 265s 18446744073709551129 265s PASSED GENEPARSE 265s 265s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 265s Testing mbfa on NZ_GG705130.fna 265s PASSED mbfa 265s 265s PASS! 265s autopkgtest [02:35:53]: test run-unit-test: -----------------------] 266s autopkgtest [02:35:54]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 266s run-unit-test PASS 266s autopkgtest [02:35:54]: @@@@@@@@@@@@@@@@@@@@ summary 266s run-unit-test PASS 306s Creating nova instance adt-noble-ppc64el-murasaki-20240316-023128-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240315.img (UUID ce913c63-9f6c-46f7-a674-fa2454cb6d6b)...