1s autopkgtest [20:14:21]: starting date and time: 2024-03-14 20:14:21+0000
  1s autopkgtest [20:14:22]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  1s autopkgtest [20:14:22]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f31eyh2p/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:boost1.83,src:openmpi,src:pmix --apt-upgrade murasaki --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=boost1.83/1.83.0-2.1ubuntu2 openmpi/4.1.6-5.1ubuntu3 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-4.secgroup --name adt-noble-ppc64el-murasaki-20240314-201421-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
134s autopkgtest [20:16:35]: testbed dpkg architecture: ppc64el
134s autopkgtest [20:16:35]: testbed apt version: 2.7.12
134s autopkgtest [20:16:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup
135s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
135s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [454 kB]
135s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B]
135s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [48.4 kB]
135s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3020 kB]
136s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [607 kB]
136s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
136s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
136s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
136s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3317 kB]
136s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
136s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [42.8 kB]
136s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
139s Fetched 7625 kB in 2s (3750 kB/s)
139s Reading package lists...
142s Reading package lists...
142s Building dependency tree...
142s Reading state information...
142s Calculating upgrade...
142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
142s Reading package lists...
142s Building dependency tree...
142s Reading state information...
142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
143s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
143s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
143s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
143s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
144s Reading package lists...
144s Reading package lists...
144s Building dependency tree...
144s Reading state information...
144s Calculating upgrade...
145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
145s Reading package lists...
145s Building dependency tree...
145s Reading state information...
145s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
148s autopkgtest [20:16:49]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024
148s autopkgtest [20:16:49]: @@@@@@@@@@@@@@@@@@@@ apt-source murasaki
151s Get:1 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (dsc) [2787 B]
151s Get:2 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [3944 kB]
151s Get:3 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (tar) [308 kB]
151s Get:4 http://ftpmaster.internal/ubuntu noble/universe murasaki 1.68.6-13build4 (diff) [11.4 kB]
151s gpgv: Signature made Tue Dec 19 15:02:21 2023 UTC
151s gpgv:                using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37
151s gpgv: Can't check signature: No public key
151s dpkg-source: warning: cannot verify inline signature for ./murasaki_1.68.6-13build4.dsc: no acceptable signature found
151s autopkgtest [20:16:52]: testing package murasaki version 1.68.6-13build4
151s autopkgtest [20:16:52]: build not needed
152s autopkgtest [20:16:53]: test run-unit-test: preparing testbed
159s Reading package lists...
159s Building dependency tree...
159s Reading state information...
159s Starting pkgProblemResolver with broken count: 0
159s Starting 2 pkgProblemResolver with broken count: 0
159s Done
160s The following additional packages will be installed:
160s   adwaita-icon-theme aglfn at-spi2-common autoconf automake autotools-dev
160s   cpp-13-powerpc64le-linux-gnu dconf-gsettings-backend dconf-service
160s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-13
160s   gcc-13-powerpc64le-linux-gnu gfortran-13 gfortran-13-powerpc64le-linux-gnu
160s   gnuplot gnuplot-data gnuplot-qt gtk-update-icon-cache hicolor-icon-theme
160s   humanity-icon-theme icu-devtools imagemagick imagemagick-6-common
160s   imagemagick-6.q16 libamd-comgr2 libamdhip64-5 libasan8 libatk-bridge2.0-0
160s   libatk1.0-0 libatomic1 libatspi2.0-0 libavahi-client3 libavahi-common-data
160s   libavahi-common3 libbio-perl-perl libblas3 libboost-atomic1.83-dev
160s   libboost-atomic1.83.0 libboost-filesystem-dev libboost-filesystem1.83-dev
160s   libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev
160s   libboost-iostreams1.83.0 libboost-regex-dev libboost-regex1.83-dev
160s   libboost-regex1.83.0 libboost-system1.83-dev libboost-system1.83.0
160s   libboost1.83-dev libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcc1-0
160s   libcolord2 libcrypt-dev libcrypto++-dev libcrypto++8t64 libcups2
160s   libdata-stag-perl libdatrie1 libdav1d7 libdconf1 libde265-0 libdeflate0
160s   libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1
160s   libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev
160s   libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7
160s   libfabric1 libfftw3-double3 libfontconfig1 libgbm1 libgcc-13-dev libgd3
160s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5
160s   libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1
160s   libgraphite2-3 libgtk-3-0 libgtk-3-common libharfbuzz0b libheif-plugin-dav1d
160s   libheif-plugin-libde265 libheif1 libhsa-runtime64-1 libhsakmt1 libhwloc-dev
160s   libhwloc-plugins libhwloc15 libibverbs-dev libice6 libicu-dev libinput-bin
160s   libinput10 libio-string-perl libisl23 libitm1 libjbig0 libjpeg-turbo8
160s   libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 liblerc4
160s   libllvm17 liblqr-1-0 liblsan0 libltdl-dev libltdl7 liblua5.4-0
160s   libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmd4c0 libmpc3 libmtdev1
160s   libmunge2 libnl-3-dev libnl-route-3-dev libnotify4 libnsl-dev libnuma-dev
160s   libopenjp2-7 libopenmpi-dev libopenmpi3t64 libpango-1.0-0
160s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0
160s   libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpmix-dev libpmix2t64
160s   libpstreams-dev libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5
160s   libqt5printsupport5 libqt5svg5 libqt5widgets5 libquadmath0 libraw23
160s   librdmacm1t64 libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6
160s   libterm-readkey-perl libtext-wrapper-perl libthai-data libthai0 libtiff6
160s   libtirpc-dev libtk8.6 libtsan2 libubsan1 libucx0 libvulkan1 libwacom-common
160s   libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1
160s   libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1
160s   libwxgtk3.2-1 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
160s   libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
160s   libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
160s   libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
160s   libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6
160s   libxinerama1 libxkbcommon-x11-0 libxnvctrl0 libxpm4 libxrandr2 libxrender1
160s   libxshmfence1 libxss1 libxt6 libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki
160s   murasaki-common murasaki-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common
160s   r-base-core r-cran-bitops r-cran-catools r-cran-gdata r-cran-gplots
160s   r-cran-gtools r-cran-kernsmooth r-cran-mass r-cran-rocr rpcsvc-proto
160s   ubuntu-mono unzip x11-common xdg-utils zip zlib1g-dev
160s Suggested packages:
160s   autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-13-locales
160s   cpp-13-doc gcc-13-doc gfortran-13-doc libcoarrays-dev gnuplot-doc
160s   imagemagick-6-doc autotrace cups-bsd | lpr | lprng enscript ffmpeg gimp
160s   grads graphviz hp2xx html2ps libwmf-bin mplayer povray radiance sane-utils
160s   texlive-base-bin transfig libraw-bin bioperl libxml-sax-expatxs-perl
160s   libboost1.83-doc libboost-chrono1.83-dev libboost-container1.83-dev
160s   libboost-context1.83-dev libboost-contract1.83-dev
160s   libboost-coroutine1.83-dev libboost-date-time1.83-dev
160s   libboost-exception1.83-dev libboost-fiber1.83-dev
160s   libboost-graph-parallel1.83-dev libboost-graph1.83-dev libboost-json1.83-dev
160s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
160s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
160s   libboost-numpy1.83-dev libboost-program-options1.83-dev
160s   libboost-python1.83-dev libboost-random1.83-dev
160s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
160s   libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev
160s   libboost-type-erasure1.83-dev libboost-url1.83-dev libboost-wave1.83-dev
160s   libboost1.83-tools-dev libmpfrc++-dev libntl-dev glibc-doc manpages-dev
160s   colord cups-common libfftw3-bin libfftw3-dev libgd-tools gvfs
160s   libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc
160s   libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e
160s   libheif-plugin-svtenc icu-doc libjs-jquery-ui-docs liblcms2-utils
160s   libtool-doc libmagickcore-6.q16-7-extra notification-daemon openmpi-doc
160s   qgnomeplatform-qt5 qt5-image-formats-plugins libstdc++-13-doc tcl8.6 tk8.6
160s   libwacom-bin m4-doc opencl-icd gfortran | fortran-compiler elpa-ess
160s   r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-rpart r-cran-knitr
160s   r-cran-rmarkdown
160s Recommended packages:
160s   librsvg2-common libmagickcore-6.q16-7-extra ghostscript netpbm at-spi2-core
160s   bioperl-run | libbio-perl-run-perl libace-perl libalgorithm-munkres-perl
160s   libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl
160s   libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl
160s   libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl
160s   libhtml-tableextract-perl liblist-moreutils-perl libpostscript-perl
160s   libset-scalar-perl libsoap-lite-perl libsort-naturally-perl
160s   libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl
160s   libsvg-graph-perl liburi-perl libxml-dom-xpath-perl libxml-parser-perl
160s   libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl
160s   libxml-writer-perl libxml-libxml-perl libwww-perl manpages manpages-dev
160s   libc-devtools perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl
160s   libxml-libxslt-perl libmldbm-perl libxml-perl libgdk-pixbuf2.0-bin
160s   libgl1-amber-dri libgtk-3-bin libheif-plugin-aomenc libheif-plugin-x265
160s   javascript-common libtool fonts-urw-base35 libcoarrays-openmpi-dev
160s   qttranslations5-l10n qt5-gtk-platformtheme qtwayland5 mesa-vulkan-drivers
160s   | vulkan-icd r-recommended r-base-dev r-doc-html r-cran-testthat
160s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
160s   x11-xserver-utils
160s The following NEW packages will be installed:
160s   adwaita-icon-theme aglfn at-spi2-common autoconf automake autopkgtest-satdep
160s   autotools-dev cpp-13-powerpc64le-linux-gnu dconf-gsettings-backend
160s   dconf-service fontconfig fontconfig-config fonts-dejavu-core
160s   fonts-dejavu-mono gcc-13 gcc-13-powerpc64le-linux-gnu gfortran-13
160s   gfortran-13-powerpc64le-linux-gnu gnuplot gnuplot-data gnuplot-qt
160s   gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools
160s   imagemagick imagemagick-6-common imagemagick-6.q16 libamd-comgr2
160s   libamdhip64-5 libasan8 libatk-bridge2.0-0 libatk1.0-0 libatomic1
160s   libatspi2.0-0 libavahi-client3 libavahi-common-data libavahi-common3
160s   libbio-perl-perl libblas3 libboost-atomic1.83-dev libboost-atomic1.83.0
160s   libboost-filesystem-dev libboost-filesystem1.83-dev
160s   libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev
160s   libboost-iostreams1.83.0 libboost-regex-dev libboost-regex1.83-dev
160s   libboost-regex1.83.0 libboost-system1.83-dev libboost-system1.83.0
160s   libboost1.83-dev libc-dev-bin libc6-dev libcairo-gobject2 libcairo2 libcc1-0
160s   libcolord2 libcrypt-dev libcrypto++-dev libcrypto++8t64 libcups2
160s   libdata-stag-perl libdatrie1 libdav1d7 libdconf1 libde265-0 libdeflate0
160s   libdouble-conversion3 libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1
160s   libegl-mesa0 libegl1 libepoxy0 libevent-2.1-7 libevent-dev
160s   libevent-extra-2.1-7 libevent-openssl-2.1-7 libevent-pthreads-2.1-7
160s   libfabric1 libfftw3-double3 libfontconfig1 libgbm1 libgcc-13-dev libgd3
160s   libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran-13-dev libgfortran5
160s   libgl1 libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgomp1
160s   libgraphite2-3 libgtk-3-0 libgtk-3-common libharfbuzz0b libheif-plugin-dav1d
160s   libheif-plugin-libde265 libheif1 libhsa-runtime64-1 libhsakmt1 libhwloc-dev
160s   libhwloc-plugins libhwloc15 libibverbs-dev libice6 libicu-dev libinput-bin
160s   libinput10 libio-string-perl libisl23 libitm1 libjbig0 libjpeg-turbo8
160s   libjpeg8 libjs-jquery libjs-jquery-ui liblapack3 liblcms2-2 liblerc4
160s   libllvm17 liblqr-1-0 liblsan0 libltdl-dev libltdl7 liblua5.4-0
160s   libmagickcore-6.q16-7 libmagickwand-6.q16-7 libmd4c0 libmpc3 libmtdev1
160s   libmunge2 libnl-3-dev libnl-route-3-dev libnotify4 libnsl-dev libnuma-dev
160s   libopenjp2-7 libopenmpi-dev libopenmpi3t64 libpango-1.0-0
160s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpciaccess0
160s   libpcre2-16-0 libpcre2-32-0 libpixman-1-0 libpmix-dev libpmix2t64
160s   libpstreams-dev libqt5core5a libqt5dbus5 libqt5gui5 libqt5network5
160s   libqt5printsupport5 libqt5svg5 libqt5widgets5 libquadmath0 libraw23
160s   librdmacm1t64 libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6
160s   libterm-readkey-perl libtext-wrapper-perl libthai-data libthai0 libtiff6
160s   libtirpc-dev libtk8.6 libtsan2 libubsan1 libucx0 libvulkan1 libwacom-common
160s   libwacom9 libwayland-client0 libwayland-cursor0 libwayland-egl1
160s   libwayland-server0 libwebp7 libwebpdemux2 libwebpmux3 libwxbase3.2-1
160s   libwxgtk3.2-1 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0
160s   libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
160s   libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
160s   libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
160s   libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6
160s   libxinerama1 libxkbcommon-x11-0 libxnvctrl0 libxpm4 libxrandr2 libxrender1
160s   libxshmfence1 libxss1 libxt6 libxtst6 libxxf86vm1 linux-libc-dev m4 murasaki
160s   murasaki-common murasaki-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common
160s   r-base-core r-cran-bitops r-cran-catools r-cran-gdata r-cran-gplots
160s   r-cran-gtools r-cran-kernsmooth r-cran-mass r-cran-rocr rpcsvc-proto
160s   ubuntu-mono unzip x11-common xdg-utils zip zlib1g-dev
160s 0 upgraded, 255 newly installed, 0 to remove and 0 not upgraded.
160s Need to get 243 MB/243 MB of archives.
160s After this operation, 1119 MB of additional disk space will be used.
160s Get:1 /tmp/autopkgtest.jLHO3o/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [796 B]
160s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB]
160s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libfftw3-double3 ppc64el 3.3.10-1ubuntu1 [440 kB]
160s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
160s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
160s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB]
160s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB]
160s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB]
160s Get:9 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdav1d7 ppc64el 1.4.0-1 [461 kB]
160s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el libheif-plugin-dav1d ppc64el 1.17.6-1ubuntu1 [11.3 kB]
160s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el libde265-0 ppc64el 1.0.15-1 [329 kB]
160s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el libheif-plugin-libde265 ppc64el 1.17.6-1ubuntu1 [9566 B]
160s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el libheif1 ppc64el 1.17.6-1ubuntu1 [381 kB]
161s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB]
161s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB]
161s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
161s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB]
161s Get:18 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblqr-1-0 ppc64el 0.4.2-2.1 [37.5 kB]
161s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libltdl7 ppc64el 2.4.7-7 [48.0 kB]
161s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB]
161s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libraw23 ppc64el 0.21.2-2 [512 kB]
161s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
161s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB]
161s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB]
161s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB]
161s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB]
161s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB]
161s Get:28 http://ftpmaster.internal/ubuntu noble/universe ppc64el imagemagick-6-common all 8:6.9.12.98+dfsg1-5 [69.2 kB]
161s Get:29 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmagickcore-6.q16-7 ppc64el 8:6.9.12.98+dfsg1-5 [2204 kB]
161s Get:30 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmagickwand-6.q16-7 ppc64el 8:6.9.12.98+dfsg1-5 [290 kB]
161s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B]
161s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdk-pixbuf-2.0-0 ppc64el 2.42.10+dfsg-3 [186 kB]
161s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el gtk-update-icon-cache ppc64el 3.24.40-2ubuntu1 [53.2 kB]
161s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el hicolor-icon-theme all 0.17-2 [9976 B]
161s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el humanity-icon-theme all 0.6.16 [1282 kB]
161s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-mono all 24.04-0ubuntu1 [151 kB]
161s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el adwaita-icon-theme all 46~rc-1 [723 kB]
161s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el at-spi2-common all 2.50.0-1 [7864 B]
161s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el m4 ppc64el 1.4.19-4 [275 kB]
161s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el autoconf all 2.71-3 [339 kB]
161s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el autotools-dev all 20220109.1 [44.9 kB]
161s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el automake all 1:1.16.5-1.3ubuntu1 [558 kB]
161s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3 [864 kB]
161s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1 [61.2 kB]
161s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [10.7 MB]
162s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el libdconf1 ppc64el 0.40.0-4 [43.0 kB]
162s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el dconf-service ppc64el 0.40.0-4 [31.0 kB]
162s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el dconf-gsettings-backend ppc64el 0.40.0-4 [25.3 kB]
162s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1ubuntu1 [192 kB]
162s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240303-1ubuntu1 [48.1 kB]
162s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240303-1ubuntu1 [32.4 kB]
162s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240303-1ubuntu1 [10.7 kB]
162s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240303-1ubuntu1 [2973 kB]
162s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240303-1ubuntu1 [1325 kB]
162s Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240303-1ubuntu1 [2734 kB]
162s Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240303-1ubuntu1 [1194 kB]
162s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240303-1ubuntu1 [158 kB]
162s Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-17ubuntu2 [1581 kB]
162s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [20.6 MB]
162s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-17ubuntu2 [477 kB]
162s Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB]
162s Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran-13-dev ppc64el 13.2.0-17ubuntu2 [604 kB]
162s Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu2 [21.3 kB]
162s Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el linux-libc-dev ppc64el 6.8.0-11.11 [1585 kB]
162s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB]
162s Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libtirpc-dev ppc64el 1.3.4+ds-1build1 [262 kB]
162s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libnsl-dev ppc64el 1.3.0-3 [79.2 kB]
162s Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB]
162s Get:69 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu2 [2102 kB]
162s Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13-powerpc64le-linux-gnu ppc64el 13.2.0-17ubuntu2 [11.2 MB]
163s Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el gfortran-13 ppc64el 13.2.0-17ubuntu2 [10.3 kB]
163s Get:72 http://ftpmaster.internal/ubuntu noble/universe ppc64el aglfn all 1.7+git20191031.4036a9c-2 [30.6 kB]
163s Get:73 http://ftpmaster.internal/ubuntu noble/universe ppc64el gnuplot-data all 5.4.4+dfsg1-2build1 [74.6 kB]
163s Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB]
163s Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB]
163s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B]
163s Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB]
163s Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB]
163s Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el libxpm4 ppc64el 1:3.5.17-1 [48.6 kB]
163s Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el libgd3 ppc64el 2.3.3-9ubuntu1 [155 kB]
163s Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el liblua5.4-0 ppc64el 5.4.6-3 [216 kB]
163s Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB]
163s Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB]
163s Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2 [158 kB]
163s Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3 [25.1 kB]
163s Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2 [21.4 kB]
163s Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.51.0+ds-4 [266 kB]
163s Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.51.0+ds-4 [49.5 kB]
163s Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.51.0+ds-4 [31.2 kB]
163s Get:90 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdouble-conversion3 ppc64el 3.3.0-1 [43.3 kB]
163s Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-16-0 ppc64el 10.42-4ubuntu1 [245 kB]
163s Get:92 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqt5core5a ppc64el 5.15.12+dfsg-3ubuntu1 [2193 kB]
163s Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el libglvnd0 ppc64el 1.7.0-1 [84.0 kB]
163s Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el libwayland-server0 ppc64el 1.22.0-2.1 [39.7 kB]
163s Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-randr0 ppc64el 1.15-1 [18.9 kB]
163s Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el libgbm1 ppc64el 24.0.1-1ubuntu1 [44.1 kB]
163s Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el libglapi-mesa ppc64el 24.0.1-1ubuntu1 [41.8 kB]
163s Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el libwayland-client0 ppc64el 1.22.0-2.1 [29.4 kB]
163s Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el libx11-xcb1 ppc64el 2:1.8.7-1 [7866 B]
163s Get:100 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-dri2-0 ppc64el 1.15-1 [7444 B]
163s Get:101 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-dri3-0 ppc64el 1.15-1 [7392 B]
163s Get:102 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-present0 ppc64el 1.15-1 [5814 B]
163s Get:103 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-sync1 ppc64el 1.15-1 [9720 B]
163s Get:104 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-xfixes0 ppc64el 1.15-1 [10.6 kB]
163s Get:105 http://ftpmaster.internal/ubuntu noble/main ppc64el libxshmfence1 ppc64el 1.3-1build4 [5566 B]
163s Get:106 http://ftpmaster.internal/ubuntu noble/main ppc64el libegl-mesa0 ppc64el 24.0.1-1ubuntu1 [117 kB]
164s Get:107 http://ftpmaster.internal/ubuntu noble/main ppc64el libegl1 ppc64el 1.7.0-1 [33.2 kB]
164s Get:108 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-glx0 ppc64el 1.15-1 [26.2 kB]
164s Get:109 http://ftpmaster.internal/ubuntu noble/main ppc64el libxfixes3 ppc64el 1:6.0.0-2 [11.6 kB]
164s Get:110 http://ftpmaster.internal/ubuntu noble/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1build3 [11.8 kB]
164s Get:111 http://ftpmaster.internal/ubuntu noble/main ppc64el libvulkan1 ppc64el 1.3.275.0-1 [176 kB]
164s Get:112 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-amdgpu1 ppc64el 2.4.120-2 [24.5 kB]
164s Get:113 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-nouveau2 ppc64el 2.4.120-2 [21.2 kB]
164s Get:114 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-radeon1 ppc64el 2.4.120-2 [30.6 kB]
164s Get:115 http://ftpmaster.internal/ubuntu noble/main ppc64el libllvm17 ppc64el 1:17.0.6-5build1 [27.3 MB]
165s Get:116 http://ftpmaster.internal/ubuntu noble/main ppc64el libgl1-mesa-dri ppc64el 24.0.1-1ubuntu1 [5885 kB]
165s Get:117 http://ftpmaster.internal/ubuntu noble/main ppc64el libglx-mesa0 ppc64el 24.0.1-1ubuntu1 [160 kB]
165s Get:118 http://ftpmaster.internal/ubuntu noble/main ppc64el libglx0 ppc64el 1.7.0-1 [42.1 kB]
165s Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libgl1 ppc64el 1.7.0-1 [108 kB]
165s Get:120 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB]
165s Get:121 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build2 [49.3 kB]
165s Get:122 http://ftpmaster.internal/ubuntu noble/main ppc64el libmtdev1 ppc64el 1.1.6-1build4 [18.5 kB]
165s Get:123 http://ftpmaster.internal/ubuntu noble/main ppc64el libwacom-common all 2.10.0-1 [63.3 kB]
165s Get:124 http://ftpmaster.internal/ubuntu noble/main ppc64el libwacom9 ppc64el 2.10.0-1 [29.0 kB]
165s Get:125 http://ftpmaster.internal/ubuntu noble/main ppc64el libinput-bin ppc64el 1.25.0-1 [22.6 kB]
165s Get:126 http://ftpmaster.internal/ubuntu noble/main ppc64el libinput10 ppc64el 1.25.0-1 [163 kB]
165s Get:127 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmd4c0 ppc64el 0.4.8-1 [53.3 kB]
165s Get:128 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqt5dbus5 ppc64el 5.15.12+dfsg-3ubuntu1 [245 kB]
165s Get:129 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqt5network5 ppc64el 5.15.12+dfsg-3ubuntu1 [814 kB]
165s Get:130 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build2 [18.5 kB]
165s Get:131 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-icccm4 ppc64el 0.4.1-1.1build2 [11.8 kB]
165s Get:132 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-util1 ppc64el 0.4.0-1build2 [11.5 kB]
165s Get:133 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-image0 ppc64el 0.4.0-2 [12.5 kB]
165s Get:134 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-keysyms1 ppc64el 0.4.0-1build3 [9152 B]
165s Get:135 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render-util0 ppc64el 0.3.9-1build3 [11.2 kB]
165s Get:136 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shape0 ppc64el 1.15-1 [6254 B]
165s Get:137 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-xinerama0 ppc64el 1.15-1 [5484 B]
165s Get:138 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-xinput0 ppc64el 1.15-1 [37.1 kB]
165s Get:139 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-xkb1 ppc64el 1.15-1 [36.0 kB]
165s Get:140 http://ftpmaster.internal/ubuntu noble/main ppc64el libxkbcommon-x11-0 ppc64el 1.6.0-1 [15.3 kB]
165s Get:141 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqt5gui5 ppc64el 5.15.12+dfsg-3ubuntu1 [4131 kB]
165s Get:142 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-common-data ppc64el 0.8-13ubuntu2 [29.5 kB]
165s Get:143 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-common3 ppc64el 0.8-13ubuntu2 [25.8 kB]
165s Get:144 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-client3 ppc64el 0.8-13ubuntu2 [30.6 kB]
165s Get:145 http://ftpmaster.internal/ubuntu noble/main ppc64el libcups2 ppc64el 2.4.6-0ubuntu3 [344 kB]
165s Get:146 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqt5widgets5 ppc64el 5.15.12+dfsg-3ubuntu1 [2805 kB]
165s Get:147 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqt5printsupport5 ppc64el 5.15.12+dfsg-3ubuntu1 [224 kB]
165s Get:148 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqt5svg5 ppc64el 5.15.12-1 [196 kB]
165s Get:149 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcre2-32-0 ppc64el 10.42-4ubuntu1 [228 kB]
165s Get:150 http://ftpmaster.internal/ubuntu noble/universe ppc64el libwxbase3.2-1 ppc64el 3.2.4+dfsg-3 [1019 kB]
165s Get:151 http://ftpmaster.internal/ubuntu noble/main ppc64el libatk1.0-0 ppc64el 2.50.0-1 [57.8 kB]
165s Get:152 http://ftpmaster.internal/ubuntu noble/main ppc64el libxi6 ppc64el 2:1.8.1-1 [37.9 kB]
165s Get:153 http://ftpmaster.internal/ubuntu noble/main ppc64el libatspi2.0-0 ppc64el 2.50.0-1 [93.5 kB]
165s Get:154 http://ftpmaster.internal/ubuntu noble/main ppc64el libatk-bridge2.0-0 ppc64el 2.50.0-1 [75.5 kB]
165s Get:155 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo-gobject2 ppc64el 1.18.0-1 [127 kB]
166s Get:156 http://ftpmaster.internal/ubuntu noble/main ppc64el libcolord2 ppc64el 1.4.7-1 [164 kB]
166s Get:157 http://ftpmaster.internal/ubuntu noble/main ppc64el libepoxy0 ppc64el 1.5.10-1 [247 kB]
166s Get:158 http://ftpmaster.internal/ubuntu noble/main ppc64el libwayland-cursor0 ppc64el 1.22.0-2.1 [11.4 kB]
166s Get:159 http://ftpmaster.internal/ubuntu noble/main ppc64el libwayland-egl1 ppc64el 1.22.0-2.1 [5626 B]
166s Get:160 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcomposite1 ppc64el 1:0.4.5-1build2 [7400 B]
166s Get:161 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcursor1 ppc64el 1:1.2.1-1 [26.9 kB]
166s Get:162 http://ftpmaster.internal/ubuntu noble/main ppc64el libxdamage1 ppc64el 1:1.1.6-1 [6320 B]
166s Get:163 http://ftpmaster.internal/ubuntu noble/main ppc64el libxinerama1 ppc64el 2:1.1.4-3 [7658 B]
166s Get:164 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrandr2 ppc64el 2:1.5.2-2 [22.7 kB]
166s Get:165 http://ftpmaster.internal/ubuntu noble/main ppc64el libgtk-3-common all 3.24.40-2ubuntu1 [1200 kB]
166s Get:166 http://ftpmaster.internal/ubuntu noble/main ppc64el libgtk-3-0 ppc64el 3.24.40-2ubuntu1 [3344 kB]
166s Get:167 http://ftpmaster.internal/ubuntu noble/main ppc64el libnotify4 ppc64el 0.8.3-1 [27.6 kB]
166s Get:168 http://ftpmaster.internal/ubuntu noble/main ppc64el libxtst6 ppc64el 2:1.2.3-1.1 [15.4 kB]
166s Get:169 http://ftpmaster.internal/ubuntu noble/universe ppc64el libwxgtk3.2-1 ppc64el 3.2.4+dfsg-3 [5165 kB]
166s Get:170 http://ftpmaster.internal/ubuntu noble/universe ppc64el gnuplot-qt ppc64el 5.4.4+dfsg1-2build1 [1370 kB]
166s Get:171 http://ftpmaster.internal/ubuntu noble/universe ppc64el gnuplot all 5.4.4+dfsg1-2build1 [3584 B]
166s Get:172 http://ftpmaster.internal/ubuntu noble/main ppc64el icu-devtools ppc64el 74.2-1ubuntu1 [246 kB]
166s Get:173 http://ftpmaster.internal/ubuntu noble/universe ppc64el imagemagick-6.q16 ppc64el 8:6.9.12.98+dfsg1-5 [254 kB]
166s Get:174 http://ftpmaster.internal/ubuntu noble/universe ppc64el imagemagick ppc64el 8:6.9.12.98+dfsg1-5 [14.2 kB]
166s Get:175 http://ftpmaster.internal/ubuntu noble/universe ppc64el libamd-comgr2 ppc64el 6.0+git20231212.4510c28+dfsg-3 [15.3 MB]
166s Get:176 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhsakmt1 ppc64el 5.7.0-1 [76.5 kB]
166s Get:177 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhsa-runtime64-1 ppc64el 5.7.1-1 [330 kB]
166s Get:178 http://ftpmaster.internal/ubuntu noble/universe ppc64el libamdhip64-5 ppc64el 5.2.3-12 [5004 kB]
167s Get:179 http://ftpmaster.internal/ubuntu noble/main ppc64el libio-string-perl all 1.08-4 [11.1 kB]
167s Get:180 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdata-stag-perl all 0.14-3 [372 kB]
167s Get:181 http://ftpmaster.internal/ubuntu noble/universe ppc64el libbio-perl-perl all 1.7.8-1 [2580 kB]
167s Get:182 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB]
167s Get:183 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-17ubuntu2 [2445 kB]
167s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost1.83-dev ppc64el 1.83.0-2.1ubuntu2 [10.7 MB]
167s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-atomic1.83.0 ppc64el 1.83.0-2.1ubuntu2 [240 kB]
167s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-atomic1.83-dev ppc64el 1.83.0-2.1ubuntu2 [235 kB]
167s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-filesystem1.83.0 ppc64el 1.83.0-2.1ubuntu2 [288 kB]
167s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-system1.83.0 ppc64el 1.83.0-2.1ubuntu2 [236 kB]
167s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-system1.83-dev ppc64el 1.83.0-2.1ubuntu2 [231 kB]
167s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libboost-filesystem1.83-dev ppc64el 1.83.0-2.1ubuntu2 [306 kB]
167s Get:191 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-filesystem-dev ppc64el 1.83.0.1ubuntu2 [4098 B]
167s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-regex1.83.0 ppc64el 1.83.0-2.1ubuntu2 [346 kB]
167s Get:193 http://ftpmaster.internal/ubuntu noble/main ppc64el libicu-dev ppc64el 74.2-1ubuntu1 [12.5 MB]
167s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-regex1.83-dev ppc64el 1.83.0-2.1ubuntu2 [365 kB]
167s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libboost-iostreams1.83.0 ppc64el 1.83.0-2.1ubuntu2 [259 kB]
167s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libboost-iostreams1.83-dev ppc64el 1.83.0-2.1ubuntu2 [264 kB]
167s Get:197 http://ftpmaster.internal/ubuntu noble/universe ppc64el libboost-iostreams-dev ppc64el 1.83.0.1ubuntu2 [4050 B]
167s Get:198 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-regex-dev ppc64el 1.83.0.1ubuntu2 [4326 B]
167s Get:199 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcrypto++8t64 ppc64el 8.9.0-1.1 [1289 kB]
167s Get:200 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcrypto++-dev ppc64el 8.9.0-1.1 [2238 kB]
167s Get:201 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-2.1-7 ppc64el 2.1.12-stable-9 [169 kB]
167s Get:202 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-extra-2.1-7 ppc64el 2.1.12-stable-9 [75.2 kB]
167s Get:203 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-pthreads-2.1-7 ppc64el 2.1.12-stable-9 [7844 B]
168s Get:204 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-openssl-2.1-7 ppc64el 2.1.12-stable-9 [16.8 kB]
168s Get:205 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-dev ppc64el 2.1.12-stable-9 [329 kB]
168s Get:206 http://ftpmaster.internal/ubuntu noble/main ppc64el librdmacm1t64 ppc64el 50.0-2 [80.9 kB]
168s Get:207 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfabric1 ppc64el 1.17.0-3 [677 kB]
168s Get:208 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhwloc15 ppc64el 2.10.0-1 [216 kB]
168s Get:209 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
168s Get:210 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
168s Get:211 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB]
168s Get:212 http://ftpmaster.internal/ubuntu noble/main ppc64el libltdl-dev ppc64el 2.4.7-7 [178 kB]
168s Get:213 http://ftpmaster.internal/ubuntu noble/main ppc64el libnl-3-dev ppc64el 3.7.0-0.3 [130 kB]
168s Get:214 http://ftpmaster.internal/ubuntu noble/main ppc64el libnl-route-3-dev ppc64el 3.7.0-0.3 [258 kB]
168s Get:215 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmunge2 ppc64el 0.5.15-3ubuntu1 [17.6 kB]
168s Get:216 http://ftpmaster.internal/ubuntu noble/main ppc64el libpciaccess0 ppc64el 0.17-3 [20.8 kB]
168s Get:217 http://ftpmaster.internal/ubuntu noble/main ppc64el libxnvctrl0 ppc64el 510.47.03-0ubuntu1 [11.7 kB]
168s Get:218 http://ftpmaster.internal/ubuntu noble/universe ppc64el ocl-icd-libopencl1 ppc64el 2.3.2-1 [41.7 kB]
168s Get:219 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhwloc-plugins ppc64el 2.10.0-1 [17.3 kB]
168s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libpmix2t64 ppc64el 5.0.1-4.1 [765 kB]
169s Get:221 http://ftpmaster.internal/ubuntu noble/universe ppc64el libucx0 ppc64el 1.16.0+ds-4 [1203 kB]
169s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libopenmpi3t64 ppc64el 4.1.6-5.1ubuntu4 [2721 kB]
169s Get:223 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29 [13.5 kB]
169s Get:224 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29 [8710 B]
169s Get:225 http://ftpmaster.internal/ubuntu noble/main ppc64el libnuma-dev ppc64el 2.0.18-1 [45.6 kB]
169s Get:226 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhwloc-dev ppc64el 2.10.0-1 [316 kB]
169s Get:227 http://ftpmaster.internal/ubuntu noble/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3ubuntu1 [902 kB]
169s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libpmix-dev ppc64el 5.0.1-4.1 [4143 kB]
169s Get:229 http://ftpmaster.internal/ubuntu noble/universe ppc64el libpstreams-dev all 1.0.3-1 [115 kB]
169s Get:230 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB]
170s Get:231 http://ftpmaster.internal/ubuntu noble/main ppc64el libterm-readkey-perl ppc64el 2.38-2build2 [24.7 kB]
170s Get:232 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtext-wrapper-perl all 1.05-4 [9820 B]
170s Get:233 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB]
170s Get:234 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B]
170s Get:235 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB]
170s Get:236 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6 ppc64el 1:1.2.1-1.1 [198 kB]
170s Get:237 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13 [192 kB]
170s Get:238 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu3 [192 kB]
170s Get:239 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
170s Get:240 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-core ppc64el 4.3.2-1build1 [27.4 MB]
172s Get:241 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-gtools ppc64el 3.9.5-1 [340 kB]
172s Get:242 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-bitops ppc64el 1.0-7-1 [30.0 kB]
172s Get:243 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-catools ppc64el 1.18.2-1 [209 kB]
172s Get:244 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-mass ppc64el 7.3-60.0.1-1 [1126 kB]
173s Get:245 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-kernsmooth ppc64el 2.23-22-1 [94.6 kB]
173s Get:246 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-gdata all 3.0.0-1 [483 kB]
173s Get:247 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-gplots all 3.1.3.1-1 [589 kB]
173s Get:248 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rocr all 1.0-11-2build1 [446 kB]
173s Get:249 http://ftpmaster.internal/ubuntu noble/universe ppc64el murasaki-common all 1.68.6-13build4 [146 kB]
173s Get:250 http://ftpmaster.internal/ubuntu noble/universe ppc64el murasaki ppc64el 1.68.6-13build4 [709 kB]
173s Get:251 http://ftpmaster.internal/ubuntu noble/universe ppc64el murasaki-mpi ppc64el 1.68.6-13build4 [842 kB]
173s Get:252 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el openmpi-common all 4.1.6-5.1ubuntu4 [170 kB]
173s Get:253 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el openmpi-bin ppc64el 4.1.6-5.1ubuntu4 [118 kB]
173s Get:254 http://ftpmaster.internal/ubuntu noble/main ppc64el libibverbs-dev ppc64el 50.0-2 [743 kB]
173s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libopenmpi-dev ppc64el 4.1.6-5.1ubuntu4 [866 kB]
174s Preconfiguring packages ...
174s Fetched 243 MB in 13s (18.4 MB/s)
174s Selecting previously unselected package libgomp1:ppc64el.
174s (Reading database ... 
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70095 files and directories currently installed.)
174s Preparing to unpack .../000-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ...
174s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ...
174s Selecting previously unselected package libfftw3-double3:ppc64el.
174s Preparing to unpack .../001-libfftw3-double3_3.3.10-1ubuntu1_ppc64el.deb ...
174s Unpacking libfftw3-double3:ppc64el (3.3.10-1ubuntu1) ...
174s Selecting previously unselected package fonts-dejavu-mono.
174s Preparing to unpack .../002-fonts-dejavu-mono_2.37-8_all.deb ...
174s Unpacking fonts-dejavu-mono (2.37-8) ...
174s Selecting previously unselected package fonts-dejavu-core.
174s Preparing to unpack .../003-fonts-dejavu-core_2.37-8_all.deb ...
174s Unpacking fonts-dejavu-core (2.37-8) ...
174s Selecting previously unselected package fontconfig-config.
174s Preparing to unpack .../004-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ...
174s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
174s Selecting previously unselected package libfontconfig1:ppc64el.
174s Preparing to unpack .../005-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ...
174s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
174s Selecting previously unselected package libsharpyuv0:ppc64el.
174s Preparing to unpack .../006-libsharpyuv0_1.3.2-0.4_ppc64el.deb ...
174s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ...
174s Selecting previously unselected package libdav1d7:ppc64el.
174s Preparing to unpack .../007-libdav1d7_1.4.0-1_ppc64el.deb ...
174s Unpacking libdav1d7:ppc64el (1.4.0-1) ...
174s Selecting previously unselected package libheif-plugin-dav1d:ppc64el.
174s Preparing to unpack .../008-libheif-plugin-dav1d_1.17.6-1ubuntu1_ppc64el.deb ...
174s Unpacking libheif-plugin-dav1d:ppc64el (1.17.6-1ubuntu1) ...
174s Selecting previously unselected package libde265-0:ppc64el.
174s Preparing to unpack .../009-libde265-0_1.0.15-1_ppc64el.deb ...
174s Unpacking libde265-0:ppc64el (1.0.15-1) ...
174s Selecting previously unselected package libheif-plugin-libde265:ppc64el.
174s Preparing to unpack .../010-libheif-plugin-libde265_1.17.6-1ubuntu1_ppc64el.deb ...
174s Unpacking libheif-plugin-libde265:ppc64el (1.17.6-1ubuntu1) ...
174s Selecting previously unselected package libheif1:ppc64el.
174s Preparing to unpack .../011-libheif1_1.17.6-1ubuntu1_ppc64el.deb ...
174s Unpacking libheif1:ppc64el (1.17.6-1ubuntu1) ...
174s Selecting previously unselected package libjbig0:ppc64el.
174s Preparing to unpack .../012-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ...
174s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ...
174s Selecting previously unselected package libjpeg-turbo8:ppc64el.
174s Preparing to unpack .../013-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ...
174s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
174s Selecting previously unselected package libjpeg8:ppc64el.
174s Preparing to unpack .../014-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
174s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
174s Selecting previously unselected package liblcms2-2:ppc64el.
174s Preparing to unpack .../015-liblcms2-2_2.14-2_ppc64el.deb ...
174s Unpacking liblcms2-2:ppc64el (2.14-2) ...
174s Selecting previously unselected package liblqr-1-0:ppc64el.
174s Preparing to unpack .../016-liblqr-1-0_0.4.2-2.1_ppc64el.deb ...
174s Unpacking liblqr-1-0:ppc64el (0.4.2-2.1) ...
174s Selecting previously unselected package libltdl7:ppc64el.
174s Preparing to unpack .../017-libltdl7_2.4.7-7_ppc64el.deb ...
174s Unpacking libltdl7:ppc64el (2.4.7-7) ...
174s Selecting previously unselected package libopenjp2-7:ppc64el.
174s Preparing to unpack .../018-libopenjp2-7_2.5.0-2_ppc64el.deb ...
174s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ...
174s Selecting previously unselected package libraw23:ppc64el.
174s Preparing to unpack .../019-libraw23_0.21.2-2_ppc64el.deb ...
174s Unpacking libraw23:ppc64el (0.21.2-2) ...
174s Selecting previously unselected package libdeflate0:ppc64el.
174s Preparing to unpack .../020-libdeflate0_1.19-1_ppc64el.deb ...
174s Unpacking libdeflate0:ppc64el (1.19-1) ...
174s Selecting previously unselected package liblerc4:ppc64el.
174s Preparing to unpack .../021-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ...
174s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
174s Selecting previously unselected package libwebp7:ppc64el.
174s Preparing to unpack .../022-libwebp7_1.3.2-0.4_ppc64el.deb ...
174s Unpacking libwebp7:ppc64el (1.3.2-0.4) ...
174s Selecting previously unselected package libtiff6:ppc64el.
174s Preparing to unpack .../023-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ...
174s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
174s Selecting previously unselected package libwebpdemux2:ppc64el.
174s Preparing to unpack .../024-libwebpdemux2_1.3.2-0.4_ppc64el.deb ...
174s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ...
174s Selecting previously unselected package libwebpmux3:ppc64el.
174s Preparing to unpack .../025-libwebpmux3_1.3.2-0.4_ppc64el.deb ...
174s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ...
174s Selecting previously unselected package imagemagick-6-common.
174s Preparing to unpack .../026-imagemagick-6-common_8%3a6.9.12.98+dfsg1-5_all.deb ...
174s Unpacking imagemagick-6-common (8:6.9.12.98+dfsg1-5) ...
174s Selecting previously unselected package libmagickcore-6.q16-7:ppc64el.
174s Preparing to unpack .../027-libmagickcore-6.q16-7_8%3a6.9.12.98+dfsg1-5_ppc64el.deb ...
174s Unpacking libmagickcore-6.q16-7:ppc64el (8:6.9.12.98+dfsg1-5) ...
174s Selecting previously unselected package libmagickwand-6.q16-7:ppc64el.
174s Preparing to unpack .../028-libmagickwand-6.q16-7_8%3a6.9.12.98+dfsg1-5_ppc64el.deb ...
174s Unpacking libmagickwand-6.q16-7:ppc64el (8:6.9.12.98+dfsg1-5) ...
175s Selecting previously unselected package libgdk-pixbuf2.0-common.
175s Preparing to unpack .../029-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ...
175s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
175s Selecting previously unselected package libgdk-pixbuf-2.0-0:ppc64el.
175s Preparing to unpack .../030-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_ppc64el.deb ...
175s Unpacking libgdk-pixbuf-2.0-0:ppc64el (2.42.10+dfsg-3) ...
175s Selecting previously unselected package gtk-update-icon-cache.
175s Preparing to unpack .../031-gtk-update-icon-cache_3.24.40-2ubuntu1_ppc64el.deb ...
175s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ...
175s Selecting previously unselected package hicolor-icon-theme.
175s Preparing to unpack .../032-hicolor-icon-theme_0.17-2_all.deb ...
175s Unpacking hicolor-icon-theme (0.17-2) ...
175s Selecting previously unselected package humanity-icon-theme.
175s Preparing to unpack .../033-humanity-icon-theme_0.6.16_all.deb ...
175s Unpacking humanity-icon-theme (0.6.16) ...
175s Selecting previously unselected package ubuntu-mono.
175s Preparing to unpack .../034-ubuntu-mono_24.04-0ubuntu1_all.deb ...
175s Unpacking ubuntu-mono (24.04-0ubuntu1) ...
176s Selecting previously unselected package adwaita-icon-theme.
176s Preparing to unpack .../035-adwaita-icon-theme_46~rc-1_all.deb ...
176s Unpacking adwaita-icon-theme (46~rc-1) ...
176s Selecting previously unselected package at-spi2-common.
176s Preparing to unpack .../036-at-spi2-common_2.50.0-1_all.deb ...
176s Unpacking at-spi2-common (2.50.0-1) ...
176s Selecting previously unselected package m4.
176s Preparing to unpack .../037-m4_1.4.19-4_ppc64el.deb ...
176s Unpacking m4 (1.4.19-4) ...
176s Selecting previously unselected package autoconf.
176s Preparing to unpack .../038-autoconf_2.71-3_all.deb ...
176s Unpacking autoconf (2.71-3) ...
176s Selecting previously unselected package autotools-dev.
176s Preparing to unpack .../039-autotools-dev_20220109.1_all.deb ...
176s Unpacking autotools-dev (20220109.1) ...
176s Selecting previously unselected package automake.
176s Preparing to unpack .../040-automake_1%3a1.16.5-1.3ubuntu1_all.deb ...
176s Unpacking automake (1:1.16.5-1.3ubuntu1) ...
176s Selecting previously unselected package libisl23:ppc64el.
176s Preparing to unpack .../041-libisl23_0.26-3_ppc64el.deb ...
176s Unpacking libisl23:ppc64el (0.26-3) ...
176s Selecting previously unselected package libmpc3:ppc64el.
176s Preparing to unpack .../042-libmpc3_1.3.1-1_ppc64el.deb ...
176s Unpacking libmpc3:ppc64el (1.3.1-1) ...
176s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu.
176s Preparing to unpack .../043-cpp-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ...
176s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
176s Selecting previously unselected package libdconf1:ppc64el.
176s Preparing to unpack .../044-libdconf1_0.40.0-4_ppc64el.deb ...
176s Unpacking libdconf1:ppc64el (0.40.0-4) ...
177s Selecting previously unselected package dconf-service.
177s Preparing to unpack .../045-dconf-service_0.40.0-4_ppc64el.deb ...
177s Unpacking dconf-service (0.40.0-4) ...
177s Selecting previously unselected package dconf-gsettings-backend:ppc64el.
177s Preparing to unpack .../046-dconf-gsettings-backend_0.40.0-4_ppc64el.deb ...
177s Unpacking dconf-gsettings-backend:ppc64el (0.40.0-4) ...
177s Selecting previously unselected package fontconfig.
177s Preparing to unpack .../047-fontconfig_2.15.0-1ubuntu1_ppc64el.deb ...
177s Unpacking fontconfig (2.15.0-1ubuntu1) ...
177s Selecting previously unselected package libcc1-0:ppc64el.
177s Preparing to unpack .../048-libcc1-0_14-20240303-1ubuntu1_ppc64el.deb ...
177s Unpacking libcc1-0:ppc64el (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libitm1:ppc64el.
177s Preparing to unpack .../049-libitm1_14-20240303-1ubuntu1_ppc64el.deb ...
177s Unpacking libitm1:ppc64el (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libatomic1:ppc64el.
177s Preparing to unpack .../050-libatomic1_14-20240303-1ubuntu1_ppc64el.deb ...
177s Unpacking libatomic1:ppc64el (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libasan8:ppc64el.
177s Preparing to unpack .../051-libasan8_14-20240303-1ubuntu1_ppc64el.deb ...
177s Unpacking libasan8:ppc64el (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package liblsan0:ppc64el.
177s Preparing to unpack .../052-liblsan0_14-20240303-1ubuntu1_ppc64el.deb ...
177s Unpacking liblsan0:ppc64el (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libtsan2:ppc64el.
177s Preparing to unpack .../053-libtsan2_14-20240303-1ubuntu1_ppc64el.deb ...
177s Unpacking libtsan2:ppc64el (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libubsan1:ppc64el.
177s Preparing to unpack .../054-libubsan1_14-20240303-1ubuntu1_ppc64el.deb ...
177s Unpacking libubsan1:ppc64el (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libquadmath0:ppc64el.
177s Preparing to unpack .../055-libquadmath0_14-20240303-1ubuntu1_ppc64el.deb ...
177s Unpacking libquadmath0:ppc64el (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libgcc-13-dev:ppc64el.
177s Preparing to unpack .../056-libgcc-13-dev_13.2.0-17ubuntu2_ppc64el.deb ...
177s Unpacking libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ...
177s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu.
177s Preparing to unpack .../057-gcc-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ...
177s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
177s Selecting previously unselected package gcc-13.
177s Preparing to unpack .../058-gcc-13_13.2.0-17ubuntu2_ppc64el.deb ...
177s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
177s Selecting previously unselected package libgfortran5:ppc64el.
177s Preparing to unpack .../059-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ...
177s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
178s Selecting previously unselected package libgfortran-13-dev:ppc64el.
178s Preparing to unpack .../060-libgfortran-13-dev_13.2.0-17ubuntu2_ppc64el.deb ...
178s Unpacking libgfortran-13-dev:ppc64el (13.2.0-17ubuntu2) ...
178s Selecting previously unselected package libc-dev-bin.
178s Preparing to unpack .../061-libc-dev-bin_2.39-0ubuntu2_ppc64el.deb ...
178s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
178s Selecting previously unselected package linux-libc-dev:ppc64el.
178s Preparing to unpack .../062-linux-libc-dev_6.8.0-11.11_ppc64el.deb ...
178s Unpacking linux-libc-dev:ppc64el (6.8.0-11.11) ...
178s Selecting previously unselected package libcrypt-dev:ppc64el.
178s Preparing to unpack .../063-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ...
178s Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) ...
178s Selecting previously unselected package libtirpc-dev:ppc64el.
178s Preparing to unpack .../064-libtirpc-dev_1.3.4+ds-1build1_ppc64el.deb ...
178s Unpacking libtirpc-dev:ppc64el (1.3.4+ds-1build1) ...
178s Selecting previously unselected package libnsl-dev:ppc64el.
178s Preparing to unpack .../065-libnsl-dev_1.3.0-3_ppc64el.deb ...
178s Unpacking libnsl-dev:ppc64el (1.3.0-3) ...
178s Selecting previously unselected package rpcsvc-proto.
178s Preparing to unpack .../066-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ...
178s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
178s Selecting previously unselected package libc6-dev:ppc64el.
178s Preparing to unpack .../067-libc6-dev_2.39-0ubuntu2_ppc64el.deb ...
178s Unpacking libc6-dev:ppc64el (2.39-0ubuntu2) ...
178s Selecting previously unselected package gfortran-13-powerpc64le-linux-gnu.
178s Preparing to unpack .../068-gfortran-13-powerpc64le-linux-gnu_13.2.0-17ubuntu2_ppc64el.deb ...
178s Unpacking gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
178s Selecting previously unselected package gfortran-13.
178s Preparing to unpack .../069-gfortran-13_13.2.0-17ubuntu2_ppc64el.deb ...
178s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
178s Selecting previously unselected package aglfn.
178s Preparing to unpack .../070-aglfn_1.7+git20191031.4036a9c-2_all.deb ...
178s Unpacking aglfn (1.7+git20191031.4036a9c-2) ...
178s Selecting previously unselected package gnuplot-data.
178s Preparing to unpack .../071-gnuplot-data_5.4.4+dfsg1-2build1_all.deb ...
178s Unpacking gnuplot-data (5.4.4+dfsg1-2build1) ...
178s Selecting previously unselected package libpixman-1-0:ppc64el.
178s Preparing to unpack .../072-libpixman-1-0_0.42.2-1_ppc64el.deb ...
178s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ...
178s Selecting previously unselected package libxcb-render0:ppc64el.
178s Preparing to unpack .../073-libxcb-render0_1.15-1_ppc64el.deb ...
178s Unpacking libxcb-render0:ppc64el (1.15-1) ...
178s Selecting previously unselected package libxcb-shm0:ppc64el.
178s Preparing to unpack .../074-libxcb-shm0_1.15-1_ppc64el.deb ...
178s Unpacking libxcb-shm0:ppc64el (1.15-1) ...
178s Selecting previously unselected package libxrender1:ppc64el.
178s Preparing to unpack .../075-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ...
178s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ...
178s Selecting previously unselected package libcairo2:ppc64el.
178s Preparing to unpack .../076-libcairo2_1.18.0-1_ppc64el.deb ...
178s Unpacking libcairo2:ppc64el (1.18.0-1) ...
178s Selecting previously unselected package libxpm4:ppc64el.
178s Preparing to unpack .../077-libxpm4_1%3a3.5.17-1_ppc64el.deb ...
178s Unpacking libxpm4:ppc64el (1:3.5.17-1) ...
178s Selecting previously unselected package libgd3:ppc64el.
178s Preparing to unpack .../078-libgd3_2.3.3-9ubuntu1_ppc64el.deb ...
178s Unpacking libgd3:ppc64el (2.3.3-9ubuntu1) ...
178s Selecting previously unselected package liblua5.4-0:ppc64el.
178s Preparing to unpack .../079-liblua5.4-0_5.4.6-3_ppc64el.deb ...
178s Unpacking liblua5.4-0:ppc64el (5.4.6-3) ...
178s Selecting previously unselected package libgraphite2-3:ppc64el.
178s Preparing to unpack .../080-libgraphite2-3_1.3.14-2_ppc64el.deb ...
178s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ...
178s Selecting previously unselected package libharfbuzz0b:ppc64el.
178s Preparing to unpack .../081-libharfbuzz0b_8.3.0-2_ppc64el.deb ...
178s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ...
178s Selecting previously unselected package libthai-data.
178s Preparing to unpack .../082-libthai-data_0.1.29-2_all.deb ...
179s Unpacking libthai-data (0.1.29-2) ...
179s Selecting previously unselected package libdatrie1:ppc64el.
179s Preparing to unpack .../083-libdatrie1_0.2.13-3_ppc64el.deb ...
179s Unpacking libdatrie1:ppc64el (0.2.13-3) ...
179s Selecting previously unselected package libthai0:ppc64el.
179s Preparing to unpack .../084-libthai0_0.1.29-2_ppc64el.deb ...
179s Unpacking libthai0:ppc64el (0.1.29-2) ...
179s Selecting previously unselected package libpango-1.0-0:ppc64el.
179s Preparing to unpack .../085-libpango-1.0-0_1.51.0+ds-4_ppc64el.deb ...
179s Unpacking libpango-1.0-0:ppc64el (1.51.0+ds-4) ...
179s Selecting previously unselected package libpangoft2-1.0-0:ppc64el.
179s Preparing to unpack .../086-libpangoft2-1.0-0_1.51.0+ds-4_ppc64el.deb ...
179s Unpacking libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ...
179s Selecting previously unselected package libpangocairo-1.0-0:ppc64el.
179s Preparing to unpack .../087-libpangocairo-1.0-0_1.51.0+ds-4_ppc64el.deb ...
179s Unpacking libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ...
179s Selecting previously unselected package libdouble-conversion3:ppc64el.
179s Preparing to unpack .../088-libdouble-conversion3_3.3.0-1_ppc64el.deb ...
179s Unpacking libdouble-conversion3:ppc64el (3.3.0-1) ...
179s Selecting previously unselected package libpcre2-16-0:ppc64el.
179s Preparing to unpack .../089-libpcre2-16-0_10.42-4ubuntu1_ppc64el.deb ...
179s Unpacking libpcre2-16-0:ppc64el (10.42-4ubuntu1) ...
179s Selecting previously unselected package libqt5core5a:ppc64el.
179s Preparing to unpack .../090-libqt5core5a_5.15.12+dfsg-3ubuntu1_ppc64el.deb ...
179s Unpacking libqt5core5a:ppc64el (5.15.12+dfsg-3ubuntu1) ...
179s Selecting previously unselected package libglvnd0:ppc64el.
179s Preparing to unpack .../091-libglvnd0_1.7.0-1_ppc64el.deb ...
179s Unpacking libglvnd0:ppc64el (1.7.0-1) ...
179s Selecting previously unselected package libwayland-server0:ppc64el.
179s Preparing to unpack .../092-libwayland-server0_1.22.0-2.1_ppc64el.deb ...
179s Unpacking libwayland-server0:ppc64el (1.22.0-2.1) ...
179s Selecting previously unselected package libxcb-randr0:ppc64el.
179s Preparing to unpack .../093-libxcb-randr0_1.15-1_ppc64el.deb ...
179s Unpacking libxcb-randr0:ppc64el (1.15-1) ...
179s Selecting previously unselected package libgbm1:ppc64el.
179s Preparing to unpack .../094-libgbm1_24.0.1-1ubuntu1_ppc64el.deb ...
179s Unpacking libgbm1:ppc64el (24.0.1-1ubuntu1) ...
179s Selecting previously unselected package libglapi-mesa:ppc64el.
179s Preparing to unpack .../095-libglapi-mesa_24.0.1-1ubuntu1_ppc64el.deb ...
179s Unpacking libglapi-mesa:ppc64el (24.0.1-1ubuntu1) ...
179s Selecting previously unselected package libwayland-client0:ppc64el.
179s Preparing to unpack .../096-libwayland-client0_1.22.0-2.1_ppc64el.deb ...
179s Unpacking libwayland-client0:ppc64el (1.22.0-2.1) ...
179s Selecting previously unselected package libx11-xcb1:ppc64el.
179s Preparing to unpack .../097-libx11-xcb1_2%3a1.8.7-1_ppc64el.deb ...
179s Unpacking libx11-xcb1:ppc64el (2:1.8.7-1) ...
179s Selecting previously unselected package libxcb-dri2-0:ppc64el.
179s Preparing to unpack .../098-libxcb-dri2-0_1.15-1_ppc64el.deb ...
179s Unpacking libxcb-dri2-0:ppc64el (1.15-1) ...
179s Selecting previously unselected package libxcb-dri3-0:ppc64el.
179s Preparing to unpack .../099-libxcb-dri3-0_1.15-1_ppc64el.deb ...
179s Unpacking libxcb-dri3-0:ppc64el (1.15-1) ...
179s Selecting previously unselected package libxcb-present0:ppc64el.
179s Preparing to unpack .../100-libxcb-present0_1.15-1_ppc64el.deb ...
179s Unpacking libxcb-present0:ppc64el (1.15-1) ...
179s Selecting previously unselected package libxcb-sync1:ppc64el.
179s Preparing to unpack .../101-libxcb-sync1_1.15-1_ppc64el.deb ...
179s Unpacking libxcb-sync1:ppc64el (1.15-1) ...
179s Selecting previously unselected package libxcb-xfixes0:ppc64el.
179s Preparing to unpack .../102-libxcb-xfixes0_1.15-1_ppc64el.deb ...
179s Unpacking libxcb-xfixes0:ppc64el (1.15-1) ...
179s Selecting previously unselected package libxshmfence1:ppc64el.
179s Preparing to unpack .../103-libxshmfence1_1.3-1build4_ppc64el.deb ...
179s Unpacking libxshmfence1:ppc64el (1.3-1build4) ...
179s Selecting previously unselected package libegl-mesa0:ppc64el.
179s Preparing to unpack .../104-libegl-mesa0_24.0.1-1ubuntu1_ppc64el.deb ...
179s Unpacking libegl-mesa0:ppc64el (24.0.1-1ubuntu1) ...
179s Selecting previously unselected package libegl1:ppc64el.
179s Preparing to unpack .../105-libegl1_1.7.0-1_ppc64el.deb ...
179s Unpacking libegl1:ppc64el (1.7.0-1) ...
179s Selecting previously unselected package libxcb-glx0:ppc64el.
179s Preparing to unpack .../106-libxcb-glx0_1.15-1_ppc64el.deb ...
179s Unpacking libxcb-glx0:ppc64el (1.15-1) ...
179s Selecting previously unselected package libxfixes3:ppc64el.
179s Preparing to unpack .../107-libxfixes3_1%3a6.0.0-2_ppc64el.deb ...
179s Unpacking libxfixes3:ppc64el (1:6.0.0-2) ...
179s Selecting previously unselected package libxxf86vm1:ppc64el.
179s Preparing to unpack .../108-libxxf86vm1_1%3a1.1.4-1build3_ppc64el.deb ...
179s Unpacking libxxf86vm1:ppc64el (1:1.1.4-1build3) ...
179s Selecting previously unselected package libvulkan1:ppc64el.
179s Preparing to unpack .../109-libvulkan1_1.3.275.0-1_ppc64el.deb ...
179s Unpacking libvulkan1:ppc64el (1.3.275.0-1) ...
179s Selecting previously unselected package libdrm-amdgpu1:ppc64el.
179s Preparing to unpack .../110-libdrm-amdgpu1_2.4.120-2_ppc64el.deb ...
179s Unpacking libdrm-amdgpu1:ppc64el (2.4.120-2) ...
179s Selecting previously unselected package libdrm-nouveau2:ppc64el.
179s Preparing to unpack .../111-libdrm-nouveau2_2.4.120-2_ppc64el.deb ...
179s Unpacking libdrm-nouveau2:ppc64el (2.4.120-2) ...
179s Selecting previously unselected package libdrm-radeon1:ppc64el.
179s Preparing to unpack .../112-libdrm-radeon1_2.4.120-2_ppc64el.deb ...
179s Unpacking libdrm-radeon1:ppc64el (2.4.120-2) ...
179s Selecting previously unselected package libllvm17:ppc64el.
179s Preparing to unpack .../113-libllvm17_1%3a17.0.6-5build1_ppc64el.deb ...
179s Unpacking libllvm17:ppc64el (1:17.0.6-5build1) ...
180s Selecting previously unselected package libgl1-mesa-dri:ppc64el.
180s Preparing to unpack .../114-libgl1-mesa-dri_24.0.1-1ubuntu1_ppc64el.deb ...
180s Unpacking libgl1-mesa-dri:ppc64el (24.0.1-1ubuntu1) ...
180s Selecting previously unselected package libglx-mesa0:ppc64el.
180s Preparing to unpack .../115-libglx-mesa0_24.0.1-1ubuntu1_ppc64el.deb ...
180s Unpacking libglx-mesa0:ppc64el (24.0.1-1ubuntu1) ...
180s Selecting previously unselected package libglx0:ppc64el.
180s Preparing to unpack .../116-libglx0_1.7.0-1_ppc64el.deb ...
180s Unpacking libglx0:ppc64el (1.7.0-1) ...
180s Selecting previously unselected package libgl1:ppc64el.
180s Preparing to unpack .../117-libgl1_1.7.0-1_ppc64el.deb ...
180s Unpacking libgl1:ppc64el (1.7.0-1) ...
180s Selecting previously unselected package x11-common.
180s Preparing to unpack .../118-x11-common_1%3a7.7+23ubuntu2_all.deb ...
180s Unpacking x11-common (1:7.7+23ubuntu2) ...
180s Selecting previously unselected package libice6:ppc64el.
180s Preparing to unpack .../119-libice6_2%3a1.0.10-1build2_ppc64el.deb ...
180s Unpacking libice6:ppc64el (2:1.0.10-1build2) ...
180s Selecting previously unselected package libmtdev1:ppc64el.
180s Preparing to unpack .../120-libmtdev1_1.1.6-1build4_ppc64el.deb ...
180s Unpacking libmtdev1:ppc64el (1.1.6-1build4) ...
180s Selecting previously unselected package libwacom-common.
180s Preparing to unpack .../121-libwacom-common_2.10.0-1_all.deb ...
180s Unpacking libwacom-common (2.10.0-1) ...
180s Selecting previously unselected package libwacom9:ppc64el.
180s Preparing to unpack .../122-libwacom9_2.10.0-1_ppc64el.deb ...
180s Unpacking libwacom9:ppc64el (2.10.0-1) ...
180s Selecting previously unselected package libinput-bin.
180s Preparing to unpack .../123-libinput-bin_1.25.0-1_ppc64el.deb ...
180s Unpacking libinput-bin (1.25.0-1) ...
180s Selecting previously unselected package libinput10:ppc64el.
180s Preparing to unpack .../124-libinput10_1.25.0-1_ppc64el.deb ...
180s Unpacking libinput10:ppc64el (1.25.0-1) ...
180s Selecting previously unselected package libmd4c0:ppc64el.
180s Preparing to unpack .../125-libmd4c0_0.4.8-1_ppc64el.deb ...
180s Unpacking libmd4c0:ppc64el (0.4.8-1) ...
180s Selecting previously unselected package libqt5dbus5:ppc64el.
180s Preparing to unpack .../126-libqt5dbus5_5.15.12+dfsg-3ubuntu1_ppc64el.deb ...
180s Unpacking libqt5dbus5:ppc64el (5.15.12+dfsg-3ubuntu1) ...
180s Selecting previously unselected package libqt5network5:ppc64el.
180s Preparing to unpack .../127-libqt5network5_5.15.12+dfsg-3ubuntu1_ppc64el.deb ...
180s Unpacking libqt5network5:ppc64el (5.15.12+dfsg-3ubuntu1) ...
180s Selecting previously unselected package libsm6:ppc64el.
180s Preparing to unpack .../128-libsm6_2%3a1.2.3-1build2_ppc64el.deb ...
180s Unpacking libsm6:ppc64el (2:1.2.3-1build2) ...
180s Selecting previously unselected package libxcb-icccm4:ppc64el.
180s Preparing to unpack .../129-libxcb-icccm4_0.4.1-1.1build2_ppc64el.deb ...
180s Unpacking libxcb-icccm4:ppc64el (0.4.1-1.1build2) ...
180s Selecting previously unselected package libxcb-util1:ppc64el.
180s Preparing to unpack .../130-libxcb-util1_0.4.0-1build2_ppc64el.deb ...
180s Unpacking libxcb-util1:ppc64el (0.4.0-1build2) ...
181s Selecting previously unselected package libxcb-image0:ppc64el.
181s Preparing to unpack .../131-libxcb-image0_0.4.0-2_ppc64el.deb ...
181s Unpacking libxcb-image0:ppc64el (0.4.0-2) ...
181s Selecting previously unselected package libxcb-keysyms1:ppc64el.
181s Preparing to unpack .../132-libxcb-keysyms1_0.4.0-1build3_ppc64el.deb ...
181s Unpacking libxcb-keysyms1:ppc64el (0.4.0-1build3) ...
181s Selecting previously unselected package libxcb-render-util0:ppc64el.
181s Preparing to unpack .../133-libxcb-render-util0_0.3.9-1build3_ppc64el.deb ...
181s Unpacking libxcb-render-util0:ppc64el (0.3.9-1build3) ...
181s Selecting previously unselected package libxcb-shape0:ppc64el.
181s Preparing to unpack .../134-libxcb-shape0_1.15-1_ppc64el.deb ...
181s Unpacking libxcb-shape0:ppc64el (1.15-1) ...
181s Selecting previously unselected package libxcb-xinerama0:ppc64el.
181s Preparing to unpack .../135-libxcb-xinerama0_1.15-1_ppc64el.deb ...
181s Unpacking libxcb-xinerama0:ppc64el (1.15-1) ...
181s Selecting previously unselected package libxcb-xinput0:ppc64el.
181s Preparing to unpack .../136-libxcb-xinput0_1.15-1_ppc64el.deb ...
181s Unpacking libxcb-xinput0:ppc64el (1.15-1) ...
181s Selecting previously unselected package libxcb-xkb1:ppc64el.
181s Preparing to unpack .../137-libxcb-xkb1_1.15-1_ppc64el.deb ...
181s Unpacking libxcb-xkb1:ppc64el (1.15-1) ...
181s Selecting previously unselected package libxkbcommon-x11-0:ppc64el.
181s Preparing to unpack .../138-libxkbcommon-x11-0_1.6.0-1_ppc64el.deb ...
181s Unpacking libxkbcommon-x11-0:ppc64el (1.6.0-1) ...
181s Selecting previously unselected package libqt5gui5:ppc64el.
181s Preparing to unpack .../139-libqt5gui5_5.15.12+dfsg-3ubuntu1_ppc64el.deb ...
181s Unpacking libqt5gui5:ppc64el (5.15.12+dfsg-3ubuntu1) ...
181s Selecting previously unselected package libavahi-common-data:ppc64el.
181s Preparing to unpack .../140-libavahi-common-data_0.8-13ubuntu2_ppc64el.deb ...
181s Unpacking libavahi-common-data:ppc64el (0.8-13ubuntu2) ...
181s Selecting previously unselected package libavahi-common3:ppc64el.
181s Preparing to unpack .../141-libavahi-common3_0.8-13ubuntu2_ppc64el.deb ...
181s Unpacking libavahi-common3:ppc64el (0.8-13ubuntu2) ...
181s Selecting previously unselected package libavahi-client3:ppc64el.
181s Preparing to unpack .../142-libavahi-client3_0.8-13ubuntu2_ppc64el.deb ...
181s Unpacking libavahi-client3:ppc64el (0.8-13ubuntu2) ...
181s Selecting previously unselected package libcups2:ppc64el.
181s Preparing to unpack .../143-libcups2_2.4.6-0ubuntu3_ppc64el.deb ...
181s Unpacking libcups2:ppc64el (2.4.6-0ubuntu3) ...
181s Selecting previously unselected package libqt5widgets5:ppc64el.
181s Preparing to unpack .../144-libqt5widgets5_5.15.12+dfsg-3ubuntu1_ppc64el.deb ...
181s Unpacking libqt5widgets5:ppc64el (5.15.12+dfsg-3ubuntu1) ...
181s Selecting previously unselected package libqt5printsupport5:ppc64el.
181s Preparing to unpack .../145-libqt5printsupport5_5.15.12+dfsg-3ubuntu1_ppc64el.deb ...
181s Unpacking libqt5printsupport5:ppc64el (5.15.12+dfsg-3ubuntu1) ...
181s Selecting previously unselected package libqt5svg5:ppc64el.
181s Preparing to unpack .../146-libqt5svg5_5.15.12-1_ppc64el.deb ...
181s Unpacking libqt5svg5:ppc64el (5.15.12-1) ...
181s Selecting previously unselected package libpcre2-32-0:ppc64el.
181s Preparing to unpack .../147-libpcre2-32-0_10.42-4ubuntu1_ppc64el.deb ...
181s Unpacking libpcre2-32-0:ppc64el (10.42-4ubuntu1) ...
181s Selecting previously unselected package libwxbase3.2-1:ppc64el.
181s Preparing to unpack .../148-libwxbase3.2-1_3.2.4+dfsg-3_ppc64el.deb ...
181s Unpacking libwxbase3.2-1:ppc64el (3.2.4+dfsg-3) ...
181s Selecting previously unselected package libatk1.0-0:ppc64el.
181s Preparing to unpack .../149-libatk1.0-0_2.50.0-1_ppc64el.deb ...
181s Unpacking libatk1.0-0:ppc64el (2.50.0-1) ...
181s Selecting previously unselected package libxi6:ppc64el.
181s Preparing to unpack .../150-libxi6_2%3a1.8.1-1_ppc64el.deb ...
181s Unpacking libxi6:ppc64el (2:1.8.1-1) ...
181s Selecting previously unselected package libatspi2.0-0:ppc64el.
181s Preparing to unpack .../151-libatspi2.0-0_2.50.0-1_ppc64el.deb ...
181s Unpacking libatspi2.0-0:ppc64el (2.50.0-1) ...
181s Selecting previously unselected package libatk-bridge2.0-0:ppc64el.
181s Preparing to unpack .../152-libatk-bridge2.0-0_2.50.0-1_ppc64el.deb ...
181s Unpacking libatk-bridge2.0-0:ppc64el (2.50.0-1) ...
181s Selecting previously unselected package libcairo-gobject2:ppc64el.
181s Preparing to unpack .../153-libcairo-gobject2_1.18.0-1_ppc64el.deb ...
181s Unpacking libcairo-gobject2:ppc64el (1.18.0-1) ...
181s Selecting previously unselected package libcolord2:ppc64el.
181s Preparing to unpack .../154-libcolord2_1.4.7-1_ppc64el.deb ...
181s Unpacking libcolord2:ppc64el (1.4.7-1) ...
181s Selecting previously unselected package libepoxy0:ppc64el.
181s Preparing to unpack .../155-libepoxy0_1.5.10-1_ppc64el.deb ...
181s Unpacking libepoxy0:ppc64el (1.5.10-1) ...
181s Selecting previously unselected package libwayland-cursor0:ppc64el.
181s Preparing to unpack .../156-libwayland-cursor0_1.22.0-2.1_ppc64el.deb ...
181s Unpacking libwayland-cursor0:ppc64el (1.22.0-2.1) ...
181s Selecting previously unselected package libwayland-egl1:ppc64el.
181s Preparing to unpack .../157-libwayland-egl1_1.22.0-2.1_ppc64el.deb ...
181s Unpacking libwayland-egl1:ppc64el (1.22.0-2.1) ...
181s Selecting previously unselected package libxcomposite1:ppc64el.
181s Preparing to unpack .../158-libxcomposite1_1%3a0.4.5-1build2_ppc64el.deb ...
181s Unpacking libxcomposite1:ppc64el (1:0.4.5-1build2) ...
181s Selecting previously unselected package libxcursor1:ppc64el.
181s Preparing to unpack .../159-libxcursor1_1%3a1.2.1-1_ppc64el.deb ...
181s Unpacking libxcursor1:ppc64el (1:1.2.1-1) ...
181s Selecting previously unselected package libxdamage1:ppc64el.
181s Preparing to unpack .../160-libxdamage1_1%3a1.1.6-1_ppc64el.deb ...
181s Unpacking libxdamage1:ppc64el (1:1.1.6-1) ...
181s Selecting previously unselected package libxinerama1:ppc64el.
181s Preparing to unpack .../161-libxinerama1_2%3a1.1.4-3_ppc64el.deb ...
181s Unpacking libxinerama1:ppc64el (2:1.1.4-3) ...
181s Selecting previously unselected package libxrandr2:ppc64el.
181s Preparing to unpack .../162-libxrandr2_2%3a1.5.2-2_ppc64el.deb ...
181s Unpacking libxrandr2:ppc64el (2:1.5.2-2) ...
181s Selecting previously unselected package libgtk-3-common.
181s Preparing to unpack .../163-libgtk-3-common_3.24.40-2ubuntu1_all.deb ...
181s Unpacking libgtk-3-common (3.24.40-2ubuntu1) ...
181s Selecting previously unselected package libgtk-3-0:ppc64el.
181s Preparing to unpack .../164-libgtk-3-0_3.24.40-2ubuntu1_ppc64el.deb ...
181s Unpacking libgtk-3-0:ppc64el (3.24.40-2ubuntu1) ...
181s Selecting previously unselected package libnotify4:ppc64el.
181s Preparing to unpack .../165-libnotify4_0.8.3-1_ppc64el.deb ...
181s Unpacking libnotify4:ppc64el (0.8.3-1) ...
181s Selecting previously unselected package libxtst6:ppc64el.
181s Preparing to unpack .../166-libxtst6_2%3a1.2.3-1.1_ppc64el.deb ...
181s Unpacking libxtst6:ppc64el (2:1.2.3-1.1) ...
181s Selecting previously unselected package libwxgtk3.2-1:ppc64el.
181s Preparing to unpack .../167-libwxgtk3.2-1_3.2.4+dfsg-3_ppc64el.deb ...
181s Unpacking libwxgtk3.2-1:ppc64el (3.2.4+dfsg-3) ...
182s Selecting previously unselected package gnuplot-qt.
182s Preparing to unpack .../168-gnuplot-qt_5.4.4+dfsg1-2build1_ppc64el.deb ...
182s Unpacking gnuplot-qt (5.4.4+dfsg1-2build1) ...
182s Selecting previously unselected package gnuplot.
182s Preparing to unpack .../169-gnuplot_5.4.4+dfsg1-2build1_all.deb ...
182s Unpacking gnuplot (5.4.4+dfsg1-2build1) ...
182s Selecting previously unselected package icu-devtools.
182s Preparing to unpack .../170-icu-devtools_74.2-1ubuntu1_ppc64el.deb ...
182s Unpacking icu-devtools (74.2-1ubuntu1) ...
182s Selecting previously unselected package imagemagick-6.q16.
182s Preparing to unpack .../171-imagemagick-6.q16_8%3a6.9.12.98+dfsg1-5_ppc64el.deb ...
182s Unpacking imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ...
182s Selecting previously unselected package imagemagick.
182s Preparing to unpack .../172-imagemagick_8%3a6.9.12.98+dfsg1-5_ppc64el.deb ...
182s Unpacking imagemagick (8:6.9.12.98+dfsg1-5) ...
182s Selecting previously unselected package libamd-comgr2:ppc64el.
182s Preparing to unpack .../173-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_ppc64el.deb ...
182s Unpacking libamd-comgr2:ppc64el (6.0+git20231212.4510c28+dfsg-3) ...
182s Selecting previously unselected package libhsakmt1:ppc64el.
182s Preparing to unpack .../174-libhsakmt1_5.7.0-1_ppc64el.deb ...
182s Unpacking libhsakmt1:ppc64el (5.7.0-1) ...
182s Selecting previously unselected package libhsa-runtime64-1.
182s Preparing to unpack .../175-libhsa-runtime64-1_5.7.1-1_ppc64el.deb ...
182s Unpacking libhsa-runtime64-1 (5.7.1-1) ...
182s Selecting previously unselected package libamdhip64-5.
182s Preparing to unpack .../176-libamdhip64-5_5.2.3-12_ppc64el.deb ...
182s Unpacking libamdhip64-5 (5.2.3-12) ...
182s Selecting previously unselected package libio-string-perl.
182s Preparing to unpack .../177-libio-string-perl_1.08-4_all.deb ...
182s Unpacking libio-string-perl (1.08-4) ...
182s Selecting previously unselected package libdata-stag-perl.
182s Preparing to unpack .../178-libdata-stag-perl_0.14-3_all.deb ...
182s Unpacking libdata-stag-perl (0.14-3) ...
182s Selecting previously unselected package libbio-perl-perl.
182s Preparing to unpack .../179-libbio-perl-perl_1.7.8-1_all.deb ...
182s Unpacking libbio-perl-perl (1.7.8-1) ...
183s Selecting previously unselected package libblas3:ppc64el.
183s Preparing to unpack .../180-libblas3_3.12.0-3_ppc64el.deb ...
183s Unpacking libblas3:ppc64el (3.12.0-3) ...
183s Selecting previously unselected package libstdc++-13-dev:ppc64el.
183s Preparing to unpack .../181-libstdc++-13-dev_13.2.0-17ubuntu2_ppc64el.deb ...
183s Unpacking libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ...
183s Selecting previously unselected package libboost1.83-dev:ppc64el.
183s Preparing to unpack .../182-libboost1.83-dev_1.83.0-2.1ubuntu2_ppc64el.deb ...
183s Unpacking libboost1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
186s Selecting previously unselected package libboost-atomic1.83.0:ppc64el.
186s Preparing to unpack .../183-libboost-atomic1.83.0_1.83.0-2.1ubuntu2_ppc64el.deb ...
186s Unpacking libboost-atomic1.83.0:ppc64el (1.83.0-2.1ubuntu2) ...
186s Selecting previously unselected package libboost-atomic1.83-dev:ppc64el.
186s Preparing to unpack .../184-libboost-atomic1.83-dev_1.83.0-2.1ubuntu2_ppc64el.deb ...
186s Unpacking libboost-atomic1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
186s Selecting previously unselected package libboost-filesystem1.83.0:ppc64el.
186s Preparing to unpack .../185-libboost-filesystem1.83.0_1.83.0-2.1ubuntu2_ppc64el.deb ...
186s Unpacking libboost-filesystem1.83.0:ppc64el (1.83.0-2.1ubuntu2) ...
186s Selecting previously unselected package libboost-system1.83.0:ppc64el.
186s Preparing to unpack .../186-libboost-system1.83.0_1.83.0-2.1ubuntu2_ppc64el.deb ...
186s Unpacking libboost-system1.83.0:ppc64el (1.83.0-2.1ubuntu2) ...
186s Selecting previously unselected package libboost-system1.83-dev:ppc64el.
186s Preparing to unpack .../187-libboost-system1.83-dev_1.83.0-2.1ubuntu2_ppc64el.deb ...
186s Unpacking libboost-system1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
186s Selecting previously unselected package libboost-filesystem1.83-dev:ppc64el.
186s Preparing to unpack .../188-libboost-filesystem1.83-dev_1.83.0-2.1ubuntu2_ppc64el.deb ...
186s Unpacking libboost-filesystem1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
186s Selecting previously unselected package libboost-filesystem-dev:ppc64el.
186s Preparing to unpack .../189-libboost-filesystem-dev_1.83.0.1ubuntu2_ppc64el.deb ...
186s Unpacking libboost-filesystem-dev:ppc64el (1.83.0.1ubuntu2) ...
186s Selecting previously unselected package libboost-regex1.83.0:ppc64el.
186s Preparing to unpack .../190-libboost-regex1.83.0_1.83.0-2.1ubuntu2_ppc64el.deb ...
186s Unpacking libboost-regex1.83.0:ppc64el (1.83.0-2.1ubuntu2) ...
186s Selecting previously unselected package libicu-dev:ppc64el.
186s Preparing to unpack .../191-libicu-dev_74.2-1ubuntu1_ppc64el.deb ...
186s Unpacking libicu-dev:ppc64el (74.2-1ubuntu1) ...
187s Selecting previously unselected package libboost-regex1.83-dev:ppc64el.
187s Preparing to unpack .../192-libboost-regex1.83-dev_1.83.0-2.1ubuntu2_ppc64el.deb ...
187s Unpacking libboost-regex1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
187s Selecting previously unselected package libboost-iostreams1.83.0:ppc64el.
187s Preparing to unpack .../193-libboost-iostreams1.83.0_1.83.0-2.1ubuntu2_ppc64el.deb ...
187s Unpacking libboost-iostreams1.83.0:ppc64el (1.83.0-2.1ubuntu2) ...
187s Selecting previously unselected package libboost-iostreams1.83-dev:ppc64el.
187s Preparing to unpack .../194-libboost-iostreams1.83-dev_1.83.0-2.1ubuntu2_ppc64el.deb ...
187s Unpacking libboost-iostreams1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
187s Selecting previously unselected package libboost-iostreams-dev:ppc64el.
187s Preparing to unpack .../195-libboost-iostreams-dev_1.83.0.1ubuntu2_ppc64el.deb ...
187s Unpacking libboost-iostreams-dev:ppc64el (1.83.0.1ubuntu2) ...
187s Selecting previously unselected package libboost-regex-dev:ppc64el.
187s Preparing to unpack .../196-libboost-regex-dev_1.83.0.1ubuntu2_ppc64el.deb ...
187s Unpacking libboost-regex-dev:ppc64el (1.83.0.1ubuntu2) ...
187s Selecting previously unselected package libcrypto++8t64:ppc64el.
187s Preparing to unpack .../197-libcrypto++8t64_8.9.0-1.1_ppc64el.deb ...
187s Unpacking libcrypto++8t64:ppc64el (8.9.0-1.1) ...
187s Selecting previously unselected package libcrypto++-dev:ppc64el.
187s Preparing to unpack .../198-libcrypto++-dev_8.9.0-1.1_ppc64el.deb ...
187s Unpacking libcrypto++-dev:ppc64el (8.9.0-1.1) ...
187s Selecting previously unselected package libevent-2.1-7:ppc64el.
187s Preparing to unpack .../199-libevent-2.1-7_2.1.12-stable-9_ppc64el.deb ...
187s Unpacking libevent-2.1-7:ppc64el (2.1.12-stable-9) ...
187s Selecting previously unselected package libevent-extra-2.1-7:ppc64el.
187s Preparing to unpack .../200-libevent-extra-2.1-7_2.1.12-stable-9_ppc64el.deb ...
187s Unpacking libevent-extra-2.1-7:ppc64el (2.1.12-stable-9) ...
187s Selecting previously unselected package libevent-pthreads-2.1-7:ppc64el.
187s Preparing to unpack .../201-libevent-pthreads-2.1-7_2.1.12-stable-9_ppc64el.deb ...
187s Unpacking libevent-pthreads-2.1-7:ppc64el (2.1.12-stable-9) ...
187s Selecting previously unselected package libevent-openssl-2.1-7:ppc64el.
187s Preparing to unpack .../202-libevent-openssl-2.1-7_2.1.12-stable-9_ppc64el.deb ...
187s Unpacking libevent-openssl-2.1-7:ppc64el (2.1.12-stable-9) ...
187s Selecting previously unselected package libevent-dev.
187s Preparing to unpack .../203-libevent-dev_2.1.12-stable-9_ppc64el.deb ...
187s Unpacking libevent-dev (2.1.12-stable-9) ...
187s Selecting previously unselected package librdmacm1t64:ppc64el.
187s Preparing to unpack .../204-librdmacm1t64_50.0-2_ppc64el.deb ...
187s Unpacking librdmacm1t64:ppc64el (50.0-2) ...
187s Selecting previously unselected package libfabric1:ppc64el.
187s Preparing to unpack .../205-libfabric1_1.17.0-3_ppc64el.deb ...
187s Unpacking libfabric1:ppc64el (1.17.0-3) ...
187s Selecting previously unselected package libhwloc15:ppc64el.
187s Preparing to unpack .../206-libhwloc15_2.10.0-1_ppc64el.deb ...
187s Unpacking libhwloc15:ppc64el (2.10.0-1) ...
187s Selecting previously unselected package libjs-jquery.
187s Preparing to unpack .../207-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
187s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
187s Selecting previously unselected package libjs-jquery-ui.
187s Preparing to unpack .../208-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
187s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
187s Selecting previously unselected package liblapack3:ppc64el.
187s Preparing to unpack .../209-liblapack3_3.12.0-3_ppc64el.deb ...
187s Unpacking liblapack3:ppc64el (3.12.0-3) ...
187s Selecting previously unselected package libltdl-dev:ppc64el.
187s Preparing to unpack .../210-libltdl-dev_2.4.7-7_ppc64el.deb ...
187s Unpacking libltdl-dev:ppc64el (2.4.7-7) ...
187s Selecting previously unselected package libnl-3-dev:ppc64el.
187s Preparing to unpack .../211-libnl-3-dev_3.7.0-0.3_ppc64el.deb ...
187s Unpacking libnl-3-dev:ppc64el (3.7.0-0.3) ...
187s Selecting previously unselected package libnl-route-3-dev:ppc64el.
187s Preparing to unpack .../212-libnl-route-3-dev_3.7.0-0.3_ppc64el.deb ...
187s Unpacking libnl-route-3-dev:ppc64el (3.7.0-0.3) ...
187s Selecting previously unselected package libmunge2:ppc64el.
187s Preparing to unpack .../213-libmunge2_0.5.15-3ubuntu1_ppc64el.deb ...
187s Unpacking libmunge2:ppc64el (0.5.15-3ubuntu1) ...
187s Selecting previously unselected package libpciaccess0:ppc64el.
187s Preparing to unpack .../214-libpciaccess0_0.17-3_ppc64el.deb ...
187s Unpacking libpciaccess0:ppc64el (0.17-3) ...
187s Selecting previously unselected package libxnvctrl0:ppc64el.
187s Preparing to unpack .../215-libxnvctrl0_510.47.03-0ubuntu1_ppc64el.deb ...
187s Unpacking libxnvctrl0:ppc64el (510.47.03-0ubuntu1) ...
187s Selecting previously unselected package ocl-icd-libopencl1:ppc64el.
187s Preparing to unpack .../216-ocl-icd-libopencl1_2.3.2-1_ppc64el.deb ...
187s Unpacking ocl-icd-libopencl1:ppc64el (2.3.2-1) ...
188s Selecting previously unselected package libhwloc-plugins:ppc64el.
188s Preparing to unpack .../217-libhwloc-plugins_2.10.0-1_ppc64el.deb ...
188s Unpacking libhwloc-plugins:ppc64el (2.10.0-1) ...
188s Selecting previously unselected package libpmix2t64:ppc64el.
188s Preparing to unpack .../218-libpmix2t64_5.0.1-4.1_ppc64el.deb ...
188s Unpacking libpmix2t64:ppc64el (5.0.1-4.1) ...
188s Selecting previously unselected package libucx0:ppc64el.
188s Preparing to unpack .../219-libucx0_1.16.0+ds-4_ppc64el.deb ...
188s Unpacking libucx0:ppc64el (1.16.0+ds-4) ...
188s Selecting previously unselected package libopenmpi3t64:ppc64el.
188s Preparing to unpack .../220-libopenmpi3t64_4.1.6-5.1ubuntu4_ppc64el.deb ...
188s Unpacking libopenmpi3t64:ppc64el (4.1.6-5.1ubuntu4) ...
188s Selecting previously unselected package libpaper1:ppc64el.
188s Preparing to unpack .../221-libpaper1_1.1.29_ppc64el.deb ...
188s Unpacking libpaper1:ppc64el (1.1.29) ...
188s Selecting previously unselected package libpaper-utils.
188s Preparing to unpack .../222-libpaper-utils_1.1.29_ppc64el.deb ...
188s Unpacking libpaper-utils (1.1.29) ...
188s Selecting previously unselected package libnuma-dev:ppc64el.
188s Preparing to unpack .../223-libnuma-dev_2.0.18-1_ppc64el.deb ...
188s Unpacking libnuma-dev:ppc64el (2.0.18-1) ...
188s Selecting previously unselected package libhwloc-dev:ppc64el.
188s Preparing to unpack .../224-libhwloc-dev_2.10.0-1_ppc64el.deb ...
188s Unpacking libhwloc-dev:ppc64el (2.10.0-1) ...
188s Selecting previously unselected package zlib1g-dev:ppc64el.
188s Preparing to unpack .../225-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_ppc64el.deb ...
188s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ...
188s Selecting previously unselected package libpmix-dev:ppc64el.
188s Preparing to unpack .../226-libpmix-dev_5.0.1-4.1_ppc64el.deb ...
188s Unpacking libpmix-dev:ppc64el (5.0.1-4.1) ...
188s Selecting previously unselected package libpstreams-dev.
188s Preparing to unpack .../227-libpstreams-dev_1.0.3-1_all.deb ...
188s Unpacking libpstreams-dev (1.0.3-1) ...
188s Selecting previously unselected package libtcl8.6:ppc64el.
188s Preparing to unpack .../228-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ...
188s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ...
188s Selecting previously unselected package libterm-readkey-perl.
188s Preparing to unpack .../229-libterm-readkey-perl_2.38-2build2_ppc64el.deb ...
188s Unpacking libterm-readkey-perl (2.38-2build2) ...
188s Selecting previously unselected package libtext-wrapper-perl.
188s Preparing to unpack .../230-libtext-wrapper-perl_1.05-4_all.deb ...
188s Unpacking libtext-wrapper-perl (1.05-4) ...
188s Selecting previously unselected package libxft2:ppc64el.
188s Preparing to unpack .../231-libxft2_2.3.6-1_ppc64el.deb ...
188s Unpacking libxft2:ppc64el (2.3.6-1) ...
188s Selecting previously unselected package libxss1:ppc64el.
188s Preparing to unpack .../232-libxss1_1%3a1.2.3-1build2_ppc64el.deb ...
188s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ...
188s Selecting previously unselected package libtk8.6:ppc64el.
188s Preparing to unpack .../233-libtk8.6_8.6.13-2_ppc64el.deb ...
188s Unpacking libtk8.6:ppc64el (8.6.13-2) ...
188s Selecting previously unselected package libxt6:ppc64el.
188s Preparing to unpack .../234-libxt6_1%3a1.2.1-1.1_ppc64el.deb ...
188s Unpacking libxt6:ppc64el (1:1.2.1-1.1) ...
188s Selecting previously unselected package zip.
188s Preparing to unpack .../235-zip_3.0-13_ppc64el.deb ...
188s Unpacking zip (3.0-13) ...
188s Selecting previously unselected package unzip.
188s Preparing to unpack .../236-unzip_6.0-28ubuntu3_ppc64el.deb ...
188s Unpacking unzip (6.0-28ubuntu3) ...
188s Selecting previously unselected package xdg-utils.
188s Preparing to unpack .../237-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
188s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
188s Selecting previously unselected package r-base-core.
188s Preparing to unpack .../238-r-base-core_4.3.2-1build1_ppc64el.deb ...
188s Unpacking r-base-core (4.3.2-1build1) ...
189s Selecting previously unselected package r-cran-gtools.
189s Preparing to unpack .../239-r-cran-gtools_3.9.5-1_ppc64el.deb ...
189s Unpacking r-cran-gtools (3.9.5-1) ...
189s Selecting previously unselected package r-cran-bitops.
189s Preparing to unpack .../240-r-cran-bitops_1.0-7-1_ppc64el.deb ...
189s Unpacking r-cran-bitops (1.0-7-1) ...
189s Selecting previously unselected package r-cran-catools.
189s Preparing to unpack .../241-r-cran-catools_1.18.2-1_ppc64el.deb ...
189s Unpacking r-cran-catools (1.18.2-1) ...
189s Selecting previously unselected package r-cran-mass.
189s Preparing to unpack .../242-r-cran-mass_7.3-60.0.1-1_ppc64el.deb ...
189s Unpacking r-cran-mass (7.3-60.0.1-1) ...
189s Selecting previously unselected package r-cran-kernsmooth.
189s Preparing to unpack .../243-r-cran-kernsmooth_2.23-22-1_ppc64el.deb ...
189s Unpacking r-cran-kernsmooth (2.23-22-1) ...
189s Selecting previously unselected package r-cran-gdata.
189s Preparing to unpack .../244-r-cran-gdata_3.0.0-1_all.deb ...
189s Unpacking r-cran-gdata (3.0.0-1) ...
189s Selecting previously unselected package r-cran-gplots.
189s Preparing to unpack .../245-r-cran-gplots_3.1.3.1-1_all.deb ...
189s Unpacking r-cran-gplots (3.1.3.1-1) ...
189s Selecting previously unselected package r-cran-rocr.
189s Preparing to unpack .../246-r-cran-rocr_1.0-11-2build1_all.deb ...
189s Unpacking r-cran-rocr (1.0-11-2build1) ...
189s Selecting previously unselected package murasaki-common.
189s Preparing to unpack .../247-murasaki-common_1.68.6-13build4_all.deb ...
189s Unpacking murasaki-common (1.68.6-13build4) ...
189s Selecting previously unselected package murasaki.
189s Preparing to unpack .../248-murasaki_1.68.6-13build4_ppc64el.deb ...
189s Unpacking murasaki (1.68.6-13build4) ...
189s Selecting previously unselected package murasaki-mpi.
189s Preparing to unpack .../249-murasaki-mpi_1.68.6-13build4_ppc64el.deb ...
189s Unpacking murasaki-mpi (1.68.6-13build4) ...
189s Selecting previously unselected package openmpi-common.
189s Preparing to unpack .../250-openmpi-common_4.1.6-5.1ubuntu4_all.deb ...
189s Unpacking openmpi-common (4.1.6-5.1ubuntu4) ...
189s Selecting previously unselected package openmpi-bin.
189s Preparing to unpack .../251-openmpi-bin_4.1.6-5.1ubuntu4_ppc64el.deb ...
189s Unpacking openmpi-bin (4.1.6-5.1ubuntu4) ...
189s Selecting previously unselected package libibverbs-dev:ppc64el.
189s Preparing to unpack .../252-libibverbs-dev_50.0-2_ppc64el.deb ...
189s Unpacking libibverbs-dev:ppc64el (50.0-2) ...
189s Selecting previously unselected package libopenmpi-dev:ppc64el.
189s Preparing to unpack .../253-libopenmpi-dev_4.1.6-5.1ubuntu4_ppc64el.deb ...
189s Unpacking libopenmpi-dev:ppc64el (4.1.6-5.1ubuntu4) ...
190s Selecting previously unselected package autopkgtest-satdep.
190s Preparing to unpack .../254-1-autopkgtest-satdep.deb ...
190s Unpacking autopkgtest-satdep (0) ...
190s Setting up libgraphite2-3:ppc64el (1.3.14-2) ...
190s Setting up libxcb-dri3-0:ppc64el (1.15-1) ...
190s Setting up liblcms2-2:ppc64el (2.14-2) ...
190s Setting up libpixman-1-0:ppc64el (0.42.2-1) ...
190s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ...
190s Setting up libwayland-server0:ppc64el (1.22.0-2.1) ...
190s Setting up libpaper1:ppc64el (1.1.29) ...
190s 
190s Creating config file /etc/papersize with new version
190s Setting up libx11-xcb1:ppc64el (2:1.8.7-1) ...
190s Setting up libpciaccess0:ppc64el (0.17-3) ...
190s Setting up imagemagick-6-common (8:6.9.12.98+dfsg1-5) ...
190s Setting up libdouble-conversion3:ppc64el (3.3.0-1) ...
190s Setting up libevent-extra-2.1-7:ppc64el (2.1.12-stable-9) ...
190s Setting up libdrm-nouveau2:ppc64el (2.4.120-2) ...
190s Setting up libxdamage1:ppc64el (1:1.1.6-1) ...
190s Setting up libxcb-xfixes0:ppc64el (1.15-1) ...
190s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
190s Setting up libxpm4:ppc64el (1:3.5.17-1) ...
190s Setting up hicolor-icon-theme (0.17-2) ...
190s Setting up libxi6:ppc64el (2:1.8.1-1) ...
190s Setting up libxcb-xinput0:ppc64el (1.15-1) ...
190s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ...
190s Setting up libdatrie1:ppc64el (0.2.13-3) ...
190s Setting up libxcb-render0:ppc64el (1.15-1) ...
190s Setting up libdrm-radeon1:ppc64el (2.4.120-2) ...
190s Setting up libglvnd0:ppc64el (1.7.0-1) ...
190s Setting up libboost-regex1.83.0:ppc64el (1.83.0-2.1ubuntu2) ...
190s Setting up libxcb-glx0:ppc64el (1.15-1) ...
190s Setting up unzip (6.0-28ubuntu3) ...
190s Setting up libboost-system1.83.0:ppc64el (1.83.0-2.1ubuntu2) ...
190s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ...
190s Setting up libxcb-keysyms1:ppc64el (0.4.0-1build3) ...
190s Setting up libxcb-shape0:ppc64el (1.15-1) ...
190s Setting up x11-common (1:7.7+23ubuntu2) ...
190s Setting up libdeflate0:ppc64el (1.19-1) ...
190s Setting up linux-libc-dev:ppc64el (6.8.0-11.11) ...
190s Setting up libevent-openssl-2.1-7:ppc64el (2.1.12-stable-9) ...
190s Setting up m4 (1.4.19-4) ...
190s Setting up libxcb-render-util0:ppc64el (0.3.9-1build3) ...
190s Setting up libxcb-shm0:ppc64el (1.15-1) ...
190s Setting up libxcb-icccm4:ppc64el (0.4.1-1.1build2) ...
190s Setting up libpaper-utils (1.1.29) ...
190s Setting up libatspi2.0-0:ppc64el (2.50.0-1) ...
190s Setting up libtext-wrapper-perl (1.05-4) ...
190s Setting up libboost-filesystem1.83.0:ppc64el (1.83.0-2.1ubuntu2) ...
190s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ...
190s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ...
190s Setting up libpcre2-16-0:ppc64el (10.42-4ubuntu1) ...
190s Setting up libcolord2:ppc64el (1.4.7-1) ...
190s Setting up libxcb-util1:ppc64el (0.4.0-1build2) ...
190s Setting up libxxf86vm1:ppc64el (1:1.1.4-1build3) ...
190s Setting up libxcb-xkb1:ppc64el (1.15-1) ...
190s Setting up libxcb-image0:ppc64el (0.4.0-2) ...
190s Setting up libxnvctrl0:ppc64el (510.47.03-0ubuntu1) ...
190s Setting up libboost-atomic1.83.0:ppc64el (1.83.0-2.1ubuntu2) ...
190s Setting up libxcb-present0:ppc64el (1.15-1) ...
190s Setting up libdconf1:ppc64el (0.40.0-4) ...
190s Setting up libio-string-perl (1.08-4) ...
190s Setting up zip (3.0-13) ...
190s Setting up autotools-dev (20220109.1) ...
190s Setting up libpcre2-32-0:ppc64el (10.42-4ubuntu1) ...
190s Setting up libblas3:ppc64el (3.12.0-3) ...
190s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
190s Setting up libxcb-xinerama0:ppc64el (1.15-1) ...
190s Setting up libtirpc-dev:ppc64el (1.3.4+ds-1build1) ...
190s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
190s Setting up libmunge2:ppc64el (0.5.15-3ubuntu1) ...
190s Setting up libepoxy0:ppc64el (1.5.10-1) ...
190s Setting up libxfixes3:ppc64el (1:6.0.0-2) ...
190s Setting up libxcb-sync1:ppc64el (1.15-1) ...
190s Setting up libboost-iostreams1.83.0:ppc64el (1.83.0-2.1ubuntu2) ...
190s Setting up aglfn (1.7+git20191031.4036a9c-2) ...
190s Setting up libavahi-common-data:ppc64el (0.8-13ubuntu2) ...
190s Setting up libquadmath0:ppc64el (14-20240303-1ubuntu1) ...
190s Setting up libxinerama1:ppc64el (2:1.1.4-3) ...
190s Setting up libxkbcommon-x11-0:ppc64el (1.6.0-1) ...
190s Setting up fonts-dejavu-mono (2.37-8) ...
190s Setting up libhwloc15:ppc64el (2.10.0-1) ...
190s Setting up libmpc3:ppc64el (1.3.1-1) ...
190s Setting up libcrypto++8t64:ppc64el (8.9.0-1.1) ...
190s Setting up libatomic1:ppc64el (14-20240303-1ubuntu1) ...
190s Setting up libevent-2.1-7:ppc64el (2.1.12-stable-9) ...
190s Setting up libxrandr2:ppc64el (2:1.5.2-2) ...
190s Setting up libtcl8.6:ppc64el (8.6.13+dfsg-2) ...
190s Setting up icu-devtools (74.2-1ubuntu1) ...
190s Setting up fonts-dejavu-core (2.37-8) ...
190s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
190s Setting up libqt5core5a:ppc64el (5.15.12+dfsg-3ubuntu1) ...
190s Setting up libltdl7:ppc64el (2.4.7-7) ...
190s Setting up libfftw3-double3:ppc64el (3.3.10-1ubuntu1) ...
190s Setting up libglapi-mesa:ppc64el (24.0.1-1ubuntu1) ...
190s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
190s Setting up libmtdev1:ppc64el (1.1.6-1build4) ...
190s Setting up libvulkan1:ppc64el (1.3.275.0-1) ...
190s Setting up autoconf (2.71-3) ...
190s Setting up libwebp7:ppc64el (1.3.2-0.4) ...
190s Setting up libubsan1:ppc64el (14-20240303-1ubuntu1) ...
190s Setting up libxcb-dri2-0:ppc64el (1.15-1) ...
190s Setting up libdata-stag-perl (0.14-3) ...
190s Setting up libdav1d7:ppc64el (1.4.0-1) ...
190s Setting up libnl-3-dev:ppc64el (3.7.0-0.3) ...
190s Setting up liblqr-1-0:ppc64el (0.4.2-2.1) ...
190s Setting up libnsl-dev:ppc64el (1.3.0-3) ...
190s Setting up ocl-icd-libopencl1:ppc64el (2.3.2-1) ...
190s Setting up libxshmfence1:ppc64el (1.3-1build4) ...
190s Setting up at-spi2-common (2.50.0-1) ...
190s Setting up libqt5dbus5:ppc64el (5.15.12+dfsg-3ubuntu1) ...
190s Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ...
190s Setting up libxcb-randr0:ppc64el (1.15-1) ...
190s Setting up libasan8:ppc64el (14-20240303-1ubuntu1) ...
190s Setting up openmpi-common (4.1.6-5.1ubuntu4) ...
190s Setting up libmd4c0:ppc64el (0.4.8-1) ...
190s Setting up librdmacm1t64:ppc64el (50.0-2) ...
190s Setting up liblua5.4-0:ppc64el (5.4.6-3) ...
190s Setting up libopenjp2-7:ppc64el (2.5.0-2) ...
190s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ...
190s Setting up libthai-data (0.1.29-2) ...
190s Setting up libatk1.0-0:ppc64el (2.50.0-1) ...
190s Setting up libwayland-egl1:ppc64el (1.22.0-2.1) ...
190s Setting up libbio-perl-perl (1.7.8-1) ...
190s Setting up libxss1:ppc64el (1:1.2.3-1build2) ...
190s Setting up libtsan2:ppc64el (14-20240303-1ubuntu1) ...
190s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
190s Setting up libterm-readkey-perl (2.38-2build2) ...
190s Setting up libisl23:ppc64el (0.26-3) ...
190s Setting up libde265-0:ppc64el (1.0.15-1) ...
190s Setting up libc-dev-bin (2.39-0ubuntu2) ...
190s Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
190s Setting up libwebpmux3:ppc64el (1.3.2-0.4) ...
190s Setting up libllvm17:ppc64el (1:17.0.6-5build1) ...
190s Setting up libxcomposite1:ppc64el (1:0.4.5-1build2) ...
190s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
190s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
190s Setting up libcc1-0:ppc64el (14-20240303-1ubuntu1) ...
190s Setting up liblsan0:ppc64el (14-20240303-1ubuntu1) ...
190s Setting up libitm1:ppc64el (14-20240303-1ubuntu1) ...
190s Setting up libevent-pthreads-2.1-7:ppc64el (2.1.12-stable-9) ...
190s Setting up libdrm-amdgpu1:ppc64el (2.4.120-2) ...
190s Setting up libwacom-common (2.10.0-1) ...
190s Setting up libwayland-client0:ppc64el (1.22.0-2.1) ...
190s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
190s Setting up automake (1:1.16.5-1.3ubuntu1) ...
190s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
190s Setting up libfabric1:ppc64el (1.17.0-3) ...
190s Setting up gnuplot-data (5.4.4+dfsg1-2build1) ...
190s Setting up libice6:ppc64el (2:1.0.10-1build2) ...
190s Setting up liblapack3:ppc64el (3.12.0-3) ...
190s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
190s Setting up libgbm1:ppc64el (24.0.1-1ubuntu1) ...
190s Setting up libwacom9:ppc64el (2.10.0-1) ...
190s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
191s Setting up libxtst6:ppc64el (2:1.2.3-1.1) ...
191s Setting up libwebpdemux2:ppc64el (1.3.2-0.4) ...
191s Setting up libxcursor1:ppc64el (1:1.2.1-1) ...
191s Setting up libcrypto++-dev:ppc64el (8.9.0-1.1) ...
191s Setting up libgl1-mesa-dri:ppc64el (24.0.1-1ubuntu1) ...
191s Setting up libavahi-common3:ppc64el (0.8-13ubuntu2) ...
191s Setting up dconf-service (0.40.0-4) ...
191s Setting up libhwloc-plugins:ppc64el (2.10.0-1) ...
191s Setting up libwxbase3.2-1:ppc64el (3.2.4+dfsg-3) ...
191s Setting up libqt5network5:ppc64el (5.15.12+dfsg-3ubuntu1) ...
191s Setting up libinput-bin (1.25.0-1) ...
191s Setting up libatk-bridge2.0-0:ppc64el (2.50.0-1) ...
191s Setting up libnl-route-3-dev:ppc64el (3.7.0-0.3) ...
191s Setting up libltdl-dev:ppc64el (2.4.7-7) ...
191s Setting up libthai0:ppc64el (0.1.29-2) ...
191s Setting up libegl-mesa0:ppc64el (24.0.1-1ubuntu1) ...
191s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
191s Setting up libevent-dev (2.1.12-stable-9) ...
191s Setting up libpstreams-dev (1.0.3-1) ...
191s Setting up libpmix2t64:ppc64el (5.0.1-4.1) ...
191s Setting up libgcc-13-dev:ppc64el (13.2.0-17ubuntu2) ...
191s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
191s Setting up libwayland-cursor0:ppc64el (1.22.0-2.1) ...
191s Setting up libegl1:ppc64el (1.7.0-1) ...
191s Setting up libc6-dev:ppc64el (2.39-0ubuntu2) ...
191s Setting up libgdk-pixbuf-2.0-0:ppc64el (2.42.10+dfsg-3) ...
191s Setting up libamd-comgr2:ppc64el (6.0+git20231212.4510c28+dfsg-3) ...
191s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
191s Setting up libraw23:ppc64el (0.21.2-2) ...
191s Setting up libgfortran-13-dev:ppc64el (13.2.0-17ubuntu2) ...
191s Setting up libsm6:ppc64el (2:1.2.3-1build2) ...
191s Setting up libicu-dev:ppc64el (74.2-1ubuntu1) ...
191s Setting up libavahi-client3:ppc64el (0.8-13ubuntu2) ...
191s Setting up libhsakmt1:ppc64el (5.7.0-1) ...
191s Setting up libstdc++-13-dev:ppc64el (13.2.0-17ubuntu2) ...
191s Setting up libinput10:ppc64el (1.25.0-1) ...
191s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ...
191s Setting up fontconfig (2.15.0-1ubuntu1) ...
193s Regenerating fonts cache... done.
193s Setting up libxft2:ppc64el (2.3.6-1) ...
193s Setting up libboost1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
193s Setting up libglx-mesa0:ppc64el (24.0.1-1ubuntu1) ...
193s Setting up libglx0:ppc64el (1.7.0-1) ...
193s Setting up dconf-gsettings-backend:ppc64el (0.40.0-4) ...
193s Setting up libtk8.6:ppc64el (8.6.13-2) ...
193s Setting up libpango-1.0-0:ppc64el (1.51.0+ds-4) ...
193s Setting up libibverbs-dev:ppc64el (50.0-2) ...
193s Setting up libcairo2:ppc64el (1.18.0-1) ...
193s Setting up libnuma-dev:ppc64el (2.0.18-1) ...
193s Setting up libgl1:ppc64el (1.7.0-1) ...
193s Setting up libnotify4:ppc64el (0.8.3-1) ...
193s Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
193s Setting up libgd3:ppc64el (2.3.3-9ubuntu1) ...
193s Setting up gcc-13 (13.2.0-17ubuntu2) ...
193s Setting up libboost-regex1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
193s Setting up libxt6:ppc64el (1:1.2.1-1.1) ...
193s Setting up libboost-atomic1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
193s Setting up libcups2:ppc64el (2.4.6-0ubuntu3) ...
193s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3ubuntu1) ...
193s Setting up libhsa-runtime64-1 (5.7.1-1) ...
193s Setting up libcairo-gobject2:ppc64el (1.18.0-1) ...
193s Setting up libhwloc-dev:ppc64el (2.10.0-1) ...
193s Setting up libboost-system1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
193s Setting up libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ...
193s Setting up libboost-regex-dev:ppc64el (1.83.0.1ubuntu2) ...
193s Setting up libpmix-dev:ppc64el (5.0.1-4.1) ...
193s Setting up libgtk-3-common (3.24.40-2ubuntu1) ...
193s Setting up libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ...
193s Setting up gfortran-13-powerpc64le-linux-gnu (13.2.0-17ubuntu2) ...
193s Setting up libboost-iostreams1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
193s Setting up libqt5gui5:ppc64el (5.15.12+dfsg-3ubuntu1) ...
193s Setting up libqt5widgets5:ppc64el (5.15.12+dfsg-3ubuntu1) ...
193s Setting up libboost-filesystem1.83-dev:ppc64el (1.83.0-2.1ubuntu2) ...
193s Setting up libboost-iostreams-dev:ppc64el (1.83.0.1ubuntu2) ...
193s Setting up libqt5printsupport5:ppc64el (5.15.12+dfsg-3ubuntu1) ...
193s Setting up libamdhip64-5 (5.2.3-12) ...
193s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
193s Setting up r-base-core (4.3.2-1build1) ...
193s 
193s Creating config file /etc/R/Renviron with new version
193s Setting up libboost-filesystem-dev:ppc64el (1.83.0.1ubuntu2) ...
193s Setting up libucx0:ppc64el (1.16.0+ds-4) ...
193s Setting up libqt5svg5:ppc64el (5.15.12-1) ...
193s Setting up r-cran-mass (7.3-60.0.1-1) ...
193s Setting up r-cran-gtools (3.9.5-1) ...
193s Setting up r-cran-bitops (1.0-7-1) ...
193s Setting up libopenmpi3t64:ppc64el (4.1.6-5.1ubuntu4) ...
193s Setting up r-cran-kernsmooth (2.23-22-1) ...
193s Setting up r-cran-catools (1.18.2-1) ...
193s Setting up r-cran-gdata (3.0.0-1) ...
193s Setting up openmpi-bin (4.1.6-5.1ubuntu4) ...
193s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
193s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
193s Setting up libopenmpi-dev:ppc64el (4.1.6-5.1ubuntu4) ...
193s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/openmpi/include to provide /usr/include/powerpc64le-linux-gnu/mpi (mpi-powerpc64le-linux-gnu) in auto mode
193s Setting up r-cran-gplots (3.1.3.1-1) ...
193s Setting up r-cran-rocr (1.0-11-2build1) ...
193s Setting up adwaita-icon-theme (46~rc-1) ...
193s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode
193s Setting up libheif-plugin-dav1d:ppc64el (1.17.6-1ubuntu1) ...
193s Setting up libheif-plugin-libde265:ppc64el (1.17.6-1ubuntu1) ...
193s Setting up libheif1:ppc64el (1.17.6-1ubuntu1) ...
193s Setting up libmagickcore-6.q16-7:ppc64el (8:6.9.12.98+dfsg1-5) ...
193s Setting up humanity-icon-theme (0.6.16) ...
193s Setting up libmagickwand-6.q16-7:ppc64el (8:6.9.12.98+dfsg1-5) ...
193s Setting up ubuntu-mono (24.04-0ubuntu1) ...
193s Setting up imagemagick-6.q16 (8:6.9.12.98+dfsg1-5) ...
193s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode
193s update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode
193s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode
193s update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode
193s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode
193s update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode
193s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode
193s update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode
193s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode
193s update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode
193s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode
193s update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode
193s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode
193s update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode
193s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode
193s update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode
193s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode
193s update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode
193s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode
193s update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode
193s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode
193s update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode
193s Setting up imagemagick (8:6.9.12.98+dfsg1-5) ...
193s Processing triggers for install-info (7.1-3) ...
193s Processing triggers for libglib2.0-0:ppc64el (2.79.2-1~ubuntu1) ...
193s Setting up libgtk-3-0:ppc64el (3.24.40-2ubuntu1) ...
193s Processing triggers for libc-bin (2.39-0ubuntu2) ...
193s Processing triggers for man-db (2.12.0-3) ...
195s Processing triggers for udev (255.2-3ubuntu2) ...
195s Setting up libwxgtk3.2-1:ppc64el (3.2.4+dfsg-3) ...
195s Setting up gnuplot-qt (5.4.4+dfsg1-2build1) ...
195s update-alternatives: using /usr/bin/gnuplot-qt to provide /usr/bin/gnuplot (gnuplot) in auto mode
195s Setting up murasaki-common (1.68.6-13build4) ...
195s Setting up gnuplot (5.4.4+dfsg1-2build1) ...
195s Setting up murasaki (1.68.6-13build4) ...
195s Setting up murasaki-mpi (1.68.6-13build4) ...
195s Setting up autopkgtest-satdep (0) ...
195s Processing triggers for libc-bin (2.39-0ubuntu2) ...
204s (Reading database ... 112307 files and directories currently installed.)
204s Removing autopkgtest-satdep (0) ...
205s autopkgtest [20:17:46]: test run-unit-test: [-----------------------
205s Test Murasaki on NZ_GG705055.fna
205s Created output directory: /tmp/autopkgtest.jLHO3o/autopkgtest_tmp/output
205s Verbosity level is: 0
205s Writing to: output/test
205s Pattern is: 101
205s Max usable hash bits: 27
205s Hit filter is: 0
205s Hash table type is: EcoHash
205s Hashing every: 1 base
205s Histogram detail is: 0
205s Hashing function is: 3
205s Collision profiling is: disabled
205s Repeats are: unmasked
205s Mergefilter is at: 100
205s Random seed: 1710447466 (automatic)
205s Bitscore output: on
205s Leave status records: no
205s Join neighbors is: off
205s Target memory is: 1.24 GB
205s Retain members is: true
205s Store repeatmap? yes
205s Reverse complement data is generated on the fly
205s Rifts allowed: 0
205s Fuzzy Extension: yes
205s Score by minimum pair: yes
205s Gapped anchors: no
205s Large sequence support is: enabled => seqpos is 8 bytes
205s Murasaki version 1.68.6 (LARGESEQ)
205s Loading NZ_GG705055.fna
205s Read 398859bp (389.51 KBp) in 0.019 seconds (20.0 MBp/s)
205s Done with forward strand (410644bp). Preparing reverse complement...
205s  <-> Reversing metdata.
205s Done.
205s Seq NZ_GG705055.fna loaded. 401.02 KB
205s Loading NZ_GG705055.gbk
205s Read 398859bp (389.51 KBp) in 0.028 seconds (13.6 MBp/s)
205s Done with forward strand (410644bp). Preparing reverse complement...
205s  <-> Reversing metdata.
205s Done.
205s Seq NZ_GG705055.gbk loaded. 401.02 KB
205s Sequence loading took: 0.047 seconds
205s Forward frequencies:  A:28.0367%  C:23.1004%  G:20.9036%  T:27.9593%
205s Global base frequencies:  A/T:55.996%  C/G:44.004%
205s Pat: 3 bases long with weight 2
205s    1 101 
205s Computing hash parameters...
205s Using 4 hashbits
205s  0%......... (T -0.127 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 10%......... (T -0.114 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 91%........
205s Acceptable hash function found after 1000 cycles.
205s Best uses 2/2 bases and has 0 empties from 2 inputs.
205s Score: 0.96875 (cf. worst: -4.51562)
205s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
205s Total correlation penalty: 0
205s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
205s                                             10
205s                                             ==
205s w[ 0]>>29:                                 -.C
205s w[ 0]>>30:                                  A.-
205s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
205s Ecolist (optimistic): Expcted entries per list: 17
205s Ecolist (optimistic): Minimum chunks per list: 2
205s Would take minimum 256.000000 bytes to make perfect hash.
205s Hashing 1.52 MB of sequence requires: 
205s  ~ linear (in seq length) hashing cost of 4.18 MB
205s  ~ linear (in seq length) expected anchor cost of 37.60 MB
205s Initial hash table uses: 256 bytes (4 bits, 16 entries)
205s Expected memory usage (without anchors): 4.18 MB
205s Expected memory usage (with anchors): 41.78 MB
205s Hash parameters computed in 0.132 seconds
205s Creating storage structures: 16 entries in 256 bytes space.
205s Storage structures created in: 0.000 seconds
205s 
205s Hashing NZ_GG705055.fna forwards
205s  0%......... (T -0.025 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 10%......... (T -0.023 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 20%......... (T -0.020 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 30%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 40%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 50%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 60%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 70%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 80%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 90%.........
205s Hashing NZ_GG705055.fna backwards
205s  0%......... (T -0.029 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 10%......... (T -0.026 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 20%......... (T -0.023 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 30%......... (T -0.020 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 40%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 50%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 60%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 70%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 80%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 90%.........
205s Hashing NZ_GG705055.gbk forwards
205s  0%......... (T -0.035 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 10%......... (T -0.032 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 20%......... (T -0.028 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 30%......... (T -0.024 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 40%......... (T -0.020 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 50%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 60%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 70%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 80%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 90%.........
205s Hashing NZ_GG705055.gbk backwards
205s  0%......... (T -0.038 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 10%......... (T -0.033 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 20%......... (T -0.029 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 30%......... (T -0.025 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 40%......... (T -0.021 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 50%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 60%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 70%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 80%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:46 2024
205s 90%.........
205s Initial hashing took: 0.146 seconds
205s Extracting anchors from hash-space.
205s  (T -1.843 seconds) ETA: Thu Mar 14 20:17:48 2024
205s  6%. (T -1.393 seconds) ETA: Thu Mar 14 20:17:48 2024
206s 18%. (T -1.137 seconds) ETA: Thu Mar 14 20:17:48 2024
206s 31%. (T -0.874 seconds) ETA: Thu Mar 14 20:17:48 2024
206s 43%. (T -0.662 seconds) ETA: Thu Mar 14 20:17:48 2024
206s 56%. (T -0.461 seconds) ETA: Thu Mar 14 20:17:48 2024
206s 68%. (T -0.284 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 81%. (T -0.105 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 93%.
207s Anchor extraction completed in: 1.518 seconds
207s Total anchors: 0
207s Anchor extraction + merge time: 1.518 seconds
207s Total processing time: 1.845 seconds
207s Writing anchors...
207s Total seeds used in anchors: 16
207s Hash performance:
207s  Keys used: 16 out of 16 possible (100.00%).
207s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
207s  Average pigeons per pigeon hole: 1
207s Writing 16 repeats...Output writing finished in: 0.222 seconds
207s Total time: 2.067 seconds
207s Murasaki finished!
207s PASSED MURASAKI
207s 
207s Testing Genepare on NZ_GG705055.fna
207s 1001
207s PASSED GENEPARSE
207s 
207s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
207s Testing mbfa on NZ_GG705055.fna
207s PASSED mbfa
207s 
207s Test Murasaki on NZ_GG705056.fna
207s Verbosity level is: 0
207s Writing to: output/test
207s Pattern is: 101
207s Max usable hash bits: 27
207s Hit filter is: 0
207s Hash table type is: EcoHash
207s Hashing every: 1 base
207s Histogram detail is: 0
207s Hashing function is: 3
207s Collision profiling is: disabled
207s Repeats are: unmasked
207s Mergefilter is at: 100
207s Random seed: 1710447468 (automatic)
207s Bitscore output: on
207s Leave status records: no
207s Join neighbors is: off
207s Target memory is: 1.24 GB
207s Retain members is: true
207s Store repeatmap? yes
207s Reverse complement data is generated on the fly
207s Rifts allowed: 0
207s Fuzzy Extension: yes
207s Score by minimum pair: yes
207s Gapped anchors: no
207s Large sequence support is: enabled => seqpos is 8 bytes
207s Murasaki version 1.68.6 (LARGESEQ)
207s Loading NZ_GG705056.fna
207s Read 395160bp (385.90 KBp) in 0.019 seconds (20.3 MBp/s)
207s Done with forward strand (409732bp). Preparing reverse complement...
207s  <-> Reversing metdata.
207s Done.
207s Seq NZ_GG705056.fna loaded. 400.13 KB
207s Loading NZ_GG705056.gbk
207s Read 395160bp (385.90 KBp) in 0.026 seconds (14.5 MBp/s)
207s Done with forward strand (409732bp). Preparing reverse complement...
207s  <-> Reversing metdata.
207s Done.
207s Seq NZ_GG705056.gbk loaded. 400.13 KB
207s Sequence loading took: 0.045 seconds
207s Forward frequencies:  A:28.3574%  C:22.4405%  G:20.4591%  T:28.743%
207s Global base frequencies:  A/T:57.1004%  C/G:42.8996%
207s Pat: 3 bases long with weight 2
207s    1 101 
207s Computing hash parameters...
207s Using 4 hashbits
207s  0%......... (T -0.118 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 10%......... (T -0.105 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 20%......... (T -0.092 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 91%........
207s Acceptable hash function found after 1000 cycles.
207s Best uses 2/2 bases and has 0 empties from 2 inputs.
207s Score: 0.96875 (cf. worst: -4.51562)
207s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
207s Total correlation penalty: 0
207s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
207s                                             10
207s                                             ==
207s w[ 0]>>29:                                 -.C
207s w[ 0]>>30:                                  A.-
207s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
207s Ecolist (optimistic): Expcted entries per list: 17
207s Ecolist (optimistic): Minimum chunks per list: 2
207s Would take minimum 256.000000 bytes to make perfect hash.
207s Hashing 1.51 MB of sequence requires: 
207s  ~ linear (in seq length) hashing cost of 4.15 MB
207s  ~ linear (in seq length) expected anchor cost of 37.51 MB
207s Initial hash table uses: 256 bytes (4 bits, 16 entries)
207s Expected memory usage (without anchors): 4.15 MB
207s Expected memory usage (with anchors): 41.66 MB
207s Hash parameters computed in 0.134 seconds
207s Creating storage structures: 16 entries in 256 bytes space.
207s Storage structures created in: 0.000 seconds
207s 
207s Hashing NZ_GG705056.fna forwards
207s  0%......... (T -0.028 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 10%......... (T -0.025 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 20%......... (T -0.020 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 30%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 40%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 50%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 60%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 70%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 80%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 90%.........
207s Hashing NZ_GG705056.fna backwards
207s  0%......... (T -0.032 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 10%......... (T -0.027 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 20%......... (T -0.024 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 30%......... (T -0.021 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 40%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 50%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 60%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 70%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 80%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 90%.........
207s Hashing NZ_GG705056.gbk forwards
207s  0%......... (T -0.033 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 10%......... (T -0.029 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 20%......... (T -0.027 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 30%......... (T -0.024 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 40%......... (T -0.020 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 50%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 60%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 70%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 80%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 90%.........
207s Hashing NZ_GG705056.gbk backwards
207s  0%......... (T -0.039 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 10%......... (T -0.036 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 20%......... (T -0.032 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 30%......... (T -0.027 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 40%......... (T -0.022 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 50%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 60%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 70%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 80%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:48 2024
207s 90%.........
207s Initial hashing took: 0.154 seconds
207s Extracting anchors from hash-space.
207s  (T -1.462 seconds) ETA: Thu Mar 14 20:17:50 2024
208s  6%. (T -1.568 seconds) ETA: Thu Mar 14 20:17:50 2024
208s 18%. (T -1.133 seconds) ETA: Thu Mar 14 20:17:50 2024
208s 31%. (T -0.940 seconds) ETA: Thu Mar 14 20:17:50 2024
208s 43%. (T -0.644 seconds) ETA: Thu Mar 14 20:17:50 2024
208s 56%. (T -0.464 seconds) ETA: Thu Mar 14 20:17:50 2024
208s 68%. (T -0.275 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 81%. (T -0.107 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 93%.
209s Anchor extraction completed in: 1.511 seconds
209s Total anchors: 0
209s Anchor extraction + merge time: 1.511 seconds
209s Total processing time: 1.845 seconds
209s Writing anchors...
209s Total seeds used in anchors: 16
209s Hash performance:
209s  Keys used: 16 out of 16 possible (100.00%).
209s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
209s  Average pigeons per pigeon hole: 1
209s Writing 16 repeats...Output writing finished in: 0.223 seconds
209s Total time: 2.068 seconds
209s Murasaki finished!
209s PASSED MURASAKI
209s 
209s Testing Genepare on NZ_GG705056.fna
209s 1001
209s PASSED GENEPARSE
209s 
209s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
209s Testing mbfa on NZ_GG705056.fna
209s PASSED mbfa
209s 
209s Test Murasaki on NZ_GG705057.fna
209s Verbosity level is: 0
209s Writing to: output/test
209s Pattern is: 101
209s Max usable hash bits: 27
209s Hit filter is: 0
209s Hash table type is: EcoHash
209s Hashing every: 1 base
209s Histogram detail is: 0
209s Hashing function is: 3
209s Collision profiling is: disabled
209s Repeats are: unmasked
209s Mergefilter is at: 100
209s Random seed: 1710447470 (automatic)
209s Bitscore output: on
209s Leave status records: no
209s Join neighbors is: off
209s Target memory is: 1.24 GB
209s Retain members is: true
209s Store repeatmap? yes
209s Reverse complement data is generated on the fly
209s Rifts allowed: 0
209s Fuzzy Extension: yes
209s Score by minimum pair: yes
209s Gapped anchors: no
209s Large sequence support is: enabled => seqpos is 8 bytes
209s Murasaki version 1.68.6 (LARGESEQ)
209s Loading NZ_GG705057.fna
209s Read 295987bp (289.05 KBp) in 0.013 seconds (21.2 MBp/s)
209s Done with forward strand (304045bp). Preparing reverse complement...
209s  <-> Reversing metdata.
209s Done.
209s Seq NZ_GG705057.fna loaded. 296.92 KB
209s Loading NZ_GG705057.gbk
209s Read 295987bp (289.05 KBp) in 0.019 seconds (15.0 MBp/s)
209s Done with forward strand (304045bp). Preparing reverse complement...
209s  <-> Reversing metdata.
209s Done.
209s Seq NZ_GG705057.gbk loaded. 296.92 KB
209s Sequence loading took: 0.033 seconds
209s Forward frequencies:  A:28.7229%  C:20.2448%  G:22.7206%  T:28.3117%
209s Global base frequencies:  A/T:57.0346%  C/G:42.9654%
209s Pat: 3 bases long with weight 2
209s    1 101 
209s Computing hash parameters...
209s Using 4 hashbits
209s  0%......... (T -0.118 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 10%......... (T -0.103 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 20%......... (T -0.090 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 30%......... (T -0.078 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 40%......... (T -0.065 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 50%......... (T -0.052 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 91%........
209s Acceptable hash function found after 1000 cycles.
209s Best uses 2/2 bases and has 0 empties from 2 inputs.
209s Score: 0.96875 (cf. worst: -4.51562)
209s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
209s Total correlation penalty: 0
209s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
209s                                             10
209s                                             ==
209s w[ 0]>>29:                                 -.C
209s w[ 0]>>30:                                  A.-
209s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
209s Ecolist (optimistic): Expcted entries per list: 17
209s Ecolist (optimistic): Minimum chunks per list: 2
209s Would take minimum 256.000000 bytes to make perfect hash.
209s Hashing 1.13 MB of sequence requires: 
209s  ~ linear (in seq length) hashing cost of 3.11 MB
209s  ~ linear (in seq length) expected anchor cost of 27.84 MB
209s Initial hash table uses: 256 bytes (4 bits, 16 entries)
209s Expected memory usage (without anchors): 3.11 MB
209s Expected memory usage (with anchors): 30.94 MB
209s Hash parameters computed in 0.132 seconds
209s Creating storage structures: 16 entries in 256 bytes space.
209s Storage structures created in: 0.000 seconds
209s 
209s Hashing NZ_GG705057.fna forwards
209s  0%......... (T -0.020 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 10%......... (T -0.019 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 20%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 30%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 40%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 50%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 60%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 70%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 90%.........
209s Hashing NZ_GG705057.fna backwards
209s  0%......... (T -0.021 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 10%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 20%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 30%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 40%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 50%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 60%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 70%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 80%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 90%.........
209s Hashing NZ_GG705057.gbk forwards
209s  0%......... (T -0.026 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 10%......... (T -0.023 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 20%......... (T -0.021 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 30%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 40%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 50%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 60%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 70%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 80%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 90%.........
209s Hashing NZ_GG705057.gbk backwards
209s  0%......... (T -0.026 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 10%......... (T -0.022 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 20%......... (T -0.019 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 30%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 40%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 50%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 60%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 70%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 80%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:50 2024
209s 90%.........
209s Initial hashing took: 0.111 seconds
209s Extracting anchors from hash-space.
209s  (T -1.098 seconds) ETA: Thu Mar 14 20:17:52 2024
210s  6%. (T -0.840 seconds) ETA: Thu Mar 14 20:17:51 2024
210s 18%. (T -0.769 seconds) ETA: Thu Mar 14 20:17:51 2024
210s 31%. (T -0.643 seconds) ETA: Thu Mar 14 20:17:51 2024
210s 43%. (T -0.527 seconds) ETA: Thu Mar 14 20:17:52 2024
210s 56%. (T -0.381 seconds) ETA: Thu Mar 14 20:17:52 2024
210s 68%. (T -0.231 seconds) ETA: Thu Mar 14 20:17:52 2024
210s 81%. (T -0.081 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 93%.
211s Anchor extraction completed in: 1.139 seconds
211s Total anchors: 0
211s Anchor extraction + merge time: 1.139 seconds
211s Total processing time: 1.416 seconds
211s Writing anchors...
211s Total seeds used in anchors: 16
211s Hash performance:
211s  Keys used: 16 out of 16 possible (100.00%).
211s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
211s  Average pigeons per pigeon hole: 1
211s Writing 16 repeats...Output writing finished in: 0.166 seconds
211s Total time: 1.582 seconds
211s Murasaki finished!
211s PASSED MURASAKI
211s 
211s Testing Genepare on NZ_GG705057.fna
211s 1001
211s PASSED GENEPARSE
211s 
211s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
211s Testing mbfa on NZ_GG705057.fna
211s PASSED mbfa
211s 
211s Test Murasaki on NZ_GG705058.fna
211s Verbosity level is: 0
211s Writing to: output/test
211s Pattern is: 101
211s Max usable hash bits: 27
211s Hit filter is: 0
211s Hash table type is: EcoHash
211s Hashing every: 1 base
211s Histogram detail is: 0
211s Hashing function is: 3
211s Collision profiling is: disabled
211s Repeats are: unmasked
211s Mergefilter is at: 100
211s Random seed: 1710447472 (automatic)
211s Bitscore output: on
211s Leave status records: no
211s Join neighbors is: off
211s Target memory is: 1.24 GB
211s Retain members is: true
211s Store repeatmap? yes
211s Reverse complement data is generated on the fly
211s Rifts allowed: 0
211s Fuzzy Extension: yes
211s Score by minimum pair: yes
211s Gapped anchors: no
211s Large sequence support is: enabled => seqpos is 8 bytes
211s Murasaki version 1.68.6 (LARGESEQ)
211s Loading NZ_GG705058.fna
211s Read 261113bp (254.99 KBp) in 0.012 seconds (21.1 MBp/s)
211s Done with forward strand (268087bp). Preparing reverse complement...
211s  <-> Reversing metdata.
211s Done.
211s Seq NZ_GG705058.fna loaded. 261.80 KB
211s Loading NZ_GG705058.gbk
211s Read 261113bp (254.99 KBp) in 0.017 seconds (15.0 MBp/s)
211s Done with forward strand (268087bp). Preparing reverse complement...
211s  <-> Reversing metdata.
211s Done.
211s Seq NZ_GG705058.gbk loaded. 261.80 KB
211s Sequence loading took: 0.029 seconds
211s Forward frequencies:  A:29.3149%  C:19.6057%  G:21.8568%  T:29.2226%
211s Global base frequencies:  A/T:58.5375%  C/G:41.4625%
211s Pat: 3 bases long with weight 2
211s    1 101 
211s Computing hash parameters...
211s Using 4 hashbits
211s  0%......... (T -0.115 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 10%......... (T -0.102 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 20%......... (T -0.089 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 30%......... (T -0.077 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 40%......... (T -0.065 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 50%......... (T -0.052 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 91%........
211s Acceptable hash function found after 1000 cycles.
211s Best uses 2/2 bases and has 0 empties from 2 inputs.
211s Score: 0.96875 (cf. worst: -4.51562)
211s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
211s Total correlation penalty: 0
211s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
211s                                             10
211s                                             ==
211s w[ 0]>>29:                                 -.C
211s w[ 0]>>30:                                  A.-
211s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
211s Ecolist (optimistic): Expcted entries per list: 16
211s Ecolist (optimistic): Minimum chunks per list: 2
211s Would take minimum 256.000000 bytes to make perfect hash.
211s Hashing 1019.97 KB of sequence requires: 
211s  ~ linear (in seq length) hashing cost of 2.74 MB
211s  ~ linear (in seq length) expected anchor cost of 24.54 MB
211s Initial hash table uses: 256 bytes (4 bits, 16 entries)
211s Expected memory usage (without anchors): 2.74 MB
211s Expected memory usage (with anchors): 27.28 MB
211s Hash parameters computed in 0.131 seconds
211s Creating storage structures: 16 entries in 256 bytes space.
211s Storage structures created in: 0.000 seconds
211s 
211s Hashing NZ_GG705058.fna forwards
211s  0%......... (T -0.020 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 10%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 20%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 30%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 40%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 50%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 60%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 70%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 90%.........
211s Hashing NZ_GG705058.fna backwards
211s  0%......... (T -0.021 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 10%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 20%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 30%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 40%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 50%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 60%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 70%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 90%.........
211s Hashing NZ_GG705058.gbk forwards
211s  0%......... (T -0.023 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 10%......... (T -0.021 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 20%......... (T -0.019 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 30%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 40%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 50%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 60%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 70%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 80%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 90%.........
211s Hashing NZ_GG705058.gbk backwards
211s  0%......... (T -0.026 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 10%......... (T -0.023 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 20%......... (T -0.020 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 30%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 40%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 50%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 60%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 70%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 80%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:52 2024
211s 90%.........
211s Initial hashing took: 0.100 seconds
211s Extracting anchors from hash-space.
211s  (T -0.966 seconds) ETA: Thu Mar 14 20:17:53 2024
211s  6%. (T -1.092 seconds) ETA: Thu Mar 14 20:17:53 2024
211s 18%. (T -0.743 seconds) ETA: Thu Mar 14 20:17:53 2024
211s 31%. (T -0.597 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 43%. (T -0.406 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 56%. (T -0.296 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 68%. (T -0.175 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 81%. (T -0.069 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 93%.
212s Anchor extraction completed in: 0.962 seconds
212s Total anchors: 0
212s Anchor extraction + merge time: 0.962 seconds
212s Total processing time: 1.224 seconds
212s Writing anchors...
212s Total seeds used in anchors: 16
212s Hash performance:
212s  Keys used: 16 out of 16 possible (100.00%).
212s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
212s  Average pigeons per pigeon hole: 1
212s Writing 16 repeats...Output writing finished in: 0.146 seconds
212s Total time: 1.370 seconds
212s Murasaki finished!
212s PASSED MURASAKI
212s 
212s Testing Genepare on NZ_GG705058.fna
212s 1001
212s PASSED GENEPARSE
212s 
212s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
212s Testing mbfa on NZ_GG705058.fna
212s PASSED mbfa
212s 
212s Test Murasaki on NZ_GG705059.fna
212s Verbosity level is: 0
212s Writing to: output/test
212s Pattern is: 101
212s Max usable hash bits: 27
212s Hit filter is: 0
212s Hash table type is: EcoHash
212s Hashing every: 1 base
212s Histogram detail is: 0
212s Hashing function is: 3
212s Collision profiling is: disabled
212s Repeats are: unmasked
212s Mergefilter is at: 100
212s Random seed: 1710447473 (automatic)
212s Bitscore output: on
212s Leave status records: no
212s Join neighbors is: off
212s Target memory is: 1.24 GB
212s Retain members is: true
212s Store repeatmap? yes
212s Reverse complement data is generated on the fly
212s Rifts allowed: 0
212s Fuzzy Extension: yes
212s Score by minimum pair: yes
212s Gapped anchors: no
212s Large sequence support is: enabled => seqpos is 8 bytes
212s Murasaki version 1.68.6 (LARGESEQ)
212s Loading NZ_GG705059.fna
212s Read 254292bp (248.33 KBp) in 0.012 seconds (20.4 MBp/s)
212s Done with forward strand (263842bp). Preparing reverse complement...
212s  <-> Reversing metdata.
212s Done.
212s Seq NZ_GG705059.fna loaded. 257.66 KB
212s Loading NZ_GG705059.gbk
212s Read 254292bp (248.33 KBp) in 0.017 seconds (14.3 MBp/s)
212s Done with forward strand (263842bp). Preparing reverse complement...
212s  <-> Reversing metdata.
212s Done.
212s Seq NZ_GG705059.gbk loaded. 257.66 KB
212s Sequence loading took: 0.029 seconds
212s Forward frequencies:  A:28.2899%  C:22.6452%  G:20.7128%  T:28.3521%
212s Global base frequencies:  A/T:56.642%  C/G:43.358%
212s Pat: 3 bases long with weight 2
212s    1 101 
212s Computing hash parameters...
212s Using 4 hashbits
212s  0%......... (T -0.119 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 10%......... (T -0.105 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 20%......... (T -0.092 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 40%......... (T -0.065 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 50%......... (T -0.052 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 91%........
212s Acceptable hash function found after 1000 cycles.
212s Best uses 2/2 bases and has 0 empties from 2 inputs.
212s Score: 0.96875 (cf. worst: -4.51562)
212s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
212s Total correlation penalty: 0
212s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
212s                                             10
212s                                             ==
212s w[ 0]>>29:                                 -.C
212s w[ 0]>>30:                                  A.-
212s Ecolist (optimistic): (seqbits: 2 idxbits: 20 minBlocks: 1 initblocks: 1)
212s Ecolist (optimistic): Expcted entries per list: 16
212s Ecolist (optimistic): Minimum chunks per list: 2
212s Would take minimum 256.000000 bytes to make perfect hash.
212s Hashing 993.33 KB of sequence requires: 
212s  ~ linear (in seq length) hashing cost of 2.67 MB
212s  ~ linear (in seq length) expected anchor cost of 24.16 MB
212s Initial hash table uses: 256 bytes (4 bits, 16 entries)
212s Expected memory usage (without anchors): 2.67 MB
212s Expected memory usage (with anchors): 26.82 MB
212s Hash parameters computed in 0.132 seconds
212s Creating storage structures: 16 entries in 256 bytes space.
212s Storage structures created in: 0.000 seconds
212s 
212s Hashing NZ_GG705059.fna forwards
212s  0%......... (T -0.020 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 10%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 20%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 30%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 40%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 50%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 60%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 70%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 90%.........
212s Hashing NZ_GG705059.fna backwards
212s  0%......... (T -0.022 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 10%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 20%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 30%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 40%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 50%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 60%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 70%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 90%.........
212s Hashing NZ_GG705059.gbk forwards
212s  0%......... (T -0.023 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 10%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 20%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 30%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 40%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 50%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 60%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 70%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 90%.........
212s Hashing NZ_GG705059.gbk backwards
212s  0%......... (T -0.027 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 10%......... (T -0.024 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 20%......... (T -0.022 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 30%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 40%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 50%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 60%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 70%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 80%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:53 2024
212s 90%.........
212s Initial hashing took: 0.095 seconds
212s Extracting anchors from hash-space.
212s  (T -0.961 seconds) ETA: Thu Mar 14 20:17:54 2024
213s  6%. (T -0.739 seconds) ETA: Thu Mar 14 20:17:54 2024
213s 18%. (T -0.551 seconds) ETA: Thu Mar 14 20:17:54 2024
213s 31%. (T -0.536 seconds) ETA: Thu Mar 14 20:17:54 2024
213s 43%. (T -0.409 seconds) ETA: Thu Mar 14 20:17:54 2024
213s 56%. (T -0.319 seconds) ETA: Thu Mar 14 20:17:54 2024
213s 68%. (T -0.180 seconds) ETA: Thu Mar 14 20:17:54 2024
213s 81%. (T -0.067 seconds) ETA: Thu Mar 14 20:17:54 2024
213s 93%.
213s Anchor extraction completed in: 0.937 seconds
213s Total anchors: 0
213s Anchor extraction + merge time: 0.937 seconds
213s Total processing time: 1.195 seconds
213s Writing anchors...
213s Total seeds used in anchors: 16
213s Hash performance:
213s  Keys used: 16 out of 16 possible (100.00%).
213s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
213s  Average pigeons per pigeon hole: 1
214s Writing 16 repeats...Output writing finished in: 0.143 seconds
214s Total time: 1.337 seconds
214s Murasaki finished!
214s PASSED MURASAKI
214s 
214s Testing Genepare on NZ_GG705059.fna
214s 1001
214s PASSED GENEPARSE
214s 
214s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
214s Testing mbfa on NZ_GG705059.fna
214s PASSED mbfa
214s 
214s Test Murasaki on NZ_GG705060.fna
214s Verbosity level is: 0
214s Writing to: output/test
214s Pattern is: 101
214s Max usable hash bits: 27
214s Hit filter is: 0
214s Hash table type is: EcoHash
214s Hashing every: 1 base
214s Histogram detail is: 0
214s Hashing function is: 3
214s Collision profiling is: disabled
214s Repeats are: unmasked
214s Mergefilter is at: 100
214s Random seed: 1710447475 (automatic)
214s Bitscore output: on
214s Leave status records: no
214s Join neighbors is: off
214s Target memory is: 1.24 GB
214s Retain members is: true
214s Store repeatmap? yes
214s Reverse complement data is generated on the fly
214s Rifts allowed: 0
214s Fuzzy Extension: yes
214s Score by minimum pair: yes
214s Gapped anchors: no
214s Large sequence support is: enabled => seqpos is 8 bytes
214s Murasaki version 1.68.6 (LARGESEQ)
214s Loading NZ_GG705060.fna
214s Read 250160bp (244.30 KBp) in 0.012 seconds (20.7 MBp/s)
214s Done with forward strand (261824bp). Preparing reverse complement...
214s  <-> Reversing metdata.
214s Done.
214s Seq NZ_GG705060.fna loaded. 255.69 KB
214s Loading NZ_GG705060.gbk
214s Read 250160bp (244.30 KBp) in 0.017 seconds (14.4 MBp/s)
214s Done with forward strand (261824bp). Preparing reverse complement...
214s  <-> Reversing metdata.
214s Done.
214s Seq NZ_GG705060.gbk loaded. 255.69 KB
214s Sequence loading took: 0.029 seconds
214s Forward frequencies:  A:28.3151%  C:22.1794%  G:20.8447%  T:28.6609%
214s Global base frequencies:  A/T:56.9759%  C/G:43.0241%
214s Pat: 3 bases long with weight 2
214s    1 101 
214s Computing hash parameters...
214s Using 4 hashbits
214s  0%......... (T -0.116 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 10%......... (T -0.103 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 20%......... (T -0.091 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 30%......... (T -0.077 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 40%......... (T -0.065 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 50%......... (T -0.052 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 91%........
214s Acceptable hash function found after 1000 cycles.
214s Best uses 2/2 bases and has 0 empties from 2 inputs.
214s Score: 0.96875 (cf. worst: -4.51562)
214s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
214s Total correlation penalty: 0
214s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
214s                                             10
214s                                             ==
214s w[ 0]>>29:                                 -.C
214s w[ 0]>>30:                                  A.-
214s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
214s Ecolist (optimistic): Expcted entries per list: 16
214s Ecolist (optimistic): Minimum chunks per list: 3
214s Would take minimum 256.000000 bytes to make perfect hash.
214s Hashing 977.19 KB of sequence requires: 
214s  ~ linear (in seq length) hashing cost of 2.50 MB
214s  ~ linear (in seq length) expected anchor cost of 23.97 MB
214s Initial hash table uses: 256 bytes (4 bits, 16 entries)
214s Expected memory usage (without anchors): 2.51 MB
214s Expected memory usage (with anchors): 26.48 MB
214s Hash parameters computed in 0.131 seconds
214s Creating storage structures: 16 entries in 256 bytes space.
214s Storage structures created in: 0.000 seconds
214s 
214s Hashing NZ_GG705060.fna forwards
214s  0%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 10%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 20%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 30%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 40%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 50%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 60%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 70%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 90%.........
214s Hashing NZ_GG705060.fna backwards
214s  0%......... (T -0.023 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 10%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 20%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 30%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 40%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 50%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 60%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 70%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 90%.........
214s Hashing NZ_GG705060.gbk forwards
214s  0%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 10%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 20%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 30%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 40%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 50%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 60%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 70%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 90%.........
214s Hashing NZ_GG705060.gbk backwards
214s  0%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 10%......... (T -0.019 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 20%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 30%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 40%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 50%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 60%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 70%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 80%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 90%.........
214s Initial hashing took: 0.098 seconds
214s Extracting anchors from hash-space.
214s  (T -0.947 seconds) ETA: Thu Mar 14 20:17:56 2024
214s  6%. (T -0.611 seconds) ETA: Thu Mar 14 20:17:56 2024
214s 18%. (T -0.504 seconds) ETA: Thu Mar 14 20:17:56 2024
214s 31%. (T -0.373 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 43%. (T -0.281 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 56%. (T -0.198 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 68%. (T -0.119 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 81%. (T -0.044 seconds) ETA: Thu Mar 14 20:17:55 2024
214s 93%.
214s Anchor extraction completed in: 0.641 seconds
214s Total anchors: 0
214s Anchor extraction + merge time: 0.641 seconds
214s Total processing time: 0.900 seconds
214s Writing anchors...
214s Total seeds used in anchors: 16
214s Hash performance:
214s  Keys used: 16 out of 16 possible (100.00%).
214s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
214s  Average pigeons per pigeon hole: 1
215s Writing 16 repeats...Output writing finished in: 0.142 seconds
215s Total time: 1.042 seconds
215s Murasaki finished!
215s PASSED MURASAKI
215s 
215s Testing Genepare on NZ_GG705060.fna
215s 1001
215s PASSED GENEPARSE
215s 
215s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
215s Testing mbfa on NZ_GG705060.fna
215s PASSED mbfa
215s 
215s Test Murasaki on NZ_GG705061.fna
215s Verbosity level is: 0
215s Writing to: output/test
215s Pattern is: 101
215s Max usable hash bits: 27
215s Hit filter is: 0
215s Hash table type is: EcoHash
215s Hashing every: 1 base
215s Histogram detail is: 0
215s Hashing function is: 3
215s Collision profiling is: disabled
215s Repeats are: unmasked
215s Mergefilter is at: 100
215s Random seed: 1710447476 (automatic)
215s Bitscore output: on
215s Leave status records: no
215s Join neighbors is: off
215s Target memory is: 1.24 GB
215s Retain members is: true
215s Store repeatmap? yes
215s Reverse complement data is generated on the fly
215s Rifts allowed: 0
215s Fuzzy Extension: yes
215s Score by minimum pair: yes
215s Gapped anchors: no
215s Large sequence support is: enabled => seqpos is 8 bytes
215s Murasaki version 1.68.6 (LARGESEQ)
215s Loading NZ_GG705061.fna
215s Read 229103bp (223.73 KBp) in 0.011 seconds (20.6 MBp/s)
215s Done with forward strand (233240bp). Preparing reverse complement...
215s  <-> Reversing metdata.
215s Done.
215s Seq NZ_GG705061.fna loaded. 227.77 KB
215s Loading NZ_GG705061.gbk
215s Read 229103bp (223.73 KBp) in 0.015 seconds (14.8 MBp/s)
215s Done with forward strand (233240bp). Preparing reverse complement...
215s  <-> Reversing metdata.
215s Done.
215s Seq NZ_GG705061.gbk loaded. 227.77 KB
215s Sequence loading took: 0.026 seconds
215s Forward frequencies:  A:28.2371%  C:22.8212%  G:21.0028%  T:27.939%
215s Global base frequencies:  A/T:56.176%  C/G:43.824%
215s Pat: 3 bases long with weight 2
215s    1 101 
215s Computing hash parameters...
215s Using 4 hashbits
215s  0%......... (T -0.120 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 91%........
215s Acceptable hash function found after 1000 cycles.
215s Best uses 2/2 bases and has 0 empties from 2 inputs.
215s Score: 0.96875 (cf. worst: -4.51562)
215s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
215s Total correlation penalty: 0
215s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
215s                                             10
215s                                             ==
215s w[ 0]>>29:                                 -.C
215s w[ 0]>>30:                                  A.-
215s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
215s Ecolist (optimistic): Expcted entries per list: 16
215s Ecolist (optimistic): Minimum chunks per list: 3
215s Would take minimum 256.000000 bytes to make perfect hash.
215s Hashing 894.93 KB of sequence requires: 
215s  ~ linear (in seq length) hashing cost of 2.29 MB
215s  ~ linear (in seq length) expected anchor cost of 21.35 MB
215s Initial hash table uses: 256 bytes (4 bits, 16 entries)
215s Expected memory usage (without anchors): 2.29 MB
215s Expected memory usage (with anchors): 23.65 MB
215s Hash parameters computed in 0.133 seconds
215s Creating storage structures: 16 entries in 256 bytes space.
215s Storage structures created in: 0.000 seconds
215s 
215s Hashing NZ_GG705061.fna forwards
215s  0%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 10%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 20%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 30%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 40%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 50%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 60%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 70%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 90%.........
215s Hashing NZ_GG705061.fna backwards
215s  0%......... (T -0.021 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 10%......... (T -0.019 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 20%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 30%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 40%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 50%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 60%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 70%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 90%.........
215s Hashing NZ_GG705061.gbk forwards
215s  0%......... (T -0.022 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 10%......... (T -0.019 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 20%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 30%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 40%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 50%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 60%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 70%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 90%.........
215s Hashing NZ_GG705061.gbk backwards
215s  0%......... (T -0.023 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 10%......... (T -0.020 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 20%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 30%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 40%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 50%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 60%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 70%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:56 2024
215s 90%.........
215s Initial hashing took: 0.086 seconds
215s Extracting anchors from hash-space.
215s  (T -0.975 seconds) ETA: Thu Mar 14 20:17:57 2024
215s  6%. (T -0.624 seconds) ETA: Thu Mar 14 20:17:57 2024
215s 18%. (T -0.578 seconds) ETA: Thu Mar 14 20:17:57 2024
215s 31%. (T -0.476 seconds) ETA: Thu Mar 14 20:17:57 2024
215s 43%. (T -0.392 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 56%. (T -0.283 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 68%. (T -0.167 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 81%. (T -0.060 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 93%.
216s Anchor extraction completed in: 0.841 seconds
216s Total anchors: 0
216s Anchor extraction + merge time: 0.841 seconds
216s Total processing time: 1.087 seconds
216s Writing anchors...
216s Total seeds used in anchors: 16
216s Hash performance:
216s  Keys used: 16 out of 16 possible (100.00%).
216s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
216s  Average pigeons per pigeon hole: 1
216s Writing 16 repeats...Output writing finished in: 0.128 seconds
216s Total time: 1.214 seconds
216s Murasaki finished!
216s PASSED MURASAKI
216s 
216s Testing Genepare on NZ_GG705061.fna
216s 1001
216s PASSED GENEPARSE
216s 
216s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
216s Testing mbfa on NZ_GG705061.fna
216s PASSED mbfa
216s 
216s Test Murasaki on NZ_GG705062.fna
216s Verbosity level is: 0
216s Writing to: output/test
216s Pattern is: 101
216s Max usable hash bits: 27
216s Hit filter is: 0
216s Hash table type is: EcoHash
216s Hashing every: 1 base
216s Histogram detail is: 0
216s Hashing function is: 3
216s Collision profiling is: disabled
216s Repeats are: unmasked
216s Mergefilter is at: 100
216s Random seed: 1710447477 (automatic)
216s Bitscore output: on
216s Leave status records: no
216s Join neighbors is: off
216s Target memory is: 1.24 GB
216s Retain members is: true
216s Store repeatmap? yes
216s Reverse complement data is generated on the fly
216s Rifts allowed: 0
216s Fuzzy Extension: yes
216s Score by minimum pair: yes
216s Gapped anchors: no
216s Large sequence support is: enabled => seqpos is 8 bytes
216s Murasaki version 1.68.6 (LARGESEQ)
216s Loading NZ_GG705062.fna
216s Read 174324bp (170.24 KBp) in 0.008 seconds (20.1 MBp/s)
216s Done with forward strand (181688bp). Preparing reverse complement...
216s  <-> Reversing metdata.
216s Done.
216s Seq NZ_GG705062.fna loaded. 177.43 KB
216s Loading NZ_GG705062.gbk
216s Read 174324bp (170.24 KBp) in 0.012 seconds (14.3 MBp/s)
216s Done with forward strand (181688bp). Preparing reverse complement...
216s  <-> Reversing metdata.
216s Done.
216s Seq NZ_GG705062.gbk loaded. 177.43 KB
216s Sequence loading took: 0.021 seconds
216s Forward frequencies:  A:28.8004%  C:19.6749%  G:21.6212%  T:29.9035%
216s Global base frequencies:  A/T:58.7039%  C/G:41.2961%
216s Pat: 3 bases long with weight 2
216s    1 101 
216s Computing hash parameters...
216s Using 4 hashbits
216s  0%......... (T -0.115 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 10%......... (T -0.103 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 20%......... (T -0.090 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 30%......... (T -0.078 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 40%......... (T -0.065 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 50%......... (T -0.052 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 91%........
216s Acceptable hash function found after 1000 cycles.
216s Best uses 2/2 bases and has 0 empties from 2 inputs.
216s Score: 0.96875 (cf. worst: -4.51562)
216s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
216s Total correlation penalty: 0
216s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
216s                                             10
216s                                             ==
216s w[ 0]>>29:                                 -.C
216s w[ 0]>>30:                                  A.-
216s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
216s Ecolist (optimistic): Expcted entries per list: 16
216s Ecolist (optimistic): Minimum chunks per list: 3
216s Would take minimum 256.000000 bytes to make perfect hash.
216s Hashing 680.95 KB of sequence requires: 
216s  ~ linear (in seq length) hashing cost of 1.75 MB
216s  ~ linear (in seq length) expected anchor cost of 16.63 MB
216s Initial hash table uses: 256 bytes (4 bits, 16 entries)
216s Expected memory usage (without anchors): 1.75 MB
216s Expected memory usage (with anchors): 18.38 MB
216s Hash parameters computed in 0.132 seconds
216s Creating storage structures: 16 entries in 256 bytes space.
216s Storage structures created in: 0.000 seconds
216s 
216s Hashing NZ_GG705062.fna forwards
216s  0%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 10%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 20%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 30%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 40%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 50%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 60%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 90%.........
216s Hashing NZ_GG705062.fna backwards
216s  0%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 10%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 20%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 30%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 40%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 50%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 60%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 90%.........
216s Hashing NZ_GG705062.gbk forwards
216s  0%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 10%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 20%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 30%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 40%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 50%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 60%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 90%.........
216s Hashing NZ_GG705062.gbk backwards
216s  0%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 10%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 20%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 30%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 40%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 50%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 60%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:57 2024
216s 90%.........
216s Initial hashing took: 0.065 seconds
216s Extracting anchors from hash-space.
216s  (T -0.611 seconds) ETA: Thu Mar 14 20:17:58 2024
216s  6%. (T -0.450 seconds) ETA: Thu Mar 14 20:17:58 2024
216s 18%. (T -0.425 seconds) ETA: Thu Mar 14 20:17:58 2024
216s 31%. (T -0.356 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 43%. (T -0.296 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 56%. (T -0.211 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 68%. (T -0.128 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 81%. (T -0.045 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 93%.
217s Anchor extraction completed in: 0.627 seconds
217s Total anchors: 0
217s Anchor extraction + merge time: 0.627 seconds
217s Total processing time: 0.845 seconds
217s Writing anchors...
217s Total seeds used in anchors: 16
217s Hash performance:
217s  Keys used: 16 out of 16 possible (100.00%).
217s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
217s  Average pigeons per pigeon hole: 1
217s Writing 16 repeats...Output writing finished in: 0.098 seconds
217s Total time: 0.943 seconds
217s Murasaki finished!
217s PASSED MURASAKI
217s 
217s Testing Genepare on NZ_GG705062.fna
217s 1001
217s PASSED GENEPARSE
217s 
217s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
217s Testing mbfa on NZ_GG705062.fna
217s PASSED mbfa
217s 
217s Test Murasaki on NZ_GG705063.fna
217s Verbosity level is: 0
217s Writing to: output/test
217s Pattern is: 101
217s Max usable hash bits: 27
217s Hit filter is: 0
217s Hash table type is: EcoHash
217s Hashing every: 1 base
217s Histogram detail is: 0
217s Hashing function is: 3
217s Collision profiling is: disabled
217s Repeats are: unmasked
217s Mergefilter is at: 100
217s Random seed: 1710447478 (automatic)
217s Bitscore output: on
217s Leave status records: no
217s Join neighbors is: off
217s Target memory is: 1.24 GB
217s Retain members is: true
217s Store repeatmap? yes
217s Reverse complement data is generated on the fly
217s Rifts allowed: 0
217s Fuzzy Extension: yes
217s Score by minimum pair: yes
217s Gapped anchors: no
217s Large sequence support is: enabled => seqpos is 8 bytes
217s Murasaki version 1.68.6 (LARGESEQ)
217s Loading NZ_GG705063.fna
217s Read 169631bp (165.66 KBp) in 0.008 seconds (21.1 MBp/s)
217s Done with forward strand (171684bp). Preparing reverse complement...
217s  <-> Reversing metdata.
217s Done.
217s Seq NZ_GG705063.fna loaded. 167.66 KB
217s Loading NZ_GG705063.gbk
217s Read 169631bp (165.66 KBp) in 0.011 seconds (15.0 MBp/s)
217s Done with forward strand (171684bp). Preparing reverse complement...
217s  <-> Reversing metdata.
217s Done.
217s Seq NZ_GG705063.gbk loaded. 167.66 KB
217s Sequence loading took: 0.019 seconds
217s Forward frequencies:  A:27.9294%  C:20.6572%  G:23.2847%  T:28.1287%
217s Global base frequencies:  A/T:56.0581%  C/G:43.9419%
217s Pat: 3 bases long with weight 2
217s    1 101 
217s Computing hash parameters...
217s Using 4 hashbits
217s  0%......... (T -0.122 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 91%........
217s Acceptable hash function found after 1000 cycles.
217s Best uses 2/2 bases and has 0 empties from 2 inputs.
217s Score: 0.96875 (cf. worst: -4.51562)
217s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
217s Total correlation penalty: 0
217s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
217s                                             10
217s                                             ==
217s w[ 0]>>29:                                 -.C
217s w[ 0]>>30:                                  A.-
217s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
217s Ecolist (optimistic): Expcted entries per list: 16
217s Ecolist (optimistic): Minimum chunks per list: 3
217s Would take minimum 256.000000 bytes to make perfect hash.
217s Hashing 662.62 KB of sequence requires: 
217s  ~ linear (in seq length) hashing cost of 1.70 MB
217s  ~ linear (in seq length) expected anchor cost of 15.72 MB
217s Initial hash table uses: 256 bytes (4 bits, 16 entries)
217s Expected memory usage (without anchors): 1.70 MB
217s Expected memory usage (with anchors): 17.42 MB
217s Hash parameters computed in 0.135 seconds
217s Creating storage structures: 16 entries in 256 bytes space.
217s Storage structures created in: 0.000 seconds
217s 
217s Hashing NZ_GG705063.fna forwards
217s  0%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 10%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 20%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 30%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 40%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 50%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 60%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 90%.........
217s Hashing NZ_GG705063.fna backwards
217s  0%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 10%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 20%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 30%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 40%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 50%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 60%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 90%.........
217s Hashing NZ_GG705063.gbk forwards
217s  0%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 10%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 20%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 30%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 40%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 50%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 60%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 90%.........
217s Hashing NZ_GG705063.gbk backwards
217s  0%......... (T -0.019 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 10%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 20%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 30%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 40%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 50%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 60%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:58 2024
217s 90%.........
217s Initial hashing took: 0.067 seconds
217s Extracting anchors from hash-space.
217s  (T -0.659 seconds) ETA: Thu Mar 14 20:17:59 2024
217s  6%. (T -0.494 seconds) ETA: Thu Mar 14 20:17:59 2024
217s 18%. (T -0.426 seconds) ETA: Thu Mar 14 20:17:59 2024
217s 31%. (T -0.355 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 43%. (T -0.288 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 56%. (T -0.207 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 68%. (T -0.124 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 81%. (T -0.044 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 93%.
218s Anchor extraction completed in: 0.618 seconds
218s Total anchors: 0
218s Anchor extraction + merge time: 0.618 seconds
218s Total processing time: 0.840 seconds
218s Writing anchors...
218s Total seeds used in anchors: 16
218s Hash performance:
218s  Keys used: 16 out of 16 possible (100.00%).
218s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
218s  Average pigeons per pigeon hole: 1
218s Writing 16 repeats...Output writing finished in: 0.098 seconds
218s Total time: 0.938 seconds
218s Murasaki finished!
218s PASSED MURASAKI
218s 
218s Testing Genepare on NZ_GG705063.fna
218s 1001
218s PASSED GENEPARSE
218s 
218s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
218s Testing mbfa on NZ_GG705063.fna
218s PASSED mbfa
218s 
218s Test Murasaki on NZ_GG705064.fna
218s Verbosity level is: 0
218s Writing to: output/test
218s Pattern is: 101
218s Max usable hash bits: 27
218s Hit filter is: 0
218s Hash table type is: EcoHash
218s Hashing every: 1 base
218s Histogram detail is: 0
218s Hashing function is: 3
218s Collision profiling is: disabled
218s Repeats are: unmasked
218s Mergefilter is at: 100
218s Random seed: 1710447479 (automatic)
218s Bitscore output: on
218s Leave status records: no
218s Join neighbors is: off
218s Target memory is: 1.24 GB
218s Retain members is: true
218s Store repeatmap? yes
218s Reverse complement data is generated on the fly
218s Rifts allowed: 0
218s Fuzzy Extension: yes
218s Score by minimum pair: yes
218s Gapped anchors: no
218s Large sequence support is: enabled => seqpos is 8 bytes
218s Murasaki version 1.68.6 (LARGESEQ)
218s Loading NZ_GG705064.fna
218s Read 165027bp (161.16 KBp) in 0.008 seconds (19.9 MBp/s)
218s Done with forward strand (167894bp). Preparing reverse complement...
218s  <-> Reversing metdata.
218s Done.
218s Seq NZ_GG705064.fna loaded. 163.96 KB
218s Loading NZ_GG705064.gbk
218s Read 165027bp (161.16 KBp) in 0.011 seconds (14.2 MBp/s)
218s Done with forward strand (167894bp). Preparing reverse complement...
218s  <-> Reversing metdata.
218s Done.
218s Seq NZ_GG705064.gbk loaded. 163.96 KB
218s Sequence loading took: 0.020 seconds
218s Forward frequencies:  A:27.6058%  C:21.1172%  G:23.1338%  T:28.1433%
218s Global base frequencies:  A/T:55.7491%  C/G:44.2509%
218s Pat: 3 bases long with weight 2
218s    1 101 
218s Computing hash parameters...
218s Using 4 hashbits
218s  0%......... (T -0.127 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 10%......... (T -0.112 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 20%......... (T -0.097 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 30%......... (T -0.083 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 40%......... (T -0.070 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 50%......... (T -0.055 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 70%......... (T -0.028 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 91%........
218s Acceptable hash function found after 1000 cycles.
218s Best uses 2/2 bases and has 0 empties from 2 inputs.
218s Score: 0.96875 (cf. worst: -4.51562)
218s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
218s Total correlation penalty: 0
218s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
218s                                             10
218s                                             ==
218s w[ 0]>>29:                                 -.C
218s w[ 0]>>30:                                  A.-
218s Ecolist (optimistic): (seqbits: 2 idxbits: 19 minBlocks: 1 initblocks: 1)
218s Ecolist (optimistic): Expcted entries per list: 16
218s Ecolist (optimistic): Minimum chunks per list: 3
218s Would take minimum 256.000000 bytes to make perfect hash.
218s Hashing 644.64 KB of sequence requires: 
218s  ~ linear (in seq length) hashing cost of 1.65 MB
218s  ~ linear (in seq length) expected anchor cost of 15.37 MB
218s Initial hash table uses: 256 bytes (4 bits, 16 entries)
218s Expected memory usage (without anchors): 1.65 MB
218s Expected memory usage (with anchors): 17.02 MB
218s Hash parameters computed in 0.139 seconds
218s Creating storage structures: 16 entries in 256 bytes space.
218s Storage structures created in: 0.000 seconds
218s 
218s Hashing NZ_GG705064.fna forwards
218s  0%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 10%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 20%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 30%......... (T -0.009 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 40%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 50%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 60%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 90%.........
218s Hashing NZ_GG705064.fna backwards
218s  0%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 10%......... (T -0.016 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 20%......... (T -0.014 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 30%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 40%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 50%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 60%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 90%.........
218s Hashing NZ_GG705064.gbk forwards
218s  0%......... (T -0.018 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 10%......... (T -0.015 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 20%......... (T -0.013 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 30%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 40%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 50%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 60%......... (T -0.006 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 70%......... (T -0.004 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 90%.........
218s Hashing NZ_GG705064.gbk backwards
218s  0%......... (T -0.017 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 10%......... (T -0.012 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 20%......... (T -0.011 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 30%......... (T -0.010 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 40%......... (T -0.008 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 50%......... (T -0.007 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 60%......... (T -0.005 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:17:59 2024
218s 90%.........
218s Initial hashing took: 0.066 seconds
218s Extracting anchors from hash-space.
218s  (T -0.616 seconds) ETA: Thu Mar 14 20:18:00 2024
218s  6%. (T -0.479 seconds) ETA: Thu Mar 14 20:18:00 2024
218s 18%. (T -0.417 seconds) ETA: Thu Mar 14 20:18:00 2024
218s 31%. (T -0.347 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 43%. (T -0.280 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 56%. (T -0.201 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 68%. (T -0.120 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 81%. (T -0.042 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 93%.
219s Anchor extraction completed in: 0.600 seconds
219s Total anchors: 0
219s Anchor extraction + merge time: 0.600 seconds
219s Total processing time: 0.826 seconds
219s Writing anchors...
219s Total seeds used in anchors: 16
219s Hash performance:
219s  Keys used: 16 out of 16 possible (100.00%).
219s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
219s  Average pigeons per pigeon hole: 1
219s Writing 16 repeats...Output writing finished in: 0.094 seconds
219s Total time: 0.920 seconds
219s Murasaki finished!
219s PASSED MURASAKI
219s 
219s Testing Genepare on NZ_GG705064.fna
219s 1001
219s PASSED GENEPARSE
219s 
219s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
219s Testing mbfa on NZ_GG705064.fna
219s PASSED mbfa
219s 
219s Test Murasaki on NZ_GG705065.fna
219s Verbosity level is: 0
219s Writing to: output/test
219s Pattern is: 101
219s Max usable hash bits: 27
219s Hit filter is: 0
219s Hash table type is: EcoHash
219s Hashing every: 1 base
219s Histogram detail is: 0
219s Hashing function is: 3
219s Collision profiling is: disabled
219s Repeats are: unmasked
219s Mergefilter is at: 100
219s Random seed: 1710447480 (automatic)
219s Bitscore output: on
219s Leave status records: no
219s Join neighbors is: off
219s Target memory is: 1.24 GB
219s Retain members is: true
219s Store repeatmap? yes
219s Reverse complement data is generated on the fly
219s Rifts allowed: 0
219s Fuzzy Extension: yes
219s Score by minimum pair: yes
219s Gapped anchors: no
219s Large sequence support is: enabled => seqpos is 8 bytes
219s Murasaki version 1.68.6 (LARGESEQ)
219s Loading NZ_GG705065.fna
219s Read 123593bp (120.70 KBp) in 0.006 seconds (19.5 MBp/s)
219s Done with forward strand (130343bp). Preparing reverse complement...
219s  <-> Reversing metdata.
219s Done.
219s Seq NZ_GG705065.fna loaded. 127.29 KB
219s Loading NZ_GG705065.gbk
219s Read 123593bp (120.70 KBp) in 0.009 seconds (13.7 MBp/s)
219s Done with forward strand (130343bp). Preparing reverse complement...
219s  <-> Reversing metdata.
219s Done.
219s Seq NZ_GG705065.gbk loaded. 127.29 KB
219s Sequence loading took: 0.015 seconds
219s Forward frequencies:  A:28.2694%  C:23.0272%  G:21.2504%  T:27.453%
219s Global base frequencies:  A/T:55.7224%  C/G:44.2776%
219s Pat: 3 bases long with weight 2
219s    1 101 
219s Computing hash parameters...
219s Using 4 hashbits
219s  0%......... (T -0.125 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 40%......... (T -0.068 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 91%........
219s Acceptable hash function found after 1000 cycles.
219s Best uses 2/2 bases and has 0 empties from 2 inputs.
219s Score: 0.96875 (cf. worst: -4.51562)
219s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
219s Total correlation penalty: 0
219s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
219s                                             10
219s                                             ==
219s w[ 0]>>29:                                 -.C
219s w[ 0]>>30:                                  A.-
219s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
219s Ecolist (optimistic): Expcted entries per list: 15
219s Ecolist (optimistic): Minimum chunks per list: 3
219s Would take minimum 256.000000 bytes to make perfect hash.
219s Hashing 482.79 KB of sequence requires: 
219s  ~ linear (in seq length) hashing cost of 1.18 MB
219s  ~ linear (in seq length) expected anchor cost of 11.93 MB
219s Initial hash table uses: 256 bytes (4 bits, 16 entries)
219s Expected memory usage (without anchors): 1.18 MB
219s Expected memory usage (with anchors): 13.11 MB
219s Hash parameters computed in 0.137 seconds
219s Creating storage structures: 16 entries in 256 bytes space.
219s Storage structures created in: 0.000 seconds
219s 
219s Hashing NZ_GG705065.fna forwards
219s  0%......... (T -0.014 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 10%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 20%......... (T -0.011 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 30%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 40%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 50%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 60%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 90%.........
219s Hashing NZ_GG705065.fna backwards
219s  0%......... (T -0.015 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 10%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 20%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 30%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 40%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 50%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 60%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 90%.........
219s Hashing NZ_GG705065.gbk forwards
219s  0%......... (T -0.015 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 10%......... (T -0.013 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 20%......... (T -0.011 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 30%......... (T -0.010 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 40%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 50%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 60%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 70%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 90%.........
219s Hashing NZ_GG705065.gbk backwards
219s  0%......... (T -0.021 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 10%......... (T -0.022 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 20%......... (T -0.017 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 30%......... (T -0.013 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 40%......... (T -0.010 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 50%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 60%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 70%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 80%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:00 2024
219s 90%.........
219s Initial hashing took: 0.057 seconds
219s Extracting anchors from hash-space.
219s  (T -0.617 seconds) ETA: Thu Mar 14 20:18:01 2024
219s  6%. (T -0.419 seconds) ETA: Thu Mar 14 20:18:01 2024
219s 18%. (T -0.349 seconds) ETA: Thu Mar 14 20:18:01 2024
219s 31%. (T -0.261 seconds) ETA: Thu Mar 14 20:18:01 2024
219s 43%. (T -0.194 seconds) ETA: Thu Mar 14 20:18:01 2024
219s 56%. (T -0.136 seconds) ETA: Thu Mar 14 20:18:01 2024
219s 68%. (T -0.082 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 81%. (T -0.030 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 93%.
220s Anchor extraction completed in: 0.433 seconds
220s Total anchors: 0
220s Anchor extraction + merge time: 0.433 seconds
220s Total processing time: 0.643 seconds
220s Writing anchors...
220s Total seeds used in anchors: 16
220s Hash performance:
220s  Keys used: 16 out of 16 possible (100.00%).
220s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
220s  Average pigeons per pigeon hole: 1
220s Writing 16 repeats...Output writing finished in: 0.071 seconds
220s Total time: 0.714 seconds
220s Murasaki finished!
220s PASSED MURASAKI
220s 
220s Testing Genepare on NZ_GG705065.fna
220s 1001
220s PASSED GENEPARSE
220s 
220s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
220s Testing mbfa on NZ_GG705065.fna
220s PASSED mbfa
220s 
220s Test Murasaki on NZ_GG705066.fna
220s Verbosity level is: 0
220s Writing to: output/test
220s Pattern is: 101
220s Max usable hash bits: 27
220s Hit filter is: 0
220s Hash table type is: EcoHash
220s Hashing every: 1 base
220s Histogram detail is: 0
220s Hashing function is: 3
220s Collision profiling is: disabled
220s Repeats are: unmasked
220s Mergefilter is at: 100
220s Random seed: 1710447481 (automatic)
220s Bitscore output: on
220s Leave status records: no
220s Join neighbors is: off
220s Target memory is: 1.24 GB
220s Retain members is: true
220s Store repeatmap? yes
220s Reverse complement data is generated on the fly
220s Rifts allowed: 0
220s Fuzzy Extension: yes
220s Score by minimum pair: yes
220s Gapped anchors: no
220s Large sequence support is: enabled => seqpos is 8 bytes
220s Murasaki version 1.68.6 (LARGESEQ)
220s Loading NZ_GG705066.fna
220s Read 102039bp (99.65 KBp) in 0.005 seconds (19.2 MBp/s)
220s Done with forward strand (106208bp). Preparing reverse complement...
220s  <-> Reversing metdata.
220s Done.
220s Seq NZ_GG705066.fna loaded. 103.72 KB
220s Loading NZ_GG705066.gbk
220s Read 102039bp (99.65 KBp) in 0.007 seconds (14.2 MBp/s)
220s Done with forward strand (106208bp). Preparing reverse complement...
220s  <-> Reversing metdata.
220s Done.
220s Seq NZ_GG705066.gbk loaded. 103.72 KB
220s Sequence loading took: 0.013 seconds
220s Forward frequencies:  A:29.277%  C:20.206%  G:22.6257%  T:27.8913%
220s Global base frequencies:  A/T:57.1683%  C/G:42.8317%
220s Pat: 3 bases long with weight 2
220s    1 101 
220s Computing hash parameters...
220s Using 4 hashbits
220s  0%......... (T -0.124 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 30%......... (T -0.082 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 40%......... (T -0.068 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 50%......... (T -0.055 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 70%......... (T -0.028 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 91%........
220s Acceptable hash function found after 1000 cycles.
220s Best uses 2/2 bases and has 0 empties from 2 inputs.
220s Score: 0.96875 (cf. worst: -4.51562)
220s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
220s Total correlation penalty: 0
220s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
220s                                             10
220s                                             ==
220s w[ 0]>>29:                                 -.C
220s w[ 0]>>30:                                  A.-
220s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
220s Ecolist (optimistic): Expcted entries per list: 15
220s Ecolist (optimistic): Minimum chunks per list: 3
220s Would take minimum 256.000000 bytes to make perfect hash.
220s Hashing 398.59 KB of sequence requires: 
220s  ~ linear (in seq length) hashing cost of 996.46 KB
220s  ~ linear (in seq length) expected anchor cost of 9.72 MB
220s Initial hash table uses: 256 bytes (4 bits, 16 entries)
220s Expected memory usage (without anchors): 996.71 KB
220s Expected memory usage (with anchors): 10.70 MB
220s Hash parameters computed in 0.139 seconds
220s Creating storage structures: 16 entries in 256 bytes space.
220s Storage structures created in: 0.000 seconds
220s 
220s Hashing NZ_GG705066.fna forwards
220s  0%......... (T -0.013 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 10%......... (T -0.011 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 20%......... (T -0.010 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 30%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 40%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 50%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 60%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 90%.........
220s Hashing NZ_GG705066.fna backwards
220s  0%......... (T -0.014 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 10%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 20%......... (T -0.010 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 30%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 40%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 50%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 60%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 90%.........
220s Hashing NZ_GG705066.gbk forwards
220s  0%......... (T -0.014 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 10%......... (T -0.011 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 20%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 30%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 40%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 50%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 60%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 90%.........
220s Hashing NZ_GG705066.gbk backwards
220s  0%......... (T -0.011 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 10%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 20%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 30%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 40%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 50%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 60%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 90%.........
220s Initial hashing took: 0.046 seconds
220s Extracting anchors from hash-space.
220s  (T -0.231 seconds) ETA: Thu Mar 14 20:18:01 2024
220s  6%. (T -0.165 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 18%. (T -0.167 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 31%. (T -0.139 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 43%. (T -0.113 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 56%. (T -0.082 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 68%. (T -0.049 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 81%. (T -0.017 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 93%.
220s Anchor extraction completed in: 0.246 seconds
220s Total anchors: 0
220s Anchor extraction + merge time: 0.246 seconds
220s Total processing time: 0.444 seconds
220s Writing anchors...
220s Total seeds used in anchors: 16
220s Hash performance:
220s  Keys used: 16 out of 16 possible (100.00%).
220s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
220s  Average pigeons per pigeon hole: 1
220s Writing 16 repeats...Output writing finished in: 0.059 seconds
220s Total time: 0.504 seconds
220s Murasaki finished!
220s PASSED MURASAKI
220s 
220s Testing Genepare on NZ_GG705066.fna
220s 1001
220s PASSED GENEPARSE
220s 
220s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
220s Testing mbfa on NZ_GG705066.fna
220s PASSED mbfa
220s 
220s Test Murasaki on NZ_GG705067.fna
220s Verbosity level is: 0
220s Writing to: output/test
220s Pattern is: 101
220s Max usable hash bits: 27
220s Hit filter is: 0
220s Hash table type is: EcoHash
220s Hashing every: 1 base
220s Histogram detail is: 0
220s Hashing function is: 3
220s Collision profiling is: disabled
220s Repeats are: unmasked
220s Mergefilter is at: 100
220s Random seed: 1710447481 (automatic)
220s Bitscore output: on
220s Leave status records: no
220s Join neighbors is: off
220s Target memory is: 1.24 GB
220s Retain members is: true
220s Store repeatmap? yes
220s Reverse complement data is generated on the fly
220s Rifts allowed: 0
220s Fuzzy Extension: yes
220s Score by minimum pair: yes
220s Gapped anchors: no
220s Large sequence support is: enabled => seqpos is 8 bytes
220s Murasaki version 1.68.6 (LARGESEQ)
220s Loading NZ_GG705067.fna
220s Read 92138bp (89.98 KBp) in 0.005 seconds (16.6 MBp/s)
220s Done with forward strand (99840bp). Preparing reverse complement...
220s  <-> Reversing metdata.
220s Done.
220s Seq NZ_GG705067.fna loaded. 97.50 KB
220s Loading NZ_GG705067.gbk
220s Read 92138bp (89.98 KBp) in 0.007 seconds (12.4 MBp/s)
220s Done with forward strand (99840bp). Preparing reverse complement...
220s  <-> Reversing metdata.
220s Done.
220s Seq NZ_GG705067.gbk loaded. 97.50 KB
220s Sequence loading took: 0.013 seconds
220s Forward frequencies:  A:28.7753%  C:20.1448%  G:22.0311%  T:29.0488%
220s Global base frequencies:  A/T:57.8241%  C/G:42.1759%
220s Pat: 3 bases long with weight 2
220s    1 101 
220s Computing hash parameters...
220s Using 4 hashbits
220s  0%......... (T -0.136 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 10%......... (T -0.116 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 20%......... (T -0.100 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 30%......... (T -0.087 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 40%......... (T -0.074 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 50%......... (T -0.059 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 60%......... (T -0.044 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 70%......... (T -0.030 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 80%......... (T -0.013 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 91%........
220s Acceptable hash function found after 1000 cycles.
220s Best uses 2/2 bases and has 0 empties from 2 inputs.
220s Score: 0.96875 (cf. worst: -4.51562)
220s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
220s Total correlation penalty: 0
220s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
220s                                             10
220s                                             ==
220s w[ 0]>>29:                                 -.C
220s w[ 0]>>30:                                  A.-
220s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
220s Ecolist (optimistic): Expcted entries per list: 15
220s Ecolist (optimistic): Minimum chunks per list: 3
220s Would take minimum 256.000000 bytes to make perfect hash.
220s Hashing 359.91 KB of sequence requires: 
220s  ~ linear (in seq length) hashing cost of 899.79 KB
220s  ~ linear (in seq length) expected anchor cost of 9.14 MB
220s Initial hash table uses: 256 bytes (4 bits, 16 entries)
220s Expected memory usage (without anchors): 900.04 KB
220s Expected memory usage (with anchors): 10.02 MB
220s Hash parameters computed in 0.150 seconds
220s Creating storage structures: 16 entries in 256 bytes space.
220s Storage structures created in: 0.000 seconds
220s 
220s Hashing NZ_GG705067.fna forwards
220s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 10%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 90%.........
220s Hashing NZ_GG705067.fna backwards
220s  0%......... (T -0.013 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 10%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 20%......... (T -0.010 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 30%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 40%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 50%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 60%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 90%.........
220s Hashing NZ_GG705067.gbk forwards
220s  0%......... (T -0.014 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 10%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 20%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 30%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 40%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 50%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 60%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 90%.........
220s Hashing NZ_GG705067.gbk backwards
220s  0%......... (T -0.015 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 10%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 20%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 30%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 40%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 50%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 60%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:01 2024
220s 90%.........
220s Initial hashing took: 0.043 seconds
220s Extracting anchors from hash-space.
220s  (T -0.235 seconds) ETA: Thu Mar 14 20:18:02 2024
220s  6%. (T -0.162 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 18%. (T -0.162 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 31%. (T -0.134 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 43%. (T -0.112 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 56%. (T -0.081 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 68%. (T -0.049 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 81%. (T -0.017 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 93%.
221s Anchor extraction completed in: 0.245 seconds
221s Total anchors: 0
221s Anchor extraction + merge time: 0.245 seconds
221s Total processing time: 0.452 seconds
221s Writing anchors...
221s Total seeds used in anchors: 16
221s Hash performance:
221s  Keys used: 16 out of 16 possible (100.00%).
221s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
221s  Average pigeons per pigeon hole: 1
221s Writing 16 repeats...Output writing finished in: 0.057 seconds
221s Total time: 0.509 seconds
221s Murasaki finished!
221s PASSED MURASAKI
221s 
221s Testing Genepare on NZ_GG705067.fna
221s 1001
221s PASSED GENEPARSE
221s 
221s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
221s Testing mbfa on NZ_GG705067.fna
221s PASSED mbfa
221s 
221s Test Murasaki on NZ_GG705068.fna
221s Verbosity level is: 0
221s Writing to: output/test
221s Pattern is: 101
221s Max usable hash bits: 27
221s Hit filter is: 0
221s Hash table type is: EcoHash
221s Hashing every: 1 base
221s Histogram detail is: 0
221s Hashing function is: 3
221s Collision profiling is: disabled
221s Repeats are: unmasked
221s Mergefilter is at: 100
221s Random seed: 1710447482 (automatic)
221s Bitscore output: on
221s Leave status records: no
221s Join neighbors is: off
221s Target memory is: 1.24 GB
221s Retain members is: true
221s Store repeatmap? yes
221s Reverse complement data is generated on the fly
221s Rifts allowed: 0
221s Fuzzy Extension: yes
221s Score by minimum pair: yes
221s Gapped anchors: no
221s Large sequence support is: enabled => seqpos is 8 bytes
221s Murasaki version 1.68.6 (LARGESEQ)
221s Loading NZ_GG705068.fna
221s Read 74802bp (73.05 KBp) in 0.004 seconds (17.8 MBp/s)
221s Done with forward strand (85653bp). Preparing reverse complement...
221s  <-> Reversing metdata.
221s Done.
221s Seq NZ_GG705068.fna loaded. 83.65 KB
221s Loading NZ_GG705068.gbk
221s Read 74802bp (73.05 KBp) in 0.006 seconds (12.3 MBp/s)
221s Done with forward strand (85653bp). Preparing reverse complement...
221s  <-> Reversing metdata.
221s Done.
221s Seq NZ_GG705068.gbk loaded. 83.65 KB
221s Sequence loading took: 0.011 seconds
221s Forward frequencies:  A:30.0326%  C:20.0289%  G:19.2147%  T:30.7238%
221s Global base frequencies:  A/T:60.7564%  C/G:39.2436%
221s Pat: 3 bases long with weight 2
221s    1 101 
221s Computing hash parameters...
221s Using 4 hashbits
221s  0%......... (T -0.125 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 10%......... (T -0.123 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 20%......... (T -0.112 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 30%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 40%......... (T -0.076 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 50%......... (T -0.063 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 60%......... (T -0.048 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 70%......... (T -0.032 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 80%......... (T -0.014 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 91%........
221s Acceptable hash function found after 1000 cycles.
221s Best uses 2/2 bases and has 0 empties from 2 inputs.
221s Score: 0.96875 (cf. worst: -4.51562)
221s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
221s Total correlation penalty: 0
221s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
221s                                             10
221s                                             ==
221s w[ 0]>>29:                                 -.C
221s w[ 0]>>30:                                  A.-
221s Ecolist (optimistic): (seqbits: 2 idxbits: 18 minBlocks: 1 initblocks: 1)
221s Ecolist (optimistic): Expcted entries per list: 15
221s Ecolist (optimistic): Minimum chunks per list: 3
221s Would take minimum 256.000000 bytes to make perfect hash.
221s Hashing 292.20 KB of sequence requires: 
221s  ~ linear (in seq length) hashing cost of 730.49 KB
221s  ~ linear (in seq length) expected anchor cost of 7.84 MB
221s Initial hash table uses: 256 bytes (4 bits, 16 entries)
221s Expected memory usage (without anchors): 730.74 KB
221s Expected memory usage (with anchors): 8.56 MB
221s Hash parameters computed in 0.158 seconds
221s Creating storage structures: 16 entries in 256 bytes space.
221s Storage structures created in: 0.000 seconds
221s 
221s Hashing NZ_GG705068.fna forwards
221s  0%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 90%.........
221s Hashing NZ_GG705068.fna backwards
221s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 10%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 40%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 50%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 60%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 90%.........
221s Hashing NZ_GG705068.gbk forwards
221s  0%......... (T -0.011 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 10%......... (T -0.011 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 20%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 30%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 40%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 50%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 60%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 90%.........
221s Hashing NZ_GG705068.gbk backwards
221s  0%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 10%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 20%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 50%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 90%.........
221s Initial hashing took: 0.037 seconds
221s Extracting anchors from hash-space.
221s  (T -0.279 seconds) ETA: Thu Mar 14 20:18:02 2024
221s  6%. (T -0.335 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 18%. (T -0.223 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 31%. (T -0.180 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 43%. (T -0.125 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 56%. (T -0.090 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 68%. (T -0.050 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 81%. (T -0.020 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 93%.
221s Anchor extraction completed in: 0.284 seconds
221s Total anchors: 0
221s Anchor extraction + merge time: 0.284 seconds
221s Total processing time: 0.491 seconds
221s Writing anchors...
221s Total seeds used in anchors: 16
221s Hash performance:
221s  Keys used: 16 out of 16 possible (100.00%).
221s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
221s  Average pigeons per pigeon hole: 1
221s Writing 16 repeats...Output writing finished in: 0.048 seconds
221s Total time: 0.539 seconds
221s Murasaki finished!
221s PASSED MURASAKI
221s 
221s Testing Genepare on NZ_GG705068.fna
221s 1001
221s PASSED GENEPARSE
221s 
221s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
221s Testing mbfa on NZ_GG705068.fna
221s PASSED mbfa
221s 
221s Test Murasaki on NZ_GG705069.fna
221s Verbosity level is: 0
221s Writing to: output/test
221s Pattern is: 101
221s Max usable hash bits: 27
221s Hit filter is: 0
221s Hash table type is: EcoHash
221s Hashing every: 1 base
221s Histogram detail is: 0
221s Hashing function is: 3
221s Collision profiling is: disabled
221s Repeats are: unmasked
221s Mergefilter is at: 100
221s Random seed: 1710447482 (automatic)
221s Bitscore output: on
221s Leave status records: no
221s Join neighbors is: off
221s Target memory is: 1.24 GB
221s Retain members is: true
221s Store repeatmap? yes
221s Reverse complement data is generated on the fly
221s Rifts allowed: 0
221s Fuzzy Extension: yes
221s Score by minimum pair: yes
221s Gapped anchors: no
221s Large sequence support is: enabled => seqpos is 8 bytes
221s Murasaki version 1.68.6 (LARGESEQ)
221s Loading NZ_GG705069.fna
221s Read 49931bp (48.76 KBp) in 0.003 seconds (17.6 MBp/s)
221s Done with forward strand (54571bp). Preparing reverse complement...
221s  <-> Reversing metdata.
221s Done.
221s Seq NZ_GG705069.fna loaded. 53.29 KB
221s Loading NZ_GG705069.gbk
221s Read 49931bp (48.76 KBp) in 0.004 seconds (12.5 MBp/s)
221s Done with forward strand (54571bp). Preparing reverse complement...
221s  <-> Reversing metdata.
221s Done.
221s Seq NZ_GG705069.gbk loaded. 53.29 KB
221s Sequence loading took: 0.007 seconds
221s Forward frequencies:  A:27.7563%  C:21.4616%  G:21.8221%  T:28.96%
221s Global base frequencies:  A/T:56.7163%  C/G:43.2837%
221s Pat: 3 bases long with weight 2
221s    1 101 
221s Computing hash parameters...
221s Using 4 hashbits
221s  0%......... (T -0.125 seconds) ETA: Thu Mar 14 20:18:03 2024
221s 10%......... (T -0.112 seconds) ETA: Thu Mar 14 20:18:03 2024
221s 20%......... (T -0.097 seconds) ETA: Thu Mar 14 20:18:02 2024
221s 30%......... (T -0.086 seconds) ETA: Thu Mar 14 20:18:03 2024
221s 40%......... (T -0.072 seconds) ETA: Thu Mar 14 20:18:03 2024
221s 50%......... (T -0.057 seconds) ETA: Thu Mar 14 20:18:03 2024
221s 60%......... (T -0.043 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.029 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.013 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 91%........
222s Acceptable hash function found after 1000 cycles.
222s Best uses 2/2 bases and has 0 empties from 2 inputs.
222s Score: 0.96875 (cf. worst: -4.51562)
222s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
222s Total correlation penalty: 0
222s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
222s                                             10
222s                                             ==
222s w[ 0]>>29:                                 -.C
222s w[ 0]>>30:                                  A.-
222s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
222s Ecolist (optimistic): Expcted entries per list: 14
222s Ecolist (optimistic): Minimum chunks per list: 3
222s Would take minimum 256.000000 bytes to make perfect hash.
222s Hashing 195.04 KB of sequence requires: 
222s  ~ linear (in seq length) hashing cost of 463.22 KB
222s  ~ linear (in seq length) expected anchor cost of 5.00 MB
222s Initial hash table uses: 256 bytes (4 bits, 16 entries)
222s Expected memory usage (without anchors): 463.47 KB
222s Expected memory usage (with anchors): 5.45 MB
222s Hash parameters computed in 0.147 seconds
222s Creating storage structures: 16 entries in 256 bytes space.
222s Storage structures created in: 0.000 seconds
222s 
222s Hashing NZ_GG705069.fna forwards
222s  0%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Hashing NZ_GG705069.fna backwards
222s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Hashing NZ_GG705069.gbk forwards
222s  0%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Hashing NZ_GG705069.gbk backwards
222s  0%......... (T -0.010 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Initial hashing took: 0.024 seconds
222s Extracting anchors from hash-space.
222s  (T -0.157 seconds) ETA: Thu Mar 14 20:18:03 2024
222s  6%. (T -0.195 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 18%. (T -0.131 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 31%. (T -0.106 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 43%. (T -0.080 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 56%. (T -0.058 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 68%. (T -0.033 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 81%. (T -0.013 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 93%.
222s Anchor extraction completed in: 0.181 seconds
222s Total anchors: 0
222s Anchor extraction + merge time: 0.181 seconds
222s Total processing time: 0.359 seconds
222s Writing anchors...
222s Total seeds used in anchors: 16
222s Hash performance:
222s  Keys used: 16 out of 16 possible (100.00%).
222s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
222s  Average pigeons per pigeon hole: 1
222s Writing 16 repeats...Output writing finished in: 0.031 seconds
222s Total time: 0.390 seconds
222s Murasaki finished!
222s PASSED MURASAKI
222s 
222s Testing Genepare on NZ_GG705069.fna
222s 1001
222s PASSED GENEPARSE
222s 
222s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
222s Testing mbfa on NZ_GG705069.fna
222s PASSED mbfa
222s 
222s Test Murasaki on NZ_GG705070.fna
222s Verbosity level is: 0
222s Writing to: output/test
222s Pattern is: 101
222s Max usable hash bits: 27
222s Hit filter is: 0
222s Hash table type is: EcoHash
222s Hashing every: 1 base
222s Histogram detail is: 0
222s Hashing function is: 3
222s Collision profiling is: disabled
222s Repeats are: unmasked
222s Mergefilter is at: 100
222s Random seed: 1710447483 (automatic)
222s Bitscore output: on
222s Leave status records: no
222s Join neighbors is: off
222s Target memory is: 1.24 GB
222s Retain members is: true
222s Store repeatmap? yes
222s Reverse complement data is generated on the fly
222s Rifts allowed: 0
222s Fuzzy Extension: yes
222s Score by minimum pair: yes
222s Gapped anchors: no
222s Large sequence support is: enabled => seqpos is 8 bytes
222s Murasaki version 1.68.6 (LARGESEQ)
222s Loading NZ_GG705070.fna
222s Read 51237bp (50.04 KBp) in 0.003 seconds (18.5 MBp/s)
222s Done with forward strand (53557bp). Preparing reverse complement...
222s  <-> Reversing metdata.
222s Done.
222s Seq NZ_GG705070.fna loaded. 52.30 KB
222s Loading NZ_GG705070.gbk
222s Read 51237bp (50.04 KBp) in 0.003 seconds (14.5 MBp/s)
222s Done with forward strand (53557bp). Preparing reverse complement...
222s  <-> Reversing metdata.
222s Done.
222s Seq NZ_GG705070.gbk loaded. 52.30 KB
222s Sequence loading took: 0.006 seconds
222s Forward frequencies:  A:30.0915%  C:19.7416%  G:21.1527%  T:29.0142%
222s Global base frequencies:  A/T:59.1057%  C/G:40.8943%
222s Pat: 3 bases long with weight 2
222s    1 101 
222s Computing hash parameters...
222s Using 4 hashbits
222s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 91%........
222s Acceptable hash function found after 1000 cycles.
222s Best uses 2/2 bases and has 0 empties from 2 inputs.
222s Score: 0.96875 (cf. worst: -4.51562)
222s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
222s Total correlation penalty: 0
222s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
222s                                             10
222s                                             ==
222s w[ 0]>>29:                                 -.C
222s w[ 0]>>30:                                  A.-
222s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
222s Ecolist (optimistic): Expcted entries per list: 14
222s Ecolist (optimistic): Minimum chunks per list: 3
222s Would take minimum 256.000000 bytes to make perfect hash.
222s Hashing 200.14 KB of sequence requires: 
222s  ~ linear (in seq length) hashing cost of 475.33 KB
222s  ~ linear (in seq length) expected anchor cost of 4.90 MB
222s Initial hash table uses: 256 bytes (4 bits, 16 entries)
222s Expected memory usage (without anchors): 475.58 KB
222s Expected memory usage (with anchors): 5.37 MB
222s Hash parameters computed in 0.136 seconds
222s Creating storage structures: 16 entries in 256 bytes space.
222s Storage structures created in: 0.000 seconds
222s 
222s Hashing NZ_GG705070.fna forwards
222s  0%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Hashing NZ_GG705070.fna backwards
222s  0%......... (T -0.011 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Hashing NZ_GG705070.gbk forwards
222s  0%......... (T -0.010 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Hashing NZ_GG705070.gbk backwards
222s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Initial hashing took: 0.022 seconds
222s Extracting anchors from hash-space.
222s  (T -0.153 seconds) ETA: Thu Mar 14 20:18:03 2024
222s  6%. (T -0.196 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 18%. (T -0.130 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 31%. (T -0.104 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 43%. (T -0.075 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 56%. (T -0.054 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 68%. (T -0.030 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 81%. (T -0.012 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 93%.
222s Anchor extraction completed in: 0.169 seconds
222s Total anchors: 0
222s Anchor extraction + merge time: 0.169 seconds
222s Total processing time: 0.334 seconds
222s Writing anchors...
222s Total seeds used in anchors: 16
222s Hash performance:
222s  Keys used: 16 out of 16 possible (100.00%).
222s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
222s  Average pigeons per pigeon hole: 1
222s Writing 16 repeats...Output writing finished in: 0.030 seconds
222s Total time: 0.364 seconds
222s Murasaki finished!
222s PASSED MURASAKI
222s 
222s Testing Genepare on NZ_GG705070.fna
222s 1001
222s PASSED GENEPARSE
222s 
222s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
222s Testing mbfa on NZ_GG705070.fna
222s PASSED mbfa
222s 
222s Test Murasaki on NZ_GG705071.fna
222s Verbosity level is: 0
222s Writing to: output/test
222s Pattern is: 101
222s Max usable hash bits: 27
222s Hit filter is: 0
222s Hash table type is: EcoHash
222s Hashing every: 1 base
222s Histogram detail is: 0
222s Hashing function is: 3
222s Collision profiling is: disabled
222s Repeats are: unmasked
222s Mergefilter is at: 100
222s Random seed: 1710447483 (automatic)
222s Bitscore output: on
222s Leave status records: no
222s Join neighbors is: off
222s Target memory is: 1.24 GB
222s Retain members is: true
222s Store repeatmap? yes
222s Reverse complement data is generated on the fly
222s Rifts allowed: 0
222s Fuzzy Extension: yes
222s Score by minimum pair: yes
222s Gapped anchors: no
222s Large sequence support is: enabled => seqpos is 8 bytes
222s Murasaki version 1.68.6 (LARGESEQ)
222s Loading NZ_GG705071.fna
222s Read 48160bp (47.03 KBp) in 0.003 seconds (17.4 MBp/s)
222s Done with forward strand (49526bp). Preparing reverse complement...
222s  <-> Reversing metdata.
222s Done.
222s Seq NZ_GG705071.fna loaded. 48.37 KB
222s Loading NZ_GG705071.gbk
222s Read 48160bp (47.03 KBp) in 0.003 seconds (15.0 MBp/s)
222s Done with forward strand (49526bp). Preparing reverse complement...
222s  <-> Reversing metdata.
222s Done.
222s Seq NZ_GG705071.gbk loaded. 48.37 KB
222s Sequence loading took: 0.006 seconds
222s Forward frequencies:  A:33.2766%  C:16.8958%  G:18.0731%  T:31.7546%
222s Global base frequencies:  A/T:65.0311%  C/G:34.9689%
222s Pat: 3 bases long with weight 2
222s    1 101 
222s Computing hash parameters...
222s Using 4 hashbits
222s  0%......... (T -0.125 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 91%........
222s Acceptable hash function found after 1000 cycles.
222s Best uses 2/2 bases and has 0 empties from 2 inputs.
222s Score: 0.96875 (cf. worst: -4.51562)
222s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
222s Total correlation penalty: 0
222s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
222s                                             10
222s                                             ==
222s w[ 0]>>29:                                 -.C
222s w[ 0]>>30:                                  A.-
222s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
222s Ecolist (optimistic): Expcted entries per list: 14
222s Ecolist (optimistic): Minimum chunks per list: 3
222s Would take minimum 256.000000 bytes to make perfect hash.
222s Hashing 188.12 KB of sequence requires: 
222s  ~ linear (in seq length) hashing cost of 446.80 KB
222s  ~ linear (in seq length) expected anchor cost of 4.53 MB
222s Initial hash table uses: 256 bytes (4 bits, 16 entries)
222s Expected memory usage (without anchors): 447.05 KB
222s Expected memory usage (with anchors): 4.97 MB
222s Hash parameters computed in 0.134 seconds
222s Creating storage structures: 16 entries in 256 bytes space.
222s Storage structures created in: 0.000 seconds
222s 
222s Hashing NZ_GG705071.fna forwards
222s  0%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Hashing NZ_GG705071.fna backwards
222s  0%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Hashing NZ_GG705071.gbk forwards
222s  0%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Hashing NZ_GG705071.gbk backwards
222s  0%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 10%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 20%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 30%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 40%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 50%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 80%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:03 2024
222s 90%.........
222s Initial hashing took: 0.023 seconds
222s Extracting anchors from hash-space.
222s  (T -0.141 seconds) ETA: Thu Mar 14 20:18:04 2024
222s  6%. (T -0.211 seconds) ETA: Thu Mar 14 20:18:04 2024
222s 18%. (T -0.134 seconds) ETA: Thu Mar 14 20:18:04 2024
222s 31%. (T -0.105 seconds) ETA: Thu Mar 14 20:18:04 2024
222s 43%. (T -0.069 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 56%. (T -0.050 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 68%. (T -0.028 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 81%. (T -0.012 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 93%.
223s Anchor extraction completed in: 0.163 seconds
223s Total anchors: 0
223s Anchor extraction + merge time: 0.164 seconds
223s Total processing time: 0.327 seconds
223s Writing anchors...
223s Total seeds used in anchors: 16
223s Hash performance:
223s  Keys used: 16 out of 16 possible (100.00%).
223s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
223s  Average pigeons per pigeon hole: 1
223s Writing 16 repeats...Output writing finished in: 0.028 seconds
223s Total time: 0.355 seconds
223s Murasaki finished!
223s PASSED MURASAKI
223s 
223s Testing Genepare on NZ_GG705071.fna
223s 1001
223s PASSED GENEPARSE
223s 
223s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
223s Testing mbfa on NZ_GG705071.fna
223s PASSED mbfa
223s 
223s Test Murasaki on NZ_GG705072.fna
223s Verbosity level is: 0
223s Writing to: output/test
223s Pattern is: 101
223s Max usable hash bits: 27
223s Hit filter is: 0
223s Hash table type is: EcoHash
223s Hashing every: 1 base
223s Histogram detail is: 0
223s Hashing function is: 3
223s Collision profiling is: disabled
223s Repeats are: unmasked
223s Mergefilter is at: 100
223s Random seed: 1710447484 (automatic)
223s Bitscore output: on
223s Leave status records: no
223s Join neighbors is: off
223s Target memory is: 1.24 GB
223s Retain members is: true
223s Store repeatmap? yes
223s Reverse complement data is generated on the fly
223s Rifts allowed: 0
223s Fuzzy Extension: yes
223s Score by minimum pair: yes
223s Gapped anchors: no
223s Large sequence support is: enabled => seqpos is 8 bytes
223s Murasaki version 1.68.6 (LARGESEQ)
223s Loading NZ_GG705072.fna
223s Read 25963bp (25.35 KBp) in 0.002 seconds (14.7 MBp/s)
223s Done with forward strand (35758bp). Preparing reverse complement...
223s  <-> Reversing metdata.
223s Done.
223s Seq NZ_GG705072.fna loaded. 34.92 KB
223s Loading NZ_GG705072.gbk
223s Read 25963bp (25.35 KBp) in 0.002 seconds (11.1 MBp/s)
223s Done with forward strand (35758bp). Preparing reverse complement...
223s  <-> Reversing metdata.
223s Done.
223s Seq NZ_GG705072.gbk loaded. 34.92 KB
223s Sequence loading took: 0.004 seconds
223s Forward frequencies:  A:29.6422%  C:19.6742%  G:18.2259%  T:32.4577%
223s Global base frequencies:  A/T:62.0999%  C/G:37.9001%
223s Pat: 3 bases long with weight 2
223s    1 101 
223s Computing hash parameters...
223s Using 4 hashbits
223s  0%......... (T -0.118 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.105 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.091 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.068 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 91%........
223s Acceptable hash function found after 1000 cycles.
223s Best uses 2/2 bases and has 0 empties from 2 inputs.
223s Score: 0.96875 (cf. worst: -4.51562)
223s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
223s Total correlation penalty: 0
223s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
223s                                             10
223s                                             ==
223s w[ 0]>>29:                                 -.C
223s w[ 0]>>30:                                  A.-
223s Ecolist (optimistic): (seqbits: 2 idxbits: 17 minBlocks: 1 initblocks: 1)
223s Ecolist (optimistic): Expcted entries per list: 13
223s Ecolist (optimistic): Minimum chunks per list: 3
223s Would take minimum 256.000000 bytes to make perfect hash.
223s Hashing 101.42 KB of sequence requires: 
223s  ~ linear (in seq length) hashing cost of 240.86 KB
223s  ~ linear (in seq length) expected anchor cost of 3.27 MB
223s Initial hash table uses: 256 bytes (4 bits, 16 entries)
223s Expected memory usage (without anchors): 241.11 KB
223s Expected memory usage (with anchors): 3.51 MB
223s Hash parameters computed in 0.134 seconds
223s Creating storage structures: 16 entries in 256 bytes space.
223s Storage structures created in: 0.000 seconds
223s 
223s Hashing NZ_GG705072.fna forwards
223s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Hashing NZ_GG705072.fna backwards
223s  0%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Hashing NZ_GG705072.gbk forwards
223s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Hashing NZ_GG705072.gbk backwards
223s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Initial hashing took: 0.013 seconds
223s Extracting anchors from hash-space.
223s  (T -0.118 seconds) ETA: Thu Mar 14 20:18:04 2024
223s  6%. (T -0.075 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 18%. (T -0.067 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 31%. (T -0.046 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 43%. (T -0.034 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 56%. (T -0.023 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 68%. (T -0.015 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 81%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 93%.
223s Anchor extraction completed in: 0.082 seconds
223s Total anchors: 0
223s Anchor extraction + merge time: 0.082 seconds
223s Total processing time: 0.234 seconds
223s Writing anchors...
223s Total seeds used in anchors: 16
223s Hash performance:
223s  Keys used: 16 out of 16 possible (100.00%).
223s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
223s  Average pigeons per pigeon hole: 1
223s Writing 16 repeats...Output writing finished in: 0.017 seconds
223s Total time: 0.251 seconds
223s Murasaki finished!
223s PASSED MURASAKI
223s 
223s Testing Genepare on NZ_GG705072.fna
223s 1001
223s PASSED GENEPARSE
223s 
223s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
223s Testing mbfa on NZ_GG705072.fna
223s PASSED mbfa
223s 
223s Test Murasaki on NZ_GG705073.fna
223s Verbosity level is: 0
223s Writing to: output/test
223s Pattern is: 101
223s Max usable hash bits: 27
223s Hit filter is: 0
223s Hash table type is: EcoHash
223s Hashing every: 1 base
223s Histogram detail is: 0
223s Hashing function is: 3
223s Collision profiling is: disabled
223s Repeats are: unmasked
223s Mergefilter is at: 100
223s Random seed: 1710447484 (automatic)
223s Bitscore output: on
223s Leave status records: no
223s Join neighbors is: off
223s Target memory is: 1.24 GB
223s Retain members is: true
223s Store repeatmap? yes
223s Reverse complement data is generated on the fly
223s Rifts allowed: 0
223s Fuzzy Extension: yes
223s Score by minimum pair: yes
223s Gapped anchors: no
223s Large sequence support is: enabled => seqpos is 8 bytes
223s Murasaki version 1.68.6 (LARGESEQ)
223s Loading NZ_GG705073.fna
223s Read 29370bp (28.68 KBp) in 0.002 seconds (17.4 MBp/s)
223s Done with forward strand (32703bp). Preparing reverse complement...
223s  <-> Reversing metdata.
223s Done.
223s Seq NZ_GG705073.fna loaded. 31.94 KB
223s Loading NZ_GG705073.gbk
223s Read 29370bp (28.68 KBp) in 0.002 seconds (12.9 MBp/s)
223s Done with forward strand (32703bp). Preparing reverse complement...
223s  <-> Reversing metdata.
223s Done.
223s Seq NZ_GG705073.gbk loaded. 31.94 KB
223s Sequence loading took: 0.004 seconds
223s Forward frequencies:  A:31.0964%  C:18.2635%  G:17.6166%  T:33.0235%
223s Global base frequencies:  A/T:64.1199%  C/G:35.8801%
223s Pat: 3 bases long with weight 2
223s    1 101 
223s Computing hash parameters...
223s Using 4 hashbits
223s  0%......... (T -0.118 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.105 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.091 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.052 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 91%........
223s Acceptable hash function found after 1000 cycles.
223s Best uses 2/2 bases and has 0 empties from 2 inputs.
223s Score: 0.96875 (cf. worst: -4.51562)
223s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
223s Total correlation penalty: 0
223s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
223s                                             10
223s                                             ==
223s w[ 0]>>29:                                 -.C
223s w[ 0]>>30:                                  A.-
223s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1)
223s Ecolist (optimistic): Expcted entries per list: 13
223s Ecolist (optimistic): Minimum chunks per list: 3
223s Would take minimum 256.000000 bytes to make perfect hash.
223s Hashing 114.73 KB of sequence requires: 
223s  ~ linear (in seq length) hashing cost of 258.13 KB
223s  ~ linear (in seq length) expected anchor cost of 2.99 MB
223s Initial hash table uses: 256 bytes (4 bits, 16 entries)
223s Expected memory usage (without anchors): 258.38 KB
223s Expected memory usage (with anchors): 3.25 MB
223s Hash parameters computed in 0.133 seconds
223s Creating storage structures: 16 entries in 256 bytes space.
223s Storage structures created in: 0.000 seconds
223s 
223s Hashing NZ_GG705073.fna forwards
223s  0%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Hashing NZ_GG705073.fna backwards
223s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Hashing NZ_GG705073.gbk forwards
223s  0%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Hashing NZ_GG705073.gbk backwards
223s  0%......... (T -0.009 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Initial hashing took: 0.013 seconds
223s Extracting anchors from hash-space.
223s  (T -0.156 seconds) ETA: Thu Mar 14 20:18:04 2024
223s  6%. (T -0.090 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 18%. (T -0.078 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 31%. (T -0.053 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 43%. (T -0.040 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 56%. (T -0.027 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 68%. (T -0.017 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 81%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 93%.
223s Anchor extraction completed in: 0.093 seconds
223s Total anchors: 0
223s Anchor extraction + merge time: 0.093 seconds
223s Total processing time: 0.244 seconds
223s Writing anchors...
223s Total seeds used in anchors: 16
223s Hash performance:
223s  Keys used: 16 out of 16 possible (100.00%).
223s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
223s  Average pigeons per pigeon hole: 1
223s Writing 16 repeats...Output writing finished in: 0.017 seconds
223s Total time: 0.261 seconds
223s Murasaki finished!
223s PASSED MURASAKI
223s 
223s Testing Genepare on NZ_GG705073.fna
223s 1001
223s PASSED GENEPARSE
223s 
223s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
223s Testing mbfa on NZ_GG705073.fna
223s PASSED mbfa
223s 
223s Test Murasaki on NZ_GG705074.fna
223s Verbosity level is: 0
223s Writing to: output/test
223s Pattern is: 101
223s Max usable hash bits: 27
223s Hit filter is: 0
223s Hash table type is: EcoHash
223s Hashing every: 1 base
223s Histogram detail is: 0
223s Hashing function is: 3
223s Collision profiling is: disabled
223s Repeats are: unmasked
223s Mergefilter is at: 100
223s Random seed: 1710447484 (automatic)
223s Bitscore output: on
223s Leave status records: no
223s Join neighbors is: off
223s Target memory is: 1.24 GB
223s Retain members is: true
223s Store repeatmap? yes
223s Reverse complement data is generated on the fly
223s Rifts allowed: 0
223s Fuzzy Extension: yes
223s Score by minimum pair: yes
223s Gapped anchors: no
223s Large sequence support is: enabled => seqpos is 8 bytes
223s Murasaki version 1.68.6 (LARGESEQ)
223s Loading NZ_GG705074.fna
223s Read 27463bp (26.82 KBp) in 0.001 seconds (18.4 MBp/s)
223s Done with forward strand (27739bp). Preparing reverse complement...
223s  <-> Reversing metdata.
223s Done.
223s Seq NZ_GG705074.fna loaded. 27.09 KB
223s Loading NZ_GG705074.gbk
223s Read 27463bp (26.82 KBp) in 0.002 seconds (12.6 MBp/s)
223s Done with forward strand (27739bp). Preparing reverse complement...
223s  <-> Reversing metdata.
223s Done.
223s Seq NZ_GG705074.gbk loaded. 27.09 KB
223s Sequence loading took: 0.004 seconds
223s Forward frequencies:  A:29.7418%  C:22.6122%  G:19.164%  T:28.482%
223s Global base frequencies:  A/T:58.2238%  C/G:41.7762%
223s Pat: 3 bases long with weight 2
223s    1 101 
223s Computing hash parameters...
223s Using 4 hashbits
223s  0%......... (T -0.119 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.105 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.092 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.065 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.052 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 91%........
223s Acceptable hash function found after 1000 cycles.
223s Best uses 2/2 bases and has 0 empties from 2 inputs.
223s Score: 0.96875 (cf. worst: -4.51562)
223s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
223s Total correlation penalty: 0
223s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
223s                                             10
223s                                             ==
223s w[ 0]>>29:                                 -.C
223s w[ 0]>>30:                                  A.-
223s Ecolist (optimistic): (seqbits: 2 idxbits: 16 minBlocks: 1 initblocks: 1)
223s Ecolist (optimistic): Expcted entries per list: 13
223s Ecolist (optimistic): Minimum chunks per list: 3
223s Would take minimum 256.000000 bytes to make perfect hash.
223s Hashing 107.28 KB of sequence requires: 
223s  ~ linear (in seq length) hashing cost of 241.37 KB
223s  ~ linear (in seq length) expected anchor cost of 2.54 MB
223s Initial hash table uses: 256 bytes (4 bits, 16 entries)
223s Expected memory usage (without anchors): 241.62 KB
223s Expected memory usage (with anchors): 2.78 MB
223s Hash parameters computed in 0.133 seconds
223s Creating storage structures: 16 entries in 256 bytes space.
223s Storage structures created in: 0.000 seconds
223s 
223s Hashing NZ_GG705074.fna forwards
223s  0%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Hashing NZ_GG705074.fna backwards
223s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Hashing NZ_GG705074.gbk forwards
223s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Hashing NZ_GG705074.gbk backwards
223s  0%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 20%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 90%.........
223s Initial hashing took: 0.015 seconds
223s Extracting anchors from hash-space.
223s  (T -0.126 seconds) ETA: Thu Mar 14 20:18:04 2024
223s  6%. (T -0.083 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 18%. (T -0.070 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 31%. (T -0.051 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 43%. (T -0.038 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 56%. (T -0.026 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 68%. (T -0.016 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 81%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:04 2024
223s 93%.
223s Anchor extraction completed in: 0.085 seconds
223s Total anchors: 0
223s Anchor extraction + merge time: 0.085 seconds
223s Total processing time: 0.238 seconds
223s Writing anchors...
223s Total seeds used in anchors: 16
223s Hash performance:
223s  Keys used: 16 out of 16 possible (100.00%).
223s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
223s  Average pigeons per pigeon hole: 1
223s Writing 16 repeats...Output writing finished in: 0.017 seconds
223s Total time: 0.254 seconds
223s Murasaki finished!
223s PASSED MURASAKI
223s 
223s Testing Genepare on NZ_GG705074.fna
223s 1001
223s PASSED GENEPARSE
223s 
224s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
224s Testing mbfa on NZ_GG705074.fna
224s PASSED mbfa
224s 
224s Test Murasaki on NZ_GG705075.fna
224s Verbosity level is: 0
224s Writing to: output/test
224s Pattern is: 101
224s Max usable hash bits: 27
224s Hit filter is: 0
224s Hash table type is: EcoHash
224s Hashing every: 1 base
224s Histogram detail is: 0
224s Hashing function is: 3
224s Collision profiling is: disabled
224s Repeats are: unmasked
224s Mergefilter is at: 100
224s Random seed: 1710447484 (automatic)
224s Bitscore output: on
224s Leave status records: no
224s Join neighbors is: off
224s Target memory is: 1.24 GB
224s Retain members is: true
224s Store repeatmap? yes
224s Reverse complement data is generated on the fly
224s Rifts allowed: 0
224s Fuzzy Extension: yes
224s Score by minimum pair: yes
224s Gapped anchors: no
224s Large sequence support is: enabled => seqpos is 8 bytes
224s Murasaki version 1.68.6 (LARGESEQ)
224s Loading NZ_GG705075.fna
224s Read 10982bp (10.72 KBp) in 0.001 seconds (13.2 MBp/s)
224s Done with forward strand (12466bp). Preparing reverse complement...
224s  <-> Reversing metdata.
224s Done.
224s Seq NZ_GG705075.fna loaded. 12.17 KB
224s Loading NZ_GG705075.gbk
224s Read 10982bp (10.72 KBp) in 0.001 seconds (9.6 MBp/s)
224s Done with forward strand (12466bp). Preparing reverse complement...
224s  <-> Reversing metdata.
224s Done.
224s Seq NZ_GG705075.gbk loaded. 12.17 KB
224s Sequence loading took: 0.002 seconds
224s Forward frequencies:  A:32.1526%  C:18.9765%  G:18.4484%  T:30.4225%
224s Global base frequencies:  A/T:62.5751%  C/G:37.4249%
224s Pat: 3 bases long with weight 2
224s    1 101 
224s Computing hash parameters...
224s Using 4 hashbits
224s  0%......... (T -0.117 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.104 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.091 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.078 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.065 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.055 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 91%........
224s Acceptable hash function found after 1000 cycles.
224s Best uses 2/2 bases and has 0 empties from 2 inputs.
224s Score: 0.96875 (cf. worst: -4.51562)
224s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
224s Total correlation penalty: 0
224s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
224s                                             10
224s                                             ==
224s w[ 0]>>29:                                 -.C
224s w[ 0]>>30:                                  A.-
224s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
224s Ecolist (optimistic): Expcted entries per list: 12
224s Ecolist (optimistic): Minimum chunks per list: 3
224s Would take minimum 256.000000 bytes to make perfect hash.
224s Hashing 42.90 KB of sequence requires: 
224s  ~ linear (in seq length) hashing cost of 91.16 KB
224s  ~ linear (in seq length) expected anchor cost of 1.14 MB
224s Initial hash table uses: 256 bytes (4 bits, 16 entries)
224s Expected memory usage (without anchors): 91.41 KB
224s Expected memory usage (with anchors): 1.23 MB
224s Hash parameters computed in 0.135 seconds
224s Creating storage structures: 16 entries in 256 bytes space.
224s Storage structures created in: 0.000 seconds
224s 
224s Hashing NZ_GG705075.fna forwards
224s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705075.fna backwards
224s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705075.gbk forwards
224s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705075.gbk backwards
224s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Initial hashing took: 0.007 seconds
224s Extracting anchors from hash-space.
224s  (T -0.056 seconds) ETA: Thu Mar 14 20:18:05 2024
224s  6%. (T -0.032 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 18%. (T -0.028 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 31%. (T -0.020 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 43%. (T -0.014 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 56%. (T -0.010 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 68%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 81%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 93%.
224s Anchor extraction completed in: 0.033 seconds
224s Total anchors: 0
224s Anchor extraction + merge time: 0.033 seconds
224s Total processing time: 0.178 seconds
224s Writing anchors...
224s Total seeds used in anchors: 16
224s Hash performance:
224s  Keys used: 16 out of 16 possible (100.00%).
224s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
224s  Average pigeons per pigeon hole: 1
224s Writing 16 repeats...Output writing finished in: 0.008 seconds
224s Total time: 0.186 seconds
224s Murasaki finished!
224s PASSED MURASAKI
224s 
224s Testing Genepare on NZ_GG705075.fna
224s 1001
224s PASSED GENEPARSE
224s 
224s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
224s Testing mbfa on NZ_GG705075.fna
224s PASSED mbfa
224s 
224s Test Murasaki on NZ_GG705076.fna
224s Verbosity level is: 0
224s Writing to: output/test
224s Pattern is: 101
224s Max usable hash bits: 27
224s Hit filter is: 0
224s Hash table type is: EcoHash
224s Hashing every: 1 base
224s Histogram detail is: 0
224s Hashing function is: 3
224s Collision profiling is: disabled
224s Repeats are: unmasked
224s Mergefilter is at: 100
224s Random seed: 1710447485 (automatic)
224s Bitscore output: on
224s Leave status records: no
224s Join neighbors is: off
224s Target memory is: 1.24 GB
224s Retain members is: true
224s Store repeatmap? yes
224s Reverse complement data is generated on the fly
224s Rifts allowed: 0
224s Fuzzy Extension: yes
224s Score by minimum pair: yes
224s Gapped anchors: no
224s Large sequence support is: enabled => seqpos is 8 bytes
224s Murasaki version 1.68.6 (LARGESEQ)
224s Loading NZ_GG705076.fna
224s Read 9733bp (9.50 KBp) in 0.001 seconds (14.0 MBp/s)
224s Done with forward strand (9753bp). Preparing reverse complement...
224s  <-> Reversing metdata.
224s Done.
224s Seq NZ_GG705076.fna loaded. 9.52 KB
224s Loading NZ_GG705076.gbk
224s Read 9733bp (9.50 KBp) in 0.001 seconds (12.0 MBp/s)
224s Done with forward strand (9753bp). Preparing reverse complement...
224s  <-> Reversing metdata.
224s Done.
224s Seq NZ_GG705076.gbk loaded. 9.52 KB
224s Sequence loading took: 0.001 seconds
224s Forward frequencies:  A:30.114%  C:17.3122%  G:17.2917%  T:35.282%
224s Global base frequencies:  A/T:65.3961%  C/G:34.6039%
224s Pat: 3 bases long with weight 2
224s    1 101 
224s Computing hash parameters...
224s Using 4 hashbits
224s  0%......... (T -0.122 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.068 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 91%........
224s Acceptable hash function found after 1000 cycles.
224s Best uses 2/2 bases and has 0 empties from 2 inputs.
224s Score: 0.96875 (cf. worst: -4.51562)
224s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
224s Total correlation penalty: 0
224s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
224s                                             10
224s                                             ==
224s w[ 0]>>29:                                 -.C
224s w[ 0]>>30:                                  A.-
224s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
224s Ecolist (optimistic): Expcted entries per list: 12
224s Ecolist (optimistic): Minimum chunks per list: 3
224s Would take minimum 256.000000 bytes to make perfect hash.
224s Hashing 38.02 KB of sequence requires: 
224s  ~ linear (in seq length) hashing cost of 80.78 KB
224s  ~ linear (in seq length) expected anchor cost of 914.34 KB
224s Initial hash table uses: 256 bytes (4 bits, 16 entries)
224s Expected memory usage (without anchors): 81.03 KB
224s Expected memory usage (with anchors): 995.38 KB
224s Hash parameters computed in 0.136 seconds
224s Creating storage structures: 16 entries in 256 bytes space.
224s Storage structures created in: 0.000 seconds
224s 
224s Hashing NZ_GG705076.fna forwards
224s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705076.fna backwards
224s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705076.gbk forwards
224s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705076.gbk backwards
224s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Initial hashing took: 0.008 seconds
224s Extracting anchors from hash-space.
224s  (T -0.025 seconds) ETA: Thu Mar 14 20:18:05 2024
224s  6%. (T -0.015 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 18%. (T -0.018 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 31%. (T -0.014 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 43%. (T -0.013 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 56%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 68%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 81%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 93%.
224s Anchor extraction completed in: 0.029 seconds
224s Total anchors: 0
224s Anchor extraction + merge time: 0.029 seconds
224s Total processing time: 0.175 seconds
224s Writing anchors...
224s Total seeds used in anchors: 16
224s Hash performance:
224s  Keys used: 16 out of 16 possible (100.00%).
224s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
224s  Average pigeons per pigeon hole: 1
224s Writing 16 repeats...Output writing finished in: 0.007 seconds
224s Total time: 0.182 seconds
224s Murasaki finished!
224s PASSED MURASAKI
224s 
224s Testing Genepare on NZ_GG705076.fna
224s 1001
224s PASSED GENEPARSE
224s 
224s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
224s Testing mbfa on NZ_GG705076.fna
224s PASSED mbfa
224s 
224s Test Murasaki on NZ_GG705077.fna
224s Verbosity level is: 0
224s Writing to: output/test
224s Pattern is: 101
224s Max usable hash bits: 27
224s Hit filter is: 0
224s Hash table type is: EcoHash
224s Hashing every: 1 base
224s Histogram detail is: 0
224s Hashing function is: 3
224s Collision profiling is: disabled
224s Repeats are: unmasked
224s Mergefilter is at: 100
224s Random seed: 1710447485 (automatic)
224s Bitscore output: on
224s Leave status records: no
224s Join neighbors is: off
224s Target memory is: 1.24 GB
224s Retain members is: true
224s Store repeatmap? yes
224s Reverse complement data is generated on the fly
224s Rifts allowed: 0
224s Fuzzy Extension: yes
224s Score by minimum pair: yes
224s Gapped anchors: no
224s Large sequence support is: enabled => seqpos is 8 bytes
224s Murasaki version 1.68.6 (LARGESEQ)
224s Loading NZ_GG705077.fna
224s Read 9579bp (9.35 KBp) in 0.001 seconds (13.1 MBp/s)
224s Done with forward strand (9752bp). Preparing reverse complement...
224s  <-> Reversing metdata.
224s Done.
224s Seq NZ_GG705077.fna loaded. 9.52 KB
224s Loading NZ_GG705077.gbk
224s Read 9579bp (9.35 KBp) in 0.001 seconds (12.5 MBp/s)
224s Done with forward strand (9752bp). Preparing reverse complement...
224s  <-> Reversing metdata.
224s Done.
224s Seq NZ_GG705077.gbk loaded. 9.52 KB
224s Sequence loading took: 0.001 seconds
224s Forward frequencies:  A:31.0366%  C:19.2713%  G:18.2169%  T:31.4751%
224s Global base frequencies:  A/T:62.5117%  C/G:37.4883%
224s Pat: 3 bases long with weight 2
224s    1 101 
224s Computing hash parameters...
224s Using 4 hashbits
224s  0%......... (T -0.122 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 91%........
224s Acceptable hash function found after 1000 cycles.
224s Best uses 2/2 bases and has 0 empties from 2 inputs.
224s Score: 0.96875 (cf. worst: -4.51562)
224s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
224s Total correlation penalty: 0
224s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
224s                                             10
224s                                             ==
224s w[ 0]>>29:                                 -.C
224s w[ 0]>>30:                                  A.-
224s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
224s Ecolist (optimistic): Expcted entries per list: 12
224s Ecolist (optimistic): Minimum chunks per list: 3
224s Would take minimum 256.000000 bytes to make perfect hash.
224s Hashing 37.42 KB of sequence requires: 
224s  ~ linear (in seq length) hashing cost of 79.50 KB
224s  ~ linear (in seq length) expected anchor cost of 914.25 KB
224s Initial hash table uses: 256 bytes (4 bits, 16 entries)
224s Expected memory usage (without anchors): 79.75 KB
224s Expected memory usage (with anchors): 994.00 KB
224s Hash parameters computed in 0.134 seconds
224s Creating storage structures: 16 entries in 256 bytes space.
224s Storage structures created in: 0.000 seconds
224s 
224s Hashing NZ_GG705077.fna forwards
224s  0%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705077.fna backwards
224s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705077.gbk forwards
224s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705077.gbk backwards
224s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Initial hashing took: 0.007 seconds
224s Extracting anchors from hash-space.
224s  (T -0.026 seconds) ETA: Thu Mar 14 20:18:05 2024
224s  6%. (T -0.016 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 18%. (T -0.018 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 31%. (T -0.015 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 43%. (T -0.013 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 56%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 68%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 81%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 93%.
224s Anchor extraction completed in: 0.028 seconds
224s Total anchors: 0
224s Anchor extraction + merge time: 0.028 seconds
224s Total processing time: 0.171 seconds
224s Writing anchors...
224s Total seeds used in anchors: 16
224s Hash performance:
224s  Keys used: 16 out of 16 possible (100.00%).
224s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
224s  Average pigeons per pigeon hole: 1
224s Writing 16 repeats...Output writing finished in: 0.006 seconds
224s Total time: 0.177 seconds
224s Murasaki finished!
224s PASSED MURASAKI
224s 
224s Testing Genepare on NZ_GG705077.fna
224s 1001
224s PASSED GENEPARSE
224s 
224s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
224s Testing mbfa on NZ_GG705077.fna
224s PASSED mbfa
224s 
224s Test Murasaki on NZ_GG705078.fna
224s Verbosity level is: 0
224s Writing to: output/test
224s Pattern is: 101
224s Max usable hash bits: 27
224s Hit filter is: 0
224s Hash table type is: EcoHash
224s Hashing every: 1 base
224s Histogram detail is: 0
224s Hashing function is: 3
224s Collision profiling is: disabled
224s Repeats are: unmasked
224s Mergefilter is at: 100
224s Random seed: 1710447485 (automatic)
224s Bitscore output: on
224s Leave status records: no
224s Join neighbors is: off
224s Target memory is: 1.24 GB
224s Retain members is: true
224s Store repeatmap? yes
224s Reverse complement data is generated on the fly
224s Rifts allowed: 0
224s Fuzzy Extension: yes
224s Score by minimum pair: yes
224s Gapped anchors: no
224s Large sequence support is: enabled => seqpos is 8 bytes
224s Murasaki version 1.68.6 (LARGESEQ)
224s Loading NZ_GG705078.fna
224s Read 9549bp (9.33 KBp) in 0.001 seconds (13.5 MBp/s)
224s Done with forward strand (9578bp). Preparing reverse complement...
224s  <-> Reversing metdata.
224s Done.
224s Seq NZ_GG705078.fna loaded. 9.35 KB
224s Loading NZ_GG705078.gbk
224s Read 9549bp (9.33 KBp) in 0.001 seconds (12.6 MBp/s)
224s Done with forward strand (9578bp). Preparing reverse complement...
224s  <-> Reversing metdata.
224s Done.
224s Seq NZ_GG705078.gbk loaded. 9.35 KB
224s Sequence loading took: 0.001 seconds
224s Forward frequencies:  A:29.6366%  C:18.8816%  G:17.583%  T:33.8988%
224s Global base frequencies:  A/T:63.5354%  C/G:36.4646%
224s Pat: 3 bases long with weight 2
224s    1 101 
224s Computing hash parameters...
224s Using 4 hashbits
224s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 91%........
224s Acceptable hash function found after 1000 cycles.
224s Best uses 2/2 bases and has 0 empties from 2 inputs.
224s Score: 0.96875 (cf. worst: -4.51562)
224s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
224s Total correlation penalty: 0
224s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
224s                                             10
224s                                             ==
224s w[ 0]>>29:                                 -.C
224s w[ 0]>>30:                                  A.-
224s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
224s Ecolist (optimistic): Expcted entries per list: 12
224s Ecolist (optimistic): Minimum chunks per list: 3
224s Would take minimum 256.000000 bytes to make perfect hash.
224s Hashing 37.30 KB of sequence requires: 
224s  ~ linear (in seq length) hashing cost of 79.26 KB
224s  ~ linear (in seq length) expected anchor cost of 897.94 KB
224s Initial hash table uses: 256 bytes (4 bits, 16 entries)
224s Expected memory usage (without anchors): 79.51 KB
224s Expected memory usage (with anchors): 977.44 KB
224s Hash parameters computed in 0.133 seconds
224s Creating storage structures: 16 entries in 256 bytes space.
224s Storage structures created in: 0.000 seconds
224s 
224s Hashing NZ_GG705078.fna forwards
224s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705078.fna backwards
224s  0%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705078.gbk forwards
224s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Hashing NZ_GG705078.gbk backwards
224s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 90%.........
224s Initial hashing took: 0.008 seconds
224s Extracting anchors from hash-space.
224s  (T -0.024 seconds) ETA: Thu Mar 14 20:18:05 2024
224s  6%. (T -0.015 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 18%. (T -0.017 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 31%. (T -0.014 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 43%. (T -0.012 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 56%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 68%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 81%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:05 2024
224s 93%.
224s Anchor extraction completed in: 0.027 seconds
224s Total anchors: 0
224s Anchor extraction + merge time: 0.028 seconds
224s Total processing time: 0.171 seconds
224s Writing anchors...
224s Total seeds used in anchors: 16
224s Hash performance:
224s  Keys used: 16 out of 16 possible (100.00%).
224s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
224s  Average pigeons per pigeon hole: 1
224s Writing 16 repeats...Output writing finished in: 0.007 seconds
224s Total time: 0.178 seconds
224s Murasaki finished!
224s PASSED MURASAKI
224s 
224s Testing Genepare on NZ_GG705078.fna
224s 1001
224s PASSED GENEPARSE
224s 
224s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
224s Testing mbfa on NZ_GG705078.fna
224s PASSED mbfa
224s 
224s Test Murasaki on NZ_GG705079.fna
224s Verbosity level is: 0
224s Writing to: output/test
224s Pattern is: 101
224s Max usable hash bits: 27
224s Hit filter is: 0
224s Hash table type is: EcoHash
224s Hashing every: 1 base
224s Histogram detail is: 0
224s Hashing function is: 3
224s Collision profiling is: disabled
224s Repeats are: unmasked
224s Mergefilter is at: 100
224s Random seed: 1710447485 (automatic)
224s Bitscore output: on
224s Leave status records: no
224s Join neighbors is: off
224s Target memory is: 1.24 GB
224s Retain members is: true
224s Store repeatmap? yes
224s Reverse complement data is generated on the fly
224s Rifts allowed: 0
224s Fuzzy Extension: yes
224s Score by minimum pair: yes
224s Gapped anchors: no
224s Large sequence support is: enabled => seqpos is 8 bytes
224s Murasaki version 1.68.6 (LARGESEQ)
224s Loading NZ_GG705079.fna
224s Read 7815bp (7.63 KBp) in 0.001 seconds (11.9 MBp/s)
224s Done with forward strand (9392bp). Preparing reverse complement...
224s  <-> Reversing metdata.
224s Done.
224s Seq NZ_GG705079.fna loaded. 9.17 KB
224s Loading NZ_GG705079.gbk
224s Read 7815bp (7.63 KBp) in 0.001 seconds (10.0 MBp/s)
224s Done with forward strand (9392bp). Preparing reverse complement...
224s  <-> Reversing metdata.
224s Done.
224s Seq NZ_GG705079.gbk loaded. 9.17 KB
224s Sequence loading took: 0.001 seconds
224s Forward frequencies:  A:32.1433%  C:19.1555%  G:17.3512%  T:31.35%
224s Global base frequencies:  A/T:63.4933%  C/G:36.5067%
224s Pat: 3 bases long with weight 2
224s    1 101 
224s Computing hash parameters...
224s Using 4 hashbits
224s  0%......... (T -0.123 seconds) ETA: Thu Mar 14 20:18:06 2024
224s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:06 2024
224s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:06 2024
224s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 91%........
225s Acceptable hash function found after 1000 cycles.
225s Best uses 2/2 bases and has 0 empties from 2 inputs.
225s Score: 0.96875 (cf. worst: -4.51562)
225s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
225s Total correlation penalty: 0
225s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
225s                                             10
225s                                             ==
225s w[ 0]>>29:                                 -.C
225s w[ 0]>>30:                                  A.-
225s Ecolist (optimistic): (seqbits: 2 idxbits: 15 minBlocks: 1 initblocks: 1)
225s Ecolist (optimistic): Expcted entries per list: 11
225s Ecolist (optimistic): Minimum chunks per list: 3
225s Would take minimum 256.000000 bytes to make perfect hash.
225s Hashing 30.53 KB of sequence requires: 
225s  ~ linear (in seq length) hashing cost of 64.86 KB
225s  ~ linear (in seq length) expected anchor cost of 880.50 KB
225s Initial hash table uses: 256 bytes (4 bits, 16 entries)
225s Expected memory usage (without anchors): 65.11 KB
225s Expected memory usage (with anchors): 945.61 KB
225s Hash parameters computed in 0.133 seconds
225s Creating storage structures: 16 entries in 256 bytes space.
225s Storage structures created in: 0.000 seconds
225s 
225s Hashing NZ_GG705079.fna forwards
225s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705079.fna backwards
225s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705079.gbk forwards
225s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705079.gbk backwards
225s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Initial hashing took: 0.006 seconds
225s Extracting anchors from hash-space.
225s  (T -0.019 seconds) ETA: Thu Mar 14 20:18:06 2024
225s  6%. (T -0.011 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 18%. (T -0.013 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 31%. (T -0.011 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 43%. (T -0.010 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 56%. (T -0.007 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 68%. (T -0.004 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 81%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 93%.
225s Anchor extraction completed in: 0.021 seconds
225s Total anchors: 0
225s Anchor extraction + merge time: 0.021 seconds
225s Total processing time: 0.163 seconds
225s Writing anchors...
225s Total seeds used in anchors: 16
225s Hash performance:
225s  Keys used: 16 out of 16 possible (100.00%).
225s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
225s  Average pigeons per pigeon hole: 1
225s Writing 16 repeats...Output writing finished in: 0.006 seconds
225s Total time: 0.168 seconds
225s Murasaki finished!
225s PASSED MURASAKI
225s 
225s Testing Genepare on NZ_GG705079.fna
225s 1001
225s PASSED GENEPARSE
225s 
225s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
225s Testing mbfa on NZ_GG705079.fna
225s PASSED mbfa
225s 
225s Test Murasaki on NZ_GG705080.fna
225s Verbosity level is: 0
225s Writing to: output/test
225s Pattern is: 101
225s Max usable hash bits: 27
225s Hit filter is: 0
225s Hash table type is: EcoHash
225s Hashing every: 1 base
225s Histogram detail is: 0
225s Hashing function is: 3
225s Collision profiling is: disabled
225s Repeats are: unmasked
225s Mergefilter is at: 100
225s Random seed: 1710447486 (automatic)
225s Bitscore output: on
225s Leave status records: no
225s Join neighbors is: off
225s Target memory is: 1.24 GB
225s Retain members is: true
225s Store repeatmap? yes
225s Reverse complement data is generated on the fly
225s Rifts allowed: 0
225s Fuzzy Extension: yes
225s Score by minimum pair: yes
225s Gapped anchors: no
225s Large sequence support is: enabled => seqpos is 8 bytes
225s Murasaki version 1.68.6 (LARGESEQ)
225s Loading NZ_GG705080.fna
225s Read 6711bp (6.55 KBp) in 0.000 seconds (12.8 MBp/s)
225s Done with forward strand (6711bp). Preparing reverse complement...
225s  <-> Reversing metdata.
225s Done.
225s Seq NZ_GG705080.fna loaded. 6.55 KB
225s Loading NZ_GG705080.gbk
225s Read 6711bp (6.55 KBp) in 0.001 seconds (11.2 MBp/s)
225s Done with forward strand (6711bp). Preparing reverse complement...
225s  <-> Reversing metdata.
225s Done.
225s Seq NZ_GG705080.gbk loaded. 6.55 KB
225s Sequence loading took: 0.001 seconds
225s Forward frequencies:  A:28.3415%  C:19.4308%  G:19.5202%  T:32.7075%
225s Global base frequencies:  A/T:61.049%  C/G:38.951%
225s Pat: 3 bases long with weight 2
225s    1 101 
225s Computing hash parameters...
225s Using 4 hashbits
225s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.106 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.092 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.078 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.065 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.052 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 91%........
225s Acceptable hash function found after 1000 cycles.
225s Best uses 2/2 bases and has 0 empties from 2 inputs.
225s Score: 0.96875 (cf. worst: -4.51562)
225s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
225s Total correlation penalty: 0
225s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
225s                                             10
225s                                             ==
225s w[ 0]>>29:                                 -.C
225s w[ 0]>>30:                                  A.-
225s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
225s Ecolist (optimistic): Expcted entries per list: 11
225s Ecolist (optimistic): Minimum chunks per list: 4
225s Would take minimum 256.000000 bytes to make perfect hash.
225s Hashing 26.21 KB of sequence requires: 
225s  ~ linear (in seq length) hashing cost of 52.42 KB
225s  ~ linear (in seq length) expected anchor cost of 629.16 KB
225s Initial hash table uses: 256 bytes (4 bits, 16 entries)
225s Expected memory usage (without anchors): 52.67 KB
225s Expected memory usage (with anchors): 681.83 KB
225s Hash parameters computed in 0.133 seconds
225s Creating storage structures: 16 entries in 256 bytes space.
225s Storage structures created in: 0.000 seconds
225s 
225s Hashing NZ_GG705080.fna forwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705080.fna backwards
225s  0%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705080.gbk forwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705080.gbk backwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Initial hashing took: 0.006 seconds
225s Extracting anchors from hash-space.
225s  (T -0.016 seconds) ETA: Thu Mar 14 20:18:06 2024
225s  6%. (T -0.010 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 18%. (T -0.011 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 31%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 43%. (T -0.008 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 56%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 68%. (T -0.004 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 81%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 93%.
225s Anchor extraction completed in: 0.018 seconds
225s Total anchors: 0
225s Anchor extraction + merge time: 0.019 seconds
225s Total processing time: 0.158 seconds
225s Writing anchors...
225s Total seeds used in anchors: 16
225s Hash performance:
225s  Keys used: 16 out of 16 possible (100.00%).
225s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
225s  Average pigeons per pigeon hole: 1
225s Writing 16 repeats...Output writing finished in: 0.005 seconds
225s Total time: 0.163 seconds
225s Murasaki finished!
225s PASSED MURASAKI
225s 
225s Testing Genepare on NZ_GG705080.fna
225s 1001
225s PASSED GENEPARSE
225s 
225s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
225s Testing mbfa on NZ_GG705080.fna
225s PASSED mbfa
225s 
225s Test Murasaki on NZ_GG705081.fna
225s Verbosity level is: 0
225s Writing to: output/test
225s Pattern is: 101
225s Max usable hash bits: 27
225s Hit filter is: 0
225s Hash table type is: EcoHash
225s Hashing every: 1 base
225s Histogram detail is: 0
225s Hashing function is: 3
225s Collision profiling is: disabled
225s Repeats are: unmasked
225s Mergefilter is at: 100
225s Random seed: 1710447486 (automatic)
225s Bitscore output: on
225s Leave status records: no
225s Join neighbors is: off
225s Target memory is: 1.24 GB
225s Retain members is: true
225s Store repeatmap? yes
225s Reverse complement data is generated on the fly
225s Rifts allowed: 0
225s Fuzzy Extension: yes
225s Score by minimum pair: yes
225s Gapped anchors: no
225s Large sequence support is: enabled => seqpos is 8 bytes
225s Murasaki version 1.68.6 (LARGESEQ)
225s Loading NZ_GG705081.fna
225s Read 6691bp (6.53 KBp) in 0.001 seconds (10.8 MBp/s)
225s Done with forward strand (6691bp). Preparing reverse complement...
225s  <-> Reversing metdata.
225s Done.
225s Seq NZ_GG705081.fna loaded. 6.53 KB
225s Loading NZ_GG705081.gbk
225s Read 6691bp (6.53 KBp) in 0.001 seconds (11.1 MBp/s)
225s Done with forward strand (6691bp). Preparing reverse complement...
225s  <-> Reversing metdata.
225s Done.
225s Seq NZ_GG705081.gbk loaded. 6.53 KB
225s Sequence loading took: 0.001 seconds
225s Forward frequencies:  A:31.1314%  C:16.8286%  G:17.6057%  T:34.4343%
225s Global base frequencies:  A/T:65.5657%  C/G:34.4343%
225s Pat: 3 bases long with weight 2
225s    1 101 
225s Computing hash parameters...
225s Using 4 hashbits
225s  0%......... (T -0.122 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 91%........
225s Acceptable hash function found after 1000 cycles.
225s Best uses 2/2 bases and has 0 empties from 2 inputs.
225s Score: 0.96875 (cf. worst: -4.51562)
225s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
225s Total correlation penalty: 0
225s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
225s                                             10
225s                                             ==
225s w[ 0]>>29:                                 -.C
225s w[ 0]>>30:                                  A.-
225s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
225s Ecolist (optimistic): Expcted entries per list: 11
225s Ecolist (optimistic): Minimum chunks per list: 4
225s Would take minimum 256.000000 bytes to make perfect hash.
225s Hashing 26.14 KB of sequence requires: 
225s  ~ linear (in seq length) hashing cost of 52.27 KB
225s  ~ linear (in seq length) expected anchor cost of 627.28 KB
225s Initial hash table uses: 256 bytes (4 bits, 16 entries)
225s Expected memory usage (without anchors): 52.52 KB
225s Expected memory usage (with anchors): 679.80 KB
225s Hash parameters computed in 0.134 seconds
225s Creating storage structures: 16 entries in 256 bytes space.
225s Storage structures created in: 0.000 seconds
225s 
225s Hashing NZ_GG705081.fna forwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705081.fna backwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705081.gbk forwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705081.gbk backwards
225s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Initial hashing took: 0.005 seconds
225s Extracting anchors from hash-space.
225s  (T -0.016 seconds) ETA: Thu Mar 14 20:18:06 2024
225s  6%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 18%. (T -0.011 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 31%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 43%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 56%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 68%. (T -0.004 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 81%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 93%.
225s Anchor extraction completed in: 0.019 seconds
225s Total anchors: 0
225s Anchor extraction + merge time: 0.019 seconds
225s Total processing time: 0.159 seconds
225s Writing anchors...
225s Total seeds used in anchors: 16
225s Hash performance:
225s  Keys used: 16 out of 16 possible (100.00%).
225s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
225s  Average pigeons per pigeon hole: 1
225s Writing 16 repeats...Output writing finished in: 0.005 seconds
225s Total time: 0.164 seconds
225s Murasaki finished!
225s PASSED MURASAKI
225s 
225s Testing Genepare on NZ_GG705081.fna
225s 1001
225s PASSED GENEPARSE
225s 
225s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
225s Testing mbfa on NZ_GG705081.fna
225s PASSED mbfa
225s 
225s Test Murasaki on NZ_GG705082.fna
225s Verbosity level is: 0
225s Writing to: output/test
225s Pattern is: 101
225s Max usable hash bits: 27
225s Hit filter is: 0
225s Hash table type is: EcoHash
225s Hashing every: 1 base
225s Histogram detail is: 0
225s Hashing function is: 3
225s Collision profiling is: disabled
225s Repeats are: unmasked
225s Mergefilter is at: 100
225s Random seed: 1710447486 (automatic)
225s Bitscore output: on
225s Leave status records: no
225s Join neighbors is: off
225s Target memory is: 1.24 GB
225s Retain members is: true
225s Store repeatmap? yes
225s Reverse complement data is generated on the fly
225s Rifts allowed: 0
225s Fuzzy Extension: yes
225s Score by minimum pair: yes
225s Gapped anchors: no
225s Large sequence support is: enabled => seqpos is 8 bytes
225s Murasaki version 1.68.6 (LARGESEQ)
225s Loading NZ_GG705082.fna
225s Read 6008bp (5.87 KBp) in 0.000 seconds (12.1 MBp/s)
225s Done with forward strand (6008bp). Preparing reverse complement...
225s  <-> Reversing metdata.
225s Done.
225s Seq NZ_GG705082.fna loaded. 5.87 KB
225s Loading NZ_GG705082.gbk
225s Read 6008bp (5.87 KBp) in 0.001 seconds (11.3 MBp/s)
225s Done with forward strand (6008bp). Preparing reverse complement...
225s  <-> Reversing metdata.
225s Done.
225s Seq NZ_GG705082.gbk loaded. 5.87 KB
225s Sequence loading took: 0.001 seconds
225s Forward frequencies:  A:33.0892%  C:18.1591%  G:17.6265%  T:31.1252%
225s Global base frequencies:  A/T:64.2144%  C/G:35.7856%
225s Pat: 3 bases long with weight 2
225s    1 101 
225s Computing hash parameters...
225s Using 4 hashbits
225s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 91%........
225s Acceptable hash function found after 1000 cycles.
225s Best uses 2/2 bases and has 0 empties from 2 inputs.
225s Score: 0.96875 (cf. worst: -4.51562)
225s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
225s Total correlation penalty: 0
225s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
225s                                             10
225s                                             ==
225s w[ 0]>>29:                                 -.C
225s w[ 0]>>30:                                  A.-
225s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
225s Ecolist (optimistic): Expcted entries per list: 11
225s Ecolist (optimistic): Minimum chunks per list: 4
225s Would take minimum 256.000000 bytes to make perfect hash.
225s Hashing 23.47 KB of sequence requires: 
225s  ~ linear (in seq length) hashing cost of 46.94 KB
225s  ~ linear (in seq length) expected anchor cost of 563.25 KB
225s Initial hash table uses: 256 bytes (4 bits, 16 entries)
225s Expected memory usage (without anchors): 47.19 KB
225s Expected memory usage (with anchors): 610.44 KB
225s Hash parameters computed in 0.135 seconds
225s Creating storage structures: 16 entries in 256 bytes space.
225s Storage structures created in: 0.000 seconds
225s 
225s Hashing NZ_GG705082.fna forwards
225s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705082.fna backwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705082.gbk forwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705082.gbk backwards
225s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Initial hashing took: 0.007 seconds
225s Extracting anchors from hash-space.
225s  (T -0.016 seconds) ETA: Thu Mar 14 20:18:06 2024
225s  6%. (T -0.008 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 18%. (T -0.010 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 31%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 43%. (T -0.008 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 56%. (T -0.005 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 68%. (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 81%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 93%.
225s Anchor extraction completed in: 0.017 seconds
225s Total anchors: 0
225s Anchor extraction + merge time: 0.017 seconds
225s Total processing time: 0.159 seconds
225s Writing anchors...
225s Total seeds used in anchors: 16
225s Hash performance:
225s  Keys used: 16 out of 16 possible (100.00%).
225s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
225s  Average pigeons per pigeon hole: 1
225s Writing 16 repeats...Output writing finished in: 0.005 seconds
225s Total time: 0.164 seconds
225s Murasaki finished!
225s PASSED MURASAKI
225s 
225s Testing Genepare on NZ_GG705082.fna
225s 1001
225s PASSED GENEPARSE
225s 
225s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
225s Testing mbfa on NZ_GG705082.fna
225s PASSED mbfa
225s 
225s Test Murasaki on NZ_GG705083.fna
225s Verbosity level is: 0
225s Writing to: output/test
225s Pattern is: 101
225s Max usable hash bits: 27
225s Hit filter is: 0
225s Hash table type is: EcoHash
225s Hashing every: 1 base
225s Histogram detail is: 0
225s Hashing function is: 3
225s Collision profiling is: disabled
225s Repeats are: unmasked
225s Mergefilter is at: 100
225s Random seed: 1710447486 (automatic)
225s Bitscore output: on
225s Leave status records: no
225s Join neighbors is: off
225s Target memory is: 1.24 GB
225s Retain members is: true
225s Store repeatmap? yes
225s Reverse complement data is generated on the fly
225s Rifts allowed: 0
225s Fuzzy Extension: yes
225s Score by minimum pair: yes
225s Gapped anchors: no
225s Large sequence support is: enabled => seqpos is 8 bytes
225s Murasaki version 1.68.6 (LARGESEQ)
225s Loading NZ_GG705083.fna
225s Read 5476bp (5.35 KBp) in 0.001 seconds (9.8 MBp/s)
225s Done with forward strand (5476bp). Preparing reverse complement...
225s  <-> Reversing metdata.
225s Done.
225s Seq NZ_GG705083.fna loaded. 5.35 KB
225s Loading NZ_GG705083.gbk
225s Read 5476bp (5.35 KBp) in 0.000 seconds (10.7 MBp/s)
225s Done with forward strand (5476bp). Preparing reverse complement...
225s  <-> Reversing metdata.
225s Done.
225s Seq NZ_GG705083.gbk loaded. 5.35 KB
225s Sequence loading took: 0.001 seconds
225s Forward frequencies:  A:28.7071%  C:18.6815%  G:17.7137%  T:34.8977%
225s Global base frequencies:  A/T:63.6048%  C/G:36.3952%
225s Pat: 3 bases long with weight 2
225s    1 101 
225s Computing hash parameters...
225s Using 4 hashbits
225s  0%......... (T -0.126 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 91%........
225s Acceptable hash function found after 1000 cycles.
225s Best uses 2/2 bases and has 0 empties from 2 inputs.
225s Score: 0.96875 (cf. worst: -4.51562)
225s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
225s Total correlation penalty: 0
225s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
225s                                             10
225s                                             ==
225s w[ 0]>>29:                                 -.C
225s w[ 0]>>30:                                  A.-
225s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
225s Ecolist (optimistic): Expcted entries per list: 11
225s Ecolist (optimistic): Minimum chunks per list: 4
225s Would take minimum 256.000000 bytes to make perfect hash.
225s Hashing 21.39 KB of sequence requires: 
225s  ~ linear (in seq length) hashing cost of 42.78 KB
225s  ~ linear (in seq length) expected anchor cost of 513.38 KB
225s Initial hash table uses: 256 bytes (4 bits, 16 entries)
225s Expected memory usage (without anchors): 43.03 KB
225s Expected memory usage (with anchors): 556.41 KB
225s Hash parameters computed in 0.134 seconds
225s Creating storage structures: 16 entries in 256 bytes space.
225s Storage structures created in: 0.000 seconds
225s 
225s Hashing NZ_GG705083.fna forwards
225s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705083.fna backwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705083.gbk forwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Hashing NZ_GG705083.gbk backwards
225s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 90%.........
225s Initial hashing took: 0.007 seconds
225s Extracting anchors from hash-space.
225s  (T -0.013 seconds) ETA: Thu Mar 14 20:18:06 2024
225s  6%. (T -0.007 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 18%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 31%. (T -0.007 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 43%. (T -0.007 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 56%. (T -0.005 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 68%. (T -0.003 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 81%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:06 2024
225s 93%.
225s Anchor extraction completed in: 0.015 seconds
225s Total anchors: 0
225s Anchor extraction + merge time: 0.015 seconds
225s Total processing time: 0.158 seconds
225s Writing anchors...
225s Total seeds used in anchors: 16
225s Hash performance:
225s  Keys used: 16 out of 16 possible (100.00%).
225s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
225s  Average pigeons per pigeon hole: 1
225s Writing 16 repeats...Output writing finished in: 0.004 seconds
225s Total time: 0.162 seconds
225s Murasaki finished!
225s PASSED MURASAKI
225s 
225s Testing Genepare on NZ_GG705083.fna
225s 1001
225s PASSED GENEPARSE
225s 
225s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
225s Testing mbfa on NZ_GG705083.fna
225s PASSED mbfa
225s 
225s Test Murasaki on NZ_GG705084.fna
225s Verbosity level is: 0
225s Writing to: output/test
225s Pattern is: 101
225s Max usable hash bits: 27
225s Hit filter is: 0
225s Hash table type is: EcoHash
225s Hashing every: 1 base
225s Histogram detail is: 0
225s Hashing function is: 3
225s Collision profiling is: disabled
225s Repeats are: unmasked
225s Mergefilter is at: 100
225s Random seed: 1710447486 (automatic)
225s Bitscore output: on
225s Leave status records: no
225s Join neighbors is: off
225s Target memory is: 1.24 GB
225s Retain members is: true
225s Store repeatmap? yes
225s Reverse complement data is generated on the fly
225s Rifts allowed: 0
225s Fuzzy Extension: yes
225s Score by minimum pair: yes
225s Gapped anchors: no
225s Large sequence support is: enabled => seqpos is 8 bytes
225s Murasaki version 1.68.6 (LARGESEQ)
225s Loading NZ_GG705084.fna
225s Read 5223bp (5.10 KBp) in 0.000 seconds (11.3 MBp/s)
225s Done with forward strand (5223bp). Preparing reverse complement...
225s  <-> Reversing metdata.
225s Done.
225s Seq NZ_GG705084.fna loaded. 5.10 KB
225s Loading NZ_GG705084.gbk
225s Read 5223bp (5.10 KBp) in 0.001 seconds (8.9 MBp/s)
225s Done with forward strand (5223bp). Preparing reverse complement...
225s  <-> Reversing metdata.
225s Done.
225s Seq NZ_GG705084.gbk loaded. 5.10 KB
225s Sequence loading took: 0.001 seconds
225s Forward frequencies:  A:27.8384%  C:19.7588%  G:16.906%  T:35.4968%
225s Global base frequencies:  A/T:63.3352%  C/G:36.6648%
225s Pat: 3 bases long with weight 2
225s    1 101 
225s Computing hash parameters...
225s Using 4 hashbits
225s  0%......... (T -0.122 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 91%........
226s Acceptable hash function found after 1000 cycles.
226s Best uses 2/2 bases and has 0 empties from 2 inputs.
226s Score: 0.96875 (cf. worst: -4.51562)
226s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
226s Total correlation penalty: 0
226s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
226s                                             10
226s                                             ==
226s w[ 0]>>29:                                 -.C
226s w[ 0]>>30:                                  A.-
226s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
226s Ecolist (optimistic): Expcted entries per list: 11
226s Ecolist (optimistic): Minimum chunks per list: 4
226s Would take minimum 256.000000 bytes to make perfect hash.
226s Hashing 20.40 KB of sequence requires: 
226s  ~ linear (in seq length) hashing cost of 40.80 KB
226s  ~ linear (in seq length) expected anchor cost of 489.66 KB
226s Initial hash table uses: 256 bytes (4 bits, 16 entries)
226s Expected memory usage (without anchors): 41.05 KB
226s Expected memory usage (with anchors): 530.70 KB
226s Hash parameters computed in 0.133 seconds
226s Creating storage structures: 16 entries in 256 bytes space.
226s Storage structures created in: 0.000 seconds
226s 
226s Hashing NZ_GG705084.fna forwards
226s  0%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Hashing NZ_GG705084.fna backwards
226s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Hashing NZ_GG705084.gbk forwards
226s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Hashing NZ_GG705084.gbk backwards
226s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Initial hashing took: 0.004 seconds
226s Extracting anchors from hash-space.
226s  (T -0.012 seconds) ETA: Thu Mar 14 20:18:07 2024
226s  6%. (T -0.007 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 18%. (T -0.008 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 31%. (T -0.007 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 43%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 56%. (T -0.005 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 68%. (T -0.003 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 81%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 93%.
226s Anchor extraction completed in: 0.014 seconds
226s Total anchors: 0
226s Anchor extraction + merge time: 0.014 seconds
226s Total processing time: 0.153 seconds
226s Writing anchors...
226s Total seeds used in anchors: 16
226s Hash performance:
226s  Keys used: 16 out of 16 possible (100.00%).
226s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
226s  Average pigeons per pigeon hole: 1
226s Writing 16 repeats...Output writing finished in: 0.004 seconds
226s Total time: 0.157 seconds
226s Murasaki finished!
226s PASSED MURASAKI
226s 
226s Testing Genepare on NZ_GG705084.fna
226s 1001
226s PASSED GENEPARSE
226s 
226s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
226s Testing mbfa on NZ_GG705084.fna
226s PASSED mbfa
226s 
226s Test Murasaki on NZ_GG705085.fna
226s Verbosity level is: 0
226s Writing to: output/test
226s Pattern is: 101
226s Max usable hash bits: 27
226s Hit filter is: 0
226s Hash table type is: EcoHash
226s Hashing every: 1 base
226s Histogram detail is: 0
226s Hashing function is: 3
226s Collision profiling is: disabled
226s Repeats are: unmasked
226s Mergefilter is at: 100
226s Random seed: 1710447487 (automatic)
226s Bitscore output: on
226s Leave status records: no
226s Join neighbors is: off
226s Target memory is: 1.24 GB
226s Retain members is: true
226s Store repeatmap? yes
226s Reverse complement data is generated on the fly
226s Rifts allowed: 0
226s Fuzzy Extension: yes
226s Score by minimum pair: yes
226s Gapped anchors: no
226s Large sequence support is: enabled => seqpos is 8 bytes
226s Murasaki version 1.68.6 (LARGESEQ)
226s Loading NZ_GG705085.fna
226s Read 4549bp (4.44 KBp) in 0.001 seconds (6.6 MBp/s)
226s Done with forward strand (5055bp). Preparing reverse complement...
226s  <-> Reversing metdata.
226s Done.
226s Seq NZ_GG705085.fna loaded. 4.94 KB
226s Loading NZ_GG705085.gbk
226s Read 4549bp (4.44 KBp) in 0.001 seconds (7.6 MBp/s)
226s Done with forward strand (5055bp). Preparing reverse complement...
226s  <-> Reversing metdata.
226s Done.
226s Seq NZ_GG705085.gbk loaded. 4.94 KB
226s Sequence loading took: 0.002 seconds
226s Forward frequencies:  A:26.6212%  C:21.1255%  G:30.0286%  T:22.2247%
226s Global base frequencies:  A/T:48.8459%  C/G:51.1541%
226s Pat: 3 bases long with weight 2
226s    1 101 
226s Computing hash parameters...
226s Using 4 hashbits
226s  0%......... (T -0.124 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 91%........
226s Acceptable hash function found after 1000 cycles.
226s Best uses 2/2 bases and has 0 empties from 2 inputs.
226s Score: 0.96875 (cf. worst: -4.51562)
226s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
226s Total correlation penalty: 0
226s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
226s                                             10
226s                                             ==
226s w[ 0]>>29:                                 -.C
226s w[ 0]>>30:                                  A.-
226s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
226s Ecolist (optimistic): Expcted entries per list: 11
226s Ecolist (optimistic): Minimum chunks per list: 4
226s Would take minimum 256.000000 bytes to make perfect hash.
226s Hashing 17.77 KB of sequence requires: 
226s  ~ linear (in seq length) hashing cost of 35.53 KB
226s  ~ linear (in seq length) expected anchor cost of 473.91 KB
226s Initial hash table uses: 256 bytes (4 bits, 16 entries)
226s Expected memory usage (without anchors): 35.78 KB
226s Expected memory usage (with anchors): 509.69 KB
226s Hash parameters computed in 0.135 seconds
226s Creating storage structures: 16 entries in 256 bytes space.
226s Storage structures created in: 0.000 seconds
226s 
226s Hashing NZ_GG705085.fna forwards
226s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Hashing NZ_GG705085.fna backwards
226s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Hashing NZ_GG705085.gbk forwards
226s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Hashing NZ_GG705085.gbk backwards
226s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Initial hashing took: 0.004 seconds
226s Extracting anchors from hash-space.
226s  (T -0.010 seconds) ETA: Thu Mar 14 20:18:07 2024
226s  6%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 18%. (T -0.008 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 31%. (T -0.007 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 43%. (T -0.005 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 56%. (T -0.004 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 68%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 81%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 93%.
226s Anchor extraction completed in: 0.012 seconds
226s Total anchors: 0
226s Anchor extraction + merge time: 0.013 seconds
226s Total processing time: 0.154 seconds
226s Writing anchors...
226s Total seeds used in anchors: 16
226s Hash performance:
226s  Keys used: 16 out of 16 possible (100.00%).
226s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
226s  Average pigeons per pigeon hole: 1
226s Writing 16 repeats...Output writing finished in: 0.004 seconds
226s Total time: 0.158 seconds
226s Murasaki finished!
226s PASSED MURASAKI
226s 
226s Testing Genepare on NZ_GG705085.fna
226s 1001
226s PASSED GENEPARSE
226s 
226s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
226s Testing mbfa on NZ_GG705085.fna
226s PASSED mbfa
226s 
226s Test Murasaki on NZ_GG705086.fna
226s Verbosity level is: 0
226s Writing to: output/test
226s Pattern is: 101
226s Max usable hash bits: 27
226s Hit filter is: 0
226s Hash table type is: EcoHash
226s Hashing every: 1 base
226s Histogram detail is: 0
226s Hashing function is: 3
226s Collision profiling is: disabled
226s Repeats are: unmasked
226s Mergefilter is at: 100
226s Random seed: 1710447487 (automatic)
226s Bitscore output: on
226s Leave status records: no
226s Join neighbors is: off
226s Target memory is: 1.24 GB
226s Retain members is: true
226s Store repeatmap? yes
226s Reverse complement data is generated on the fly
226s Rifts allowed: 0
226s Fuzzy Extension: yes
226s Score by minimum pair: yes
226s Gapped anchors: no
226s Large sequence support is: enabled => seqpos is 8 bytes
226s Murasaki version 1.68.6 (LARGESEQ)
226s Loading NZ_GG705086.fna
226s Read 4868bp (4.75 KBp) in 0.000 seconds (9.9 MBp/s)
226s Done with forward strand (4868bp). Preparing reverse complement...
226s  <-> Reversing metdata.
226s Done.
226s Seq NZ_GG705086.fna loaded. 4.75 KB
226s Loading NZ_GG705086.gbk
226s Read 4868bp (4.75 KBp) in 0.000 seconds (9.9 MBp/s)
226s Done with forward strand (4868bp). Preparing reverse complement...
226s  <-> Reversing metdata.
226s Done.
226s Seq NZ_GG705086.gbk loaded. 4.75 KB
226s Sequence loading took: 0.001 seconds
226s Forward frequencies:  A:26.9104%  C:22.5349%  G:22.4938%  T:28.0608%
226s Global base frequencies:  A/T:54.9712%  C/G:45.0288%
226s Pat: 3 bases long with weight 2
226s    1 101 
226s Computing hash parameters...
226s Using 4 hashbits
226s  0%......... (T -0.123 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.082 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.072 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.057 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.043 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.028 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 91%........
226s Acceptable hash function found after 1000 cycles.
226s Best uses 2/2 bases and has 0 empties from 2 inputs.
226s Score: 0.96875 (cf. worst: -4.51562)
226s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
226s Total correlation penalty: 0
226s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
226s                                             10
226s                                             ==
226s w[ 0]>>29:                                 -.C
226s w[ 0]>>30:                                  A.-
226s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
226s Ecolist (optimistic): Expcted entries per list: 11
226s Ecolist (optimistic): Minimum chunks per list: 4
226s Would take minimum 256.000000 bytes to make perfect hash.
226s Hashing 19.02 KB of sequence requires: 
226s  ~ linear (in seq length) hashing cost of 38.03 KB
226s  ~ linear (in seq length) expected anchor cost of 456.38 KB
226s Initial hash table uses: 256 bytes (4 bits, 16 entries)
226s Expected memory usage (without anchors): 38.28 KB
226s Expected memory usage (with anchors): 494.66 KB
226s Hash parameters computed in 0.140 seconds
226s Creating storage structures: 16 entries in 256 bytes space.
226s Storage structures created in: 0.000 seconds
226s 
226s Hashing NZ_GG705086.fna forwards
226s  0%......... (T -0.008 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Hashing NZ_GG705086.fna backwards
226s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Hashing NZ_GG705086.gbk forwards
226s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Hashing NZ_GG705086.gbk backwards
226s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 90%.........
226s Initial hashing took: 0.006 seconds
226s Extracting anchors from hash-space.
226s  (T -0.014 seconds) ETA: Thu Mar 14 20:18:07 2024
226s  6%. (T -0.010 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 18%. (T -0.009 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 31%. (T -0.007 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 43%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 56%. (T -0.004 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 68%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 81%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 93%.
226s Anchor extraction completed in: 0.013 seconds
226s Total anchors: 0
226s Anchor extraction + merge time: 0.013 seconds
226s Total processing time: 0.161 seconds
226s Writing anchors...
226s Total seeds used in anchors: 16
226s Hash performance:
226s  Keys used: 16 out of 16 possible (100.00%).
226s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
226s  Average pigeons per pigeon hole: 1
226s Writing 16 repeats...Output writing finished in: 0.004 seconds
226s Total time: 0.165 seconds
226s Murasaki finished!
226s PASSED MURASAKI
226s 
226s Testing Genepare on NZ_GG705086.fna
226s 1001
226s PASSED GENEPARSE
226s 
226s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
226s Testing mbfa on NZ_GG705086.fna
226s PASSED mbfa
226s 
226s Test Murasaki on NZ_GG705087.fna
226s Verbosity level is: 0
226s Writing to: output/test
226s Pattern is: 101
226s Max usable hash bits: 27
226s Hit filter is: 0
226s Hash table type is: EcoHash
226s Hashing every: 1 base
226s Histogram detail is: 0
226s Hashing function is: 3
226s Collision profiling is: disabled
226s Repeats are: unmasked
226s Mergefilter is at: 100
226s Random seed: 1710447487 (automatic)
226s Bitscore output: on
226s Leave status records: no
226s Join neighbors is: off
226s Target memory is: 1.24 GB
226s Retain members is: true
226s Store repeatmap? yes
226s Reverse complement data is generated on the fly
226s Rifts allowed: 0
226s Fuzzy Extension: yes
226s Score by minimum pair: yes
226s Gapped anchors: no
226s Large sequence support is: enabled => seqpos is 8 bytes
226s Murasaki version 1.68.6 (LARGESEQ)
226s Loading NZ_GG705087.fna
226s Read 4863bp (4.75 KBp) in 0.000 seconds (9.5 MBp/s)
226s Done with forward strand (4863bp). Preparing reverse complement...
226s  <-> Reversing metdata.
226s Done.
226s Seq NZ_GG705087.fna loaded. 4.75 KB
226s Loading NZ_GG705087.gbk
226s Read 4863bp (4.75 KBp) in 0.001 seconds (7.7 MBp/s)
226s Done with forward strand (4863bp). Preparing reverse complement...
226s  <-> Reversing metdata.
226s Done.
226s Seq NZ_GG705087.gbk loaded. 4.75 KB
226s Sequence loading took: 0.001 seconds
226s Forward frequencies:  A:34.0119%  C:17.4378%  G:19.2679%  T:29.2823%
226s Global base frequencies:  A/T:63.2943%  C/G:36.7057%
226s Pat: 3 bases long with weight 2
226s    1 101 
226s Computing hash parameters...
226s Using 4 hashbits
226s  0%......... (T -0.126 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 10%......... (T -0.110 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:07 2024
226s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 91%........
227s Acceptable hash function found after 1000 cycles.
227s Best uses 2/2 bases and has 0 empties from 2 inputs.
227s Score: 0.96875 (cf. worst: -4.51562)
227s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
227s Total correlation penalty: 0
227s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
227s                                             10
227s                                             ==
227s w[ 0]>>29:                                 -.C
227s w[ 0]>>30:                                  A.-
227s Ecolist (optimistic): (seqbits: 2 idxbits: 14 minBlocks: 1 initblocks: 1)
227s Ecolist (optimistic): Expcted entries per list: 11
227s Ecolist (optimistic): Minimum chunks per list: 4
227s Would take minimum 256.000000 bytes to make perfect hash.
227s Hashing 19.00 KB of sequence requires: 
227s  ~ linear (in seq length) hashing cost of 37.98 KB
227s  ~ linear (in seq length) expected anchor cost of 455.91 KB
227s Initial hash table uses: 256 bytes (4 bits, 16 entries)
227s Expected memory usage (without anchors): 38.23 KB
227s Expected memory usage (with anchors): 494.14 KB
227s Hash parameters computed in 0.135 seconds
227s Creating storage structures: 16 entries in 256 bytes space.
227s Storage structures created in: 0.000 seconds
227s 
227s Hashing NZ_GG705087.fna forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 90%.........
227s Hashing NZ_GG705087.fna backwards
227s  0%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 90%.........
227s Hashing NZ_GG705087.gbk forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 90%.........
227s Hashing NZ_GG705087.gbk backwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 90%.........
227s Initial hashing took: 0.003 seconds
227s Extracting anchors from hash-space.
227s  (T -0.018 seconds) ETA: Thu Mar 14 20:18:07 2024
227s  6%. (T -0.012 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 18%. (T -0.011 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 31%. (T -0.008 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 43%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 56%. (T -0.004 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 68%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 81%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 93%.
227s Anchor extraction completed in: 0.014 seconds
227s Total anchors: 0
227s Anchor extraction + merge time: 0.014 seconds
227s Total processing time: 0.153 seconds
227s Writing anchors...
227s Total seeds used in anchors: 16
227s Hash performance:
227s  Keys used: 16 out of 16 possible (100.00%).
227s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
227s  Average pigeons per pigeon hole: 1
227s Writing 16 repeats...Output writing finished in: 0.003 seconds
227s Total time: 0.157 seconds
227s Murasaki finished!
227s PASSED MURASAKI
227s 
227s Testing Genepare on NZ_GG705087.fna
227s 1001
227s PASSED GENEPARSE
227s 
227s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
227s Testing mbfa on NZ_GG705087.fna
227s PASSED mbfa
227s 
227s Test Murasaki on NZ_GG705088.fna
227s Verbosity level is: 0
227s Writing to: output/test
227s Pattern is: 101
227s Max usable hash bits: 27
227s Hit filter is: 0
227s Hash table type is: EcoHash
227s Hashing every: 1 base
227s Histogram detail is: 0
227s Hashing function is: 3
227s Collision profiling is: disabled
227s Repeats are: unmasked
227s Mergefilter is at: 100
227s Random seed: 1710447487 (automatic)
227s Bitscore output: on
227s Leave status records: no
227s Join neighbors is: off
227s Target memory is: 1.24 GB
227s Retain members is: true
227s Store repeatmap? yes
227s Reverse complement data is generated on the fly
227s Rifts allowed: 0
227s Fuzzy Extension: yes
227s Score by minimum pair: yes
227s Gapped anchors: no
227s Large sequence support is: enabled => seqpos is 8 bytes
227s Murasaki version 1.68.6 (LARGESEQ)
227s Loading NZ_GG705088.fna
227s Read 2146bp (2.10 KBp) in 0.000 seconds (4.2 MBp/s)
227s Done with forward strand (2146bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705088.fna loaded. 2.10 KB
227s Loading NZ_GG705088.gbk
227s Read 2146bp (2.10 KBp) in 0.000 seconds (5.5 MBp/s)
227s Done with forward strand (2146bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705088.gbk loaded. 2.10 KB
227s Sequence loading took: 0.001 seconds
227s Forward frequencies:  A:27.4464%  C:18.1733%  G:20.876%  T:33.5042%
227s Global base frequencies:  A/T:60.9506%  C/G:39.0494%
227s Pat: 3 bases long with weight 2
227s    1 101 
227s Computing hash parameters...
227s Using 4 hashbits
227s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 91%........
227s Acceptable hash function found after 1000 cycles.
227s Best uses 2/2 bases and has 0 empties from 2 inputs.
227s Score: 0.96875 (cf. worst: -4.51562)
227s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
227s Total correlation penalty: 0
227s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
227s                                             10
227s                                             ==
227s w[ 0]>>29:                                 -.C
227s w[ 0]>>30:                                  A.-
227s Ecolist (optimistic): (seqbits: 2 idxbits: 13 minBlocks: 1 initblocks: 1)
227s Ecolist (optimistic): Expcted entries per list: 10
227s Ecolist (optimistic): Minimum chunks per list: 4
227s Would take minimum 256.000000 bytes to make perfect hash.
227s Hashing 8.38 KB of sequence requires: 
227s  ~ linear (in seq length) hashing cost of 15.72 KB
227s  ~ linear (in seq length) expected anchor cost of 201.19 KB
227s Initial hash table uses: 256 bytes (4 bits, 16 entries)
227s Expected memory usage (without anchors): 15.97 KB
227s Expected memory usage (with anchors): 217.16 KB
227s Hash parameters computed in 0.135 seconds
227s Creating storage structures: 16 entries in 256 bytes space.
227s Storage structures created in: 0.000 seconds
227s 
227s Hashing NZ_GG705088.fna forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 90%.........
227s Hashing NZ_GG705088.fna backwards
227s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 90%.........
227s Hashing NZ_GG705088.gbk forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 90%.........
227s Hashing NZ_GG705088.gbk backwards
227s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 90%.........
227s Initial hashing took: 0.003 seconds
227s Extracting anchors from hash-space.
227s  (T -0.007 seconds) ETA: Thu Mar 14 20:18:07 2024
227s  6%. (T -0.006 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 18%. (T -0.005 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 31%. (T -0.003 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 43%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 56%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 68%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:07 2024
227s 93%.
227s Anchor extraction completed in: 0.005 seconds
227s Total anchors: 0
227s Anchor extraction + merge time: 0.005 seconds
227s Total processing time: 0.145 seconds
227s Writing anchors...
227s Total seeds used in anchors: 16
227s Hash performance:
227s  Keys used: 16 out of 16 possible (100.00%).
227s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
227s  Average pigeons per pigeon hole: 1
227s Writing 16 repeats...Output writing finished in: 0.002 seconds
227s Total time: 0.147 seconds
227s Murasaki finished!
227s PASSED MURASAKI
227s 
227s Testing Genepare on NZ_GG705088.fna
227s 1001
227s PASSED GENEPARSE
227s 
227s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
227s Testing mbfa on NZ_GG705088.fna
227s PASSED mbfa
227s 
227s Test Murasaki on NZ_GG705089.fna
227s Verbosity level is: 0
227s Writing to: output/test
227s Pattern is: 101
227s Max usable hash bits: 27
227s Hit filter is: 0
227s Hash table type is: EcoHash
227s Hashing every: 1 base
227s Histogram detail is: 0
227s Hashing function is: 3
227s Collision profiling is: disabled
227s Repeats are: unmasked
227s Mergefilter is at: 100
227s Random seed: 1710447487 (automatic)
227s Bitscore output: on
227s Leave status records: no
227s Join neighbors is: off
227s Target memory is: 1.24 GB
227s Retain members is: true
227s Store repeatmap? yes
227s Reverse complement data is generated on the fly
227s Rifts allowed: 0
227s Fuzzy Extension: yes
227s Score by minimum pair: yes
227s Gapped anchors: no
227s Large sequence support is: enabled => seqpos is 8 bytes
227s Murasaki version 1.68.6 (LARGESEQ)
227s Loading NZ_GG705089.fna
227s Read 1396bp (1.36 KBp) in 0.000 seconds (4.8 MBp/s)
227s Done with forward strand (1396bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705089.fna loaded. 1.36 KB
227s Loading NZ_GG705089.gbk
227s Read 1396bp (1.36 KBp) in 0.000 seconds (5.1 MBp/s)
227s Done with forward strand (1396bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705089.gbk loaded. 1.36 KB
227s Sequence loading took: 0.001 seconds
227s Forward frequencies:  A:33.4527%  C:18.0516%  G:19.8424%  T:28.6533%
227s Global base frequencies:  A/T:62.106%  C/G:37.894%
227s Pat: 3 bases long with weight 2
227s    1 101 
227s Computing hash parameters...
227s Using 4 hashbits
227s  0%......... (T -0.126 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.110 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 91%........
227s Acceptable hash function found after 1000 cycles.
227s Best uses 2/2 bases and has 0 empties from 2 inputs.
227s Score: 0.96875 (cf. worst: -4.51562)
227s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
227s Total correlation penalty: 0
227s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
227s                                             10
227s                                             ==
227s w[ 0]>>29:                                 -.C
227s w[ 0]>>30:                                  A.-
227s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
227s Ecolist (optimistic): Expcted entries per list: 9
227s Ecolist (optimistic): Minimum chunks per list: 4
227s Would take minimum 256.000000 bytes to make perfect hash.
227s Hashing 5.45 KB of sequence requires: 
227s  ~ linear (in seq length) hashing cost of 9.54 KB
227s  ~ linear (in seq length) expected anchor cost of 130.88 KB
227s Initial hash table uses: 256 bytes (4 bits, 16 entries)
227s Expected memory usage (without anchors): 9.79 KB
227s Expected memory usage (with anchors): 140.67 KB
227s Hash parameters computed in 0.135 seconds
227s Creating storage structures: 16 entries in 256 bytes space.
227s Storage structures created in: 0.000 seconds
227s 
227s Hashing NZ_GG705089.fna forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705089.fna backwards
227s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705089.gbk forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705089.gbk backwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Initial hashing took: 0.004 seconds
227s Extracting anchors from hash-space.
227s  (T -0.004 seconds) ETA: Thu Mar 14 20:18:08 2024
227s  6%. (T -0.003 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 18%. (T -0.003 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 31%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 68%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 93%.
227s Anchor extraction completed in: 0.004 seconds
227s Total anchors: 0
227s Anchor extraction + merge time: 0.004 seconds
227s Total processing time: 0.144 seconds
227s Writing anchors...
227s Total seeds used in anchors: 16
227s Hash performance:
227s  Keys used: 16 out of 16 possible (100.00%).
227s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
227s  Average pigeons per pigeon hole: 1
227s Writing 16 repeats...Output writing finished in: 0.002 seconds
227s Total time: 0.146 seconds
227s Murasaki finished!
227s PASSED MURASAKI
227s 
227s Testing Genepare on NZ_GG705089.fna
227s 397
227s PASSED GENEPARSE
227s 
227s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
227s Testing mbfa on NZ_GG705089.fna
227s PASSED mbfa
227s 
227s Test Murasaki on NZ_GG705090.fna
227s Verbosity level is: 0
227s Writing to: output/test
227s Pattern is: 101
227s Max usable hash bits: 27
227s Hit filter is: 0
227s Hash table type is: EcoHash
227s Hashing every: 1 base
227s Histogram detail is: 0
227s Hashing function is: 3
227s Collision profiling is: disabled
227s Repeats are: unmasked
227s Mergefilter is at: 100
227s Random seed: 1710447488 (automatic)
227s Bitscore output: on
227s Leave status records: no
227s Join neighbors is: off
227s Target memory is: 1.24 GB
227s Retain members is: true
227s Store repeatmap? yes
227s Reverse complement data is generated on the fly
227s Rifts allowed: 0
227s Fuzzy Extension: yes
227s Score by minimum pair: yes
227s Gapped anchors: no
227s Large sequence support is: enabled => seqpos is 8 bytes
227s Murasaki version 1.68.6 (LARGESEQ)
227s Loading NZ_GG705090.fna
227s Read 1374bp (1.34 KBp) in 0.000 seconds (4.5 MBp/s)
227s Done with forward strand (1374bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705090.fna loaded. 1.34 KB
227s Loading NZ_GG705090.gbk
227s Read 1374bp (1.34 KBp) in 0.000 seconds (3.3 MBp/s)
227s Done with forward strand (1374bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705090.gbk loaded. 1.34 KB
227s Sequence loading took: 0.001 seconds
227s Forward frequencies:  A:29.6215%  C:22.7802%  G:22.6346%  T:24.9636%
227s Global base frequencies:  A/T:54.5852%  C/G:45.4148%
227s Pat: 3 bases long with weight 2
227s    1 101 
227s Computing hash parameters...
227s Using 4 hashbits
227s  0%......... (T -0.125 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.112 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.096 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.082 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.068 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 91%........
227s Acceptable hash function found after 1000 cycles.
227s Best uses 2/2 bases and has 0 empties from 2 inputs.
227s Score: 0.96875 (cf. worst: -4.51562)
227s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
227s Total correlation penalty: 0
227s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
227s                                             10
227s                                             ==
227s w[ 0]>>29:                                 -.C
227s w[ 0]>>30:                                  A.-
227s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
227s Ecolist (optimistic): Expcted entries per list: 9
227s Ecolist (optimistic): Minimum chunks per list: 4
227s Would take minimum 256.000000 bytes to make perfect hash.
227s Hashing 5.37 KB of sequence requires: 
227s  ~ linear (in seq length) hashing cost of 9.39 KB
227s  ~ linear (in seq length) expected anchor cost of 128.81 KB
227s Initial hash table uses: 256 bytes (4 bits, 16 entries)
227s Expected memory usage (without anchors): 9.64 KB
227s Expected memory usage (with anchors): 138.46 KB
227s Hash parameters computed in 0.135 seconds
227s Creating storage structures: 16 entries in 256 bytes space.
227s Storage structures created in: 0.000 seconds
227s 
227s Hashing NZ_GG705090.fna forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705090.fna backwards
227s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705090.gbk forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705090.gbk backwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Initial hashing took: 0.004 seconds
227s Extracting anchors from hash-space.
227s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 18%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 31%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 68%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 93%.
227s Anchor extraction completed in: 0.003 seconds
227s Total anchors: 0
227s Anchor extraction + merge time: 0.003 seconds
227s Total processing time: 0.144 seconds
227s Writing anchors...
227s Total seeds used in anchors: 16
227s Hash performance:
227s  Keys used: 16 out of 16 possible (100.00%).
227s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
227s  Average pigeons per pigeon hole: 1
227s Writing 16 repeats...Output writing finished in: 0.001 seconds
227s Total time: 0.145 seconds
227s Murasaki finished!
227s PASSED MURASAKI
227s 
227s Testing Genepare on NZ_GG705090.fna
227s 375
227s PASSED GENEPARSE
227s 
227s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
227s Testing mbfa on NZ_GG705090.fna
227s PASSED mbfa
227s 
227s Test Murasaki on NZ_GG705091.fna
227s Verbosity level is: 0
227s Writing to: output/test
227s Pattern is: 101
227s Max usable hash bits: 27
227s Hit filter is: 0
227s Hash table type is: EcoHash
227s Hashing every: 1 base
227s Histogram detail is: 0
227s Hashing function is: 3
227s Collision profiling is: disabled
227s Repeats are: unmasked
227s Mergefilter is at: 100
227s Random seed: 1710447488 (automatic)
227s Bitscore output: on
227s Leave status records: no
227s Join neighbors is: off
227s Target memory is: 1.24 GB
227s Retain members is: true
227s Store repeatmap? yes
227s Reverse complement data is generated on the fly
227s Rifts allowed: 0
227s Fuzzy Extension: yes
227s Score by minimum pair: yes
227s Gapped anchors: no
227s Large sequence support is: enabled => seqpos is 8 bytes
227s Murasaki version 1.68.6 (LARGESEQ)
227s Loading NZ_GG705091.fna
227s Read 1318bp (1.29 KBp) in 0.000 seconds (3.4 MBp/s)
227s Done with forward strand (1318bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705091.fna loaded. 1.29 KB
227s Loading NZ_GG705091.gbk
227s Read 1318bp (1.29 KBp) in 0.000 seconds (3.5 MBp/s)
227s Done with forward strand (1318bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705091.gbk loaded. 1.29 KB
227s Sequence loading took: 0.001 seconds
227s Forward frequencies:  A:29.742%  C:23.8998%  G:22.1548%  T:24.2033%
227s Global base frequencies:  A/T:53.9454%  C/G:46.0546%
227s Pat: 3 bases long with weight 2
227s    1 101 
227s Computing hash parameters...
227s Using 4 hashbits
227s  0%......... (T -0.124 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.068 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 91%........
227s Acceptable hash function found after 1000 cycles.
227s Best uses 2/2 bases and has 0 empties from 2 inputs.
227s Score: 0.96875 (cf. worst: -4.51562)
227s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
227s Total correlation penalty: 0
227s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
227s                                             10
227s                                             ==
227s w[ 0]>>29:                                 -.C
227s w[ 0]>>30:                                  A.-
227s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
227s Ecolist (optimistic): Expcted entries per list: 9
227s Ecolist (optimistic): Minimum chunks per list: 4
227s Would take minimum 256.000000 bytes to make perfect hash.
227s Hashing 5.15 KB of sequence requires: 
227s  ~ linear (in seq length) hashing cost of 9.01 KB
227s  ~ linear (in seq length) expected anchor cost of 123.56 KB
227s Initial hash table uses: 256 bytes (4 bits, 16 entries)
227s Expected memory usage (without anchors): 9.26 KB
227s Expected memory usage (with anchors): 132.82 KB
227s Hash parameters computed in 0.136 seconds
227s Creating storage structures: 16 entries in 256 bytes space.
227s Storage structures created in: 0.000 seconds
227s 
227s Hashing NZ_GG705091.fna forwards
227s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705091.fna backwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705091.gbk forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705091.gbk backwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Initial hashing took: 0.005 seconds
227s Extracting anchors from hash-space.
227s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 18%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 31%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 68%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 93%.
227s Anchor extraction completed in: 0.003 seconds
227s Total anchors: 0
227s Anchor extraction + merge time: 0.003 seconds
227s Total processing time: 0.146 seconds
227s Writing anchors...
227s Total seeds used in anchors: 16
227s Hash performance:
227s  Keys used: 16 out of 16 possible (100.00%).
227s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
227s  Average pigeons per pigeon hole: 1
227s Writing 16 repeats...Output writing finished in: 0.001 seconds
227s Total time: 0.147 seconds
227s Murasaki finished!
227s PASSED MURASAKI
227s 
227s Testing Genepare on NZ_GG705091.fna
227s 319
227s PASSED GENEPARSE
227s 
227s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
227s Testing mbfa on NZ_GG705091.fna
227s PASSED mbfa
227s 
227s Test Murasaki on NZ_GG705092.fna
227s Verbosity level is: 0
227s Writing to: output/test
227s Pattern is: 101
227s Max usable hash bits: 27
227s Hit filter is: 0
227s Hash table type is: EcoHash
227s Hashing every: 1 base
227s Histogram detail is: 0
227s Hashing function is: 3
227s Collision profiling is: disabled
227s Repeats are: unmasked
227s Mergefilter is at: 100
227s Random seed: 1710447488 (automatic)
227s Bitscore output: on
227s Leave status records: no
227s Join neighbors is: off
227s Target memory is: 1.24 GB
227s Retain members is: true
227s Store repeatmap? yes
227s Reverse complement data is generated on the fly
227s Rifts allowed: 0
227s Fuzzy Extension: yes
227s Score by minimum pair: yes
227s Gapped anchors: no
227s Large sequence support is: enabled => seqpos is 8 bytes
227s Murasaki version 1.68.6 (LARGESEQ)
227s Loading NZ_GG705092.fna
227s Read 1283bp (1.25 KBp) in 0.000 seconds (4.5 MBp/s)
227s Done with forward strand (1283bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705092.fna loaded. 1.25 KB
227s Loading NZ_GG705092.gbk
227s Read 1283bp (1.25 KBp) in 0.000 seconds (4.6 MBp/s)
227s Done with forward strand (1283bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705092.gbk loaded. 1.25 KB
227s Sequence loading took: 0.001 seconds
227s Forward frequencies:  A:23.6945%  C:21.0444%  G:25.3313%  T:29.9299%
227s Global base frequencies:  A/T:53.6243%  C/G:46.3757%
227s Pat: 3 bases long with weight 2
227s    1 101 
227s Computing hash parameters...
227s Using 4 hashbits
227s  0%......... (T -0.125 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 91%........
227s Acceptable hash function found after 1000 cycles.
227s Best uses 2/2 bases and has 0 empties from 2 inputs.
227s Score: 0.96875 (cf. worst: -4.51562)
227s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
227s Total correlation penalty: 0
227s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
227s                                             10
227s                                             ==
227s w[ 0]>>29:                                 -.C
227s w[ 0]>>30:                                  A.-
227s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
227s Ecolist (optimistic): Expcted entries per list: 9
227s Ecolist (optimistic): Minimum chunks per list: 4
227s Would take minimum 256.000000 bytes to make perfect hash.
227s Hashing 5.01 KB of sequence requires: 
227s  ~ linear (in seq length) hashing cost of 8.76 KB
227s  ~ linear (in seq length) expected anchor cost of 120.28 KB
227s Initial hash table uses: 256 bytes (4 bits, 16 entries)
227s Expected memory usage (without anchors): 9.01 KB
227s Expected memory usage (with anchors): 129.29 KB
227s Hash parameters computed in 0.135 seconds
227s Creating storage structures: 16 entries in 256 bytes space.
227s Storage structures created in: 0.000 seconds
227s 
227s Hashing NZ_GG705092.fna forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705092.fna backwards
227s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705092.gbk forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705092.gbk backwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Initial hashing took: 0.003 seconds
227s Extracting anchors from hash-space.
227s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 18%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 31%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 68%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 93%.
227s Anchor extraction completed in: 0.003 seconds
227s Total anchors: 0
227s Anchor extraction + merge time: 0.003 seconds
227s Total processing time: 0.142 seconds
227s Writing anchors...
227s Total seeds used in anchors: 16
227s Hash performance:
227s  Keys used: 16 out of 16 possible (100.00%).
227s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
227s  Average pigeons per pigeon hole: 1
227s Writing 16 repeats...Output writing finished in: 0.001 seconds
227s Total time: 0.143 seconds
227s Murasaki finished!
227s PASSED MURASAKI
227s 
227s Testing Genepare on NZ_GG705092.fna
227s 284
227s PASSED GENEPARSE
227s 
227s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
227s Testing mbfa on NZ_GG705092.fna
227s PASSED mbfa
227s 
227s Test Murasaki on NZ_GG705093.fna
227s Verbosity level is: 0
227s Writing to: output/test
227s Pattern is: 101
227s Max usable hash bits: 27
227s Hit filter is: 0
227s Hash table type is: EcoHash
227s Hashing every: 1 base
227s Histogram detail is: 0
227s Hashing function is: 3
227s Collision profiling is: disabled
227s Repeats are: unmasked
227s Mergefilter is at: 100
227s Random seed: 1710447488 (automatic)
227s Bitscore output: on
227s Leave status records: no
227s Join neighbors is: off
227s Target memory is: 1.24 GB
227s Retain members is: true
227s Store repeatmap? yes
227s Reverse complement data is generated on the fly
227s Rifts allowed: 0
227s Fuzzy Extension: yes
227s Score by minimum pair: yes
227s Gapped anchors: no
227s Large sequence support is: enabled => seqpos is 8 bytes
227s Murasaki version 1.68.6 (LARGESEQ)
227s Loading NZ_GG705093.fna
227s Read 1180bp (1.15 KBp) in 0.000 seconds (3.5 MBp/s)
227s Done with forward strand (1180bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705093.fna loaded. 1.15 KB
227s Loading NZ_GG705093.gbk
227s Read 1180bp (1.15 KBp) in 0.000 seconds (4.3 MBp/s)
227s Done with forward strand (1180bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705093.gbk loaded. 1.15 KB
227s Sequence loading took: 0.001 seconds
227s Forward frequencies:  A:31.9492%  C:16.1017%  G:19.8305%  T:32.1186%
227s Global base frequencies:  A/T:64.0678%  C/G:35.9322%
227s Pat: 3 bases long with weight 2
227s    1 101 
227s Computing hash parameters...
227s Using 4 hashbits
227s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 91%........
227s Acceptable hash function found after 1000 cycles.
227s Best uses 2/2 bases and has 0 empties from 2 inputs.
227s Score: 0.96875 (cf. worst: -4.51562)
227s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
227s Total correlation penalty: 0
227s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
227s                                             10
227s                                             ==
227s w[ 0]>>29:                                 -.C
227s w[ 0]>>30:                                  A.-
227s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
227s Ecolist (optimistic): Expcted entries per list: 9
227s Ecolist (optimistic): Minimum chunks per list: 4
227s Would take minimum 256.000000 bytes to make perfect hash.
227s Hashing 4.61 KB of sequence requires: 
227s  ~ linear (in seq length) hashing cost of 8.07 KB
227s  ~ linear (in seq length) expected anchor cost of 110.62 KB
227s Initial hash table uses: 256 bytes (4 bits, 16 entries)
227s Expected memory usage (without anchors): 8.32 KB
227s Expected memory usage (with anchors): 118.94 KB
227s Hash parameters computed in 0.135 seconds
227s Creating storage structures: 16 entries in 256 bytes space.
227s Storage structures created in: 0.000 seconds
227s 
227s Hashing NZ_GG705093.fna forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705093.fna backwards
227s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705093.gbk forwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Hashing NZ_GG705093.gbk backwards
227s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 90%.........
227s Initial hashing took: 0.003 seconds
227s Extracting anchors from hash-space.
227s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 31%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 68%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:08 2024
227s 93%.
227s Anchor extraction completed in: 0.003 seconds
227s Total anchors: 0
227s Anchor extraction + merge time: 0.003 seconds
227s Total processing time: 0.142 seconds
227s Writing anchors...
227s Total seeds used in anchors: 16
227s Hash performance:
227s  Keys used: 16 out of 16 possible (100.00%).
227s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
227s  Average pigeons per pigeon hole: 1
227s Writing 16 repeats...Output writing finished in: 0.001 seconds
227s Total time: 0.143 seconds
227s Murasaki finished!
227s PASSED MURASAKI
227s 
227s Testing Genepare on NZ_GG705093.fna
227s 181
227s PASSED GENEPARSE
227s 
227s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
227s Testing mbfa on NZ_GG705093.fna
227s PASSED mbfa
227s 
227s Test Murasaki on NZ_GG705094.fna
227s Verbosity level is: 0
227s Writing to: output/test
227s Pattern is: 101
227s Max usable hash bits: 27
227s Hit filter is: 0
227s Hash table type is: EcoHash
227s Hashing every: 1 base
227s Histogram detail is: 0
227s Hashing function is: 3
227s Collision profiling is: disabled
227s Repeats are: unmasked
227s Mergefilter is at: 100
227s Random seed: 1710447488 (automatic)
227s Bitscore output: on
227s Leave status records: no
227s Join neighbors is: off
227s Target memory is: 1.24 GB
227s Retain members is: true
227s Store repeatmap? yes
227s Reverse complement data is generated on the fly
227s Rifts allowed: 0
227s Fuzzy Extension: yes
227s Score by minimum pair: yes
227s Gapped anchors: no
227s Large sequence support is: enabled => seqpos is 8 bytes
227s Murasaki version 1.68.6 (LARGESEQ)
227s Loading NZ_GG705094.fna
227s Read 1153bp (1.13 KBp) in 0.000 seconds (3.4 MBp/s)
227s Done with forward strand (1153bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705094.fna loaded. 1.13 KB
227s Loading NZ_GG705094.gbk
227s Read 1153bp (1.13 KBp) in 0.000 seconds (4.4 MBp/s)
227s Done with forward strand (1153bp). Preparing reverse complement...
227s  <-> Reversing metdata.
227s Done.
227s Seq NZ_GG705094.gbk loaded. 1.13 KB
227s Sequence loading took: 0.001 seconds
227s Forward frequencies:  A:27.8404%  C:21.4224%  G:19.7745%  T:30.9627%
227s Global base frequencies:  A/T:58.8031%  C/G:41.1969%
227s Pat: 3 bases long with weight 2
227s    1 101 
227s Computing hash parameters...
227s Using 4 hashbits
227s  0%......... (T -0.124 seconds) ETA: Thu Mar 14 20:18:09 2024
227s 10%......... (T -0.110 seconds) ETA: Thu Mar 14 20:18:09 2024
227s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:09 2024
227s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.068 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 91%........
228s Acceptable hash function found after 1000 cycles.
228s Best uses 2/2 bases and has 0 empties from 2 inputs.
228s Score: 0.96875 (cf. worst: -4.51562)
228s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
228s Total correlation penalty: 0
228s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
228s                                             10
228s                                             ==
228s w[ 0]>>29:                                 -.C
228s w[ 0]>>30:                                  A.-
228s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
228s Ecolist (optimistic): Expcted entries per list: 9
228s Ecolist (optimistic): Minimum chunks per list: 4
228s Would take minimum 256.000000 bytes to make perfect hash.
228s Hashing 4.50 KB of sequence requires: 
228s  ~ linear (in seq length) hashing cost of 7.88 KB
228s  ~ linear (in seq length) expected anchor cost of 108.09 KB
228s Initial hash table uses: 256 bytes (4 bits, 16 entries)
228s Expected memory usage (without anchors): 8.12 KB
228s Expected memory usage (with anchors): 116.22 KB
228s Hash parameters computed in 0.136 seconds
228s Creating storage structures: 16 entries in 256 bytes space.
228s Storage structures created in: 0.000 seconds
228s 
228s Hashing NZ_GG705094.fna forwards
228s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%........
228s Hashing NZ_GG705094.fna backwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%........
228s Hashing NZ_GG705094.gbk forwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%........
228s Hashing NZ_GG705094.gbk backwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%........
228s Initial hashing took: 0.004 seconds
228s Extracting anchors from hash-space.
228s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
228s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 18%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 93%.
228s Anchor extraction completed in: 0.002 seconds
228s Total anchors: 0
228s Anchor extraction + merge time: 0.002 seconds
228s Total processing time: 0.144 seconds
228s Writing anchors...
228s Total seeds used in anchors: 16
228s Hash performance:
228s  Keys used: 16 out of 16 possible (100.00%).
228s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
228s  Average pigeons per pigeon hole: 1
228s Writing 16 repeats...Output writing finished in: 0.001 seconds
228s Total time: 0.145 seconds
228s Murasaki finished!
228s PASSED MURASAKI
228s 
228s Testing Genepare on NZ_GG705094.fna
228s 154
228s PASSED GENEPARSE
228s 
228s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
228s Testing mbfa on NZ_GG705094.fna
228s PASSED mbfa
228s 
228s Test Murasaki on NZ_GG705095.fna
228s Verbosity level is: 0
228s Writing to: output/test
228s Pattern is: 101
228s Max usable hash bits: 27
228s Hit filter is: 0
228s Hash table type is: EcoHash
228s Hashing every: 1 base
228s Histogram detail is: 0
228s Hashing function is: 3
228s Collision profiling is: disabled
228s Repeats are: unmasked
228s Mergefilter is at: 100
228s Random seed: 1710447489 (automatic)
228s Bitscore output: on
228s Leave status records: no
228s Join neighbors is: off
228s Target memory is: 1.24 GB
228s Retain members is: true
228s Store repeatmap? yes
228s Reverse complement data is generated on the fly
228s Rifts allowed: 0
228s Fuzzy Extension: yes
228s Score by minimum pair: yes
228s Gapped anchors: no
228s Large sequence support is: enabled => seqpos is 8 bytes
228s Murasaki version 1.68.6 (LARGESEQ)
228s Loading NZ_GG705095.fna
228s Read 1093bp (1.07 KBp) in 0.000 seconds (3.8 MBp/s)
228s Done with forward strand (1093bp). Preparing reverse complement...
228s  <-> Reversing metdata.
228s Done.
228s Seq NZ_GG705095.fna loaded. 1.07 KB
228s Loading NZ_GG705095.gbk
228s Read 1093bp (1.07 KBp) in 0.000 seconds (3.5 MBp/s)
228s Done with forward strand (1093bp). Preparing reverse complement...
228s  <-> Reversing metdata.
228s Done.
228s Seq NZ_GG705095.gbk loaded. 1.07 KB
228s Sequence loading took: 0.001 seconds
228s Forward frequencies:  A:33.1199%  C:16.8344%  G:21.043%  T:29.0027%
228s Global base frequencies:  A/T:62.1226%  C/G:37.8774%
228s Pat: 3 bases long with weight 2
228s    1 101 
228s Computing hash parameters...
228s Using 4 hashbits
228s  0%......... (T -0.133 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.112 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.096 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.068 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 91%........
228s Acceptable hash function found after 1000 cycles.
228s Best uses 2/2 bases and has 0 empties from 2 inputs.
228s Score: 0.96875 (cf. worst: -4.51562)
228s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
228s Total correlation penalty: 0
228s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
228s                                             10
228s                                             ==
228s w[ 0]>>29:                                 -.C
228s w[ 0]>>30:                                  A.-
228s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
228s Ecolist (optimistic): Expcted entries per list: 9
228s Ecolist (optimistic): Minimum chunks per list: 4
228s Would take minimum 256.000000 bytes to make perfect hash.
228s Hashing 4.27 KB of sequence requires: 
228s  ~ linear (in seq length) hashing cost of 7.46 KB
228s  ~ linear (in seq length) expected anchor cost of 102.47 KB
228s Initial hash table uses: 256 bytes (4 bits, 16 entries)
228s Expected memory usage (without anchors): 7.71 KB
228s Expected memory usage (with anchors): 110.18 KB
228s Hash parameters computed in 0.136 seconds
228s Creating storage structures: 16 entries in 256 bytes space.
228s Storage structures created in: 0.000 seconds
228s 
228s Hashing NZ_GG705095.fna forwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Hashing NZ_GG705095.fna backwards
228s  0%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Hashing NZ_GG705095.gbk forwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Hashing NZ_GG705095.gbk backwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Initial hashing took: 0.003 seconds
228s Extracting anchors from hash-space.
228s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
228s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 68%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 93%.
228s Anchor extraction completed in: 0.003 seconds
228s Total anchors: 0
228s Anchor extraction + merge time: 0.003 seconds
228s Total processing time: 0.143 seconds
228s Writing anchors...
228s Total seeds used in anchors: 16
228s Hash performance:
228s  Keys used: 16 out of 16 possible (100.00%).
228s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
228s  Average pigeons per pigeon hole: 1
228s Writing 16 repeats...Output writing finished in: 0.001 seconds
228s Total time: 0.144 seconds
228s Murasaki finished!
228s PASSED MURASAKI
228s 
228s Testing Genepare on NZ_GG705095.fna
228s 94
228s PASSED GENEPARSE
228s 
228s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
228s Testing mbfa on NZ_GG705095.fna
228s PASSED mbfa
228s 
228s Test Murasaki on NZ_GG705096.fna
228s Verbosity level is: 0
228s Writing to: output/test
228s Pattern is: 101
228s Max usable hash bits: 27
228s Hit filter is: 0
228s Hash table type is: EcoHash
228s Hashing every: 1 base
228s Histogram detail is: 0
228s Hashing function is: 3
228s Collision profiling is: disabled
228s Repeats are: unmasked
228s Mergefilter is at: 100
228s Random seed: 1710447489 (automatic)
228s Bitscore output: on
228s Leave status records: no
228s Join neighbors is: off
228s Target memory is: 1.24 GB
228s Retain members is: true
228s Store repeatmap? yes
228s Reverse complement data is generated on the fly
228s Rifts allowed: 0
228s Fuzzy Extension: yes
228s Score by minimum pair: yes
228s Gapped anchors: no
228s Large sequence support is: enabled => seqpos is 8 bytes
228s Murasaki version 1.68.6 (LARGESEQ)
228s Loading NZ_GG705096.fna
228s Read 1046bp (1.02 KBp) in 0.000 seconds (3.8 MBp/s)
228s Done with forward strand (1046bp). Preparing reverse complement...
228s  <-> Reversing metdata.
228s Done.
228s Seq NZ_GG705096.fna loaded. 1.02 KB
228s Loading NZ_GG705096.gbk
228s Read 1046bp (1.02 KBp) in 0.000 seconds (4.2 MBp/s)
228s Done with forward strand (1046bp). Preparing reverse complement...
228s  <-> Reversing metdata.
228s Done.
228s Seq NZ_GG705096.gbk loaded. 1.02 KB
228s Sequence loading took: 0.001 seconds
228s Forward frequencies:  A:30.8795%  C:24.4742%  G:20.9369%  T:23.7094%
228s Global base frequencies:  A/T:54.5889%  C/G:45.4111%
228s Pat: 3 bases long with weight 2
228s    1 101 
228s Computing hash parameters...
228s Using 4 hashbits
228s  0%......... (T -0.125 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.110 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 91%........
228s Acceptable hash function found after 1000 cycles.
228s Best uses 2/2 bases and has 0 empties from 2 inputs.
228s Score: 0.96875 (cf. worst: -4.51562)
228s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
228s Total correlation penalty: 0
228s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
228s                                             10
228s                                             ==
228s w[ 0]>>29:                                 -.C
228s w[ 0]>>30:                                  A.-
228s Ecolist (optimistic): (seqbits: 2 idxbits: 12 minBlocks: 1 initblocks: 1)
228s Ecolist (optimistic): Expcted entries per list: 9
228s Ecolist (optimistic): Minimum chunks per list: 4
228s Would take minimum 256.000000 bytes to make perfect hash.
228s Hashing 4.09 KB of sequence requires: 
228s  ~ linear (in seq length) hashing cost of 7.15 KB
228s  ~ linear (in seq length) expected anchor cost of 98.06 KB
228s Initial hash table uses: 256 bytes (4 bits, 16 entries)
228s Expected memory usage (without anchors): 7.40 KB
228s Expected memory usage (with anchors): 105.46 KB
228s Hash parameters computed in 0.133 seconds
228s Creating storage structures: 16 entries in 256 bytes space.
228s Storage structures created in: 0.000 seconds
228s 
228s Hashing NZ_GG705096.fna forwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%........
228s Hashing NZ_GG705096.fna backwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%........
228s Hashing NZ_GG705096.gbk forwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%........
228s Hashing NZ_GG705096.gbk backwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%........
228s Initial hashing took: 0.005 seconds
228s Extracting anchors from hash-space.
228s  (T -0.003 seconds) ETA: Thu Mar 14 20:18:09 2024
228s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 93%.
228s Anchor extraction completed in: 0.002 seconds
228s Total anchors: 0
228s Anchor extraction + merge time: 0.002 seconds
228s Total processing time: 0.141 seconds
228s Writing anchors...
228s Total seeds used in anchors: 16
228s Hash performance:
228s  Keys used: 16 out of 16 possible (100.00%).
228s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
228s  Average pigeons per pigeon hole: 1
228s Writing 16 repeats...Output writing finished in: 0.001 seconds
228s Total time: 0.142 seconds
228s Murasaki finished!
228s PASSED MURASAKI
228s 
228s Testing Genepare on NZ_GG705096.fna
228s 47
228s PASSED GENEPARSE
228s 
228s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
228s Testing mbfa on NZ_GG705096.fna
228s PASSED mbfa
228s 
228s Test Murasaki on NZ_GG705097.fna
228s Verbosity level is: 0
228s Writing to: output/test
228s Pattern is: 101
228s Max usable hash bits: 27
228s Hit filter is: 0
228s Hash table type is: EcoHash
228s Hashing every: 1 base
228s Histogram detail is: 0
228s Hashing function is: 3
228s Collision profiling is: disabled
228s Repeats are: unmasked
228s Mergefilter is at: 100
228s Random seed: 1710447489 (automatic)
228s Bitscore output: on
228s Leave status records: no
228s Join neighbors is: off
228s Target memory is: 1.24 GB
228s Retain members is: true
228s Store repeatmap? yes
228s Reverse complement data is generated on the fly
228s Rifts allowed: 0
228s Fuzzy Extension: yes
228s Score by minimum pair: yes
228s Gapped anchors: no
228s Large sequence support is: enabled => seqpos is 8 bytes
228s Murasaki version 1.68.6 (LARGESEQ)
228s Loading NZ_GG705097.fna
228s Read 976bp (976 bytesp) in 0.000 seconds (3.5 MBp/s)
228s Done with forward strand (976bp). Preparing reverse complement...
228s  <-> Reversing metdata.
228s Done.
228s Seq NZ_GG705097.fna loaded. 976 bytes
228s Loading NZ_GG705097.gbk
228s Read 976bp (976 bytesp) in 0.000 seconds (3.3 MBp/s)
228s Done with forward strand (976bp). Preparing reverse complement...
228s  <-> Reversing metdata.
228s Done.
228s Seq NZ_GG705097.gbk loaded. 976 bytes
228s Sequence loading took: 0.001 seconds
228s Forward frequencies:  A:33.5041%  C:17.5205%  G:17.8279%  T:31.1475%
228s Global base frequencies:  A/T:64.6516%  C/G:35.3484%
228s Pat: 3 bases long with weight 2
228s    1 101 
228s Computing hash parameters...
228s Using 4 hashbits
228s  0%......... (T -0.130 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.111 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 91%........
228s Acceptable hash function found after 1000 cycles.
228s Best uses 2/2 bases and has 0 empties from 2 inputs.
228s Score: 0.96875 (cf. worst: -4.51562)
228s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
228s Total correlation penalty: 0
228s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
228s                                             10
228s                                             ==
228s w[ 0]>>29:                                 -.C
228s w[ 0]>>30:                                  A.-
228s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
228s Ecolist (optimistic): Expcted entries per list: 8
228s Ecolist (optimistic): Minimum chunks per list: 4
228s Would take minimum 256.000000 bytes to make perfect hash.
228s Hashing 3.81 KB of sequence requires: 
228s  ~ linear (in seq length) hashing cost of 6.20 KB
228s  ~ linear (in seq length) expected anchor cost of 91.50 KB
228s Initial hash table uses: 256 bytes (4 bits, 16 entries)
228s Expected memory usage (without anchors): 6.45 KB
228s Expected memory usage (with anchors): 97.95 KB
228s Hash parameters computed in 0.134 seconds
228s Creating storage structures: 16 entries in 256 bytes space.
228s Storage structures created in: 0.000 seconds
228s 
228s Hashing NZ_GG705097.fna forwards
228s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Hashing NZ_GG705097.fna backwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Hashing NZ_GG705097.gbk forwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Hashing NZ_GG705097.gbk backwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Initial hashing took: 0.006 seconds
228s Extracting anchors from hash-space.
228s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
228s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 93%.
228s Anchor extraction completed in: 0.002 seconds
228s Total anchors: 0
228s Anchor extraction + merge time: 0.002 seconds
228s Total processing time: 0.143 seconds
228s Writing anchors...
228s Total seeds used in anchors: 16
228s Hash performance:
228s  Keys used: 16 out of 16 possible (100.00%).
228s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
228s  Average pigeons per pigeon hole: 1
228s Writing 16 repeats...Output writing finished in: 0.001 seconds
228s Total time: 0.144 seconds
228s Murasaki finished!
228s PASSED MURASAKI
228s 
228s Testing Genepare on NZ_GG705097.fna
228s 18446744073709551593
228s PASSED GENEPARSE
228s 
228s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
228s Testing mbfa on NZ_GG705097.fna
228s PASSED mbfa
228s 
228s Test Murasaki on NZ_GG705098.fna
228s Verbosity level is: 0
228s Writing to: output/test
228s Pattern is: 101
228s Max usable hash bits: 27
228s Hit filter is: 0
228s Hash table type is: EcoHash
228s Hashing every: 1 base
228s Histogram detail is: 0
228s Hashing function is: 3
228s Collision profiling is: disabled
228s Repeats are: unmasked
228s Mergefilter is at: 100
228s Random seed: 1710447489 (automatic)
228s Bitscore output: on
228s Leave status records: no
228s Join neighbors is: off
228s Target memory is: 1.24 GB
228s Retain members is: true
228s Store repeatmap? yes
228s Reverse complement data is generated on the fly
228s Rifts allowed: 0
228s Fuzzy Extension: yes
228s Score by minimum pair: yes
228s Gapped anchors: no
228s Large sequence support is: enabled => seqpos is 8 bytes
228s Murasaki version 1.68.6 (LARGESEQ)
228s Loading NZ_GG705098.fna
228s Read 959bp (959 bytesp) in 0.000 seconds (2.4 MBp/s)
228s Done with forward strand (959bp). Preparing reverse complement...
228s  <-> Reversing metdata.
228s Done.
228s Seq NZ_GG705098.fna loaded. 959 bytes
228s Loading NZ_GG705098.gbk
228s Read 959bp (959 bytesp) in 0.000 seconds (2.3 MBp/s)
228s Done with forward strand (959bp). Preparing reverse complement...
228s  <-> Reversing metdata.
228s Done.
228s Seq NZ_GG705098.gbk loaded. 959 bytes
228s Sequence loading took: 0.001 seconds
228s Forward frequencies:  A:33.0553%  C:20.6465%  G:17.414%  T:28.8843%
228s Global base frequencies:  A/T:61.9395%  C/G:38.0605%
228s Pat: 3 bases long with weight 2
228s    1 101 
228s Computing hash parameters...
228s Using 4 hashbits
228s  0%......... (T -0.124 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.112 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.096 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 91%........
228s Acceptable hash function found after 1000 cycles.
228s Best uses 2/2 bases and has 0 empties from 2 inputs.
228s Score: 0.96875 (cf. worst: -4.51562)
228s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
228s Total correlation penalty: 0
228s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
228s                                             10
228s                                             ==
228s w[ 0]>>29:                                 -.C
228s w[ 0]>>30:                                  A.-
228s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
228s Ecolist (optimistic): Expcted entries per list: 8
228s Ecolist (optimistic): Minimum chunks per list: 4
228s Would take minimum 256.000000 bytes to make perfect hash.
228s Hashing 3.75 KB of sequence requires: 
228s  ~ linear (in seq length) hashing cost of 6.08 KB
228s  ~ linear (in seq length) expected anchor cost of 89.91 KB
228s Initial hash table uses: 256 bytes (4 bits, 16 entries)
228s Expected memory usage (without anchors): 6.33 KB
228s Expected memory usage (with anchors): 96.24 KB
228s Hash parameters computed in 0.135 seconds
228s Creating storage structures: 16 entries in 256 bytes space.
228s Storage structures created in: 0.000 seconds
228s 
228s Hashing NZ_GG705098.fna forwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Hashing NZ_GG705098.fna backwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Hashing NZ_GG705098.gbk forwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Hashing NZ_GG705098.gbk backwards
228s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 90%.........
228s Initial hashing took: 0.002 seconds
228s Extracting anchors from hash-space.
228s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 68%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 93%.
228s Anchor extraction completed in: 0.003 seconds
228s Total anchors: 0
228s Anchor extraction + merge time: 0.003 seconds
228s Total processing time: 0.142 seconds
228s Writing anchors...
228s Total seeds used in anchors: 16
228s Hash performance:
228s  Keys used: 16 out of 16 possible (100.00%).
228s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
228s  Average pigeons per pigeon hole: 1
228s Writing 16 repeats...Output writing finished in: 0.001 seconds
228s Total time: 0.143 seconds
228s Murasaki finished!
228s PASSED MURASAKI
228s 
228s Testing Genepare on NZ_GG705098.fna
228s 18446744073709551576
228s PASSED GENEPARSE
228s 
228s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
228s Testing mbfa on NZ_GG705098.fna
228s PASSED mbfa
228s 
228s Test Murasaki on NZ_GG705099.fna
228s Verbosity level is: 0
228s Writing to: output/test
228s Pattern is: 101
228s Max usable hash bits: 27
228s Hit filter is: 0
228s Hash table type is: EcoHash
228s Hashing every: 1 base
228s Histogram detail is: 0
228s Hashing function is: 3
228s Collision profiling is: disabled
228s Repeats are: unmasked
228s Mergefilter is at: 100
228s Random seed: 1710447489 (automatic)
228s Bitscore output: on
228s Leave status records: no
228s Join neighbors is: off
228s Target memory is: 1.24 GB
228s Retain members is: true
228s Store repeatmap? yes
228s Reverse complement data is generated on the fly
228s Rifts allowed: 0
228s Fuzzy Extension: yes
228s Score by minimum pair: yes
228s Gapped anchors: no
228s Large sequence support is: enabled => seqpos is 8 bytes
228s Murasaki version 1.68.6 (LARGESEQ)
228s Loading NZ_GG705099.fna
228s Read 927bp (927 bytesp) in 0.000 seconds (3.4 MBp/s)
228s Done with forward strand (927bp). Preparing reverse complement...
228s  <-> Reversing metdata.
228s Done.
228s Seq NZ_GG705099.fna loaded. 927 bytes
228s Loading NZ_GG705099.gbk
228s Read 927bp (927 bytesp) in 0.000 seconds (3.8 MBp/s)
228s Done with forward strand (927bp). Preparing reverse complement...
228s  <-> Reversing metdata.
228s Done.
228s Seq NZ_GG705099.gbk loaded. 927 bytes
228s Sequence loading took: 0.001 seconds
228s Forward frequencies:  A:32.2546%  C:16.5049%  G:12.6214%  T:38.6192%
228s Global base frequencies:  A/T:70.8738%  C/G:29.1262%
228s Pat: 3 bases long with weight 2
228s    1 101 
228s Computing hash parameters...
228s Using 4 hashbits
228s  0%......... (T -0.129 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 10%......... (T -0.113 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 20%......... (T -0.097 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 30%......... (T -0.082 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 40%......... (T -0.068 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:09 2024
228s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 91%........
229s Acceptable hash function found after 1000 cycles.
229s Best uses 2/2 bases and has 0 empties from 2 inputs.
229s Score: 0.96875 (cf. worst: -4.51562)
229s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
229s Total correlation penalty: 0
229s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
229s                                             10
229s                                             ==
229s w[ 0]>>29:                                 -.C
229s w[ 0]>>30:                                  A.-
229s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
229s Ecolist (optimistic): Expcted entries per list: 8
229s Ecolist (optimistic): Minimum chunks per list: 4
229s Would take minimum 256.000000 bytes to make perfect hash.
229s Hashing 3.62 KB of sequence requires: 
229s  ~ linear (in seq length) hashing cost of 5.88 KB
229s  ~ linear (in seq length) expected anchor cost of 86.91 KB
229s Initial hash table uses: 256 bytes (4 bits, 16 entries)
229s Expected memory usage (without anchors): 6.13 KB
229s Expected memory usage (with anchors): 93.03 KB
229s Hash parameters computed in 0.135 seconds
229s Creating storage structures: 16 entries in 256 bytes space.
229s Storage structures created in: 0.000 seconds
229s 
229s Hashing NZ_GG705099.fna forwards
229s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 90%........
229s Hashing NZ_GG705099.fna backwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 90%........
229s Hashing NZ_GG705099.gbk forwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 90%........
229s Hashing NZ_GG705099.gbk backwards
229s  0%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 90%........
229s Initial hashing took: 0.005 seconds
229s Extracting anchors from hash-space.
229s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:09 2024
229s 93%.
229s Anchor extraction completed in: 0.002 seconds
229s Total anchors: 0
229s Anchor extraction + merge time: 0.002 seconds
229s Total processing time: 0.143 seconds
229s Writing anchors...
229s Total seeds used in anchors: 16
229s Hash performance:
229s  Keys used: 16 out of 16 possible (100.00%).
229s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
229s  Average pigeons per pigeon hole: 1
229s Writing 16 repeats...Output writing finished in: 0.001 seconds
229s Total time: 0.144 seconds
229s Murasaki finished!
229s PASSED MURASAKI
229s 
229s Testing Genepare on NZ_GG705099.fna
229s 18446744073709551544
229s PASSED GENEPARSE
229s 
229s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
229s Testing mbfa on NZ_GG705099.fna
229s PASSED mbfa
229s 
229s Test Murasaki on NZ_GG705100.fna
229s Verbosity level is: 0
229s Writing to: output/test
229s Pattern is: 101
229s Max usable hash bits: 27
229s Hit filter is: 0
229s Hash table type is: EcoHash
229s Hashing every: 1 base
229s Histogram detail is: 0
229s Hashing function is: 3
229s Collision profiling is: disabled
229s Repeats are: unmasked
229s Mergefilter is at: 100
229s Random seed: 1710447490 (automatic)
229s Bitscore output: on
229s Leave status records: no
229s Join neighbors is: off
229s Target memory is: 1.24 GB
229s Retain members is: true
229s Store repeatmap? yes
229s Reverse complement data is generated on the fly
229s Rifts allowed: 0
229s Fuzzy Extension: yes
229s Score by minimum pair: yes
229s Gapped anchors: no
229s Large sequence support is: enabled => seqpos is 8 bytes
229s Murasaki version 1.68.6 (LARGESEQ)
229s Loading NZ_GG705100.fna
229s Read 885bp (885 bytesp) in 0.000 seconds (3.3 MBp/s)
229s Done with forward strand (885bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705100.fna loaded. 885 bytes
229s Loading NZ_GG705100.gbk
229s Read 885bp (885 bytesp) in 0.000 seconds (3.6 MBp/s)
229s Done with forward strand (885bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705100.gbk loaded. 885 bytes
229s Sequence loading took: 0.001 seconds
229s Forward frequencies:  A:26.6667%  C:18.9831%  G:15.5932%  T:38.7571%
229s Global base frequencies:  A/T:65.4237%  C/G:34.5763%
229s Pat: 3 bases long with weight 2
229s    1 101 
229s Computing hash parameters...
229s Using 4 hashbits
229s  0%......... (T -0.126 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.110 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%........
229s Acceptable hash function found after 1000 cycles.
229s Best uses 2/2 bases and has 0 empties from 2 inputs.
229s Score: 0.96875 (cf. worst: -4.51562)
229s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
229s Total correlation penalty: 0
229s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
229s                                             10
229s                                             ==
229s w[ 0]>>29:                                 -.C
229s w[ 0]>>30:                                  A.-
229s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
229s Ecolist (optimistic): Expcted entries per list: 8
229s Ecolist (optimistic): Minimum chunks per list: 4
229s Would take minimum 256.000000 bytes to make perfect hash.
229s Hashing 3.46 KB of sequence requires: 
229s  ~ linear (in seq length) hashing cost of 5.61 KB
229s  ~ linear (in seq length) expected anchor cost of 82.97 KB
229s Initial hash table uses: 256 bytes (4 bits, 16 entries)
229s Expected memory usage (without anchors): 5.86 KB
229s Expected memory usage (with anchors): 88.83 KB
229s Hash parameters computed in 0.133 seconds
229s Creating storage structures: 16 entries in 256 bytes space.
229s Storage structures created in: 0.000 seconds
229s 
229s Hashing NZ_GG705100.fna forwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Hashing NZ_GG705100.fna backwards
229s  0%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Hashing NZ_GG705100.gbk forwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Hashing NZ_GG705100.gbk backwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Initial hashing took: 0.003 seconds
229s Extracting anchors from hash-space.
229s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 93%.
229s Anchor extraction completed in: 0.002 seconds
229s Total anchors: 0
229s Anchor extraction + merge time: 0.002 seconds
229s Total processing time: 0.138 seconds
229s Writing anchors...
229s Total seeds used in anchors: 16
229s Hash performance:
229s  Keys used: 16 out of 16 possible (100.00%).
229s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
229s  Average pigeons per pigeon hole: 1
229s Writing 16 repeats...Output writing finished in: 0.001 seconds
229s Total time: 0.139 seconds
229s Murasaki finished!
229s PASSED MURASAKI
229s 
229s Testing Genepare on NZ_GG705100.fna
229s 18446744073709551502
229s PASSED GENEPARSE
229s 
229s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
229s Testing mbfa on NZ_GG705100.fna
229s PASSED mbfa
229s 
229s Test Murasaki on NZ_GG705101.fna
229s Verbosity level is: 0
229s Writing to: output/test
229s Pattern is: 101
229s Max usable hash bits: 27
229s Hit filter is: 0
229s Hash table type is: EcoHash
229s Hashing every: 1 base
229s Histogram detail is: 0
229s Hashing function is: 3
229s Collision profiling is: disabled
229s Repeats are: unmasked
229s Mergefilter is at: 100
229s Random seed: 1710447490 (automatic)
229s Bitscore output: on
229s Leave status records: no
229s Join neighbors is: off
229s Target memory is: 1.24 GB
229s Retain members is: true
229s Store repeatmap? yes
229s Reverse complement data is generated on the fly
229s Rifts allowed: 0
229s Fuzzy Extension: yes
229s Score by minimum pair: yes
229s Gapped anchors: no
229s Large sequence support is: enabled => seqpos is 8 bytes
229s Murasaki version 1.68.6 (LARGESEQ)
229s Loading NZ_GG705101.fna
229s Read 832bp (832 bytesp) in 0.000 seconds (3.1 MBp/s)
229s Done with forward strand (832bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705101.fna loaded. 832 bytes
229s Loading NZ_GG705101.gbk
229s Read 832bp (832 bytesp) in 0.000 seconds (3.4 MBp/s)
229s Done with forward strand (832bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705101.gbk loaded. 832 bytes
229s Sequence loading took: 0.001 seconds
229s Forward frequencies:  A:33.6538%  C:15.9856%  G:18.149%  T:32.2115%
229s Global base frequencies:  A/T:65.8654%  C/G:34.1346%
229s Pat: 3 bases long with weight 2
229s    1 101 
229s Computing hash parameters...
229s Using 4 hashbits
229s  0%......... (T -0.122 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%........
229s Acceptable hash function found after 1000 cycles.
229s Best uses 2/2 bases and has 0 empties from 2 inputs.
229s Score: 0.96875 (cf. worst: -4.51562)
229s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
229s Total correlation penalty: 0
229s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
229s                                             10
229s                                             ==
229s w[ 0]>>29:                                 -.C
229s w[ 0]>>30:                                  A.-
229s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
229s Ecolist (optimistic): Expcted entries per list: 8
229s Ecolist (optimistic): Minimum chunks per list: 4
229s Would take minimum 256.000000 bytes to make perfect hash.
229s Hashing 3.25 KB of sequence requires: 
229s  ~ linear (in seq length) hashing cost of 5.28 KB
229s  ~ linear (in seq length) expected anchor cost of 78.00 KB
229s Initial hash table uses: 256 bytes (4 bits, 16 entries)
229s Expected memory usage (without anchors): 5.53 KB
229s Expected memory usage (with anchors): 83.53 KB
229s Hash parameters computed in 0.133 seconds
229s Creating storage structures: 16 entries in 256 bytes space.
229s Storage structures created in: 0.000 seconds
229s 
229s Hashing NZ_GG705101.fna forwards
229s  0%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%........
229s Hashing NZ_GG705101.fna backwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%........
229s Hashing NZ_GG705101.gbk forwards
229s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%........
229s Hashing NZ_GG705101.gbk backwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%........
229s Initial hashing took: 0.004 seconds
229s Extracting anchors from hash-space.
229s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 93%.
229s Anchor extraction completed in: 0.002 seconds
229s Total anchors: 0
229s Anchor extraction + merge time: 0.002 seconds
229s Total processing time: 0.140 seconds
229s Writing anchors...
229s Total seeds used in anchors: 16
229s Hash performance:
229s  Keys used: 16 out of 16 possible (100.00%).
229s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
229s  Average pigeons per pigeon hole: 1
229s Writing 16 repeats...Output writing finished in: 0.001 seconds
229s Total time: 0.141 seconds
229s Murasaki finished!
229s PASSED MURASAKI
229s 
229s Testing Genepare on NZ_GG705101.fna
229s 18446744073709551449
229s PASSED GENEPARSE
229s 
229s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
229s Testing mbfa on NZ_GG705101.fna
229s PASSED mbfa
229s 
229s Test Murasaki on NZ_GG705102.fna
229s Verbosity level is: 0
229s Writing to: output/test
229s Pattern is: 101
229s Max usable hash bits: 27
229s Hit filter is: 0
229s Hash table type is: EcoHash
229s Hashing every: 1 base
229s Histogram detail is: 0
229s Hashing function is: 3
229s Collision profiling is: disabled
229s Repeats are: unmasked
229s Mergefilter is at: 100
229s Random seed: 1710447490 (automatic)
229s Bitscore output: on
229s Leave status records: no
229s Join neighbors is: off
229s Target memory is: 1.24 GB
229s Retain members is: true
229s Store repeatmap? yes
229s Reverse complement data is generated on the fly
229s Rifts allowed: 0
229s Fuzzy Extension: yes
229s Score by minimum pair: yes
229s Gapped anchors: no
229s Large sequence support is: enabled => seqpos is 8 bytes
229s Murasaki version 1.68.6 (LARGESEQ)
229s Loading NZ_GG705102.fna
229s Read 828bp (828 bytesp) in 0.000 seconds (2.2 MBp/s)
229s Done with forward strand (828bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705102.fna loaded. 828 bytes
229s Loading NZ_GG705102.gbk
229s Read 828bp (828 bytesp) in 0.001 seconds (1.3 MBp/s)
229s Done with forward strand (828bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705102.gbk loaded. 828 bytes
229s Sequence loading took: 0.001 seconds
229s Forward frequencies:  A:29.8309%  C:22.4638%  G:25%  T:22.7053%
229s Global base frequencies:  A/T:52.5362%  C/G:47.4638%
229s Pat: 3 bases long with weight 2
229s    1 101 
229s Computing hash parameters...
229s Using 4 hashbits
229s  0%......... (T -0.119 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%........
229s Acceptable hash function found after 1000 cycles.
229s Best uses 2/2 bases and has 0 empties from 2 inputs.
229s Score: 0.96875 (cf. worst: -4.51562)
229s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
229s Total correlation penalty: 0
229s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
229s                                             10
229s                                             ==
229s w[ 0]>>29:                                 -.C
229s w[ 0]>>30:                                  A.-
229s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
229s Ecolist (optimistic): Expcted entries per list: 8
229s Ecolist (optimistic): Minimum chunks per list: 4
229s Would take minimum 256.000000 bytes to make perfect hash.
229s Hashing 3.23 KB of sequence requires: 
229s  ~ linear (in seq length) hashing cost of 5.26 KB
229s  ~ linear (in seq length) expected anchor cost of 77.62 KB
229s Initial hash table uses: 256 bytes (4 bits, 16 entries)
229s Expected memory usage (without anchors): 5.51 KB
229s Expected memory usage (with anchors): 83.13 KB
229s Hash parameters computed in 0.133 seconds
229s Creating storage structures: 16 entries in 256 bytes space.
229s Storage structures created in: 0.000 seconds
229s 
229s Hashing NZ_GG705102.fna forwards
229s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Hashing NZ_GG705102.fna backwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Hashing NZ_GG705102.gbk forwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Hashing NZ_GG705102.gbk backwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Initial hashing took: 0.004 seconds
229s Extracting anchors from hash-space.
229s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 93%.
229s Anchor extraction completed in: 0.002 seconds
229s Total anchors: 0
229s Anchor extraction + merge time: 0.002 seconds
229s Total processing time: 0.140 seconds
229s Writing anchors...
229s Total seeds used in anchors: 16
229s Hash performance:
229s  Keys used: 16 out of 16 possible (100.00%).
229s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
229s  Average pigeons per pigeon hole: 1
229s Writing 16 repeats...Output writing finished in: 0.001 seconds
229s Total time: 0.141 seconds
229s Murasaki finished!
229s PASSED MURASAKI
229s 
229s Testing Genepare on NZ_GG705102.fna
229s 18446744073709551445
229s PASSED GENEPARSE
229s 
229s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
229s Testing mbfa on NZ_GG705102.fna
229s PASSED mbfa
229s 
229s Test Murasaki on NZ_GG705103.fna
229s Verbosity level is: 0
229s Writing to: output/test
229s Pattern is: 101
229s Max usable hash bits: 27
229s Hit filter is: 0
229s Hash table type is: EcoHash
229s Hashing every: 1 base
229s Histogram detail is: 0
229s Hashing function is: 3
229s Collision profiling is: disabled
229s Repeats are: unmasked
229s Mergefilter is at: 100
229s Random seed: 1710447490 (automatic)
229s Bitscore output: on
229s Leave status records: no
229s Join neighbors is: off
229s Target memory is: 1.24 GB
229s Retain members is: true
229s Store repeatmap? yes
229s Reverse complement data is generated on the fly
229s Rifts allowed: 0
229s Fuzzy Extension: yes
229s Score by minimum pair: yes
229s Gapped anchors: no
229s Large sequence support is: enabled => seqpos is 8 bytes
229s Murasaki version 1.68.6 (LARGESEQ)
229s Loading NZ_GG705103.fna
229s Read 828bp (828 bytesp) in 0.000 seconds (2.1 MBp/s)
229s Done with forward strand (828bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705103.fna loaded. 828 bytes
229s Loading NZ_GG705103.gbk
229s Read 828bp (828 bytesp) in 0.000 seconds (2.8 MBp/s)
229s Done with forward strand (828bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705103.gbk loaded. 828 bytes
229s Sequence loading took: 0.001 seconds
229s Forward frequencies:  A:31.1594%  C:20.6522%  G:22.2222%  T:25.9662%
229s Global base frequencies:  A/T:57.1256%  C/G:42.8744%
229s Pat: 3 bases long with weight 2
229s    1 101 
229s Computing hash parameters...
229s Using 4 hashbits
229s  0%......... (T -0.124 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%........
229s Acceptable hash function found after 1000 cycles.
229s Best uses 2/2 bases and has 0 empties from 2 inputs.
229s Score: 0.96875 (cf. worst: -4.51562)
229s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
229s Total correlation penalty: 0
229s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
229s                                             10
229s                                             ==
229s w[ 0]>>29:                                 -.C
229s w[ 0]>>30:                                  A.-
229s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
229s Ecolist (optimistic): Expcted entries per list: 8
229s Ecolist (optimistic): Minimum chunks per list: 4
229s Would take minimum 256.000000 bytes to make perfect hash.
229s Hashing 3.23 KB of sequence requires: 
229s  ~ linear (in seq length) hashing cost of 5.26 KB
229s  ~ linear (in seq length) expected anchor cost of 77.62 KB
229s Initial hash table uses: 256 bytes (4 bits, 16 entries)
229s Expected memory usage (without anchors): 5.51 KB
229s Expected memory usage (with anchors): 83.13 KB
229s Hash parameters computed in 0.135 seconds
229s Creating storage structures: 16 entries in 256 bytes space.
229s Storage structures created in: 0.000 seconds
229s 
229s Hashing NZ_GG705103.fna forwards
229s  0%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Hashing NZ_GG705103.fna backwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Hashing NZ_GG705103.gbk forwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Hashing NZ_GG705103.gbk backwards
229s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 90%........
229s Initial hashing took: 0.003 seconds
229s Extracting anchors from hash-space.
229s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 93%.
229s Anchor extraction completed in: 0.002 seconds
229s Total anchors: 0
229s Anchor extraction + merge time: 0.002 seconds
229s Total processing time: 0.142 seconds
229s Writing anchors...
229s Total seeds used in anchors: 16
229s Hash performance:
229s  Keys used: 16 out of 16 possible (100.00%).
229s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
229s  Average pigeons per pigeon hole: 1
229s Writing 16 repeats...Output writing finished in: 0.002 seconds
229s Total time: 0.143 seconds
229s Murasaki finished!
229s PASSED MURASAKI
229s 
229s Testing Genepare on NZ_GG705103.fna
229s 18446744073709551445
229s PASSED GENEPARSE
229s 
229s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
229s Testing mbfa on NZ_GG705103.fna
229s PASSED mbfa
229s 
229s Test Murasaki on NZ_GG705104.fna
229s Verbosity level is: 0
229s Writing to: output/test
229s Pattern is: 101
229s Max usable hash bits: 27
229s Hit filter is: 0
229s Hash table type is: EcoHash
229s Hashing every: 1 base
229s Histogram detail is: 0
229s Hashing function is: 3
229s Collision profiling is: disabled
229s Repeats are: unmasked
229s Mergefilter is at: 100
229s Random seed: 1710447490 (automatic)
229s Bitscore output: on
229s Leave status records: no
229s Join neighbors is: off
229s Target memory is: 1.24 GB
229s Retain members is: true
229s Store repeatmap? yes
229s Reverse complement data is generated on the fly
229s Rifts allowed: 0
229s Fuzzy Extension: yes
229s Score by minimum pair: yes
229s Gapped anchors: no
229s Large sequence support is: enabled => seqpos is 8 bytes
229s Murasaki version 1.68.6 (LARGESEQ)
229s Loading NZ_GG705104.fna
229s Read 821bp (821 bytesp) in 0.000 seconds (3.1 MBp/s)
229s Done with forward strand (821bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705104.fna loaded. 821 bytes
229s Loading NZ_GG705104.gbk
229s Read 821bp (821 bytesp) in 0.000 seconds (3.4 MBp/s)
229s Done with forward strand (821bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705104.gbk loaded. 821 bytes
229s Sequence loading took: 0.001 seconds
229s Forward frequencies:  A:28.5018%  C:21.6809%  G:23.1425%  T:26.6748%
229s Global base frequencies:  A/T:55.1766%  C/G:44.8234%
229s Pat: 3 bases long with weight 2
229s    1 101 
229s Computing hash parameters...
229s Using 4 hashbits
229s  0%......... (T -0.120 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%........
229s Acceptable hash function found after 1000 cycles.
229s Best uses 2/2 bases and has 0 empties from 2 inputs.
229s Score: 0.96875 (cf. worst: -4.51562)
229s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
229s Total correlation penalty: 0
229s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
229s                                             10
229s                                             ==
229s w[ 0]>>29:                                 -.C
229s w[ 0]>>30:                                  A.-
229s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
229s Ecolist (optimistic): Expcted entries per list: 8
229s Ecolist (optimistic): Minimum chunks per list: 4
229s Would take minimum 256.000000 bytes to make perfect hash.
229s Hashing 3.21 KB of sequence requires: 
229s  ~ linear (in seq length) hashing cost of 5.21 KB
229s  ~ linear (in seq length) expected anchor cost of 76.97 KB
229s Initial hash table uses: 256 bytes (4 bits, 16 entries)
229s Expected memory usage (without anchors): 5.46 KB
229s Expected memory usage (with anchors): 82.42 KB
229s Hash parameters computed in 0.132 seconds
229s Creating storage structures: 16 entries in 256 bytes space.
229s Storage structures created in: 0.000 seconds
229s 
229s Hashing NZ_GG705104.fna forwards
229s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%.......
229s Hashing NZ_GG705104.fna backwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%.......
229s Hashing NZ_GG705104.gbk forwards
229s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%.......
229s Hashing NZ_GG705104.gbk backwards
229s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 91%.......
229s Initial hashing took: 0.004 seconds
229s Extracting anchors from hash-space.
229s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:10 2024
229s 93%.
229s Anchor extraction completed in: 0.002 seconds
229s Total anchors: 0
229s Anchor extraction + merge time: 0.002 seconds
229s Total processing time: 0.139 seconds
229s Writing anchors...
229s Total seeds used in anchors: 16
229s Hash performance:
229s  Keys used: 16 out of 16 possible (100.00%).
229s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
229s  Average pigeons per pigeon hole: 1
229s Writing 16 repeats...Output writing finished in: 0.001 seconds
229s Total time: 0.140 seconds
229s Murasaki finished!
229s PASSED MURASAKI
229s 
229s Testing Genepare on NZ_GG705104.fna
229s 18446744073709551438
229s PASSED GENEPARSE
229s 
229s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
229s Testing mbfa on NZ_GG705104.fna
229s PASSED mbfa
229s 
229s Test Murasaki on NZ_GG705105.fna
229s Verbosity level is: 0
229s Writing to: output/test
229s Pattern is: 101
229s Max usable hash bits: 27
229s Hit filter is: 0
229s Hash table type is: EcoHash
229s Hashing every: 1 base
229s Histogram detail is: 0
229s Hashing function is: 3
229s Collision profiling is: disabled
229s Repeats are: unmasked
229s Mergefilter is at: 100
229s Random seed: 1710447490 (automatic)
229s Bitscore output: on
229s Leave status records: no
229s Join neighbors is: off
229s Target memory is: 1.24 GB
229s Retain members is: true
229s Store repeatmap? yes
229s Reverse complement data is generated on the fly
229s Rifts allowed: 0
229s Fuzzy Extension: yes
229s Score by minimum pair: yes
229s Gapped anchors: no
229s Large sequence support is: enabled => seqpos is 8 bytes
229s Murasaki version 1.68.6 (LARGESEQ)
229s Loading NZ_GG705105.fna
229s Read 802bp (802 bytesp) in 0.000 seconds (3.0 MBp/s)
229s Done with forward strand (802bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705105.fna loaded. 802 bytes
229s Loading NZ_GG705105.gbk
229s Read 802bp (802 bytesp) in 0.000 seconds (3.3 MBp/s)
229s Done with forward strand (802bp). Preparing reverse complement...
229s  <-> Reversing metdata.
229s Done.
229s Seq NZ_GG705105.gbk loaded. 802 bytes
229s Sequence loading took: 0.001 seconds
229s Forward frequencies:  A:33.9152%  C:17.7057%  G:18.2045%  T:30.1746%
229s Global base frequencies:  A/T:64.0898%  C/G:35.9102%
229s Pat: 3 bases long with weight 2
229s    1 101 
229s Computing hash parameters...
229s Using 4 hashbits
230s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Acceptable hash function found after 1000 cycles.
230s Best uses 2/2 bases and has 0 empties from 2 inputs.
230s Score: 0.96875 (cf. worst: -4.51562)
230s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
230s Total correlation penalty: 0
230s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
230s                                             10
230s                                             ==
230s w[ 0]>>29:                                 -.C
230s w[ 0]>>30:                                  A.-
230s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
230s Ecolist (optimistic): Expcted entries per list: 8
230s Ecolist (optimistic): Minimum chunks per list: 4
230s Would take minimum 256.000000 bytes to make perfect hash.
230s Hashing 3.13 KB of sequence requires: 
230s  ~ linear (in seq length) hashing cost of 5.09 KB
230s  ~ linear (in seq length) expected anchor cost of 75.19 KB
230s Initial hash table uses: 256 bytes (4 bits, 16 entries)
230s Expected memory usage (without anchors): 5.34 KB
230s Expected memory usage (with anchors): 80.53 KB
230s Hash parameters computed in 0.133 seconds
230s Creating storage structures: 16 entries in 256 bytes space.
230s Storage structures created in: 0.000 seconds
230s 
230s Hashing NZ_GG705105.fna forwards
230s  0%........ (T -0.004 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%.......
230s Hashing NZ_GG705105.fna backwards
230s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%.......
230s Hashing NZ_GG705105.gbk forwards
230s  0%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%.......
230s Hashing NZ_GG705105.gbk backwards
230s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%.......
230s Initial hashing took: 0.002 seconds
230s Extracting anchors from hash-space.
230s  (T -0.004 seconds) ETA: Thu Mar 14 20:18:11 2024
230s  6%. (T -0.003 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 18%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 31%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 93%.
230s Anchor extraction completed in: 0.002 seconds
230s Total anchors: 0
230s Anchor extraction + merge time: 0.002 seconds
230s Total processing time: 0.138 seconds
230s Writing anchors...
230s Total seeds used in anchors: 16
230s Hash performance:
230s  Keys used: 16 out of 16 possible (100.00%).
230s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
230s  Average pigeons per pigeon hole: 1
230s Writing 16 repeats...Output writing finished in: 0.001 seconds
230s Total time: 0.139 seconds
230s Murasaki finished!
230s PASSED MURASAKI
230s 
230s Testing Genepare on NZ_GG705105.fna
230s 18446744073709551419
230s PASSED GENEPARSE
230s 
230s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
230s Testing mbfa on NZ_GG705105.fna
230s PASSED mbfa
230s 
230s Test Murasaki on NZ_GG705106.fna
230s Verbosity level is: 0
230s Writing to: output/test
230s Pattern is: 101
230s Max usable hash bits: 27
230s Hit filter is: 0
230s Hash table type is: EcoHash
230s Hashing every: 1 base
230s Histogram detail is: 0
230s Hashing function is: 3
230s Collision profiling is: disabled
230s Repeats are: unmasked
230s Mergefilter is at: 100
230s Random seed: 1710447491 (automatic)
230s Bitscore output: on
230s Leave status records: no
230s Join neighbors is: off
230s Target memory is: 1.24 GB
230s Retain members is: true
230s Store repeatmap? yes
230s Reverse complement data is generated on the fly
230s Rifts allowed: 0
230s Fuzzy Extension: yes
230s Score by minimum pair: yes
230s Gapped anchors: no
230s Large sequence support is: enabled => seqpos is 8 bytes
230s Murasaki version 1.68.6 (LARGESEQ)
230s Loading NZ_GG705106.fna
230s Read 800bp (800 bytesp) in 0.000 seconds (2.9 MBp/s)
230s Done with forward strand (800bp). Preparing reverse complement...
230s  <-> Reversing metdata.
230s Done.
230s Seq NZ_GG705106.fna loaded. 800 bytes
230s Loading NZ_GG705106.gbk
230s Read 800bp (800 bytesp) in 0.000 seconds (1.8 MBp/s)
230s Done with forward strand (800bp). Preparing reverse complement...
230s  <-> Reversing metdata.
230s Done.
230s Seq NZ_GG705106.gbk loaded. 800 bytes
230s Sequence loading took: 0.001 seconds
230s Forward frequencies:  A:28.875%  C:18%  G:21.625%  T:31.5%
230s Global base frequencies:  A/T:60.375%  C/G:39.625%
230s Pat: 3 bases long with weight 2
230s    1 101 
230s Computing hash parameters...
230s Using 4 hashbits
230s  0%......... (T -0.123 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Acceptable hash function found after 1000 cycles.
230s Best uses 2/2 bases and has 0 empties from 2 inputs.
230s Score: 0.96875 (cf. worst: -4.51562)
230s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
230s Total correlation penalty: 0
230s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
230s                                             10
230s                                             ==
230s w[ 0]>>29:                                 -.C
230s w[ 0]>>30:                                  A.-
230s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
230s Ecolist (optimistic): Expcted entries per list: 8
230s Ecolist (optimistic): Minimum chunks per list: 4
230s Would take minimum 256.000000 bytes to make perfect hash.
230s Hashing 3.12 KB of sequence requires: 
230s  ~ linear (in seq length) hashing cost of 5.08 KB
230s  ~ linear (in seq length) expected anchor cost of 75.00 KB
230s Initial hash table uses: 256 bytes (4 bits, 16 entries)
230s Expected memory usage (without anchors): 5.33 KB
230s Expected memory usage (with anchors): 80.33 KB
230s Hash parameters computed in 0.133 seconds
230s Creating storage structures: 16 entries in 256 bytes space.
230s Storage structures created in: 0.000 seconds
230s 
230s Hashing NZ_GG705106.fna forwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 90%.........
230s Hashing NZ_GG705106.fna backwards
230s  0%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 90%.........
230s Hashing NZ_GG705106.gbk forwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 90%.........
230s Hashing NZ_GG705106.gbk backwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 90%.........
230s Initial hashing took: 0.003 seconds
230s Extracting anchors from hash-space.
230s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 93%.
230s Anchor extraction completed in: 0.001 seconds
230s Total anchors: 0
230s Anchor extraction + merge time: 0.001 seconds
230s Total processing time: 0.139 seconds
230s Writing anchors...
230s Total seeds used in anchors: 16
230s Hash performance:
230s  Keys used: 16 out of 16 possible (100.00%).
230s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
230s  Average pigeons per pigeon hole: 1
230s Writing 16 repeats...Output writing finished in: 0.001 seconds
230s Total time: 0.140 seconds
230s Murasaki finished!
230s PASSED MURASAKI
230s 
230s Testing Genepare on NZ_GG705106.fna
230s 18446744073709551417
230s PASSED GENEPARSE
230s 
230s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
230s Testing mbfa on NZ_GG705106.fna
230s PASSED mbfa
230s 
230s Test Murasaki on NZ_GG705107.fna
230s Verbosity level is: 0
230s Writing to: output/test
230s Pattern is: 101
230s Max usable hash bits: 27
230s Hit filter is: 0
230s Hash table type is: EcoHash
230s Hashing every: 1 base
230s Histogram detail is: 0
230s Hashing function is: 3
230s Collision profiling is: disabled
230s Repeats are: unmasked
230s Mergefilter is at: 100
230s Random seed: 1710447491 (automatic)
230s Bitscore output: on
230s Leave status records: no
230s Join neighbors is: off
230s Target memory is: 1.24 GB
230s Retain members is: true
230s Store repeatmap? yes
230s Reverse complement data is generated on the fly
230s Rifts allowed: 0
230s Fuzzy Extension: yes
230s Score by minimum pair: yes
230s Gapped anchors: no
230s Large sequence support is: enabled => seqpos is 8 bytes
230s Murasaki version 1.68.6 (LARGESEQ)
230s Loading NZ_GG705107.fna
230s Read 793bp (793 bytesp) in 0.000 seconds (2.6 MBp/s)
230s Done with forward strand (793bp). Preparing reverse complement...
230s  <-> Reversing metdata.
230s Done.
230s Seq NZ_GG705107.fna loaded. 793 bytes
230s Loading NZ_GG705107.gbk
230s Read 793bp (793 bytesp) in 0.000 seconds (3.0 MBp/s)
230s Done with forward strand (793bp). Preparing reverse complement...
230s  <-> Reversing metdata.
230s Done.
230s Seq NZ_GG705107.gbk loaded. 793 bytes
230s Sequence loading took: 0.001 seconds
230s Forward frequencies:  A:29.5082%  C:14.3758%  G:19.4199%  T:36.6961%
230s Global base frequencies:  A/T:66.2043%  C/G:33.7957%
230s Pat: 3 bases long with weight 2
230s    1 101 
230s Computing hash parameters...
230s Using 4 hashbits
230s  0%......... (T -0.127 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.110 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Acceptable hash function found after 1000 cycles.
230s Best uses 2/2 bases and has 0 empties from 2 inputs.
230s Score: 0.96875 (cf. worst: -4.51562)
230s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
230s Total correlation penalty: 0
230s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
230s                                             10
230s                                             ==
230s w[ 0]>>29:                                 -.C
230s w[ 0]>>30:                                  A.-
230s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
230s Ecolist (optimistic): Expcted entries per list: 8
230s Ecolist (optimistic): Minimum chunks per list: 4
230s Would take minimum 256.000000 bytes to make perfect hash.
230s Hashing 3.10 KB of sequence requires: 
230s  ~ linear (in seq length) hashing cost of 5.03 KB
230s  ~ linear (in seq length) expected anchor cost of 74.34 KB
230s Initial hash table uses: 256 bytes (4 bits, 16 entries)
230s Expected memory usage (without anchors): 5.28 KB
230s Expected memory usage (with anchors): 79.62 KB
230s Hash parameters computed in 0.133 seconds
230s Creating storage structures: 16 entries in 256 bytes space.
230s Storage structures created in: 0.000 seconds
230s 
230s Hashing NZ_GG705107.fna forwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Hashing NZ_GG705107.fna backwards
230s  0%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Hashing NZ_GG705107.gbk forwards
230s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Hashing NZ_GG705107.gbk backwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Initial hashing took: 0.002 seconds
230s Extracting anchors from hash-space.
230s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 93%.
230s Anchor extraction completed in: 0.002 seconds
230s Total anchors: 0
230s Anchor extraction + merge time: 0.002 seconds
230s Total processing time: 0.138 seconds
230s Writing anchors...
230s Total seeds used in anchors: 16
230s Hash performance:
230s  Keys used: 16 out of 16 possible (100.00%).
230s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
230s  Average pigeons per pigeon hole: 1
230s Writing 16 repeats...Output writing finished in: 0.001 seconds
230s Total time: 0.139 seconds
230s Murasaki finished!
230s PASSED MURASAKI
230s 
230s Testing Genepare on NZ_GG705107.fna
230s 18446744073709551410
230s PASSED GENEPARSE
230s 
230s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
230s Testing mbfa on NZ_GG705107.fna
230s PASSED mbfa
230s 
230s Test Murasaki on NZ_GG705108.fna
230s Verbosity level is: 0
230s Writing to: output/test
230s Pattern is: 101
230s Max usable hash bits: 27
230s Hit filter is: 0
230s Hash table type is: EcoHash
230s Hashing every: 1 base
230s Histogram detail is: 0
230s Hashing function is: 3
230s Collision profiling is: disabled
230s Repeats are: unmasked
230s Mergefilter is at: 100
230s Random seed: 1710447491 (automatic)
230s Bitscore output: on
230s Leave status records: no
230s Join neighbors is: off
230s Target memory is: 1.24 GB
230s Retain members is: true
230s Store repeatmap? yes
230s Reverse complement data is generated on the fly
230s Rifts allowed: 0
230s Fuzzy Extension: yes
230s Score by minimum pair: yes
230s Gapped anchors: no
230s Large sequence support is: enabled => seqpos is 8 bytes
230s Murasaki version 1.68.6 (LARGESEQ)
230s Loading NZ_GG705108.fna
230s Read 792bp (792 bytesp) in 0.000 seconds (3.0 MBp/s)
230s Done with forward strand (792bp). Preparing reverse complement...
230s  <-> Reversing metdata.
230s Done.
230s Seq NZ_GG705108.fna loaded. 792 bytes
230s Loading NZ_GG705108.gbk
230s Read 792bp (792 bytesp) in 0.000 seconds (3.2 MBp/s)
230s Done with forward strand (792bp). Preparing reverse complement...
230s  <-> Reversing metdata.
230s Done.
230s Seq NZ_GG705108.gbk loaded. 792 bytes
230s Sequence loading took: 0.001 seconds
230s Forward frequencies:  A:34.9747%  C:15.6566%  G:20.8333%  T:28.5354%
230s Global base frequencies:  A/T:63.5101%  C/G:36.4899%
230s Pat: 3 bases long with weight 2
230s    1 101 
230s Computing hash parameters...
230s Using 4 hashbits
230s  0%......... (T -0.120 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Acceptable hash function found after 1000 cycles.
230s Best uses 2/2 bases and has 0 empties from 2 inputs.
230s Score: 0.96875 (cf. worst: -4.51562)
230s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
230s Total correlation penalty: 0
230s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
230s                                             10
230s                                             ==
230s w[ 0]>>29:                                 -.C
230s w[ 0]>>30:                                  A.-
230s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
230s Ecolist (optimistic): Expcted entries per list: 8
230s Ecolist (optimistic): Minimum chunks per list: 4
230s Would take minimum 256.000000 bytes to make perfect hash.
230s Hashing 3.09 KB of sequence requires: 
230s  ~ linear (in seq length) hashing cost of 5.03 KB
230s  ~ linear (in seq length) expected anchor cost of 74.25 KB
230s Initial hash table uses: 256 bytes (4 bits, 16 entries)
230s Expected memory usage (without anchors): 5.28 KB
230s Expected memory usage (with anchors): 79.53 KB
230s Hash parameters computed in 0.133 seconds
230s Creating storage structures: 16 entries in 256 bytes space.
230s Storage structures created in: 0.000 seconds
230s 
230s Hashing NZ_GG705108.fna forwards
230s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Hashing NZ_GG705108.fna backwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Hashing NZ_GG705108.gbk forwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Hashing NZ_GG705108.gbk backwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Initial hashing took: 0.003 seconds
230s Extracting anchors from hash-space.
230s  (T -0.003 seconds) ETA: Thu Mar 14 20:18:11 2024
230s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 93%.
230s Anchor extraction completed in: 0.002 seconds
230s Total anchors: 0
230s Anchor extraction + merge time: 0.002 seconds
230s Total processing time: 0.139 seconds
230s Writing anchors...
230s Total seeds used in anchors: 16
230s Hash performance:
230s  Keys used: 16 out of 16 possible (100.00%).
230s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
230s  Average pigeons per pigeon hole: 1
230s Writing 16 repeats...Output writing finished in: 0.001 seconds
230s Total time: 0.139 seconds
230s Murasaki finished!
230s PASSED MURASAKI
230s 
230s Testing Genepare on NZ_GG705108.fna
230s 18446744073709551409
230s PASSED GENEPARSE
230s 
230s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
230s Testing mbfa on NZ_GG705108.fna
230s PASSED mbfa
230s 
230s Test Murasaki on NZ_GG705109.fna
230s Verbosity level is: 0
230s Writing to: output/test
230s Pattern is: 101
230s Max usable hash bits: 27
230s Hit filter is: 0
230s Hash table type is: EcoHash
230s Hashing every: 1 base
230s Histogram detail is: 0
230s Hashing function is: 3
230s Collision profiling is: disabled
230s Repeats are: unmasked
230s Mergefilter is at: 100
230s Random seed: 1710447491 (automatic)
230s Bitscore output: on
230s Leave status records: no
230s Join neighbors is: off
230s Target memory is: 1.24 GB
230s Retain members is: true
230s Store repeatmap? yes
230s Reverse complement data is generated on the fly
230s Rifts allowed: 0
230s Fuzzy Extension: yes
230s Score by minimum pair: yes
230s Gapped anchors: no
230s Large sequence support is: enabled => seqpos is 8 bytes
230s Murasaki version 1.68.6 (LARGESEQ)
230s Loading NZ_GG705109.fna
230s Read 790bp (790 bytesp) in 0.000 seconds (2.7 MBp/s)
230s Done with forward strand (790bp). Preparing reverse complement...
230s  <-> Reversing metdata.
230s Done.
230s Seq NZ_GG705109.fna loaded. 790 bytes
230s Loading NZ_GG705109.gbk
230s Read 790bp (790 bytesp) in 0.000 seconds (3.2 MBp/s)
230s Done with forward strand (790bp). Preparing reverse complement...
230s  <-> Reversing metdata.
230s Done.
230s Seq NZ_GG705109.gbk loaded. 790 bytes
230s Sequence loading took: 0.001 seconds
230s Forward frequencies:  A:27.5949%  C:25.0633%  G:23.038%  T:24.3038%
230s Global base frequencies:  A/T:51.8987%  C/G:48.1013%
230s Pat: 3 bases long with weight 2
230s    1 101 
230s Computing hash parameters...
230s Using 4 hashbits
230s  0%......... (T -0.126 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.115 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.101 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.085 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.071 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.056 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.042 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.028 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 91%........
230s Acceptable hash function found after 1000 cycles.
230s Best uses 2/2 bases and has 0 empties from 2 inputs.
230s Score: 0.96875 (cf. worst: -4.51562)
230s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
230s Total correlation penalty: 0
230s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
230s                                             10
230s                                             ==
230s w[ 0]>>29:                                 -.C
230s w[ 0]>>30:                                  A.-
230s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
230s Ecolist (optimistic): Expcted entries per list: 8
230s Ecolist (optimistic): Minimum chunks per list: 4
230s Would take minimum 256.000000 bytes to make perfect hash.
230s Hashing 3.09 KB of sequence requires: 
230s  ~ linear (in seq length) hashing cost of 5.01 KB
230s  ~ linear (in seq length) expected anchor cost of 74.06 KB
230s Initial hash table uses: 256 bytes (4 bits, 16 entries)
230s Expected memory usage (without anchors): 5.26 KB
230s Expected memory usage (with anchors): 79.33 KB
230s Hash parameters computed in 0.138 seconds
230s Creating storage structures: 16 entries in 256 bytes space.
230s Storage structures created in: 0.000 seconds
230s 
230s Hashing NZ_GG705109.fna forwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 90%.........
230s Hashing NZ_GG705109.fna backwards
230s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 90%.........
230s Hashing NZ_GG705109.gbk forwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 90%.........
230s Hashing NZ_GG705109.gbk backwards
230s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 90%.........
230s Initial hashing took: 0.003 seconds
230s Extracting anchors from hash-space.
230s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:11 2024
230s 93%.
230s Anchor extraction completed in: 0.001 seconds
230s Total anchors: 0
230s Anchor extraction + merge time: 0.001 seconds
230s Total processing time: 0.143 seconds
230s Writing anchors...
230s Total seeds used in anchors: 16
230s Hash performance:
230s  Keys used: 16 out of 16 possible (100.00%).
230s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
230s  Average pigeons per pigeon hole: 1
230s Writing 16 repeats...Output writing finished in: 0.001 seconds
230s Total time: 0.144 seconds
230s Murasaki finished!
230s PASSED MURASAKI
230s 
230s Testing Genepare on NZ_GG705109.fna
230s 18446744073709551407
230s PASSED GENEPARSE
230s 
230s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
230s Testing mbfa on NZ_GG705109.fna
230s PASSED mbfa
230s 
230s Test Murasaki on NZ_GG705110.fna
230s Verbosity level is: 0
230s Writing to: output/test
230s Pattern is: 101
230s Max usable hash bits: 27
230s Hit filter is: 0
230s Hash table type is: EcoHash
230s Hashing every: 1 base
230s Histogram detail is: 0
230s Hashing function is: 3
230s Collision profiling is: disabled
230s Repeats are: unmasked
230s Mergefilter is at: 100
230s Random seed: 1710447491 (automatic)
230s Bitscore output: on
230s Leave status records: no
230s Join neighbors is: off
230s Target memory is: 1.24 GB
230s Retain members is: true
230s Store repeatmap? yes
230s Reverse complement data is generated on the fly
230s Rifts allowed: 0
230s Fuzzy Extension: yes
230s Score by minimum pair: yes
230s Gapped anchors: no
230s Large sequence support is: enabled => seqpos is 8 bytes
230s Murasaki version 1.68.6 (LARGESEQ)
230s Loading NZ_GG705110.fna
230s Read 789bp (789 bytesp) in 0.000 seconds (2.9 MBp/s)
230s Done with forward strand (789bp). Preparing reverse complement...
230s  <-> Reversing metdata.
230s Done.
230s Seq NZ_GG705110.fna loaded. 789 bytes
230s Loading NZ_GG705110.gbk
230s Read 789bp (789 bytesp) in 0.000 seconds (2.5 MBp/s)
230s Done with forward strand (789bp). Preparing reverse complement...
230s  <-> Reversing metdata.
230s Done.
230s Seq NZ_GG705110.gbk loaded. 789 bytes
230s Sequence loading took: 0.001 seconds
230s Forward frequencies:  A:28.6439%  C:19.5184%  G:16.0963%  T:35.7414%
230s Global base frequencies:  A/T:64.3853%  C/G:35.6147%
230s Pat: 3 bases long with weight 2
230s    1 101 
230s Computing hash parameters...
230s Using 4 hashbits
230s  0%......... (T -0.129 seconds) ETA: Thu Mar 14 20:18:12 2024
230s 10%......... (T -0.120 seconds) ETA: Thu Mar 14 20:18:12 2024
230s 20%......... (T -0.102 seconds) ETA: Thu Mar 14 20:18:12 2024
230s 30%......... (T -0.086 seconds) ETA: Thu Mar 14 20:18:12 2024
230s 40%......... (T -0.071 seconds) ETA: Thu Mar 14 20:18:12 2024
230s 50%......... (T -0.056 seconds) ETA: Thu Mar 14 20:18:12 2024
230s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 91%........
231s Acceptable hash function found after 1000 cycles.
231s Best uses 2/2 bases and has 0 empties from 2 inputs.
231s Score: 0.96875 (cf. worst: -4.51562)
231s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
231s Total correlation penalty: 0
231s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
231s                                             10
231s                                             ==
231s w[ 0]>>29:                                 -.C
231s w[ 0]>>30:                                  A.-
231s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
231s Ecolist (optimistic): Expcted entries per list: 8
231s Ecolist (optimistic): Minimum chunks per list: 4
231s Would take minimum 256.000000 bytes to make perfect hash.
231s Hashing 3.08 KB of sequence requires: 
231s  ~ linear (in seq length) hashing cost of 5.00 KB
231s  ~ linear (in seq length) expected anchor cost of 73.97 KB
231s Initial hash table uses: 256 bytes (4 bits, 16 entries)
231s Expected memory usage (without anchors): 5.25 KB
231s Expected memory usage (with anchors): 79.22 KB
231s Hash parameters computed in 0.137 seconds
231s Creating storage structures: 16 entries in 256 bytes space.
231s Storage structures created in: 0.000 seconds
231s 
231s Hashing NZ_GG705110.fna forwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Hashing NZ_GG705110.fna backwards
231s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Hashing NZ_GG705110.gbk forwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Hashing NZ_GG705110.gbk backwards
231s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Initial hashing took: 0.003 seconds
231s Extracting anchors from hash-space.
231s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 93%.
231s Anchor extraction completed in: 0.002 seconds
231s Total anchors: 0
231s Anchor extraction + merge time: 0.002 seconds
231s Total processing time: 0.142 seconds
231s Writing anchors...
231s Total seeds used in anchors: 16
231s Hash performance:
231s  Keys used: 16 out of 16 possible (100.00%).
231s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
231s  Average pigeons per pigeon hole: 1
231s Writing 16 repeats...Output writing finished in: 0.001 seconds
231s Total time: 0.143 seconds
231s Murasaki finished!
231s PASSED MURASAKI
231s 
231s Testing Genepare on NZ_GG705110.fna
231s 18446744073709551406
231s PASSED GENEPARSE
231s 
231s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
231s Testing mbfa on NZ_GG705110.fna
231s PASSED mbfa
231s 
231s Test Murasaki on NZ_GG705111.fna
231s Verbosity level is: 0
231s Writing to: output/test
231s Pattern is: 101
231s Max usable hash bits: 27
231s Hit filter is: 0
231s Hash table type is: EcoHash
231s Hashing every: 1 base
231s Histogram detail is: 0
231s Hashing function is: 3
231s Collision profiling is: disabled
231s Repeats are: unmasked
231s Mergefilter is at: 100
231s Random seed: 1710447492 (automatic)
231s Bitscore output: on
231s Leave status records: no
231s Join neighbors is: off
231s Target memory is: 1.24 GB
231s Retain members is: true
231s Store repeatmap? yes
231s Reverse complement data is generated on the fly
231s Rifts allowed: 0
231s Fuzzy Extension: yes
231s Score by minimum pair: yes
231s Gapped anchors: no
231s Large sequence support is: enabled => seqpos is 8 bytes
231s Murasaki version 1.68.6 (LARGESEQ)
231s Loading NZ_GG705111.fna
231s Read 788bp (788 bytesp) in 0.000 seconds (2.2 MBp/s)
231s Done with forward strand (788bp). Preparing reverse complement...
231s  <-> Reversing metdata.
231s Done.
231s Seq NZ_GG705111.fna loaded. 788 bytes
231s Loading NZ_GG705111.gbk
231s Read 788bp (788 bytesp) in 0.000 seconds (2.7 MBp/s)
231s Done with forward strand (788bp). Preparing reverse complement...
231s  <-> Reversing metdata.
231s Done.
231s Seq NZ_GG705111.gbk loaded. 788 bytes
231s Sequence loading took: 0.001 seconds
231s Forward frequencies:  A:35.1523%  C:15.3553%  G:20.0508%  T:29.4416%
231s Global base frequencies:  A/T:64.5939%  C/G:35.4061%
231s Pat: 3 bases long with weight 2
231s    1 101 
231s Computing hash parameters...
231s Using 4 hashbits
231s  0%......... (T -0.120 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 91%........
231s Acceptable hash function found after 1000 cycles.
231s Best uses 2/2 bases and has 0 empties from 2 inputs.
231s Score: 0.96875 (cf. worst: -4.51562)
231s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
231s Total correlation penalty: 0
231s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
231s                                             10
231s                                             ==
231s w[ 0]>>29:                                 -.C
231s w[ 0]>>30:                                  A.-
231s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
231s Ecolist (optimistic): Expcted entries per list: 8
231s Ecolist (optimistic): Minimum chunks per list: 4
231s Would take minimum 256.000000 bytes to make perfect hash.
231s Hashing 3.08 KB of sequence requires: 
231s  ~ linear (in seq length) hashing cost of 5.00 KB
231s  ~ linear (in seq length) expected anchor cost of 73.88 KB
231s Initial hash table uses: 256 bytes (4 bits, 16 entries)
231s Expected memory usage (without anchors): 5.25 KB
231s Expected memory usage (with anchors): 79.13 KB
231s Hash parameters computed in 0.132 seconds
231s Creating storage structures: 16 entries in 256 bytes space.
231s Storage structures created in: 0.000 seconds
231s 
231s Hashing NZ_GG705111.fna forwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Hashing NZ_GG705111.fna backwards
231s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Hashing NZ_GG705111.gbk forwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Hashing NZ_GG705111.gbk backwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Initial hashing took: 0.003 seconds
231s Extracting anchors from hash-space.
231s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 93%.
231s Anchor extraction completed in: 0.002 seconds
231s Total anchors: 0
231s Anchor extraction + merge time: 0.002 seconds
231s Total processing time: 0.137 seconds
231s Writing anchors...
231s Total seeds used in anchors: 16
231s Hash performance:
231s  Keys used: 16 out of 16 possible (100.00%).
231s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
231s  Average pigeons per pigeon hole: 1
231s Writing 16 repeats...Output writing finished in: 0.001 seconds
231s Total time: 0.138 seconds
231s Murasaki finished!
231s PASSED MURASAKI
231s 
231s Testing Genepare on NZ_GG705111.fna
231s 18446744073709551405
231s PASSED GENEPARSE
231s 
231s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
231s Testing mbfa on NZ_GG705111.fna
231s PASSED mbfa
231s 
231s Test Murasaki on NZ_GG705112.fna
231s Verbosity level is: 0
231s Writing to: output/test
231s Pattern is: 101
231s Max usable hash bits: 27
231s Hit filter is: 0
231s Hash table type is: EcoHash
231s Hashing every: 1 base
231s Histogram detail is: 0
231s Hashing function is: 3
231s Collision profiling is: disabled
231s Repeats are: unmasked
231s Mergefilter is at: 100
231s Random seed: 1710447492 (automatic)
231s Bitscore output: on
231s Leave status records: no
231s Join neighbors is: off
231s Target memory is: 1.24 GB
231s Retain members is: true
231s Store repeatmap? yes
231s Reverse complement data is generated on the fly
231s Rifts allowed: 0
231s Fuzzy Extension: yes
231s Score by minimum pair: yes
231s Gapped anchors: no
231s Large sequence support is: enabled => seqpos is 8 bytes
231s Murasaki version 1.68.6 (LARGESEQ)
231s Loading NZ_GG705112.fna
231s Read 787bp (787 bytesp) in 0.000 seconds (2.9 MBp/s)
231s Done with forward strand (787bp). Preparing reverse complement...
231s  <-> Reversing metdata.
231s Done.
231s Seq NZ_GG705112.fna loaded. 787 bytes
231s Loading NZ_GG705112.gbk
231s Read 787bp (787 bytesp) in 0.000 seconds (3.2 MBp/s)
231s Done with forward strand (787bp). Preparing reverse complement...
231s  <-> Reversing metdata.
231s Done.
231s Seq NZ_GG705112.gbk loaded. 787 bytes
231s Sequence loading took: 0.001 seconds
231s Forward frequencies:  A:29.352%  C:21.601%  G:15.5019%  T:33.5451%
231s Global base frequencies:  A/T:62.8971%  C/G:37.1029%
231s Pat: 3 bases long with weight 2
231s    1 101 
231s Computing hash parameters...
231s Using 4 hashbits
231s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.092 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 91%........
231s Acceptable hash function found after 1000 cycles.
231s Best uses 2/2 bases and has 0 empties from 2 inputs.
231s Score: 0.96875 (cf. worst: -4.51562)
231s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
231s Total correlation penalty: 0
231s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
231s                                             10
231s                                             ==
231s w[ 0]>>29:                                 -.C
231s w[ 0]>>30:                                  A.-
231s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
231s Ecolist (optimistic): Expcted entries per list: 8
231s Ecolist (optimistic): Minimum chunks per list: 4
231s Would take minimum 256.000000 bytes to make perfect hash.
231s Hashing 3.07 KB of sequence requires: 
231s  ~ linear (in seq length) hashing cost of 4.99 KB
231s  ~ linear (in seq length) expected anchor cost of 73.78 KB
231s Initial hash table uses: 256 bytes (4 bits, 16 entries)
231s Expected memory usage (without anchors): 5.24 KB
231s Expected memory usage (with anchors): 79.02 KB
231s Hash parameters computed in 0.134 seconds
231s Creating storage structures: 16 entries in 256 bytes space.
231s Storage structures created in: 0.000 seconds
231s 
231s Hashing NZ_GG705112.fna forwards
231s  0%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Hashing NZ_GG705112.fna backwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Hashing NZ_GG705112.gbk forwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Hashing NZ_GG705112.gbk backwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%.........
231s Initial hashing took: 0.003 seconds
231s Extracting anchors from hash-space.
231s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 93%.
231s Anchor extraction completed in: 0.002 seconds
231s Total anchors: 0
231s Anchor extraction + merge time: 0.002 seconds
231s Total processing time: 0.139 seconds
231s Writing anchors...
231s Total seeds used in anchors: 16
231s Hash performance:
231s  Keys used: 16 out of 16 possible (100.00%).
231s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
231s  Average pigeons per pigeon hole: 1
231s Writing 16 repeats...Output writing finished in: 0.001 seconds
231s Total time: 0.140 seconds
231s Murasaki finished!
231s PASSED MURASAKI
231s 
231s Testing Genepare on NZ_GG705112.fna
231s 18446744073709551404
231s PASSED GENEPARSE
231s 
231s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
231s Testing mbfa on NZ_GG705112.fna
231s PASSED mbfa
231s 
231s Test Murasaki on NZ_GG705113.fna
231s Verbosity level is: 0
231s Writing to: output/test
231s Pattern is: 101
231s Max usable hash bits: 27
231s Hit filter is: 0
231s Hash table type is: EcoHash
231s Hashing every: 1 base
231s Histogram detail is: 0
231s Hashing function is: 3
231s Collision profiling is: disabled
231s Repeats are: unmasked
231s Mergefilter is at: 100
231s Random seed: 1710447492 (automatic)
231s Bitscore output: on
231s Leave status records: no
231s Join neighbors is: off
231s Target memory is: 1.24 GB
231s Retain members is: true
231s Store repeatmap? yes
231s Reverse complement data is generated on the fly
231s Rifts allowed: 0
231s Fuzzy Extension: yes
231s Score by minimum pair: yes
231s Gapped anchors: no
231s Large sequence support is: enabled => seqpos is 8 bytes
231s Murasaki version 1.68.6 (LARGESEQ)
231s Loading NZ_GG705113.fna
231s Read 776bp (776 bytesp) in 0.000 seconds (2.9 MBp/s)
231s Done with forward strand (776bp). Preparing reverse complement...
231s  <-> Reversing metdata.
231s Done.
231s Seq NZ_GG705113.fna loaded. 776 bytes
231s Loading NZ_GG705113.gbk
231s Read 776bp (776 bytesp) in 0.000 seconds (1.9 MBp/s)
231s Done with forward strand (776bp). Preparing reverse complement...
231s  <-> Reversing metdata.
231s Done.
231s Seq NZ_GG705113.gbk loaded. 776 bytes
231s Sequence loading took: 0.001 seconds
231s Forward frequencies:  A:27.3196%  C:23.7113%  G:22.6804%  T:26.2887%
231s Global base frequencies:  A/T:53.6082%  C/G:46.3918%
231s Pat: 3 bases long with weight 2
231s    1 101 
231s Computing hash parameters...
231s Using 4 hashbits
231s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 91%........
231s Acceptable hash function found after 1000 cycles.
231s Best uses 2/2 bases and has 0 empties from 2 inputs.
231s Score: 0.96875 (cf. worst: -4.51562)
231s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
231s Total correlation penalty: 0
231s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
231s                                             10
231s                                             ==
231s w[ 0]>>29:                                 -.C
231s w[ 0]>>30:                                  A.-
231s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
231s Ecolist (optimistic): Expcted entries per list: 8
231s Ecolist (optimistic): Minimum chunks per list: 4
231s Would take minimum 256.000000 bytes to make perfect hash.
231s Hashing 3.03 KB of sequence requires: 
231s  ~ linear (in seq length) hashing cost of 4.93 KB
231s  ~ linear (in seq length) expected anchor cost of 72.75 KB
231s Initial hash table uses: 256 bytes (4 bits, 16 entries)
231s Expected memory usage (without anchors): 5.18 KB
231s Expected memory usage (with anchors): 77.93 KB
231s Hash parameters computed in 0.132 seconds
231s Creating storage structures: 16 entries in 256 bytes space.
231s Storage structures created in: 0.000 seconds
231s 
231s Hashing NZ_GG705113.fna forwards
231s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%........
231s Hashing NZ_GG705113.fna backwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%........
231s Hashing NZ_GG705113.gbk forwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%........
231s Hashing NZ_GG705113.gbk backwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%........
231s Initial hashing took: 0.005 seconds
231s Extracting anchors from hash-space.
231s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 93%.
231s Anchor extraction completed in: 0.002 seconds
231s Total anchors: 0
231s Anchor extraction + merge time: 0.002 seconds
231s Total processing time: 0.141 seconds
231s Writing anchors...
231s Total seeds used in anchors: 16
231s Hash performance:
231s  Keys used: 16 out of 16 possible (100.00%).
231s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
231s  Average pigeons per pigeon hole: 1
231s Writing 16 repeats...Output writing finished in: 0.001 seconds
231s Total time: 0.143 seconds
231s Murasaki finished!
231s PASSED MURASAKI
231s 
231s Testing Genepare on NZ_GG705113.fna
231s 18446744073709551393
231s PASSED GENEPARSE
231s 
231s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
231s Testing mbfa on NZ_GG705113.fna
231s PASSED mbfa
231s 
231s Test Murasaki on NZ_GG705114.fna
231s Verbosity level is: 0
231s Writing to: output/test
231s Pattern is: 101
231s Max usable hash bits: 27
231s Hit filter is: 0
231s Hash table type is: EcoHash
231s Hashing every: 1 base
231s Histogram detail is: 0
231s Hashing function is: 3
231s Collision profiling is: disabled
231s Repeats are: unmasked
231s Mergefilter is at: 100
231s Random seed: 1710447492 (automatic)
231s Bitscore output: on
231s Leave status records: no
231s Join neighbors is: off
231s Target memory is: 1.24 GB
231s Retain members is: true
231s Store repeatmap? yes
231s Reverse complement data is generated on the fly
231s Rifts allowed: 0
231s Fuzzy Extension: yes
231s Score by minimum pair: yes
231s Gapped anchors: no
231s Large sequence support is: enabled => seqpos is 8 bytes
231s Murasaki version 1.68.6 (LARGESEQ)
231s Loading NZ_GG705114.fna
231s Read 713bp (713 bytesp) in 0.000 seconds (2.0 MBp/s)
231s Done with forward strand (713bp). Preparing reverse complement...
231s  <-> Reversing metdata.
231s Done.
231s Seq NZ_GG705114.fna loaded. 713 bytes
231s Loading NZ_GG705114.gbk
231s Read 713bp (713 bytesp) in 0.000 seconds (2.9 MBp/s)
231s Done with forward strand (713bp). Preparing reverse complement...
231s  <-> Reversing metdata.
231s Done.
231s Seq NZ_GG705114.gbk loaded. 713 bytes
231s Sequence loading took: 0.001 seconds
231s Forward frequencies:  A:27.3492%  C:13.0435%  G:17.2511%  T:42.3562%
231s Global base frequencies:  A/T:69.7055%  C/G:30.2945%
231s Pat: 3 bases long with weight 2
231s    1 101 
231s Computing hash parameters...
231s Using 4 hashbits
231s  0%......... (T -0.129 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.112 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.096 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 91%........
231s Acceptable hash function found after 1000 cycles.
231s Best uses 2/2 bases and has 0 empties from 2 inputs.
231s Score: 0.96875 (cf. worst: -4.51562)
231s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
231s Total correlation penalty: 0
231s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
231s                                             10
231s                                             ==
231s w[ 0]>>29:                                 -.C
231s w[ 0]>>30:                                  A.-
231s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
231s Ecolist (optimistic): Expcted entries per list: 8
231s Ecolist (optimistic): Minimum chunks per list: 4
231s Would take minimum 256.000000 bytes to make perfect hash.
231s Hashing 2.79 KB of sequence requires: 
231s  ~ linear (in seq length) hashing cost of 4.52 KB
231s  ~ linear (in seq length) expected anchor cost of 66.84 KB
231s Initial hash table uses: 256 bytes (4 bits, 16 entries)
231s Expected memory usage (without anchors): 4.77 KB
231s Expected memory usage (with anchors): 71.61 KB
231s Hash parameters computed in 0.134 seconds
231s Creating storage structures: 16 entries in 256 bytes space.
231s Storage structures created in: 0.000 seconds
231s 
231s Hashing NZ_GG705114.fna forwards
231s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 91%.......
231s Hashing NZ_GG705114.fna backwards
231s  0%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 91%.......
231s Hashing NZ_GG705114.gbk forwards
231s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 91%.......
231s Hashing NZ_GG705114.gbk backwards
231s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 91%.......
231s Initial hashing took: 0.002 seconds
231s Extracting anchors from hash-space.
231s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 93%.
231s Anchor extraction completed in: 0.001 seconds
231s Total anchors: 0
231s Anchor extraction + merge time: 0.001 seconds
231s Total processing time: 0.139 seconds
231s Writing anchors...
231s Total seeds used in anchors: 16
231s Hash performance:
231s  Keys used: 16 out of 16 possible (100.00%).
231s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
231s  Average pigeons per pigeon hole: 1
231s Writing 16 repeats...Output writing finished in: 0.001 seconds
231s Total time: 0.140 seconds
231s Murasaki finished!
231s PASSED MURASAKI
231s 
231s Testing Genepare on NZ_GG705114.fna
231s 18446744073709551330
231s PASSED GENEPARSE
231s 
231s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
231s Testing mbfa on NZ_GG705114.fna
231s PASSED mbfa
231s 
231s Test Murasaki on NZ_GG705115.fna
231s Verbosity level is: 0
231s Writing to: output/test
231s Pattern is: 101
231s Max usable hash bits: 27
231s Hit filter is: 0
231s Hash table type is: EcoHash
231s Hashing every: 1 base
231s Histogram detail is: 0
231s Hashing function is: 3
231s Collision profiling is: disabled
231s Repeats are: unmasked
231s Mergefilter is at: 100
231s Random seed: 1710447492 (automatic)
231s Bitscore output: on
231s Leave status records: no
231s Join neighbors is: off
231s Target memory is: 1.24 GB
231s Retain members is: true
231s Store repeatmap? yes
231s Reverse complement data is generated on the fly
231s Rifts allowed: 0
231s Fuzzy Extension: yes
231s Score by minimum pair: yes
231s Gapped anchors: no
231s Large sequence support is: enabled => seqpos is 8 bytes
231s Murasaki version 1.68.6 (LARGESEQ)
231s Loading NZ_GG705115.fna
231s Read 687bp (687 bytesp) in 0.000 seconds (1.9 MBp/s)
231s Done with forward strand (687bp). Preparing reverse complement...
231s  <-> Reversing metdata.
231s Done.
231s Seq NZ_GG705115.fna loaded. 687 bytes
231s Loading NZ_GG705115.gbk
231s Read 687bp (687 bytesp) in 0.000 seconds (1.9 MBp/s)
231s Done with forward strand (687bp). Preparing reverse complement...
231s  <-> Reversing metdata.
231s Done.
231s Seq NZ_GG705115.gbk loaded. 687 bytes
231s Sequence loading took: 0.001 seconds
231s Forward frequencies:  A:36.3901%  C:17.6128%  G:19.5051%  T:26.492%
231s Global base frequencies:  A/T:62.8821%  C/G:37.1179%
231s Pat: 3 bases long with weight 2
231s    1 101 
231s Computing hash parameters...
231s Using 4 hashbits
231s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 91%........
231s Acceptable hash function found after 1000 cycles.
231s Best uses 2/2 bases and has 0 empties from 2 inputs.
231s Score: 0.96875 (cf. worst: -4.51562)
231s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
231s Total correlation penalty: 0
231s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
231s                                             10
231s                                             ==
231s w[ 0]>>29:                                 -.C
231s w[ 0]>>30:                                  A.-
231s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
231s Ecolist (optimistic): Expcted entries per list: 8
231s Ecolist (optimistic): Minimum chunks per list: 4
231s Would take minimum 256.000000 bytes to make perfect hash.
231s Hashing 2.68 KB of sequence requires: 
231s  ~ linear (in seq length) hashing cost of 4.35 KB
231s  ~ linear (in seq length) expected anchor cost of 64.41 KB
231s Initial hash table uses: 256 bytes (4 bits, 16 entries)
231s Expected memory usage (without anchors): 4.60 KB
231s Expected memory usage (with anchors): 69.01 KB
231s Hash parameters computed in 0.134 seconds
231s Creating storage structures: 16 entries in 256 bytes space.
231s Storage structures created in: 0.000 seconds
231s 
231s Hashing NZ_GG705115.fna forwards
231s  0%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%........
231s Hashing NZ_GG705115.fna backwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%........
231s Hashing NZ_GG705115.gbk forwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%........
231s Hashing NZ_GG705115.gbk backwards
231s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 90%........
231s Initial hashing took: 0.002 seconds
231s Extracting anchors from hash-space.
231s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:12 2024
231s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:12 2024
231s 93%.
231s Anchor extraction completed in: 0.001 seconds
231s Total anchors: 0
231s Anchor extraction + merge time: 0.001 seconds
231s Total processing time: 0.140 seconds
231s Writing anchors...
231s Total seeds used in anchors: 16
231s Hash performance:
231s  Keys used: 16 out of 16 possible (100.00%).
231s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
231s  Average pigeons per pigeon hole: 1
231s Writing 16 repeats...Output writing finished in: 0.001 seconds
231s Total time: 0.140 seconds
231s Murasaki finished!
231s PASSED MURASAKI
231s 
231s Testing Genepare on NZ_GG705115.fna
231s 18446744073709551304
231s PASSED GENEPARSE
231s 
232s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
232s Testing mbfa on NZ_GG705115.fna
232s PASSED mbfa
232s 
232s Test Murasaki on NZ_GG705116.fna
232s Verbosity level is: 0
232s Writing to: output/test
232s Pattern is: 101
232s Max usable hash bits: 27
232s Hit filter is: 0
232s Hash table type is: EcoHash
232s Hashing every: 1 base
232s Histogram detail is: 0
232s Hashing function is: 3
232s Collision profiling is: disabled
232s Repeats are: unmasked
232s Mergefilter is at: 100
232s Random seed: 1710447492 (automatic)
232s Bitscore output: on
232s Leave status records: no
232s Join neighbors is: off
232s Target memory is: 1.24 GB
232s Retain members is: true
232s Store repeatmap? yes
232s Reverse complement data is generated on the fly
232s Rifts allowed: 0
232s Fuzzy Extension: yes
232s Score by minimum pair: yes
232s Gapped anchors: no
232s Large sequence support is: enabled => seqpos is 8 bytes
232s Murasaki version 1.68.6 (LARGESEQ)
232s Loading NZ_GG705116.fna
232s Read 687bp (687 bytesp) in 0.000 seconds (2.6 MBp/s)
232s Done with forward strand (687bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705116.fna loaded. 687 bytes
232s Loading NZ_GG705116.gbk
232s Read 687bp (687 bytesp) in 0.000 seconds (2.9 MBp/s)
232s Done with forward strand (687bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705116.gbk loaded. 687 bytes
232s Sequence loading took: 0.001 seconds
232s Forward frequencies:  A:36.3901%  C:18.0495%  G:19.7962%  T:25.7642%
232s Global base frequencies:  A/T:62.1543%  C/G:37.8457%
232s Pat: 3 bases long with weight 2
232s    1 101 
232s Computing hash parameters...
232s Using 4 hashbits
232s  0%......... (T -0.119 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.106 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.092 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.052 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 91%........
232s Acceptable hash function found after 1000 cycles.
232s Best uses 2/2 bases and has 0 empties from 2 inputs.
232s Score: 0.96875 (cf. worst: -4.51562)
232s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
232s Total correlation penalty: 0
232s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
232s                                             10
232s                                             ==
232s w[ 0]>>29:                                 -.C
232s w[ 0]>>30:                                  A.-
232s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
232s Ecolist (optimistic): Expcted entries per list: 8
232s Ecolist (optimistic): Minimum chunks per list: 4
232s Would take minimum 256.000000 bytes to make perfect hash.
232s Hashing 2.68 KB of sequence requires: 
232s  ~ linear (in seq length) hashing cost of 4.35 KB
232s  ~ linear (in seq length) expected anchor cost of 64.41 KB
232s Initial hash table uses: 256 bytes (4 bits, 16 entries)
232s Expected memory usage (without anchors): 4.60 KB
232s Expected memory usage (with anchors): 69.01 KB
232s Hash parameters computed in 0.132 seconds
232s Creating storage structures: 16 entries in 256 bytes space.
232s Storage structures created in: 0.000 seconds
232s 
232s Hashing NZ_GG705116.fna forwards
232s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705116.fna backwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705116.gbk forwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705116.gbk backwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Initial hashing took: 0.003 seconds
232s Extracting anchors from hash-space.
232s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:13 2024
232s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 93%.
232s Anchor extraction completed in: 0.001 seconds
232s Total anchors: 0
232s Anchor extraction + merge time: 0.001 seconds
232s Total processing time: 0.137 seconds
232s Writing anchors...
232s Total seeds used in anchors: 16
232s Hash performance:
232s  Keys used: 16 out of 16 possible (100.00%).
232s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
232s  Average pigeons per pigeon hole: 1
232s Writing 16 repeats...Output writing finished in: 0.001 seconds
232s Total time: 0.138 seconds
232s Murasaki finished!
232s PASSED MURASAKI
232s 
232s Testing Genepare on NZ_GG705116.fna
232s 18446744073709551304
232s PASSED GENEPARSE
232s 
232s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
232s Testing mbfa on NZ_GG705116.fna
232s PASSED mbfa
232s 
232s Test Murasaki on NZ_GG705117.fna
232s Verbosity level is: 0
232s Writing to: output/test
232s Pattern is: 101
232s Max usable hash bits: 27
232s Hit filter is: 0
232s Hash table type is: EcoHash
232s Hashing every: 1 base
232s Histogram detail is: 0
232s Hashing function is: 3
232s Collision profiling is: disabled
232s Repeats are: unmasked
232s Mergefilter is at: 100
232s Random seed: 1710447493 (automatic)
232s Bitscore output: on
232s Leave status records: no
232s Join neighbors is: off
232s Target memory is: 1.24 GB
232s Retain members is: true
232s Store repeatmap? yes
232s Reverse complement data is generated on the fly
232s Rifts allowed: 0
232s Fuzzy Extension: yes
232s Score by minimum pair: yes
232s Gapped anchors: no
232s Large sequence support is: enabled => seqpos is 8 bytes
232s Murasaki version 1.68.6 (LARGESEQ)
232s Loading NZ_GG705117.fna
232s Read 678bp (678 bytesp) in 0.000 seconds (2.6 MBp/s)
232s Done with forward strand (678bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705117.fna loaded. 678 bytes
232s Loading NZ_GG705117.gbk
232s Read 678bp (678 bytesp) in 0.000 seconds (2.8 MBp/s)
232s Done with forward strand (678bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705117.gbk loaded. 678 bytes
232s Sequence loading took: 0.001 seconds
232s Forward frequencies:  A:30.3835%  C:19.6165%  G:13.7168%  T:36.2832%
232s Global base frequencies:  A/T:66.6667%  C/G:33.3333%
232s Pat: 3 bases long with weight 2
232s    1 101 
232s Computing hash parameters...
232s Using 4 hashbits
232s  0%......... (T -0.122 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 91%........
232s Acceptable hash function found after 1000 cycles.
232s Best uses 2/2 bases and has 0 empties from 2 inputs.
232s Score: 0.96875 (cf. worst: -4.51562)
232s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
232s Total correlation penalty: 0
232s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
232s                                             10
232s                                             ==
232s w[ 0]>>29:                                 -.C
232s w[ 0]>>30:                                  A.-
232s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
232s Ecolist (optimistic): Expcted entries per list: 8
232s Ecolist (optimistic): Minimum chunks per list: 4
232s Would take minimum 256.000000 bytes to make perfect hash.
232s Hashing 2.65 KB of sequence requires: 
232s  ~ linear (in seq length) hashing cost of 4.30 KB
232s  ~ linear (in seq length) expected anchor cost of 63.56 KB
232s Initial hash table uses: 256 bytes (4 bits, 16 entries)
232s Expected memory usage (without anchors): 4.55 KB
232s Expected memory usage (with anchors): 68.12 KB
232s Hash parameters computed in 0.133 seconds
232s Creating storage structures: 16 entries in 256 bytes space.
232s Storage structures created in: 0.000 seconds
232s 
232s Hashing NZ_GG705117.fna forwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705117.fna backwards
232s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705117.gbk forwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705117.gbk backwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Initial hashing took: 0.004 seconds
232s Extracting anchors from hash-space.
232s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:13 2024
232s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 93%.
232s Anchor extraction completed in: 0.001 seconds
232s Total anchors: 0
232s Anchor extraction + merge time: 0.001 seconds
232s Total processing time: 0.139 seconds
232s Writing anchors...
232s Total seeds used in anchors: 16
232s Hash performance:
232s  Keys used: 16 out of 16 possible (100.00%).
232s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
232s  Average pigeons per pigeon hole: 1
232s Writing 16 repeats...Output writing finished in: 0.001 seconds
232s Total time: 0.140 seconds
232s Murasaki finished!
232s PASSED MURASAKI
232s 
232s Testing Genepare on NZ_GG705117.fna
232s 18446744073709551295
232s PASSED GENEPARSE
232s 
232s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
232s Testing mbfa on NZ_GG705117.fna
232s PASSED mbfa
232s 
232s Test Murasaki on NZ_GG705118.fna
232s Verbosity level is: 0
232s Writing to: output/test
232s Pattern is: 101
232s Max usable hash bits: 27
232s Hit filter is: 0
232s Hash table type is: EcoHash
232s Hashing every: 1 base
232s Histogram detail is: 0
232s Hashing function is: 3
232s Collision profiling is: disabled
232s Repeats are: unmasked
232s Mergefilter is at: 100
232s Random seed: 1710447493 (automatic)
232s Bitscore output: on
232s Leave status records: no
232s Join neighbors is: off
232s Target memory is: 1.24 GB
232s Retain members is: true
232s Store repeatmap? yes
232s Reverse complement data is generated on the fly
232s Rifts allowed: 0
232s Fuzzy Extension: yes
232s Score by minimum pair: yes
232s Gapped anchors: no
232s Large sequence support is: enabled => seqpos is 8 bytes
232s Murasaki version 1.68.6 (LARGESEQ)
232s Loading NZ_GG705118.fna
232s Read 665bp (665 bytesp) in 0.000 seconds (2.5 MBp/s)
232s Done with forward strand (665bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705118.fna loaded. 665 bytes
232s Loading NZ_GG705118.gbk
232s Read 665bp (665 bytesp) in 0.000 seconds (2.8 MBp/s)
232s Done with forward strand (665bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705118.gbk loaded. 665 bytes
232s Sequence loading took: 0.001 seconds
232s Forward frequencies:  A:28.7218%  C:21.8045%  G:23.609%  T:25.8647%
232s Global base frequencies:  A/T:54.5865%  C/G:45.4135%
232s Pat: 3 bases long with weight 2
232s    1 101 
232s Computing hash parameters...
232s Using 4 hashbits
232s  0%......... (T -0.122 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 91%........
232s Acceptable hash function found after 1000 cycles.
232s Best uses 2/2 bases and has 0 empties from 2 inputs.
232s Score: 0.96875 (cf. worst: -4.51562)
232s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
232s Total correlation penalty: 0
232s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
232s                                             10
232s                                             ==
232s w[ 0]>>29:                                 -.C
232s w[ 0]>>30:                                  A.-
232s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
232s Ecolist (optimistic): Expcted entries per list: 8
232s Ecolist (optimistic): Minimum chunks per list: 4
232s Would take minimum 256.000000 bytes to make perfect hash.
232s Hashing 2.60 KB of sequence requires: 
232s  ~ linear (in seq length) hashing cost of 4.21 KB
232s  ~ linear (in seq length) expected anchor cost of 62.34 KB
232s Initial hash table uses: 256 bytes (4 bits, 16 entries)
232s Expected memory usage (without anchors): 4.46 KB
232s Expected memory usage (with anchors): 66.81 KB
232s Hash parameters computed in 0.132 seconds
232s Creating storage structures: 16 entries in 256 bytes space.
232s Storage structures created in: 0.000 seconds
232s 
232s Hashing NZ_GG705118.fna forwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705118.fna backwards
232s  0%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705118.gbk forwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705118.gbk backwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Initial hashing took: 0.004 seconds
232s Extracting anchors from hash-space.
232s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 93%.
232s Anchor extraction completed in: 0.002 seconds
232s Total anchors: 0
232s Anchor extraction + merge time: 0.002 seconds
232s Total processing time: 0.140 seconds
232s Writing anchors...
232s Total seeds used in anchors: 16
232s Hash performance:
232s  Keys used: 16 out of 16 possible (100.00%).
232s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
232s  Average pigeons per pigeon hole: 1
232s Writing 16 repeats...Output writing finished in: 0.002 seconds
232s Total time: 0.141 seconds
232s Murasaki finished!
232s PASSED MURASAKI
232s 
232s Testing Genepare on NZ_GG705118.fna
232s 18446744073709551282
232s PASSED GENEPARSE
232s 
232s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
232s Testing mbfa on NZ_GG705118.fna
232s PASSED mbfa
232s 
232s Test Murasaki on NZ_GG705119.fna
232s Verbosity level is: 0
232s Writing to: output/test
232s Pattern is: 101
232s Max usable hash bits: 27
232s Hit filter is: 0
232s Hash table type is: EcoHash
232s Hashing every: 1 base
232s Histogram detail is: 0
232s Hashing function is: 3
232s Collision profiling is: disabled
232s Repeats are: unmasked
232s Mergefilter is at: 100
232s Random seed: 1710447493 (automatic)
232s Bitscore output: on
232s Leave status records: no
232s Join neighbors is: off
232s Target memory is: 1.24 GB
232s Retain members is: true
232s Store repeatmap? yes
232s Reverse complement data is generated on the fly
232s Rifts allowed: 0
232s Fuzzy Extension: yes
232s Score by minimum pair: yes
232s Gapped anchors: no
232s Large sequence support is: enabled => seqpos is 8 bytes
232s Murasaki version 1.68.6 (LARGESEQ)
232s Loading NZ_GG705119.fna
232s Read 655bp (655 bytesp) in 0.000 seconds (2.5 MBp/s)
232s Done with forward strand (655bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705119.fna loaded. 655 bytes
232s Loading NZ_GG705119.gbk
232s Read 655bp (655 bytesp) in 0.000 seconds (2.8 MBp/s)
232s Done with forward strand (655bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705119.gbk loaded. 655 bytes
232s Sequence loading took: 0.001 seconds
232s Forward frequencies:  A:30.3817%  C:21.9847%  G:22.5954%  T:25.0382%
232s Global base frequencies:  A/T:55.4198%  C/G:44.5802%
232s Pat: 3 bases long with weight 2
232s    1 101 
232s Computing hash parameters...
232s Using 4 hashbits
232s  0%......... (T -0.119 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.106 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 91%........
232s Acceptable hash function found after 1000 cycles.
232s Best uses 2/2 bases and has 0 empties from 2 inputs.
232s Score: 0.96875 (cf. worst: -4.51562)
232s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
232s Total correlation penalty: 0
232s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
232s                                             10
232s                                             ==
232s w[ 0]>>29:                                 -.C
232s w[ 0]>>30:                                  A.-
232s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
232s Ecolist (optimistic): Expcted entries per list: 8
232s Ecolist (optimistic): Minimum chunks per list: 4
232s Would take minimum 256.000000 bytes to make perfect hash.
232s Hashing 2.56 KB of sequence requires: 
232s  ~ linear (in seq length) hashing cost of 4.15 KB
232s  ~ linear (in seq length) expected anchor cost of 61.41 KB
232s Initial hash table uses: 256 bytes (4 bits, 16 entries)
232s Expected memory usage (without anchors): 4.40 KB
232s Expected memory usage (with anchors): 65.81 KB
232s Hash parameters computed in 0.133 seconds
232s Creating storage structures: 16 entries in 256 bytes space.
232s Storage structures created in: 0.000 seconds
232s 
232s Hashing NZ_GG705119.fna forwards
232s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705119.fna backwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705119.gbk forwards
232s  0%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705119.gbk backwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Initial hashing took: 0.005 seconds
232s Extracting anchors from hash-space.
232s  (T -0.002 seconds) ETA: Thu Mar 14 20:18:13 2024
232s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 93%.
232s Anchor extraction completed in: 0.001 seconds
232s Total anchors: 0
232s Anchor extraction + merge time: 0.001 seconds
232s Total processing time: 0.140 seconds
232s Writing anchors...
232s Total seeds used in anchors: 16
232s Hash performance:
232s  Keys used: 16 out of 16 possible (100.00%).
232s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
232s  Average pigeons per pigeon hole: 1
232s Writing 16 repeats...Output writing finished in: 0.001 seconds
232s Total time: 0.141 seconds
232s Murasaki finished!
232s PASSED MURASAKI
232s 
232s Testing Genepare on NZ_GG705119.fna
232s 18446744073709551272
232s PASSED GENEPARSE
232s 
232s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
232s Testing mbfa on NZ_GG705119.fna
232s PASSED mbfa
232s 
232s Test Murasaki on NZ_GG705120.fna
232s Verbosity level is: 0
232s Writing to: output/test
232s Pattern is: 101
232s Max usable hash bits: 27
232s Hit filter is: 0
232s Hash table type is: EcoHash
232s Hashing every: 1 base
232s Histogram detail is: 0
232s Hashing function is: 3
232s Collision profiling is: disabled
232s Repeats are: unmasked
232s Mergefilter is at: 100
232s Random seed: 1710447493 (automatic)
232s Bitscore output: on
232s Leave status records: no
232s Join neighbors is: off
232s Target memory is: 1.24 GB
232s Retain members is: true
232s Store repeatmap? yes
232s Reverse complement data is generated on the fly
232s Rifts allowed: 0
232s Fuzzy Extension: yes
232s Score by minimum pair: yes
232s Gapped anchors: no
232s Large sequence support is: enabled => seqpos is 8 bytes
232s Murasaki version 1.68.6 (LARGESEQ)
232s Loading NZ_GG705120.fna
232s Read 638bp (638 bytesp) in 0.000 seconds (2.3 MBp/s)
232s Done with forward strand (638bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705120.fna loaded. 638 bytes
232s Loading NZ_GG705120.gbk
232s Read 638bp (638 bytesp) in 0.000 seconds (2.7 MBp/s)
232s Done with forward strand (638bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705120.gbk loaded. 638 bytes
232s Sequence loading took: 0.001 seconds
232s Forward frequencies:  A:23.511%  C:22.7273%  G:24.9216%  T:28.8401%
232s Global base frequencies:  A/T:52.3511%  C/G:47.6489%
232s Pat: 3 bases long with weight 2
232s    1 101 
232s Computing hash parameters...
232s Using 4 hashbits
232s  0%......... (T -0.120 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.106 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 91%........
232s Acceptable hash function found after 1000 cycles.
232s Best uses 2/2 bases and has 0 empties from 2 inputs.
232s Score: 0.96875 (cf. worst: -4.51562)
232s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
232s Total correlation penalty: 0
232s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
232s                                             10
232s                                             ==
232s w[ 0]>>29:                                 -.C
232s w[ 0]>>30:                                  A.-
232s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
232s Ecolist (optimistic): Expcted entries per list: 8
232s Ecolist (optimistic): Minimum chunks per list: 4
232s Would take minimum 256.000000 bytes to make perfect hash.
232s Hashing 2.49 KB of sequence requires: 
232s  ~ linear (in seq length) hashing cost of 4.05 KB
232s  ~ linear (in seq length) expected anchor cost of 59.81 KB
232s Initial hash table uses: 256 bytes (4 bits, 16 entries)
232s Expected memory usage (without anchors): 4.30 KB
232s Expected memory usage (with anchors): 64.11 KB
232s Hash parameters computed in 0.131 seconds
232s Creating storage structures: 16 entries in 256 bytes space.
232s Storage structures created in: 0.000 seconds
232s 
232s Hashing NZ_GG705120.fna forwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705120.fna backwards
232s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705120.gbk forwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Hashing NZ_GG705120.gbk backwards
232s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 90%........
232s Initial hashing took: 0.004 seconds
232s Extracting anchors from hash-space.
232s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:13 2024
232s 93%.
232s Anchor extraction completed in: 0.001 seconds
232s Total anchors: 0
232s Anchor extraction + merge time: 0.001 seconds
232s Total processing time: 0.137 seconds
232s Writing anchors...
232s Total seeds used in anchors: 16
232s Hash performance:
232s  Keys used: 16 out of 16 possible (100.00%).
232s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
232s  Average pigeons per pigeon hole: 1
232s Writing 16 repeats...Output writing finished in: 0.001 seconds
232s Total time: 0.139 seconds
232s Murasaki finished!
232s PASSED MURASAKI
232s 
232s Testing Genepare on NZ_GG705120.fna
232s 18446744073709551255
232s PASSED GENEPARSE
232s 
232s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
232s Testing mbfa on NZ_GG705120.fna
232s PASSED mbfa
232s 
232s Test Murasaki on NZ_GG705121.fna
232s Verbosity level is: 0
232s Writing to: output/test
232s Pattern is: 101
232s Max usable hash bits: 27
232s Hit filter is: 0
232s Hash table type is: EcoHash
232s Hashing every: 1 base
232s Histogram detail is: 0
232s Hashing function is: 3
232s Collision profiling is: disabled
232s Repeats are: unmasked
232s Mergefilter is at: 100
232s Random seed: 1710447493 (automatic)
232s Bitscore output: on
232s Leave status records: no
232s Join neighbors is: off
232s Target memory is: 1.24 GB
232s Retain members is: true
232s Store repeatmap? yes
232s Reverse complement data is generated on the fly
232s Rifts allowed: 0
232s Fuzzy Extension: yes
232s Score by minimum pair: yes
232s Gapped anchors: no
232s Large sequence support is: enabled => seqpos is 8 bytes
232s Murasaki version 1.68.6 (LARGESEQ)
232s Loading NZ_GG705121.fna
232s Read 615bp (615 bytesp) in 0.000 seconds (2.4 MBp/s)
232s Done with forward strand (615bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705121.fna loaded. 615 bytes
232s Loading NZ_GG705121.gbk
232s Read 615bp (615 bytesp) in 0.000 seconds (1.5 MBp/s)
232s Done with forward strand (615bp). Preparing reverse complement...
232s  <-> Reversing metdata.
232s Done.
232s Seq NZ_GG705121.gbk loaded. 615 bytes
232s Sequence loading took: 0.001 seconds
232s Forward frequencies:  A:33.8211%  C:18.374%  G:17.8862%  T:29.9187%
232s Global base frequencies:  A/T:63.7398%  C/G:36.2602%
232s Pat: 3 bases long with weight 2
232s    1 101 
232s Computing hash parameters...
232s Using 4 hashbits
232s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:14 2024
232s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:14 2024
232s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:14 2024
232s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:14 2024
232s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:14 2024
232s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%........
233s Acceptable hash function found after 1000 cycles.
233s Best uses 2/2 bases and has 0 empties from 2 inputs.
233s Score: 0.96875 (cf. worst: -4.51562)
233s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
233s Total correlation penalty: 0
233s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
233s                                             10
233s                                             ==
233s w[ 0]>>29:                                 -.C
233s w[ 0]>>30:                                  A.-
233s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
233s Ecolist (optimistic): Expcted entries per list: 8
233s Ecolist (optimistic): Minimum chunks per list: 4
233s Would take minimum 256.000000 bytes to make perfect hash.
233s Hashing 2.40 KB of sequence requires: 
233s  ~ linear (in seq length) hashing cost of 3.90 KB
233s  ~ linear (in seq length) expected anchor cost of 57.66 KB
233s Initial hash table uses: 256 bytes (4 bits, 16 entries)
233s Expected memory usage (without anchors): 4.15 KB
233s Expected memory usage (with anchors): 61.80 KB
233s Hash parameters computed in 0.133 seconds
233s Creating storage structures: 16 entries in 256 bytes space.
233s Storage structures created in: 0.000 seconds
233s 
233s Hashing NZ_GG705121.fna forwards
233s  0%........ (T -0.006 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.006 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.004 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.003 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Hashing NZ_GG705121.fna backwards
233s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Hashing NZ_GG705121.gbk forwards
233s  0%........ (T -0.003 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Hashing NZ_GG705121.gbk backwards
233s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Initial hashing took: 0.004 seconds
233s Extracting anchors from hash-space.
233s  (T -0.003 seconds) ETA: Thu Mar 14 20:18:14 2024
233s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 93%.
233s Anchor extraction completed in: 0.001 seconds
233s Total anchors: 0
233s Anchor extraction + merge time: 0.001 seconds
233s Total processing time: 0.140 seconds
233s Writing anchors...
233s Total seeds used in anchors: 16
233s Hash performance:
233s  Keys used: 16 out of 16 possible (100.00%).
233s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
233s  Average pigeons per pigeon hole: 1
233s Writing 16 repeats...Output writing finished in: 0.001 seconds
233s Total time: 0.141 seconds
233s Murasaki finished!
233s PASSED MURASAKI
233s 
233s Testing Genepare on NZ_GG705121.fna
233s 18446744073709551232
233s PASSED GENEPARSE
233s 
233s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
233s Testing mbfa on NZ_GG705121.fna
233s PASSED mbfa
233s 
233s Test Murasaki on NZ_GG705122.fna
233s Verbosity level is: 0
233s Writing to: output/test
233s Pattern is: 101
233s Max usable hash bits: 27
233s Hit filter is: 0
233s Hash table type is: EcoHash
233s Hashing every: 1 base
233s Histogram detail is: 0
233s Hashing function is: 3
233s Collision profiling is: disabled
233s Repeats are: unmasked
233s Mergefilter is at: 100
233s Random seed: 1710447494 (automatic)
233s Bitscore output: on
233s Leave status records: no
233s Join neighbors is: off
233s Target memory is: 1.24 GB
233s Retain members is: true
233s Store repeatmap? yes
233s Reverse complement data is generated on the fly
233s Rifts allowed: 0
233s Fuzzy Extension: yes
233s Score by minimum pair: yes
233s Gapped anchors: no
233s Large sequence support is: enabled => seqpos is 8 bytes
233s Murasaki version 1.68.6 (LARGESEQ)
233s Loading NZ_GG705122.fna
233s Read 603bp (603 bytesp) in 0.000 seconds (2.1 MBp/s)
233s Done with forward strand (603bp). Preparing reverse complement...
233s  <-> Reversing metdata.
233s Done.
233s Seq NZ_GG705122.fna loaded. 603 bytes
233s Loading NZ_GG705122.gbk
233s Read 603bp (603 bytesp) in 0.000 seconds (2.6 MBp/s)
233s Done with forward strand (603bp). Preparing reverse complement...
233s  <-> Reversing metdata.
233s Done.
233s Seq NZ_GG705122.gbk loaded. 603 bytes
233s Sequence loading took: 0.001 seconds
233s Forward frequencies:  A:30.8458%  C:18.2421%  G:20.8955%  T:30.0166%
233s Global base frequencies:  A/T:60.8624%  C/G:39.1376%
233s Pat: 3 bases long with weight 2
233s    1 101 
233s Computing hash parameters...
233s Using 4 hashbits
233s  0%......... (T -0.119 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%........
233s Acceptable hash function found after 1000 cycles.
233s Best uses 2/2 bases and has 0 empties from 2 inputs.
233s Score: 0.96875 (cf. worst: -4.51562)
233s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
233s Total correlation penalty: 0
233s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
233s                                             10
233s                                             ==
233s w[ 0]>>29:                                 -.C
233s w[ 0]>>30:                                  A.-
233s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
233s Ecolist (optimistic): Expcted entries per list: 8
233s Ecolist (optimistic): Minimum chunks per list: 4
233s Would take minimum 256.000000 bytes to make perfect hash.
233s Hashing 2.36 KB of sequence requires: 
233s  ~ linear (in seq length) hashing cost of 3.82 KB
233s  ~ linear (in seq length) expected anchor cost of 56.53 KB
233s Initial hash table uses: 256 bytes (4 bits, 16 entries)
233s Expected memory usage (without anchors): 4.07 KB
233s Expected memory usage (with anchors): 60.60 KB
233s Hash parameters computed in 0.133 seconds
233s Creating storage structures: 16 entries in 256 bytes space.
233s Storage structures created in: 0.000 seconds
233s 
233s Hashing NZ_GG705122.fna forwards
233s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Hashing NZ_GG705122.fna backwards
233s  0%........ (T -0.005 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Hashing NZ_GG705122.gbk forwards
233s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Hashing NZ_GG705122.gbk backwards
233s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Initial hashing took: 0.004 seconds
233s Extracting anchors from hash-space.
233s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 93%.
233s Anchor extraction completed in: 0.001 seconds
233s Total anchors: 0
233s Anchor extraction + merge time: 0.001 seconds
233s Total processing time: 0.139 seconds
233s Writing anchors...
233s Total seeds used in anchors: 16
233s Hash performance:
233s  Keys used: 16 out of 16 possible (100.00%).
233s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
233s  Average pigeons per pigeon hole: 1
233s Writing 16 repeats...Output writing finished in: 0.001 seconds
233s Total time: 0.139 seconds
233s Murasaki finished!
233s PASSED MURASAKI
233s 
233s Testing Genepare on NZ_GG705122.fna
233s 18446744073709551220
233s PASSED GENEPARSE
233s 
233s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
233s Testing mbfa on NZ_GG705122.fna
233s PASSED mbfa
233s 
233s Test Murasaki on NZ_GG705123.fna
233s Verbosity level is: 0
233s Writing to: output/test
233s Pattern is: 101
233s Max usable hash bits: 27
233s Hit filter is: 0
233s Hash table type is: EcoHash
233s Hashing every: 1 base
233s Histogram detail is: 0
233s Hashing function is: 3
233s Collision profiling is: disabled
233s Repeats are: unmasked
233s Mergefilter is at: 100
233s Random seed: 1710447494 (automatic)
233s Bitscore output: on
233s Leave status records: no
233s Join neighbors is: off
233s Target memory is: 1.24 GB
233s Retain members is: true
233s Store repeatmap? yes
233s Reverse complement data is generated on the fly
233s Rifts allowed: 0
233s Fuzzy Extension: yes
233s Score by minimum pair: yes
233s Gapped anchors: no
233s Large sequence support is: enabled => seqpos is 8 bytes
233s Murasaki version 1.68.6 (LARGESEQ)
233s Loading NZ_GG705123.fna
233s Read 603bp (603 bytesp) in 0.000 seconds (1.5 MBp/s)
233s Done with forward strand (603bp). Preparing reverse complement...
233s  <-> Reversing metdata.
233s Done.
233s Seq NZ_GG705123.fna loaded. 603 bytes
233s Loading NZ_GG705123.gbk
233s Read 603bp (603 bytesp) in 0.000 seconds (2.1 MBp/s)
233s Done with forward strand (603bp). Preparing reverse complement...
233s  <-> Reversing metdata.
233s Done.
233s Seq NZ_GG705123.gbk loaded. 603 bytes
233s Sequence loading took: 0.001 seconds
233s Forward frequencies:  A:30.6799%  C:18.0763%  G:20.5638%  T:30.6799%
233s Global base frequencies:  A/T:61.3599%  C/G:38.6401%
233s Pat: 3 bases long with weight 2
233s    1 101 
233s Computing hash parameters...
233s Using 4 hashbits
233s  0%......... (T -0.124 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%........
233s Acceptable hash function found after 1000 cycles.
233s Best uses 2/2 bases and has 0 empties from 2 inputs.
233s Score: 0.96875 (cf. worst: -4.51562)
233s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
233s Total correlation penalty: 0
233s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
233s                                             10
233s                                             ==
233s w[ 0]>>29:                                 -.C
233s w[ 0]>>30:                                  A.-
233s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
233s Ecolist (optimistic): Expcted entries per list: 8
233s Ecolist (optimistic): Minimum chunks per list: 4
233s Would take minimum 256.000000 bytes to make perfect hash.
233s Hashing 2.36 KB of sequence requires: 
233s  ~ linear (in seq length) hashing cost of 3.82 KB
233s  ~ linear (in seq length) expected anchor cost of 56.53 KB
233s Initial hash table uses: 256 bytes (4 bits, 16 entries)
233s Expected memory usage (without anchors): 4.07 KB
233s Expected memory usage (with anchors): 60.60 KB
233s Hash parameters computed in 0.137 seconds
233s Creating storage structures: 16 entries in 256 bytes space.
233s Storage structures created in: 0.000 seconds
233s 
233s Hashing NZ_GG705123.fna forwards
233s  0%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Hashing NZ_GG705123.fna backwards
233s  0%........ (T -0.006 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.003 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Hashing NZ_GG705123.gbk forwards
233s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Hashing NZ_GG705123.gbk backwards
233s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%.......
233s Initial hashing took: 0.003 seconds
233s Extracting anchors from hash-space.
233s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s  6%. (T -0.003 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 18%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 31%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 43%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 56%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 93%.
233s Anchor extraction completed in: 0.003 seconds
233s Total anchors: 0
233s Anchor extraction + merge time: 0.003 seconds
233s Total processing time: 0.143 seconds
233s Writing anchors...
233s Total seeds used in anchors: 16
233s Hash performance:
233s  Keys used: 16 out of 16 possible (100.00%).
233s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
233s  Average pigeons per pigeon hole: 1
233s Writing 16 repeats...Output writing finished in: 0.001 seconds
233s Total time: 0.144 seconds
233s Murasaki finished!
233s PASSED MURASAKI
233s 
233s Testing Genepare on NZ_GG705123.fna
233s 18446744073709551220
233s PASSED GENEPARSE
233s 
233s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
233s Testing mbfa on NZ_GG705123.fna
233s PASSED mbfa
233s 
233s Test Murasaki on NZ_GG705124.fna
233s Verbosity level is: 0
233s Writing to: output/test
233s Pattern is: 101
233s Max usable hash bits: 27
233s Hit filter is: 0
233s Hash table type is: EcoHash
233s Hashing every: 1 base
233s Histogram detail is: 0
233s Hashing function is: 3
233s Collision profiling is: disabled
233s Repeats are: unmasked
233s Mergefilter is at: 100
233s Random seed: 1710447494 (automatic)
233s Bitscore output: on
233s Leave status records: no
233s Join neighbors is: off
233s Target memory is: 1.24 GB
233s Retain members is: true
233s Store repeatmap? yes
233s Reverse complement data is generated on the fly
233s Rifts allowed: 0
233s Fuzzy Extension: yes
233s Score by minimum pair: yes
233s Gapped anchors: no
233s Large sequence support is: enabled => seqpos is 8 bytes
233s Murasaki version 1.68.6 (LARGESEQ)
233s Loading NZ_GG705124.fna
233s Read 597bp (597 bytesp) in 0.000 seconds (2.1 MBp/s)
233s Done with forward strand (597bp). Preparing reverse complement...
233s  <-> Reversing metdata.
233s Done.
233s Seq NZ_GG705124.fna loaded. 597 bytes
233s Loading NZ_GG705124.gbk
233s Read 597bp (597 bytesp) in 0.000 seconds (2.3 MBp/s)
233s Done with forward strand (597bp). Preparing reverse complement...
233s  <-> Reversing metdata.
233s Done.
233s Seq NZ_GG705124.gbk loaded. 597 bytes
233s Sequence loading took: 0.001 seconds
233s Forward frequencies:  A:38.6935%  C:10.8878%  G:20.268%  T:30.1508%
233s Global base frequencies:  A/T:68.8442%  C/G:31.1558%
233s Pat: 3 bases long with weight 2
233s    1 101 
233s Computing hash parameters...
233s Using 4 hashbits
233s  0%......... (T -0.128 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.116 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.100 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.085 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.070 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.056 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.041 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%........
233s Acceptable hash function found after 1000 cycles.
233s Best uses 2/2 bases and has 0 empties from 2 inputs.
233s Score: 0.96875 (cf. worst: -4.51562)
233s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
233s Total correlation penalty: 0
233s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
233s                                             10
233s                                             ==
233s w[ 0]>>29:                                 -.C
233s w[ 0]>>30:                                  A.-
233s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
233s Ecolist (optimistic): Expcted entries per list: 8
233s Ecolist (optimistic): Minimum chunks per list: 4
233s Would take minimum 256.000000 bytes to make perfect hash.
233s Hashing 2.33 KB of sequence requires: 
233s  ~ linear (in seq length) hashing cost of 3.78 KB
233s  ~ linear (in seq length) expected anchor cost of 55.97 KB
233s Initial hash table uses: 256 bytes (4 bits, 16 entries)
233s Expected memory usage (without anchors): 4.03 KB
233s Expected memory usage (with anchors): 60.00 KB
233s Hash parameters computed in 0.137 seconds
233s Creating storage structures: 16 entries in 256 bytes space.
233s Storage structures created in: 0.001 seconds
233s 
233s Hashing NZ_GG705124.fna forwards
233s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 90%........
233s Hashing NZ_GG705124.fna backwards
233s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 90%........
233s Hashing NZ_GG705124.gbk forwards
233s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 90%........
233s Hashing NZ_GG705124.gbk backwards
233s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 90%........
233s Initial hashing took: 0.004 seconds
233s Extracting anchors from hash-space.
233s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 93%.
233s Anchor extraction completed in: 0.001 seconds
233s Total anchors: 0
233s Anchor extraction + merge time: 0.001 seconds
233s Total processing time: 0.144 seconds
233s Writing anchors...
233s Total seeds used in anchors: 16
233s Hash performance:
233s  Keys used: 16 out of 16 possible (100.00%).
233s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
233s  Average pigeons per pigeon hole: 1
233s Writing 16 repeats...Output writing finished in: 0.001 seconds
233s Total time: 0.145 seconds
233s Murasaki finished!
233s PASSED MURASAKI
233s 
233s Testing Genepare on NZ_GG705124.fna
233s 18446744073709551214
233s PASSED GENEPARSE
233s 
233s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
233s Testing mbfa on NZ_GG705124.fna
233s PASSED mbfa
233s 
233s Test Murasaki on NZ_GG705125.fna
233s Verbosity level is: 0
233s Writing to: output/test
233s Pattern is: 101
233s Max usable hash bits: 27
233s Hit filter is: 0
233s Hash table type is: EcoHash
233s Hashing every: 1 base
233s Histogram detail is: 0
233s Hashing function is: 3
233s Collision profiling is: disabled
233s Repeats are: unmasked
233s Mergefilter is at: 100
233s Random seed: 1710447494 (automatic)
233s Bitscore output: on
233s Leave status records: no
233s Join neighbors is: off
233s Target memory is: 1.24 GB
233s Retain members is: true
233s Store repeatmap? yes
233s Reverse complement data is generated on the fly
233s Rifts allowed: 0
233s Fuzzy Extension: yes
233s Score by minimum pair: yes
233s Gapped anchors: no
233s Large sequence support is: enabled => seqpos is 8 bytes
233s Murasaki version 1.68.6 (LARGESEQ)
233s Loading NZ_GG705125.fna
233s Read 583bp (583 bytesp) in 0.000 seconds (2.3 MBp/s)
233s Done with forward strand (583bp). Preparing reverse complement...
233s  <-> Reversing metdata.
233s Done.
233s Seq NZ_GG705125.fna loaded. 583 bytes
233s Loading NZ_GG705125.gbk
233s Read 583bp (583 bytesp) in 0.000 seconds (2.4 MBp/s)
233s Done with forward strand (583bp). Preparing reverse complement...
233s  <-> Reversing metdata.
233s Done.
233s Seq NZ_GG705125.gbk loaded. 583 bytes
233s Sequence loading took: 0.001 seconds
233s Forward frequencies:  A:27.7873%  C:20.5832%  G:18.8679%  T:32.7616%
233s Global base frequencies:  A/T:60.5489%  C/G:39.4511%
233s Pat: 3 bases long with weight 2
233s    1 101 
233s Computing hash parameters...
233s Using 4 hashbits
233s  0%......... (T -0.122 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.110 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%........
233s Acceptable hash function found after 1000 cycles.
233s Best uses 2/2 bases and has 0 empties from 2 inputs.
233s Score: 0.96875 (cf. worst: -4.51562)
233s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
233s Total correlation penalty: 0
233s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
233s                                             10
233s                                             ==
233s w[ 0]>>29:                                 -.C
233s w[ 0]>>30:                                  A.-
233s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
233s Ecolist (optimistic): Expcted entries per list: 8
233s Ecolist (optimistic): Minimum chunks per list: 4
233s Would take minimum 256.000000 bytes to make perfect hash.
233s Hashing 2.28 KB of sequence requires: 
233s  ~ linear (in seq length) hashing cost of 3.69 KB
233s  ~ linear (in seq length) expected anchor cost of 54.66 KB
233s Initial hash table uses: 256 bytes (4 bits, 16 entries)
233s Expected memory usage (without anchors): 3.94 KB
233s Expected memory usage (with anchors): 58.60 KB
233s Hash parameters computed in 0.135 seconds
233s Creating storage structures: 16 entries in 256 bytes space.
233s Storage structures created in: 0.000 seconds
233s 
233s Hashing NZ_GG705125.fna forwards
233s  0%......... (T -0.005 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%........
233s Hashing NZ_GG705125.fna backwards
233s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%........
233s Hashing NZ_GG705125.gbk forwards
233s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%........
233s Hashing NZ_GG705125.gbk backwards
233s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 71%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%........
233s Initial hashing took: 0.003 seconds
233s Extracting anchors from hash-space.
233s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 93%.
233s Anchor extraction completed in: 0.001 seconds
233s Total anchors: 0
233s Anchor extraction + merge time: 0.001 seconds
233s Total processing time: 0.140 seconds
233s Writing anchors...
233s Total seeds used in anchors: 16
233s Hash performance:
233s  Keys used: 16 out of 16 possible (100.00%).
233s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
233s  Average pigeons per pigeon hole: 1
233s Writing 16 repeats...Output writing finished in: 0.001 seconds
233s Total time: 0.141 seconds
233s Murasaki finished!
233s PASSED MURASAKI
233s 
233s Testing Genepare on NZ_GG705125.fna
233s 18446744073709551200
233s PASSED GENEPARSE
233s 
233s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
233s Testing mbfa on NZ_GG705125.fna
233s PASSED mbfa
233s 
233s Test Murasaki on NZ_GG705126.fna
233s Verbosity level is: 0
233s Writing to: output/test
233s Pattern is: 101
233s Max usable hash bits: 27
233s Hit filter is: 0
233s Hash table type is: EcoHash
233s Hashing every: 1 base
233s Histogram detail is: 0
233s Hashing function is: 3
233s Collision profiling is: disabled
233s Repeats are: unmasked
233s Mergefilter is at: 100
233s Random seed: 1710447494 (automatic)
233s Bitscore output: on
233s Leave status records: no
233s Join neighbors is: off
233s Target memory is: 1.24 GB
233s Retain members is: true
233s Store repeatmap? yes
233s Reverse complement data is generated on the fly
233s Rifts allowed: 0
233s Fuzzy Extension: yes
233s Score by minimum pair: yes
233s Gapped anchors: no
233s Large sequence support is: enabled => seqpos is 8 bytes
233s Murasaki version 1.68.6 (LARGESEQ)
233s Loading NZ_GG705126.fna
233s Read 559bp (559 bytesp) in 0.000 seconds (1.4 MBp/s)
233s Done with forward strand (559bp). Preparing reverse complement...
233s  <-> Reversing metdata.
233s Done.
233s Seq NZ_GG705126.fna loaded. 559 bytes
233s Loading NZ_GG705126.gbk
233s Read 559bp (559 bytesp) in 0.000 seconds (1.9 MBp/s)
233s Done with forward strand (559bp). Preparing reverse complement...
233s  <-> Reversing metdata.
233s Done.
233s Seq NZ_GG705126.gbk loaded. 559 bytes
233s Sequence loading took: 0.001 seconds
233s Forward frequencies:  A:37.3882%  C:13.9535%  G:15.2057%  T:33.4526%
233s Global base frequencies:  A/T:70.8408%  C/G:29.1592%
233s Pat: 3 bases long with weight 2
233s    1 101 
233s Computing hash parameters...
233s Using 4 hashbits
233s  0%......... (T -0.122 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.107 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.081 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.054 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 91%........
233s Acceptable hash function found after 1000 cycles.
233s Best uses 2/2 bases and has 0 empties from 2 inputs.
233s Score: 0.96875 (cf. worst: -4.51562)
233s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
233s Total correlation penalty: 0
233s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
233s                                             10
233s                                             ==
233s w[ 0]>>29:                                 -.C
233s w[ 0]>>30:                                  A.-
233s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
233s Ecolist (optimistic): Expcted entries per list: 8
233s Ecolist (optimistic): Minimum chunks per list: 4
233s Would take minimum 256.000000 bytes to make perfect hash.
233s Hashing 2.18 KB of sequence requires: 
233s  ~ linear (in seq length) hashing cost of 3.54 KB
233s  ~ linear (in seq length) expected anchor cost of 52.41 KB
233s Initial hash table uses: 256 bytes (4 bits, 16 entries)
233s Expected memory usage (without anchors): 3.79 KB
233s Expected memory usage (with anchors): 56.20 KB
233s Hash parameters computed in 0.134 seconds
233s Creating storage structures: 16 entries in 256 bytes space.
233s Storage structures created in: 0.000 seconds
233s 
233s Hashing NZ_GG705126.fna forwards
233s  0%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 90%........
233s Hashing NZ_GG705126.fna backwards
233s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 90%........
233s Hashing NZ_GG705126.gbk forwards
233s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 90%........
233s Hashing NZ_GG705126.gbk backwards
233s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 90%........
233s Initial hashing took: 0.003 seconds
233s Extracting anchors from hash-space.
233s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:14 2024
233s 93%.
233s Anchor extraction completed in: 0.001 seconds
233s Total anchors: 0
233s Anchor extraction + merge time: 0.001 seconds
233s Total processing time: 0.140 seconds
233s Writing anchors...
233s Total seeds used in anchors: 16
233s Hash performance:
233s  Keys used: 16 out of 16 possible (100.00%).
233s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
233s  Average pigeons per pigeon hole: 1
233s Writing 16 repeats...Output writing finished in: 0.001 seconds
233s Total time: 0.141 seconds
233s Murasaki finished!
233s PASSED MURASAKI
233s 
233s Testing Genepare on NZ_GG705126.fna
233s 18446744073709551176
233s PASSED GENEPARSE
233s 
234s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
234s Testing mbfa on NZ_GG705126.fna
234s PASSED mbfa
234s 
234s Test Murasaki on NZ_GG705127.fna
234s Verbosity level is: 0
234s Writing to: output/test
234s Pattern is: 101
234s Max usable hash bits: 27
234s Hit filter is: 0
234s Hash table type is: EcoHash
234s Hashing every: 1 base
234s Histogram detail is: 0
234s Hashing function is: 3
234s Collision profiling is: disabled
234s Repeats are: unmasked
234s Mergefilter is at: 100
234s Random seed: 1710447494 (automatic)
234s Bitscore output: on
234s Leave status records: no
234s Join neighbors is: off
234s Target memory is: 1.24 GB
234s Retain members is: true
234s Store repeatmap? yes
234s Reverse complement data is generated on the fly
234s Rifts allowed: 0
234s Fuzzy Extension: yes
234s Score by minimum pair: yes
234s Gapped anchors: no
234s Large sequence support is: enabled => seqpos is 8 bytes
234s Murasaki version 1.68.6 (LARGESEQ)
234s Loading NZ_GG705127.fna
234s Read 549bp (549 bytesp) in 0.000 seconds (2.1 MBp/s)
234s Done with forward strand (549bp). Preparing reverse complement...
234s  <-> Reversing metdata.
234s Done.
234s Seq NZ_GG705127.fna loaded. 549 bytes
234s Loading NZ_GG705127.gbk
234s Read 549bp (549 bytesp) in 0.000 seconds (2.4 MBp/s)
234s Done with forward strand (549bp). Preparing reverse complement...
234s  <-> Reversing metdata.
234s Done.
234s Seq NZ_GG705127.gbk loaded. 549 bytes
234s Sequence loading took: 0.001 seconds
234s Forward frequencies:  A:32.969%  C:20.4007%  G:20.765%  T:25.8652%
234s Global base frequencies:  A/T:58.8342%  C/G:41.1658%
234s Pat: 3 bases long with weight 2
234s    1 101 
234s Computing hash parameters...
234s Using 4 hashbits
234s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.109 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.094 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.027 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%........
234s Acceptable hash function found after 1000 cycles.
234s Best uses 2/2 bases and has 0 empties from 2 inputs.
234s Score: 0.96875 (cf. worst: -4.51562)
234s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
234s Total correlation penalty: 0
234s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
234s                                             10
234s                                             ==
234s w[ 0]>>29:                                 -.C
234s w[ 0]>>30:                                  A.-
234s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
234s Ecolist (optimistic): Expcted entries per list: 8
234s Ecolist (optimistic): Minimum chunks per list: 4
234s Would take minimum 256.000000 bytes to make perfect hash.
234s Hashing 2.14 KB of sequence requires: 
234s  ~ linear (in seq length) hashing cost of 3.48 KB
234s  ~ linear (in seq length) expected anchor cost of 51.47 KB
234s Initial hash table uses: 256 bytes (4 bits, 16 entries)
234s Expected memory usage (without anchors): 3.73 KB
234s Expected memory usage (with anchors): 55.20 KB
234s Hash parameters computed in 0.134 seconds
234s Creating storage structures: 16 entries in 256 bytes space.
234s Storage structures created in: 0.000 seconds
234s 
234s Hashing NZ_GG705127.fna forwards
234s  0%......... (T -0.007 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.003 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 90%........
234s Hashing NZ_GG705127.fna backwards
234s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 90%........
234s Hashing NZ_GG705127.gbk forwards
234s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 90%........
234s Hashing NZ_GG705127.gbk backwards
234s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 90%........
234s Initial hashing took: 0.004 seconds
234s Extracting anchors from hash-space.
234s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s  6%. (T -0.002 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 93%.
234s Anchor extraction completed in: 0.001 seconds
234s Total anchors: 0
234s Anchor extraction + merge time: 0.001 seconds
234s Total processing time: 0.140 seconds
234s Writing anchors...
234s Total seeds used in anchors: 16
234s Hash performance:
234s  Keys used: 16 out of 16 possible (100.00%).
234s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
234s  Average pigeons per pigeon hole: 1
234s Writing 16 repeats...Output writing finished in: 0.001 seconds
234s Total time: 0.140 seconds
234s Murasaki finished!
234s PASSED MURASAKI
234s 
234s Testing Genepare on NZ_GG705127.fna
234s 18446744073709551166
234s PASSED GENEPARSE
234s 
234s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
234s Testing mbfa on NZ_GG705127.fna
234s PASSED mbfa
234s 
234s Test Murasaki on NZ_GG705128.fna
234s Verbosity level is: 0
234s Writing to: output/test
234s Pattern is: 101
234s Max usable hash bits: 27
234s Hit filter is: 0
234s Hash table type is: EcoHash
234s Hashing every: 1 base
234s Histogram detail is: 0
234s Hashing function is: 3
234s Collision profiling is: disabled
234s Repeats are: unmasked
234s Mergefilter is at: 100
234s Random seed: 1710447495 (automatic)
234s Bitscore output: on
234s Leave status records: no
234s Join neighbors is: off
234s Target memory is: 1.24 GB
234s Retain members is: true
234s Store repeatmap? yes
234s Reverse complement data is generated on the fly
234s Rifts allowed: 0
234s Fuzzy Extension: yes
234s Score by minimum pair: yes
234s Gapped anchors: no
234s Large sequence support is: enabled => seqpos is 8 bytes
234s Murasaki version 1.68.6 (LARGESEQ)
234s Loading NZ_GG705128.fna
234s Read 548bp (548 bytesp) in 0.000 seconds (2.1 MBp/s)
234s Done with forward strand (548bp). Preparing reverse complement...
234s  <-> Reversing metdata.
234s Done.
234s Seq NZ_GG705128.fna loaded. 548 bytes
234s Loading NZ_GG705128.gbk
234s Read 548bp (548 bytesp) in 0.000 seconds (2.4 MBp/s)
234s Done with forward strand (548bp). Preparing reverse complement...
234s  <-> Reversing metdata.
234s Done.
234s Seq NZ_GG705128.gbk loaded. 548 bytes
234s Sequence loading took: 0.001 seconds
234s Forward frequencies:  A:31.9343%  C:19.5255%  G:21.7153%  T:26.8248%
234s Global base frequencies:  A/T:58.7591%  C/G:41.2409%
234s Pat: 3 bases long with weight 2
234s    1 101 
234s Computing hash parameters...
234s Using 4 hashbits
234s  0%......... (T -0.121 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.093 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.079 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.066 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.039 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%........
234s Acceptable hash function found after 1000 cycles.
234s Best uses 2/2 bases and has 0 empties from 2 inputs.
234s Score: 0.96875 (cf. worst: -4.51562)
234s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
234s Total correlation penalty: 0
234s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
234s                                             10
234s                                             ==
234s w[ 0]>>29:                                 -.C
234s w[ 0]>>30:                                  A.-
234s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
234s Ecolist (optimistic): Expcted entries per list: 8
234s Ecolist (optimistic): Minimum chunks per list: 4
234s Would take minimum 256.000000 bytes to make perfect hash.
234s Hashing 2.14 KB of sequence requires: 
234s  ~ linear (in seq length) hashing cost of 3.48 KB
234s  ~ linear (in seq length) expected anchor cost of 51.38 KB
234s Initial hash table uses: 256 bytes (4 bits, 16 entries)
234s Expected memory usage (without anchors): 3.73 KB
234s Expected memory usage (with anchors): 55.10 KB
234s Hash parameters computed in 0.133 seconds
234s Creating storage structures: 16 entries in 256 bytes space.
234s Storage structures created in: 0.000 seconds
234s 
234s Hashing NZ_GG705128.fna forwards
234s  0%......... (T -0.006 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.004 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.002 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 90%........
234s Hashing NZ_GG705128.fna backwards
234s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 90%........
234s Hashing NZ_GG705128.gbk forwards
234s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 90%........
234s Hashing NZ_GG705128.gbk backwards
234s  0%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 90%........
234s Initial hashing took: 0.005 seconds
234s Extracting anchors from hash-space.
234s  (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s  6%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 18%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 93%.
234s Anchor extraction completed in: 0.001 seconds
234s Total anchors: 0
234s Anchor extraction + merge time: 0.001 seconds
234s Total processing time: 0.139 seconds
234s Writing anchors...
234s Total seeds used in anchors: 16
234s Hash performance:
234s  Keys used: 16 out of 16 possible (100.00%).
234s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
234s  Average pigeons per pigeon hole: 1
234s Writing 16 repeats...Output writing finished in: 0.001 seconds
234s Total time: 0.140 seconds
234s Murasaki finished!
234s PASSED MURASAKI
234s 
234s Testing Genepare on NZ_GG705128.fna
234s 18446744073709551165
234s PASSED GENEPARSE
234s 
234s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
234s Testing mbfa on NZ_GG705128.fna
234s PASSED mbfa
234s 
234s Test Murasaki on NZ_GG705129.fna
234s Verbosity level is: 0
234s Writing to: output/test
234s Pattern is: 101
234s Max usable hash bits: 27
234s Hit filter is: 0
234s Hash table type is: EcoHash
234s Hashing every: 1 base
234s Histogram detail is: 0
234s Hashing function is: 3
234s Collision profiling is: disabled
234s Repeats are: unmasked
234s Mergefilter is at: 100
234s Random seed: 1710447495 (automatic)
234s Bitscore output: on
234s Leave status records: no
234s Join neighbors is: off
234s Target memory is: 1.24 GB
234s Retain members is: true
234s Store repeatmap? yes
234s Reverse complement data is generated on the fly
234s Rifts allowed: 0
234s Fuzzy Extension: yes
234s Score by minimum pair: yes
234s Gapped anchors: no
234s Large sequence support is: enabled => seqpos is 8 bytes
234s Murasaki version 1.68.6 (LARGESEQ)
234s Loading NZ_GG705129.fna
234s Read 536bp (536 bytesp) in 0.000 seconds (1.6 MBp/s)
234s Done with forward strand (536bp). Preparing reverse complement...
234s  <-> Reversing metdata.
234s Done.
234s Seq NZ_GG705129.fna loaded. 536 bytes
234s Loading NZ_GG705129.gbk
234s Read 536bp (536 bytesp) in 0.000 seconds (2.3 MBp/s)
234s Done with forward strand (536bp). Preparing reverse complement...
234s  <-> Reversing metdata.
234s Done.
234s Seq NZ_GG705129.gbk loaded. 536 bytes
234s Sequence loading took: 0.001 seconds
234s Forward frequencies:  A:36.3806%  C:13.2463%  G:17.9104%  T:32.4627%
234s Global base frequencies:  A/T:68.8433%  C/G:31.1567%
234s Pat: 3 bases long with weight 2
234s    1 101 
234s Computing hash parameters...
234s Using 4 hashbits
234s  0%......... (T -0.120 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.095 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.080 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.067 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.053 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.040 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.026 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%........
234s Acceptable hash function found after 1000 cycles.
234s Best uses 2/2 bases and has 0 empties from 2 inputs.
234s Score: 0.96875 (cf. worst: -4.51562)
234s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
234s Total correlation penalty: 0
234s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
234s                                             10
234s                                             ==
234s w[ 0]>>29:                                 -.C
234s w[ 0]>>30:                                  A.-
234s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
234s Ecolist (optimistic): Expcted entries per list: 8
234s Ecolist (optimistic): Minimum chunks per list: 4
234s Would take minimum 256.000000 bytes to make perfect hash.
234s Hashing 2.09 KB of sequence requires: 
234s  ~ linear (in seq length) hashing cost of 3.40 KB
234s  ~ linear (in seq length) expected anchor cost of 50.25 KB
234s Initial hash table uses: 256 bytes (4 bits, 16 entries)
234s Expected memory usage (without anchors): 3.65 KB
234s Expected memory usage (with anchors): 53.90 KB
234s Hash parameters computed in 0.133 seconds
234s Creating storage structures: 16 entries in 256 bytes space.
234s Storage structures created in: 0.000 seconds
234s 
234s Hashing NZ_GG705129.fna forwards
234s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%.......
234s Hashing NZ_GG705129.fna backwards
234s  0%........ (T -0.003 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%.......
234s Hashing NZ_GG705129.gbk forwards
234s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%.......
234s Hashing NZ_GG705129.gbk backwards
234s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%.......
234s Initial hashing took: 0.003 seconds
234s Extracting anchors from hash-space.
234s  (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s  6%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 18%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 31%. (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 93%.
234s Anchor extraction completed in: 0.001 seconds
234s Total anchors: 0
234s Anchor extraction + merge time: 0.001 seconds
234s Total processing time: 0.138 seconds
234s Writing anchors...
234s Total seeds used in anchors: 16
234s Hash performance:
234s  Keys used: 16 out of 16 possible (100.00%).
234s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
234s  Average pigeons per pigeon hole: 1
234s Writing 16 repeats...Output writing finished in: 0.001 seconds
234s Total time: 0.138 seconds
234s Murasaki finished!
234s PASSED MURASAKI
234s 
234s Testing Genepare on NZ_GG705129.fna
234s 18446744073709551153
234s PASSED GENEPARSE
234s 
234s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
234s Testing mbfa on NZ_GG705129.fna
234s PASSED mbfa
234s 
234s Test Murasaki on NZ_GG705130.fna
234s Verbosity level is: 0
234s Writing to: output/test
234s Pattern is: 101
234s Max usable hash bits: 27
234s Hit filter is: 0
234s Hash table type is: EcoHash
234s Hashing every: 1 base
234s Histogram detail is: 0
234s Hashing function is: 3
234s Collision profiling is: disabled
234s Repeats are: unmasked
234s Mergefilter is at: 100
234s Random seed: 1710447495 (automatic)
234s Bitscore output: on
234s Leave status records: no
234s Join neighbors is: off
234s Target memory is: 1.24 GB
234s Retain members is: true
234s Store repeatmap? yes
234s Reverse complement data is generated on the fly
234s Rifts allowed: 0
234s Fuzzy Extension: yes
234s Score by minimum pair: yes
234s Gapped anchors: no
234s Large sequence support is: enabled => seqpos is 8 bytes
234s Murasaki version 1.68.6 (LARGESEQ)
234s Loading NZ_GG705130.fna
234s Read 512bp (512 bytesp) in 0.000 seconds (2.0 MBp/s)
234s Done with forward strand (512bp). Preparing reverse complement...
234s  <-> Reversing metdata.
234s Done.
234s Seq NZ_GG705130.fna loaded. 512 bytes
234s Loading NZ_GG705130.gbk
234s Read 512bp (512 bytesp) in 0.000 seconds (2.3 MBp/s)
234s Done with forward strand (512bp). Preparing reverse complement...
234s  <-> Reversing metdata.
234s Done.
234s Seq NZ_GG705130.gbk loaded. 512 bytes
234s Sequence loading took: 0.001 seconds
234s Forward frequencies:  A:33.5938%  C:14.4531%  G:19.1406%  T:32.8125%
234s Global base frequencies:  A/T:66.4062%  C/G:33.5938%
234s Pat: 3 bases long with weight 2
234s    1 101 
234s Computing hash parameters...
234s Using 4 hashbits
234s  0%......... (T -0.123 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%......... (T -0.108 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%......... (T -0.097 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%......... (T -0.083 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%......... (T -0.070 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 50%......... (T -0.056 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 60%......... (T -0.042 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 70%......... (T -0.028 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 80%......... (T -0.012 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%........
234s Acceptable hash function found after 1000 cycles.
234s Best uses 2/2 bases and has 0 empties from 2 inputs.
234s Score: 0.96875 (cf. worst: -4.51562)
234s Entropy: high: 1 lo: 1 total: 2 bases (mean: 1 stddev: 0)
234s Total correlation penalty: 0
234s Post cleanup: w[0]>>29 ^ w[0]>>30 {2}
234s                                             10
234s                                             ==
234s w[ 0]>>29:                                 -.C
234s w[ 0]>>30:                                  A.-
234s Ecolist (optimistic): (seqbits: 2 idxbits: 11 minBlocks: 1 initblocks: 1)
234s Ecolist (optimistic): Expcted entries per list: 8
234s Ecolist (optimistic): Minimum chunks per list: 4
234s Would take minimum 256.000000 bytes to make perfect hash.
234s Hashing 2.00 KB of sequence requires: 
234s  ~ linear (in seq length) hashing cost of 3.25 KB
234s  ~ linear (in seq length) expected anchor cost of 48.00 KB
234s Initial hash table uses: 256 bytes (4 bits, 16 entries)
234s Expected memory usage (without anchors): 3.50 KB
234s Expected memory usage (with anchors): 51.50 KB
234s Hash parameters computed in 0.137 seconds
234s Creating storage structures: 16 entries in 256 bytes space.
234s Storage structures created in: 0.000 seconds
234s 
234s Hashing NZ_GG705130.fna forwards
234s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 51%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 61%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%......
234s Hashing NZ_GG705130.fna backwards
234s  0%........ (T -0.006 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%........ (T -0.004 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 51%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 61%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%......
234s Hashing NZ_GG705130.gbk forwards
234s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 51%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 61%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 71%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%......
234s Hashing NZ_GG705130.gbk backwards
234s  0%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 10%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 20%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 30%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 40%........ (T -0.002 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 51%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 61%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 71%........ (T -0.001 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 81%........ (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 91%......
234s Initial hashing took: 0.005 seconds
234s Extracting anchors from hash-space.
234s  (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s  6%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 18%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 31%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 43%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 56%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 68%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 81%. (T -0.000 seconds) ETA: Thu Mar 14 20:18:15 2024
234s 93%.
234s Anchor extraction completed in: 0.001 seconds
234s Total anchors: 0
234s Anchor extraction + merge time: 0.001 seconds
234s Total processing time: 0.143 seconds
234s Writing anchors...
234s Total seeds used in anchors: 16
234s Hash performance:
234s  Keys used: 16 out of 16 possible (100.00%).
234s  Used keyspace is 100.00% = 100.00% of magic *optimal 100.00%
234s  Average pigeons per pigeon hole: 1
234s Writing 16 repeats...Output writing finished in: 0.001 seconds
234s Total time: 0.143 seconds
234s Murasaki finished!
234s PASSED MURASAKI
234s 
234s Testing Genepare on NZ_GG705130.fna
234s 18446744073709551129
234s PASSED GENEPARSE
234s 
234s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation)
234s Testing mbfa on NZ_GG705130.fna
234s PASSED mbfa
234s 
234s PASS!
235s autopkgtest [20:18:16]: test run-unit-test: -----------------------]
235s run-unit-test        PASS
235s autopkgtest [20:18:16]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
236s autopkgtest [20:18:17]: @@@@@@@@@@@@@@@@@@@@ summary
236s run-unit-test        PASS
248s Creating nova instance adt-noble-ppc64el-murasaki-20240314-201421-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240314.img (UUID a031584c-aec8-4412-bff6-4238354f4d17)...