0s autopkgtest [22:47:47]: starting date and time: 2024-03-19 22:47:47+0000 0s autopkgtest [22:47:47]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [22:47:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u0xwia56/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:openssh,src:at-spi2-core,src:glib2.0,src:gtk+3.0,src:openssl --apt-upgrade mrbayes --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=openssh/1:9.6p1-3ubuntu11 at-spi2-core/2.51.90-3 glib2.0/2.79.3-3ubuntu5 gtk+3.0/3.24.41-1.1ubuntu1 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-7.secgroup --name adt-noble-ppc64el-mrbayes-20240319-224746-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 226s autopkgtest [22:51:33]: testbed dpkg architecture: ppc64el 226s autopkgtest [22:51:33]: testbed apt version: 2.7.12 226s autopkgtest [22:51:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 227s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 228s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3797 kB] 229s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.7 kB] 229s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [492 kB] 229s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 229s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [655 kB] 229s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 229s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 229s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 229s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4078 kB] 230s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 230s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [47.7 kB] 230s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 233s Fetched 9259 kB in 3s (2775 kB/s) 233s Reading package lists... 235s Reading package lists... 236s Building dependency tree... 236s Reading state information... 236s Calculating upgrade... 236s The following packages will be REMOVED: 236s libglib2.0-0 libssl3 236s The following NEW packages will be installed: 236s libglib2.0-0t64 libssl3t64 xdg-user-dirs 236s The following packages will be upgraded: 236s gir1.2-glib-2.0 libglib2.0-data openssh-client openssh-server 236s openssh-sftp-server openssl ubuntu-minimal ubuntu-standard 236s 8 upgraded, 3 newly installed, 2 to remove and 0 not upgraded. 236s Need to get 6977 kB of archives. 236s After this operation, 933 kB of additional disk space will be used. 236s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gir1.2-glib-2.0 ppc64el 2.79.3-3ubuntu5 [182 kB] 236s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-0t64 ppc64el 2.79.3-3ubuntu5 [1773 kB] 237s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 237s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-sftp-server ppc64el 1:9.6p1-3ubuntu11 [43.7 kB] 237s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-server ppc64el 1:9.6p1-3ubuntu11 [627 kB] 237s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-client ppc64el 1:9.6p1-3ubuntu11 [1112 kB] 237s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 237s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 237s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-minimal ppc64el 1.536build1 [10.7 kB] 237s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-user-dirs ppc64el 0.18-1 [20.0 kB] 237s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-standard ppc64el 1.536build1 [10.7 kB] 237s Preconfiguring packages ... 237s Fetched 6977 kB in 1s (8159 kB/s) 237s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 237s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_ppc64el.deb ... 237s Unpacking gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 237s dpkg: libglib2.0-0:ppc64el: dependency problems, but removing anyway as you requested: 237s udisks2 depends on libglib2.0-0 (>= 2.77.0). 237s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 237s python3-gi depends on libglib2.0-0 (>= 2.77.0). 237s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 237s netplan.io depends on libglib2.0-0 (>= 2.70.0). 237s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 237s libxmlb2:ppc64el depends on libglib2.0-0 (>= 2.54.0). 237s libvolume-key1:ppc64el depends on libglib2.0-0 (>= 2.18.0). 237s libudisks2-0:ppc64el depends on libglib2.0-0 (>= 2.75.3). 237s libqrtr-glib0:ppc64el depends on libglib2.0-0 (>= 2.56). 237s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 237s libqmi-glib5:ppc64el depends on libglib2.0-0 (>= 2.54.0). 237s libpolkit-gobject-1-0:ppc64el depends on libglib2.0-0 (>= 2.38.0). 237s libpolkit-agent-1-0:ppc64el depends on libglib2.0-0 (>= 2.38.0). 237s libnetplan0:ppc64el depends on libglib2.0-0 (>= 2.75.3). 237s libmm-glib0:ppc64el depends on libglib2.0-0 (>= 2.62.0). 237s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 237s libmbim-glib4:ppc64el depends on libglib2.0-0 (>= 2.56). 237s libjson-glib-1.0-0:ppc64el depends on libglib2.0-0 (>= 2.75.3). 237s libjcat1:ppc64el depends on libglib2.0-0 (>= 2.75.3). 237s libgusb2:ppc64el depends on libglib2.0-0 (>= 2.75.3). 237s libgudev-1.0-0:ppc64el depends on libglib2.0-0 (>= 2.38.0). 237s libgirepository-1.0-1:ppc64el depends on libglib2.0-0 (>= 2.79.0). 237s libfwupd2:ppc64el depends on libglib2.0-0 (>= 2.79.0). 237s libblockdev3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 237s libblockdev-utils3:ppc64el depends on libglib2.0-0 (>= 2.75.3). 237s libblockdev-swap3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 237s libblockdev-part3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 237s libblockdev-nvme3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 237s libblockdev-mdraid3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 237s libblockdev-loop3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 237s libblockdev-fs3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 237s libblockdev-crypto3:ppc64el depends on libglib2.0-0 (>= 2.42.2). 237s fwupd depends on libglib2.0-0 (>= 2.79.0). 237s bolt depends on libglib2.0-0 (>= 2.56.0). 237s 237s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 237s Removing libglib2.0-0:ppc64el (2.79.2-1~ubuntu1) ... 237s Selecting previously unselected package libglib2.0-0t64:ppc64el. 237s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70070 files and directories currently installed.) 237s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_ppc64el.deb ... 237s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 237s removed '/var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm' 237s Unpacking libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 237s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 237s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 238s Preparing to unpack .../openssh-sftp-server_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 238s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 238s Preparing to unpack .../openssh-server_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 238s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 238s Preparing to unpack .../openssh-client_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 238s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 238s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 238s wget depends on libssl3 (>= 3.0.0). 238s tnftp depends on libssl3 (>= 3.0.0). 238s tcpdump depends on libssl3 (>= 3.0.0). 238s systemd-resolved depends on libssl3 (>= 3.0.0). 238s systemd depends on libssl3 (>= 3.0.0). 238s sudo depends on libssl3 (>= 3.0.0). 238s rsync depends on libssl3 (>= 3.0.0). 238s python3-cryptography depends on libssl3 (>= 3.0.0). 238s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 238s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 238s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 238s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 238s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 238s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 238s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 238s libnvme1 depends on libssl3 (>= 3.0.0). 238s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 238s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 238s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 238s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 238s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 238s kmod depends on libssl3 (>= 3.0.0). 238s dhcpcd-base depends on libssl3 (>= 3.0.0). 238s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 238s 238s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70095 files and directories currently installed.) 238s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 238s Selecting previously unselected package libssl3t64:ppc64el. 238s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70084 files and directories currently installed.) 238s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 238s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 238s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 238s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 238s Preparing to unpack .../ubuntu-minimal_1.536build1_ppc64el.deb ... 238s Unpacking ubuntu-minimal (1.536build1) over (1.536) ... 238s Selecting previously unselected package xdg-user-dirs. 238s Preparing to unpack .../xdg-user-dirs_0.18-1_ppc64el.deb ... 238s Unpacking xdg-user-dirs (0.18-1) ... 238s Preparing to unpack .../ubuntu-standard_1.536build1_ppc64el.deb ... 238s Unpacking ubuntu-standard (1.536build1) over (1.536) ... 238s Setting up ubuntu-minimal (1.536build1) ... 238s Setting up xdg-user-dirs (0.18-1) ... 238s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 238s Setting up openssh-client (1:9.6p1-3ubuntu11) ... 238s Setting up ubuntu-standard (1.536build1) ... 238s Setting up libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 238s No schema files found: doing nothing. 238s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 238s Setting up gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) ... 238s Setting up openssl (3.0.13-0ubuntu2) ... 238s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ... 238s Setting up openssh-server (1:9.6p1-3ubuntu11) ... 238s Replacing config file /etc/ssh/sshd_config with new version 240s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket. 241s Processing triggers for ufw (0.36.2-5) ... 241s Processing triggers for man-db (2.12.0-3) ... 242s Processing triggers for libc-bin (2.39-0ubuntu2) ... 242s Reading package lists... 243s Building dependency tree... 243s Reading state information... 243s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 243s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 243s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 243s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 243s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 245s Reading package lists... 245s Reading package lists... 245s Building dependency tree... 245s Reading state information... 245s Calculating upgrade... 245s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 245s Reading package lists... 245s Building dependency tree... 245s Reading state information... 246s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 246s autopkgtest [22:51:53]: rebooting testbed after setup commands that affected boot 418s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 441s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 449s autopkgtest [22:55:16]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 452s autopkgtest [22:55:19]: @@@@@@@@@@@@@@@@@@@@ apt-source mrbayes 456s Get:1 http://ftpmaster.internal/ubuntu noble/universe mrbayes 3.2.7a-7 (dsc) [2184 B] 456s Get:2 http://ftpmaster.internal/ubuntu noble/universe mrbayes 3.2.7a-7 (tar) [9819 kB] 456s Get:3 http://ftpmaster.internal/ubuntu noble/universe mrbayes 3.2.7a-7 (diff) [7380 B] 456s gpgv: Signature made Sun Jan 14 13:54:21 2024 UTC 456s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 456s gpgv: issuer "tille@debian.org" 456s gpgv: Can't check signature: No public key 456s dpkg-source: warning: cannot verify inline signature for ./mrbayes_3.2.7a-7.dsc: no acceptable signature found 456s autopkgtest [22:55:23]: testing package mrbayes version 3.2.7a-7 456s autopkgtest [22:55:23]: build not needed 460s autopkgtest [22:55:27]: test run-unit-test: preparing testbed 463s Reading package lists... 463s Building dependency tree... 463s Reading state information... 464s Starting pkgProblemResolver with broken count: 0 464s Starting 2 pkgProblemResolver with broken count: 0 464s Done 464s The following additional packages will be installed: 464s libamd-comgr2 libamdhip64-5 libclang-common-17-dev libclang-cpp17 libclc-17 464s libclc-17-dev libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 464s libevent-pthreads-2.1-7 libfabric1 libhmsbeagle1v5 libhsa-runtime64-1 464s libhsakmt1 libhwloc-plugins libhwloc15 libllvm17 libllvmspirvlib17 libmunge2 464s libopenmpi3 libpciaccess0 libpmix2 librdmacm1t64 libucx0 libxnvctrl0 464s mesa-opencl-icd mpi-default-bin mrbayes mrbayes-doc mrbayes-mpi 464s ocl-icd-libopencl1 openmpi-bin openmpi-common ssh 464s Suggested packages: 464s mpi-default gfortran | fortran-compiler 464s Recommended packages: 464s libclang-rt-17-dev 464s The following NEW packages will be installed: 464s autopkgtest-satdep libamd-comgr2 libamdhip64-5 libclang-common-17-dev 464s libclang-cpp17 libclc-17 libclc-17-dev libdrm-amdgpu1 libdrm-nouveau2 464s libdrm-radeon1 libevent-pthreads-2.1-7 libfabric1 libhmsbeagle1v5 464s libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 libllvm17 464s libllvmspirvlib17 libmunge2 libopenmpi3 libpciaccess0 libpmix2 librdmacm1t64 464s libucx0 libxnvctrl0 mesa-opencl-icd mpi-default-bin mrbayes mrbayes-doc 464s mrbayes-mpi ocl-icd-libopencl1 openmpi-bin openmpi-common ssh 464s 0 upgraded, 35 newly installed, 0 to remove and 0 not upgraded. 464s Need to get 97.4 MB/97.4 MB of archives. 464s After this operation, 513 MB of additional disk space will be used. 464s Get:1 /tmp/autopkgtest.1BSiSJ/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 464s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libllvm17 ppc64el 1:17.0.6-5build1 [27.3 MB] 466s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el libamd-comgr2 ppc64el 6.0+git20231212.4510c28+dfsg-3 [15.3 MB] 467s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-amdgpu1 ppc64el 2.4.120-2 [24.5 kB] 467s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhsakmt1 ppc64el 5.7.0-1 [76.5 kB] 467s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhsa-runtime64-1 ppc64el 5.7.1-1 [330 kB] 467s Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el libamdhip64-5 ppc64el 5.2.3-12 [5004 kB] 467s Get:8 http://ftpmaster.internal/ubuntu noble/universe ppc64el libclang-common-17-dev all 1:17.0.6-5build1 [690 kB] 467s Get:9 http://ftpmaster.internal/ubuntu noble/universe ppc64el libclang-cpp17 ppc64el 1:17.0.6-5build1 [13.7 MB] 467s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el libclc-17-dev all 1:17.0.6-5build1 [60.7 kB] 467s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el libclc-17 all 1:17.0.6-5build1 [9972 kB] 468s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-nouveau2 ppc64el 2.4.120-2 [21.2 kB] 468s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-radeon1 ppc64el 2.4.120-2 [30.6 kB] 468s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libevent-pthreads-2.1-7 ppc64el 2.1.12-stable-9 [7844 B] 468s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el librdmacm1t64 ppc64el 50.0-2 [80.9 kB] 468s Get:16 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfabric1 ppc64el 1.17.0-3 [677 kB] 468s Get:17 http://ftpmaster.internal/ubuntu noble/universe ppc64el ocl-icd-libopencl1 ppc64el 2.3.2-1 [41.7 kB] 468s Get:18 http://ftpmaster.internal/ubuntu noble/universe ppc64el libllvmspirvlib17 ppc64el 17.0.0-4 [904 kB] 468s Get:19 http://ftpmaster.internal/ubuntu noble/universe ppc64el mesa-opencl-icd ppc64el 24.0.1-1ubuntu1 [14.0 MB] 468s Get:20 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhmsbeagle1v5 ppc64el 3.1.2+dfsg-13 [182 kB] 468s Get:21 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhwloc15 ppc64el 2.10.0-1 [216 kB] 468s Get:22 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmunge2 ppc64el 0.5.15-3ubuntu1 [17.6 kB] 468s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libpciaccess0 ppc64el 0.17-3 [20.8 kB] 468s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libxnvctrl0 ppc64el 510.47.03-0ubuntu1 [11.7 kB] 468s Get:25 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhwloc-plugins ppc64el 2.10.0-1 [17.3 kB] 468s Get:26 http://ftpmaster.internal/ubuntu noble/universe ppc64el libpmix2 ppc64el 5.0.1-4 [750 kB] 468s Get:27 http://ftpmaster.internal/ubuntu noble/universe ppc64el libucx0 ppc64el 1.16.0+ds-4 [1203 kB] 468s Get:28 http://ftpmaster.internal/ubuntu noble/universe ppc64el libopenmpi3 ppc64el 4.1.6-5ubuntu1 [3404 kB] 468s Get:29 http://ftpmaster.internal/ubuntu noble/universe ppc64el mrbayes ppc64el 3.2.7a-7 [923 kB] 468s Get:30 http://ftpmaster.internal/ubuntu noble/universe ppc64el openmpi-common all 4.1.6-5ubuntu1 [178 kB] 468s Get:31 http://ftpmaster.internal/ubuntu noble/universe ppc64el openmpi-bin ppc64el 4.1.6-5ubuntu1 [129 kB] 468s Get:32 http://ftpmaster.internal/ubuntu noble/universe ppc64el mpi-default-bin ppc64el 1.15 [2336 B] 468s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ssh all 1:9.6p1-3ubuntu11 [4650 B] 468s Get:34 http://ftpmaster.internal/ubuntu noble/universe ppc64el mrbayes-mpi ppc64el 3.2.7a-7 [850 kB] 468s Get:35 http://ftpmaster.internal/ubuntu noble/universe ppc64el mrbayes-doc all 3.2.7a-7 [1322 kB] 469s Fetched 97.4 MB in 5s (19.3 MB/s) 469s Selecting previously unselected package libllvm17:ppc64el. 469s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70111 files and directories currently installed.) 469s Preparing to unpack .../00-libllvm17_1%3a17.0.6-5build1_ppc64el.deb ... 469s Unpacking libllvm17:ppc64el (1:17.0.6-5build1) ... 470s Selecting previously unselected package libamd-comgr2:ppc64el. 470s Preparing to unpack .../01-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_ppc64el.deb ... 470s Unpacking libamd-comgr2:ppc64el (6.0+git20231212.4510c28+dfsg-3) ... 471s Selecting previously unselected package libdrm-amdgpu1:ppc64el. 471s Preparing to unpack .../02-libdrm-amdgpu1_2.4.120-2_ppc64el.deb ... 471s Unpacking libdrm-amdgpu1:ppc64el (2.4.120-2) ... 471s Selecting previously unselected package libhsakmt1:ppc64el. 471s Preparing to unpack .../03-libhsakmt1_5.7.0-1_ppc64el.deb ... 471s Unpacking libhsakmt1:ppc64el (5.7.0-1) ... 471s Selecting previously unselected package libhsa-runtime64-1. 471s Preparing to unpack .../04-libhsa-runtime64-1_5.7.1-1_ppc64el.deb ... 471s Unpacking libhsa-runtime64-1 (5.7.1-1) ... 471s Selecting previously unselected package libamdhip64-5. 471s Preparing to unpack .../05-libamdhip64-5_5.2.3-12_ppc64el.deb ... 471s Unpacking libamdhip64-5 (5.2.3-12) ... 471s Selecting previously unselected package libclang-common-17-dev. 471s Preparing to unpack .../06-libclang-common-17-dev_1%3a17.0.6-5build1_all.deb ... 471s Unpacking libclang-common-17-dev (1:17.0.6-5build1) ... 471s Selecting previously unselected package libclang-cpp17. 471s Preparing to unpack .../07-libclang-cpp17_1%3a17.0.6-5build1_ppc64el.deb ... 471s Unpacking libclang-cpp17 (1:17.0.6-5build1) ... 472s Selecting previously unselected package libclc-17-dev. 472s Preparing to unpack .../08-libclc-17-dev_1%3a17.0.6-5build1_all.deb ... 472s Unpacking libclc-17-dev (1:17.0.6-5build1) ... 472s Selecting previously unselected package libclc-17. 472s Preparing to unpack .../09-libclc-17_1%3a17.0.6-5build1_all.deb ... 472s Unpacking libclc-17 (1:17.0.6-5build1) ... 472s Selecting previously unselected package libdrm-nouveau2:ppc64el. 472s Preparing to unpack .../10-libdrm-nouveau2_2.4.120-2_ppc64el.deb ... 472s Unpacking libdrm-nouveau2:ppc64el (2.4.120-2) ... 472s Selecting previously unselected package libdrm-radeon1:ppc64el. 472s Preparing to unpack .../11-libdrm-radeon1_2.4.120-2_ppc64el.deb ... 472s Unpacking libdrm-radeon1:ppc64el (2.4.120-2) ... 472s Selecting previously unselected package libevent-pthreads-2.1-7:ppc64el. 472s Preparing to unpack .../12-libevent-pthreads-2.1-7_2.1.12-stable-9_ppc64el.deb ... 472s Unpacking libevent-pthreads-2.1-7:ppc64el (2.1.12-stable-9) ... 472s Selecting previously unselected package librdmacm1t64:ppc64el. 472s Preparing to unpack .../13-librdmacm1t64_50.0-2_ppc64el.deb ... 472s Unpacking librdmacm1t64:ppc64el (50.0-2) ... 472s Selecting previously unselected package libfabric1:ppc64el. 472s Preparing to unpack .../14-libfabric1_1.17.0-3_ppc64el.deb ... 472s Unpacking libfabric1:ppc64el (1.17.0-3) ... 472s Selecting previously unselected package ocl-icd-libopencl1:ppc64el. 472s Preparing to unpack .../15-ocl-icd-libopencl1_2.3.2-1_ppc64el.deb ... 472s Unpacking ocl-icd-libopencl1:ppc64el (2.3.2-1) ... 472s Selecting previously unselected package libllvmspirvlib17:ppc64el. 472s Preparing to unpack .../16-libllvmspirvlib17_17.0.0-4_ppc64el.deb ... 472s Unpacking libllvmspirvlib17:ppc64el (17.0.0-4) ... 472s Selecting previously unselected package mesa-opencl-icd:ppc64el. 472s Preparing to unpack .../17-mesa-opencl-icd_24.0.1-1ubuntu1_ppc64el.deb ... 472s Unpacking mesa-opencl-icd:ppc64el (24.0.1-1ubuntu1) ... 473s Selecting previously unselected package libhmsbeagle1v5:ppc64el. 473s Preparing to unpack .../18-libhmsbeagle1v5_3.1.2+dfsg-13_ppc64el.deb ... 473s Unpacking libhmsbeagle1v5:ppc64el (3.1.2+dfsg-13) ... 473s Selecting previously unselected package libhwloc15:ppc64el. 473s Preparing to unpack .../19-libhwloc15_2.10.0-1_ppc64el.deb ... 473s Unpacking libhwloc15:ppc64el (2.10.0-1) ... 473s Selecting previously unselected package libmunge2:ppc64el. 473s Preparing to unpack .../20-libmunge2_0.5.15-3ubuntu1_ppc64el.deb ... 473s Unpacking libmunge2:ppc64el (0.5.15-3ubuntu1) ... 473s Selecting previously unselected package libpciaccess0:ppc64el. 473s Preparing to unpack .../21-libpciaccess0_0.17-3_ppc64el.deb ... 473s Unpacking libpciaccess0:ppc64el (0.17-3) ... 473s Selecting previously unselected package libxnvctrl0:ppc64el. 473s Preparing to unpack .../22-libxnvctrl0_510.47.03-0ubuntu1_ppc64el.deb ... 473s Unpacking libxnvctrl0:ppc64el (510.47.03-0ubuntu1) ... 473s Selecting previously unselected package libhwloc-plugins:ppc64el. 473s Preparing to unpack .../23-libhwloc-plugins_2.10.0-1_ppc64el.deb ... 473s Unpacking libhwloc-plugins:ppc64el (2.10.0-1) ... 473s Selecting previously unselected package libpmix2:ppc64el. 473s Preparing to unpack .../24-libpmix2_5.0.1-4_ppc64el.deb ... 473s Unpacking libpmix2:ppc64el (5.0.1-4) ... 473s Selecting previously unselected package libucx0:ppc64el. 473s Preparing to unpack .../25-libucx0_1.16.0+ds-4_ppc64el.deb ... 473s Unpacking libucx0:ppc64el (1.16.0+ds-4) ... 473s Selecting previously unselected package libopenmpi3:ppc64el. 473s Preparing to unpack .../26-libopenmpi3_4.1.6-5ubuntu1_ppc64el.deb ... 473s Unpacking libopenmpi3:ppc64el (4.1.6-5ubuntu1) ... 473s Selecting previously unselected package mrbayes. 473s Preparing to unpack .../27-mrbayes_3.2.7a-7_ppc64el.deb ... 473s Unpacking mrbayes (3.2.7a-7) ... 473s Selecting previously unselected package openmpi-common. 473s Preparing to unpack .../28-openmpi-common_4.1.6-5ubuntu1_all.deb ... 473s Unpacking openmpi-common (4.1.6-5ubuntu1) ... 473s Selecting previously unselected package openmpi-bin. 473s Preparing to unpack .../29-openmpi-bin_4.1.6-5ubuntu1_ppc64el.deb ... 473s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 473s Selecting previously unselected package mpi-default-bin. 473s Preparing to unpack .../30-mpi-default-bin_1.15_ppc64el.deb ... 473s Unpacking mpi-default-bin (1.15) ... 473s Selecting previously unselected package ssh. 473s Preparing to unpack .../31-ssh_1%3a9.6p1-3ubuntu11_all.deb ... 473s Unpacking ssh (1:9.6p1-3ubuntu11) ... 473s Selecting previously unselected package mrbayes-mpi. 473s Preparing to unpack .../32-mrbayes-mpi_3.2.7a-7_ppc64el.deb ... 473s Unpacking mrbayes-mpi (3.2.7a-7) ... 473s Selecting previously unselected package mrbayes-doc. 473s Preparing to unpack .../33-mrbayes-doc_3.2.7a-7_all.deb ... 473s Unpacking mrbayes-doc (3.2.7a-7) ... 473s Selecting previously unselected package autopkgtest-satdep. 473s Preparing to unpack .../34-1-autopkgtest-satdep.deb ... 473s Unpacking autopkgtest-satdep (0) ... 473s Setting up libpciaccess0:ppc64el (0.17-3) ... 473s Setting up libdrm-nouveau2:ppc64el (2.4.120-2) ... 473s Setting up ssh (1:9.6p1-3ubuntu11) ... 473s Setting up libdrm-radeon1:ppc64el (2.4.120-2) ... 473s Setting up mrbayes-doc (3.2.7a-7) ... 473s Setting up libxnvctrl0:ppc64el (510.47.03-0ubuntu1) ... 473s Setting up libmunge2:ppc64el (0.5.15-3ubuntu1) ... 473s Setting up libclc-17-dev (1:17.0.6-5build1) ... 473s Setting up libhwloc15:ppc64el (2.10.0-1) ... 473s Setting up ocl-icd-libopencl1:ppc64el (2.3.2-1) ... 473s Setting up libclang-common-17-dev (1:17.0.6-5build1) ... 473s Setting up libclc-17 (1:17.0.6-5build1) ... 473s Setting up openmpi-common (4.1.6-5ubuntu1) ... 473s Setting up librdmacm1t64:ppc64el (50.0-2) ... 473s Setting up libllvm17:ppc64el (1:17.0.6-5build1) ... 473s Setting up libllvmspirvlib17:ppc64el (17.0.0-4) ... 473s Setting up libevent-pthreads-2.1-7:ppc64el (2.1.12-stable-9) ... 473s Setting up libdrm-amdgpu1:ppc64el (2.4.120-2) ... 473s Setting up libfabric1:ppc64el (1.17.0-3) ... 473s Setting up libhwloc-plugins:ppc64el (2.10.0-1) ... 473s Setting up libamd-comgr2:ppc64el (6.0+git20231212.4510c28+dfsg-3) ... 473s Setting up libclang-cpp17 (1:17.0.6-5build1) ... 473s Setting up libhsakmt1:ppc64el (5.7.0-1) ... 473s Setting up mesa-opencl-icd:ppc64el (24.0.1-1ubuntu1) ... 473s Setting up libpmix2:ppc64el (5.0.1-4) ... 473s Setting up libhmsbeagle1v5:ppc64el (3.1.2+dfsg-13) ... 473s Setting up mrbayes (3.2.7a-7) ... 473s Setting up libhsa-runtime64-1 (5.7.1-1) ... 473s Setting up libamdhip64-5 (5.2.3-12) ... 473s Setting up libucx0:ppc64el (1.16.0+ds-4) ... 473s Setting up libopenmpi3:ppc64el (4.1.6-5ubuntu1) ... 473s Setting up openmpi-bin (4.1.6-5ubuntu1) ... 473s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 473s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 473s Setting up mpi-default-bin (1.15) ... 473s Setting up mrbayes-mpi (3.2.7a-7) ... 473s Setting up autopkgtest-satdep (0) ... 473s Processing triggers for man-db (2.12.0-3) ... 474s Processing triggers for libc-bin (2.39-0ubuntu2) ... 478s (Reading database ... 71343 files and directories currently installed.) 478s Removing autopkgtest-satdep (0) ... 478s autopkgtest [22:55:45]: test run-unit-test: [----------------------- 479s 479s 479s MrBayes 3.2.7a powerpc64le 479s 479s (Bayesian Analysis of Phylogeny) 479s 479s Distributed under the GNU General Public License 479s 479s 479s Type "help" or "help " for information 479s on the commands that are available. 479s 479s Type "about" for authorship and general 479s information about the program. 479s 479s 479s 479s Executing file "avian_ovomucoids.nex" 479s DOS line termination 479s Longest line length = 129 479s Parsing file 479s Expecting NEXUS formatted file 479s Reading data block 479s Allocated taxon set 479s Allocated matrix 479s Defining new matrix with 89 taxa and 88 characters 479s Data is Protein 479s Missing data coded as ? 479s Gaps coded as - 479s Matching characters coded as . 479s Taxon 1 -> Struthio_camelus 479s Taxon 2 -> Rhea_americana 479s Taxon 3 -> Pterocnemia_pennata 479s Taxon 4 -> Casuarius_casuarius 479s Taxon 5 -> Dromaius_novaehollandiae 479s Taxon 6 -> Nothoprocta_cinerascens 479s Taxon 7 -> Eudromia_elegans 479s Taxon 8 -> Pygoscelis_adeliae_f 479s Taxon 9 -> Pygoscelis_adeliae_y 479s Taxon 10 -> Spheniscus_humboldti 479s Taxon 11 -> Phalacrocorax_sulcirostris 479s Taxon 12 -> Anhinga_novaehollandeae 479s Taxon 13 -> Nycticorax_nycticorax 479s Taxon 14 -> Chauna_chavaria 479s Taxon 15 -> Anseranas_semipalmata 479s Taxon 16 -> Dendrocygna_arcuata 479s Taxon 17 -> Dendrocygna_autumnalis 479s Taxon 18 -> Dendrocygna_eytoni_d 479s Taxon 19 -> Dendrocygna_eytoni_e 479s Taxon 20 -> Dendrocygna_viduata 479s Taxon 21 -> Coscoroba_coscoroba 479s Taxon 22 -> Cygnus_atratus 479s Taxon 23 -> Goose 479s Taxon 24 -> Anser_indicus 479s Taxon 25 -> Branta_canadensis 479s Taxon 26 -> Cereopsis_novaehollandiae 479s Taxon 27 -> Chloephaga_picta 479s Taxon 28 -> Duck 479s Taxon 29 -> Anas_platyrhynchos 479s Taxon 30 -> Megapodius_freycinet 479s Taxon 31 -> Leipoa_ocellata 479s Taxon 32 -> Ortalis_vetula 479s Taxon 33 -> Penelope_jacquacu 479s Taxon 34 -> Penelope_superciliaris 479s Taxon 35 -> Bonasa_umbellus 479s Taxon 36 -> Tympanuchus_cupido 479s Taxon 37 -> Oreortyx_pictus 479s Taxon 38 -> Callipepla_squamata_n 479s Taxon 39 -> Callipepla_squamata_s 479s Taxon 40 -> Lophortyx_californicus 479s Taxon 41 -> Colinus_virginianus 479s Taxon 42 -> Cyrtonyx_montezumae_l 479s Taxon 43 -> Cyrtonyx_montezumae_s 479s Taxon 44 -> Alectoris_chukar 479s Taxon 45 -> Alectoris_rufa 479s Taxon 46 -> Francolinus_afer 479s Taxon 47 -> Francolinus_erckelii 479s Taxon 48 -> Francolinus_coqui_v 479s Taxon 49 -> Francolinus_coqui_a 479s Taxon 50 -> Francolinus_francolinus_a 479s Taxon 51 -> Francolinus_francolinus_v 479s Taxon 52 -> Francolinus_pondicerianus 479s Taxon 53 -> Perdix_perdix 479s Taxon 54 -> Coturnix_delegorguei 479s Taxon 55 -> Coturnix_coturnix_japonica_1 479s Taxon 56 -> Coturnix_coturnix_japonica_2 479s Taxon 57 -> Arborophilia_torqueola 479s Taxon 58 -> Bambusicola_thoracica 479s Taxon 59 -> Tragopan_satyra 479s Taxon 60 -> Tragopan_temmincki 479s Taxon 61 -> Lophophorus_impejanus 479s Taxon 62 -> Crossoptilon_auritum 479s Taxon 63 -> Lophura_edwardsi 479s Taxon 64 -> Lophura_ignita 479s Taxon 65 -> Gallus_gallus 479s Taxon 66 -> Grey_jungle_fowl 479s Taxon 67 -> Phasianus_colchicus 479s Taxon 68 -> Syrmaticus_ellioti 479s Taxon 69 -> Syrmaticus_reevesii 479s Taxon 70 -> Chrysolophus_amherstiae 479s Taxon 71 -> Polyplectron_bicalcaratum 479s Taxon 72 -> Argusianus_argus_argus 479s Taxon 73 -> Pavo_cristatus 479s Taxon 74 -> Afropavo_congensis 479s Taxon 75 -> Numida_meleagris 479s Taxon 76 -> Acryllium_vulturinum 479s Taxon 77 -> Meleagris_gallopavo 479s Taxon 78 -> Grus_carunculatus 479s Taxon 79 -> Anthropoides_virgo 479s Taxon 80 -> Grus_vipio 479s Taxon 81 -> Fulica_atra 479s Taxon 82 -> Vanellus_spinosus 479s Taxon 83 -> Larus_rudibundus 479s Taxon 84 -> Turnix_sylvatica 479s Taxon 85 -> Gallirallus_australis 479s Taxon 86 -> Geococcyx_californianus 479s Taxon 87 -> Dacelo_novaeguineae 479s Taxon 88 -> Carpococcyx_renauldi 479s Taxon 89 -> Podargus_strigoides 479s Successfully read matrix 479s Setting default partition (does not divide up characters) 479s Setting model defaults 479s Seed (for generating default start values) = 1710888946 479s Setting output file names to "avian_ovomucoids.nex.run." 479s Exiting data block 479s Reached end of file 479s 479s Tasks completed, exiting program because mode is noninteractive 479s To return control to the command line after completion of file processing, 479s set mode to interactive with 'mb -i ' (i is for interactive) 479s or use 'set mode=interactive' 479s 479s 479s 479s MrBayes 3.2.7a powerpc64le 479s 479s (Bayesian Analysis of Phylogeny) 479s 479s Distributed under the GNU General Public License 479s 479s 479s Type "help" or "help " for information 479s on the commands that are available. 479s 479s Type "about" for authorship and general 479s information about the program. 479s 479s 479s 479s Executing file "codon.nex" 479s DOS line termination 479s Longest line length = 88 479s Parsing file 479s Expecting NEXUS formatted file 479s Reading mrbayes block 479s Setting autoclose to yes 479s Setting nowarnings to yes 479s 479s Executing file "replicase.nex"... 479s 479s DOS line termination 479s Longest line length = 970 479s Parsing file 479s Expecting NEXUS formatted file 479s Reading data block 479s Allocated taxon set 479s Allocated matrix 479s Defining new matrix with 9 taxa and 720 characters 479s Data is Rna 479s Data matrix is not interleaved 479s Gaps coded as - 479s Missing data coded as ? 479s Taxon 1 -> FR 479s Taxon 2 -> MS2 479s Taxon 3 -> GA 479s Taxon 4 -> SP 479s Taxon 5 -> NL95 479s Taxon 6 -> M11 479s Taxon 7 -> MX1 479s Taxon 8 -> QB 479s Taxon 9 -> PP7 479s Successfully read matrix 479s Setting default partition (does not divide up characters) 479s Setting model defaults 479s Seed (for generating default start values) = 1710888946 479s Setting output file names to "replicase.nex.run." 479s Exiting data block 479s Reached end of file 479s 479s Returning execution to calling file ... 479s 479s Setting Nucmodel to Codon 479s Set state frequency prior to default 479s Successfully set likelihood model parameters 479s Setting Nucmodel to Codon 479s Set state frequency prior to default 479s Setting Omegavar to Ny98 479s Successfully set likelihood model parameters 479s Reporting positive selection (if applicable) 479s Reporting site omega values (if applicable) 479s Setting Nucmodel to Codon 479s Set state frequency prior to default 479s Setting Omegavar to M3 479s Successfully set likelihood model parameters 479s Reporting positive selection (if applicable) 479s Setting print frequency to 10 479s Successfully set chain parameters 479s Exiting mrbayes block 479s Reached end of file 479s 479s Tasks completed, exiting program because mode is noninteractive 479s To return control to the command line after completion of file processing, 479s set mode to interactive with 'mb -i ' (i is for interactive) 479s or use 'set mode=interactive' 479s 479s 479s 479s MrBayes 3.2.7a powerpc64le 479s 479s (Bayesian Analysis of Phylogeny) 479s 479s Distributed under the GNU General Public License 479s 479s 479s Type "help" or "help " for information 479s on the commands that are available. 479s 479s Type "about" for authorship and general 479s information about the program. 479s 479s 479s 479s Executing file "cynmix.nex" 479s DOS line termination 479s Longest line length = 217 479s Parsing file 479s Expecting NEXUS formatted file 479s Reading data block 479s Allocated taxon set 479s Allocated matrix 479s Defining new matrix with 32 taxa and 3246 characters 479s Data is Mixed 479s Data for partition 1 is Standard 479s Data for partition 2 is Dna 479s There are a total of 2 default data divisions 479s Data matrix is interleaved 479s Gaps coded as - 479s Missing data coded as ? 479s Taxon 1 -> Ibalia 479s Taxon 2 -> Synergus 479s Taxon 3 -> Periclistus 479s Taxon 4 -> Ceroptres 479s Taxon 5 -> Synophromorpha 479s Taxon 6 -> Xestophanes 479s Taxon 7 -> Diastrophus 479s Taxon 8 -> Gonaspis 479s Taxon 9 -> Liposthenes_gle 479s Taxon 10 -> Liposthenes_ker 479s Taxon 11 -> Antistrophus 479s Taxon 12 -> Rhodus 479s Taxon 13 -> Hedickiana 479s Taxon 14 -> Neaylax 479s Taxon 15 -> Isocolus 479s Taxon 16 -> Aulacidea 479s Taxon 17 -> Panteliella 479s Taxon 18 -> Barbotinia 479s Taxon 19 -> Aylax 479s Taxon 20 -> Iraella 479s Taxon 21 -> Timaspis 479s Taxon 22 -> Phanacis_1 479s Taxon 23 -> Phanacis_2 479s Taxon 24 -> Eschatocerus 479s Taxon 25 -> Diplolepis 479s Taxon 26 -> Pediaspis 479s Taxon 27 -> Plagiotrochus 479s Taxon 28 -> Andricus 479s Taxon 29 -> Neuroterus 479s Taxon 30 -> Biorhiza 479s Taxon 31 -> Parnips 479s Taxon 32 -> Paramblynotus 479s Successfully read matrix 479s Matrix contains polymorphisms, interpreted as ambiguity 479s Setting default partition, dividing characters into 2 parts 479s Setting model defaults 479s Seed (for generating default start values) = 1710888946 479s Setting output file names to "cynmix.nex.run." 479s Exiting data block 479s Reading mrbayes block 479s Defining charset called 'morphology' 479s Defining charset called 'COI' 479s Defining charset called 'EF1a' 479s Defining charset called 'LWRh' 479s Defining charset called '28S' 479s Defining partition called 'favored' 479s Exiting mrbayes block 479s Reached end of file 479s 479s Tasks completed, exiting program because mode is noninteractive 479s To return control to the command line after completion of file processing, 479s set mode to interactive with 'mb -i ' (i is for interactive) 479s or use 'set mode=interactive' 479s 479s 479s 479s MrBayes 3.2.7a powerpc64le 479s 479s (Bayesian Analysis of Phylogeny) 479s 479s Distributed under the GNU General Public License 479s 479s 479s Type "help" or "help " for information 479s on the commands that are available. 479s 479s Type "about" for authorship and general 479s information about the program. 479s 479s 479s 479s Executing file "finch.nex" 479s DOS line termination 479s Longest line length = 665 479s Parsing file 479s Expecting NEXUS formatted file 479s Reading data block 479s Allocated taxon set 479s Allocated matrix 479s Defining new matrix with 4 taxa and 16119 characters 479s Data is Dna 479s Gaps coded as - 479s Missing data coded as ? 479s Matching characters coded as . 479s Taxon 1 -> Q097 479s Taxon 2 -> W097 479s Taxon 3 -> B097 479s Taxon 4 -> O097 479s Successfully read matrix 479s Setting default partition (does not divide up characters) 479s Setting model defaults 479s Seed (for generating default start values) = 1710888946 479s Setting output file names to "finch.nex.run." 479s Exiting data block 479s Reading mrbayes block 479s Setting autoclose to yes 479s Setting nowarnings to yes 479s Setting outgroup to taxon "O097" 479s Defining charset called 'locus097' 479s Defining charset called 'locus098' 479s Defining charset called 'locus118' 479s Defining charset called 'locus119' 479s Defining charset called 'locus120' 479s Defining charset called 'locus122' 479s Defining charset called 'locus130' 479s Defining charset called 'locus104' 479s Defining charset called 'locus129' 479s Defining charset called 'locus143' 479s Defining charset called 'locus146' 479s Defining charset called 'locus111' 479s Defining charset called 'locus135' 479s Defining charset called 'locus148' 479s Defining charset called 'locus182' 479s Defining charset called 'locus200' 479s Defining charset called 'locus209' 479s Defining charset called 'locusB098' 479s Defining charset called 'locus184' 479s Defining charset called 'locus185' 479s Defining charset called 'locus186' 479s Defining charset called 'locus187' 479s Defining charset called 'locus188' 479s Defining charset called 'locus192' 479s Defining charset called 'locus193' 479s Defining charset called 'locus195' 479s Defining charset called 'locus198' 479s Defining charset called 'locus199' 479s Defining charset called 'locusB200' 479s Defining charset called 'locus103' 479s Defining partition called 'genes' 479s Setting genes as the partition, dividing characters into 30 parts. 479s Setting model defaults 479s Seed (for generating default start values) = 1974453655 479s Defining speciespartition called 'test' 479s Setting test as the speciespartition, dividing taxa into 4 species. 479s Setting model defaults 479s Seed (for generating default start values) = 1011878203 479s Unlinking 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 1 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 2 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 3 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 4 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 5 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 6 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 7 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 8 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 9 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 10 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 11 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 12 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 13 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 14 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 15 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 16 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 17 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 18 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 19 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 20 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 21 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 22 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 23 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 24 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 25 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 26 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 27 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 28 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 29 479s Setting Brlenspr to Clock:Speciestreecoalescence for partition 30 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Topologypr to Speciestree for partition 1 479s Setting Topologypr to Speciestree for partition 2 479s Setting Topologypr to Speciestree for partition 3 479s Setting Topologypr to Speciestree for partition 4 479s Setting Topologypr to Speciestree for partition 5 479s Setting Topologypr to Speciestree for partition 6 479s Setting Topologypr to Speciestree for partition 7 479s Setting Topologypr to Speciestree for partition 8 479s Setting Topologypr to Speciestree for partition 9 479s Setting Topologypr to Speciestree for partition 10 479s Setting Topologypr to Speciestree for partition 11 479s Setting Topologypr to Speciestree for partition 12 479s Setting Topologypr to Speciestree for partition 13 479s Setting Topologypr to Speciestree for partition 14 479s Setting Topologypr to Speciestree for partition 15 479s Setting Topologypr to Speciestree for partition 16 479s Setting Topologypr to Speciestree for partition 17 479s Setting Topologypr to Speciestree for partition 18 479s Setting Topologypr to Speciestree for partition 19 479s Setting Topologypr to Speciestree for partition 20 479s Setting Topologypr to Speciestree for partition 21 479s Setting Topologypr to Speciestree for partition 22 479s Setting Topologypr to Speciestree for partition 23 479s Setting Topologypr to Speciestree for partition 24 479s Setting Topologypr to Speciestree for partition 25 479s Setting Topologypr to Speciestree for partition 26 479s Setting Topologypr to Speciestree for partition 27 479s Setting Topologypr to Speciestree for partition 28 479s Setting Topologypr to Speciestree for partition 29 479s Setting Topologypr to Speciestree for partition 30 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Popvarpr to Variable for partition 1 479s Setting Popvarpr to Variable for partition 2 479s Setting Popvarpr to Variable for partition 3 479s Setting Popvarpr to Variable for partition 4 479s Setting Popvarpr to Variable for partition 5 479s Setting Popvarpr to Variable for partition 6 479s Setting Popvarpr to Variable for partition 7 479s Setting Popvarpr to Variable for partition 8 479s Setting Popvarpr to Variable for partition 9 479s Setting Popvarpr to Variable for partition 10 479s Setting Popvarpr to Variable for partition 11 479s Setting Popvarpr to Variable for partition 12 479s Setting Popvarpr to Variable for partition 13 479s Setting Popvarpr to Variable for partition 14 479s Setting Popvarpr to Variable for partition 15 479s Setting Popvarpr to Variable for partition 16 479s Setting Popvarpr to Variable for partition 17 479s Setting Popvarpr to Variable for partition 18 479s Setting Popvarpr to Variable for partition 19 479s Setting Popvarpr to Variable for partition 20 479s Setting Popvarpr to Variable for partition 21 479s Setting Popvarpr to Variable for partition 22 479s Setting Popvarpr to Variable for partition 23 479s Setting Popvarpr to Variable for partition 24 479s Setting Popvarpr to Variable for partition 25 479s Setting Popvarpr to Variable for partition 26 479s Setting Popvarpr to Variable for partition 27 479s Setting Popvarpr to Variable for partition 28 479s Setting Popvarpr to Variable for partition 29 479s Setting Popvarpr to Variable for partition 30 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 1 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 2 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 3 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 4 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 5 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 6 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 7 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 8 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 9 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 10 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 11 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 12 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 13 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 14 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 15 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 16 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 17 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 18 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 19 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 20 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 21 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 22 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 23 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 24 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 25 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 26 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 27 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 28 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 29 479s Setting Popsizepr to Gamma(1.00,100.00) for partition 30 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Exiting mrbayes block 479s Reached end of file 479s 479s Tasks completed, exiting program because mode is noninteractive 479s To return control to the command line after completion of file processing, 479s set mode to interactive with 'mb -i ' (i is for interactive) 479s or use 'set mode=interactive' 479s 479s 479s 479s MrBayes 3.2.7a powerpc64le 479s 479s (Bayesian Analysis of Phylogeny) 479s 479s Distributed under the GNU General Public License 479s 479s 479s Type "help" or "help " for information 479s on the commands that are available. 479s 479s Type "about" for authorship and general 479s information about the program. 479s 479s 479s 479s Executing file "hymfossil.nex" 479s UNIX line termination 479s Longest line length = 1117 479s Parsing file 479s Expecting NEXUS formatted file 479s Reading data block 479s Allocated taxon set 479s Allocated matrix 479s Defining new matrix with 114 taxa and 5449 characters 479s Data is Mixed 479s Data for partition 1 is Standard 479s Data for partition 2 is Dna 479s There are a total of 2 default data divisions 479s Data matrix is interleaved 479s Gaps coded as - 479s Missing data coded as ? 479s Taxon 1 -> Orthoptera 479s Taxon 2 -> Paraneoptera 479s Taxon 3 -> Chrysopidae 479s Taxon 4 -> Raphidioptera 479s Taxon 5 -> Coleo_Polyphaga 479s Taxon 6 -> Coleo_Adephaga 479s Taxon 7 -> Lepid_Micropterigidae 479s Taxon 8 -> Lepid_Papilionidae 479s Taxon 9 -> Mecoptera 479s Taxon 10 -> Xyela 479s Taxon 11 -> Macroxyela 479s Taxon 12 -> Runaria 479s Taxon 13 -> Paremphytus 479s Taxon 14 -> Blasticotoma 479s Taxon 15 -> Tenthredo 479s Taxon 16 -> Aglaostigma 479s Taxon 17 -> Dolerus 479s Taxon 18 -> Selandria 479s Taxon 19 -> Strongylogaster 479s Taxon 20 -> Monophadnoides 479s Taxon 21 -> Metallus 479s Taxon 22 -> Athalia 479s Taxon 23 -> Taxonus 479s Taxon 24 -> Hoplocampa 479s Taxon 25 -> Nematinus 479s Taxon 26 -> Nematus 479s Taxon 27 -> Cladius 479s Taxon 28 -> Monoctenus 479s Taxon 29 -> Gilpinia 479s Taxon 30 -> Diprion 479s Taxon 31 -> Cimbicinae 479s Taxon 32 -> Abia 479s Taxon 33 -> Corynis 479s Taxon 34 -> Arge 479s Taxon 35 -> Sterictiphora 479s Taxon 36 -> Perga 479s Taxon 37 -> Phylacteophaga 479s Taxon 38 -> Lophyrotoma 479s Taxon 39 -> Acordulecera 479s Taxon 40 -> Decameria 479s Taxon 41 -> Neurotoma 479s Taxon 42 -> Onycholyda 479s Taxon 43 -> Pamphilius 479s Taxon 44 -> Cephalcia 479s Taxon 45 -> Acantholyda 479s Taxon 46 -> Megalodontesc 479s Taxon 47 -> Megalodontessk 479s Taxon 48 -> Cephus 479s Taxon 49 -> Calameuta 479s Taxon 50 -> Hartigia 479s Taxon 51 -> Syntexis 479s Taxon 52 -> Sirex 479s Taxon 53 -> Xeris 479s Taxon 54 -> Urocerus 479s Taxon 55 -> Tremex 479s Taxon 56 -> Xiphydria 479s Taxon 57 -> Orussus 479s Taxon 58 -> StephanidaeA 479s Taxon 59 -> StephanidaeB 479s Taxon 60 -> Megalyra 479s Taxon 61 -> Trigonalidae 479s Taxon 62 -> Chalcidoidea 479s Taxon 63 -> Evanioidea 479s Taxon 64 -> Ichneumonidae 479s Taxon 65 -> Cynipoidea 479s Taxon 66 -> ApoideaA 479s Taxon 67 -> ApoideaB 479s Taxon 68 -> ApoideaC 479s Taxon 69 -> Vespidae 479s Taxon 70 -> Triassoxyela 479s Taxon 71 -> Asioxyela 479s Taxon 72 -> Nigrimonticola 479s Taxon 73 -> Gigantoxyelinae 479s Taxon 74 -> Spathoxyela 479s Taxon 75 -> Xyela_mesozoica 479s Taxon 76 -> Angaridyela 479s Taxon 77 -> Xyelotoma 479s Taxon 78 -> Undatoma 479s Taxon 79 -> Dahuratoma 479s Taxon 80 -> Mesolyda 479s Taxon 81 -> Turgidontes 479s Taxon 82 -> Aulidontes 479s Taxon 83 -> Protosirex 479s Taxon 84 -> Aulisca 479s Taxon 85 -> Anaxyela 479s Taxon 86 -> Syntexyela 479s Taxon 87 -> Karatavites 479s Taxon 88 -> Stephanogaster 479s Taxon 89 -> Leptephialtites 479s Taxon 90 -> Cleistogaster 479s Taxon 91 -> Sepulca 479s Taxon 92 -> Onochoius 479s Taxon 93 -> Ghilarella 479s Taxon 94 -> Paroryssus 479s Taxon 95 -> Praeoryssus 479s Taxon 96 -> Mesorussus 479s Taxon 97 -> Trematothorax 479s Taxon 98 -> Thoracotrema 479s Taxon 99 -> Prosyntexis 479s Taxon 100 -> Kulbastavia 479s Taxon 101 -> Brachysyntexis 479s Taxon 102 -> Symphytopterus 479s Taxon 103 -> Eoxyela 479s Taxon 104 -> Liadoxyela 479s Taxon 105 -> Abrotoxyela 479s Taxon 106 -> Pseudoxyelocerus 479s Taxon 107 -> Palaeathalia 479s Taxon 108 -> Ferganolyda 479s Taxon 109 -> PamphiliidaeUndesc 479s Taxon 110 -> Rudisiricius 479s Taxon 111 -> Sogutia 479s Taxon 112 -> Xyelula 479s Taxon 113 -> Brigittepterus 479s Taxon 114 -> Grimmaratavites 479s Successfully read matrix 479s Matrix contains polymorphisms, interpreted as ambiguity 479s Setting default partition, dividing characters into 2 parts 479s Setting model defaults 479s Seed (for generating default start values) = 1710888946 479s WARNING: There are 2 characters incompatible with the specified 479s coding bias. These characters will be excluded. 479s Setting output file names to "hymfossil.nex.run." 479s Exiting data block 479s Reading mrbayes block 479s Defining charset called 'MV' 479s Defining charset called 'MS' 479s Defining charset called '12S' 479s Defining charset called '16S' 479s Defining charset called '18S' 479s Defining charset called '28S' 479s Defining charset called 'CO1' 479s Defining charset called 'CO1_12' 479s Defining charset called 'CO1_3' 479s Defining charset called 'Ef1aF2' 479s Defining charset called 'Ef1aF2_12' 479s Defining charset called 'Ef1aF2_3' 479s Defining charset called 'Ef1aF1' 479s Defining charset called 'Ef1aF1_12' 479s Defining charset called 'Ef1aF1_3' 479s Defining charset called 'Ef1a' 479s Defining charset called 'morph_ordered' 479s Defining charset called 'morph_excluded' 479s Defining charset called 'morph_constant' 479s Setting characters to ordered 479s Ctype was applied to 44 standard characters 479s Excluding character(s) 479s WARNING: There are 2 characters incompatible with the specified 479s coding bias. These characters will be excluded. 479s Excluding character(s) 479s Setting outgroup to taxon "Orthoptera" 479s Defining taxset called 'fossils' 479s Defining taxset called 'nomorphodata' 479s Defining taxset called 'nomolecudata' 479s Defining constraint called 'root' 479s Defining constraint called 'Hymenoptera' 479s Defining constraint called 'Holometabola' 479s Defining constraint called 'HolometabolaWithFossils' 479s Defining constraint called 'Pamphilioidea' 479s Defining constraint called 'Siricoidea' 479s Defining constraint called 'Apocrita' 479s Defining constraint called 'Xyelidae' 479s Defining constraint called 'Tenthredinidae' 479s Defining constraint called 'Vespina' 479s Defining partition called 'without_CO1_3' 479s Excluding character(s) 479s Setting without_CO1_3 as the partition, dividing characters into 7 parts. 479s Setting model defaults 479s Seed (for generating default start values) = 1996580225 479s Enabling Coding Variable for partition 1 479s Setting Rates to Gamma for partition 1 479s Successfully set likelihood model parameters to 479s partition 1 (if applicable) 479s Setting Nucmodel to 4by4 for partition 2 479s Setting Nucmodel to 4by4 for partition 3 479s Setting Nucmodel to 4by4 for partition 5 479s Setting Nucmodel to 4by4 for partition 6 479s Setting Nucmodel to 4by4 for partition 7 479s Set state frequency prior to default 479s Setting Nst to 6 for partition 2 479s Setting Nst to 6 for partition 3 479s Setting Nst to 6 for partition 5 479s Setting Nst to 6 for partition 6 479s Setting Nst to 6 for partition 7 479s Setting Rates to Gamma for partition 2 479s Setting Rates to Gamma for partition 3 479s Setting Rates to Gamma for partition 5 479s Setting Rates to Gamma for partition 6 479s Setting Rates to Gamma for partition 7 479s Setting Covarion to No for partition 2 479s Setting Covarion to No for partition 3 479s Setting Covarion to No for partition 5 479s Setting Covarion to No for partition 6 479s Setting Covarion to No for partition 7 479s Successfully set likelihood model parameters to 479s partitions 2, 3, 5, 6, and 7 (if applicable) 479s Setting Nucmodel to 4by4 for partition 4 479s Set state frequency prior to default 479s Setting Nst to 6 for partition 4 479s Setting Rates to Gamma for partition 4 479s Setting Covarion to No for partition 4 479s Successfully set likelihood model parameters to 479s partition 4 (if applicable) 479s Setting Statefreqpr to Fixed(Equal) for partition 4 479s Successfully set prior model parameters to 479s partition 4 (if applicable) 479s Unlinking 479s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 1 479s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 2 479s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 3 479s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 4 479s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 5 479s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 6 479s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting age of taxon 'Triassoxyela' to Uniform(228.00,242.00) 479s Setting age of taxon 'Asioxyela' to Uniform(228.00,242.00) 479s Setting age of taxon 'Nigrimonticola' to Uniform(152.00,163.00) 479s Setting age of taxon 'Gigantoxyelinae' to Uniform(125.00,145.00) 479s Setting age of taxon 'Spathoxyela' to Uniform(125.00,145.00) 479s Setting age of taxon 'Xyela_mesozoica' to Uniform(125.00,145.00) 479s Setting age of taxon 'Angaridyela' to Uniform(125.00,145.00) 479s Setting age of taxon 'Xyelotoma' to Uniform(152.00,163.00) 479s Setting age of taxon 'Undatoma' to Uniform(145.00,152.00) 479s Setting age of taxon 'Dahuratoma' to Uniform(133.00,135.00) 479s Setting age of taxon 'Mesolyda' to Uniform(152.00,163.00) 479s Setting age of taxon 'Turgidontes' to Uniform(133.00,135.00) 479s Setting age of taxon 'Aulidontes' to Uniform(152.00,163.00) 479s Setting age of taxon 'Protosirex' to Uniform(152.00,163.00) 479s Setting age of taxon 'Aulisca' to Uniform(152.00,163.00) 479s Setting age of taxon 'Anaxyela' to Uniform(152.00,163.00) 479s Setting age of taxon 'Syntexyela' to Uniform(152.00,163.00) 479s Setting age of taxon 'Karatavites' to Uniform(152.00,163.00) 479s Setting age of taxon 'Stephanogaster' to Uniform(152.00,163.00) 479s Setting age of taxon 'Leptephialtites' to Uniform(152.00,163.00) 479s Setting age of taxon 'Cleistogaster' to Uniform(168.00,191.00) 479s Setting age of taxon 'Sepulca' to Uniform(152.00,163.00) 479s Setting age of taxon 'Onochoius' to Uniform(125.00,145.00) 479s Setting age of taxon 'Ghilarella' to Uniform(113.00,125.00) 479s Setting age of taxon 'Paroryssus' to Uniform(152.00,163.00) 479s Setting age of taxon 'Praeoryssus' to Uniform(152.00,163.00) 479s Setting age of taxon 'Mesorussus' to Uniform(94.00,100.00) 479s Setting age of taxon 'Trematothorax' to Uniform(125.00,145.00) 479s Setting age of taxon 'Thoracotrema' to Uniform(113.00,125.00) 479s Setting age of taxon 'Prosyntexis' to Uniform(80.00,86.00) 479s Setting age of taxon 'Kulbastavia' to Uniform(152.00,163.00) 479s Setting age of taxon 'Brachysyntexis' to Uniform(152.00,163.00) 479s Setting age of taxon 'Symphytopterus' to Uniform(152.00,163.00) 479s Setting age of taxon 'Eoxyela' to Uniform(168.00,191.00) 479s Setting age of taxon 'Liadoxyela' to Uniform(168.00,191.00) 479s Setting age of taxon 'Abrotoxyela' to Uniform(161.00,168.00) 479s Setting age of taxon 'Pseudoxyelocerus' to Uniform(182.00,183.00) 479s Setting age of taxon 'Palaeathalia' to Uniform(125.00,145.00) 479s Setting age of taxon 'Ferganolyda' to Uniform(168.00,191.00) 479s Setting age of taxon 'PamphiliidaeUndesc' to Uniform(161.00,168.00) 479s Setting age of taxon 'Rudisiricius' to Uniform(161.00,168.00) 479s Setting age of taxon 'Sogutia' to Uniform(174.00,201.00) 479s Setting age of taxon 'Xyelula' to Uniform(182.00,183.00) 479s Setting age of taxon 'Brigittepterus' to Uniform(182.00,183.00) 479s Setting age of taxon 'Grimmaratavites' to Uniform(182.00,183.00) 479s Excluding taxa 479s Setting Brlenspr to Clock:Fossilization for partition 1 479s Setting Brlenspr to Clock:Fossilization for partition 2 479s Setting Brlenspr to Clock:Fossilization for partition 3 479s Setting Brlenspr to Clock:Fossilization for partition 4 479s Setting Brlenspr to Clock:Fossilization for partition 5 479s Setting Brlenspr to Clock:Fossilization for partition 6 479s Setting Brlenspr to Clock:Fossilization for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Speciationpr to Exponential(20.00) for partition 1 479s Setting Speciationpr to Exponential(20.00) for partition 2 479s Setting Speciationpr to Exponential(20.00) for partition 3 479s Setting Speciationpr to Exponential(20.00) for partition 4 479s Setting Speciationpr to Exponential(20.00) for partition 5 479s Setting Speciationpr to Exponential(20.00) for partition 6 479s Setting Speciationpr to Exponential(20.00) for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Extinctionpr to Beta(1.00,1.00) for partition 1 479s Setting Extinctionpr to Beta(1.00,1.00) for partition 2 479s Setting Extinctionpr to Beta(1.00,1.00) for partition 3 479s Setting Extinctionpr to Beta(1.00,1.00) for partition 4 479s Setting Extinctionpr to Beta(1.00,1.00) for partition 5 479s Setting Extinctionpr to Beta(1.00,1.00) for partition 6 479s Setting Extinctionpr to Beta(1.00,1.00) for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Fossilizationpr to Beta(1.00,1.00) for partition 1 479s Setting Fossilizationpr to Beta(1.00,1.00) for partition 2 479s Setting Fossilizationpr to Beta(1.00,1.00) for partition 3 479s Setting Fossilizationpr to Beta(1.00,1.00) for partition 4 479s Setting Fossilizationpr to Beta(1.00,1.00) for partition 5 479s Setting Fossilizationpr to Beta(1.00,1.00) for partition 6 479s Setting Fossilizationpr to Beta(1.00,1.00) for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Sampleprob to 0.00050000 for partition 1 479s Setting Sampleprob to 0.00050000 for partition 2 479s Setting Sampleprob to 0.00050000 for partition 3 479s Setting Sampleprob to 0.00050000 for partition 4 479s Setting Sampleprob to 0.00050000 for partition 5 479s Setting Sampleprob to 0.00050000 for partition 6 479s Setting Sampleprob to 0.00050000 for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting SampleStrat to Diversity for partition 1 479s Setting SampleStrat to Diversity for partition 2 479s Setting SampleStrat to Diversity for partition 3 479s Setting SampleStrat to Diversity for partition 4 479s Setting SampleStrat to Diversity for partition 5 479s Setting SampleStrat to Diversity for partition 6 479s Setting SampleStrat to Diversity for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Topologypr to Constraints for partition 1 479s Setting Topologypr to Constraints for partition 2 479s Setting Topologypr to Constraints for partition 3 479s Setting Topologypr to Constraints for partition 4 479s Setting Topologypr to Constraints for partition 5 479s Setting Topologypr to Constraints for partition 6 479s Setting Topologypr to Constraints for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting age of constraint node 'root' to Offsetexponential(315.00,396.00) 479s Setting age of constraint node 'HolometabolaWithFossils' to Offsetexponential(302.00,396.00) 479s Setting Nodeagepr to Calibrated for partition 1 479s Setting Nodeagepr to Calibrated for partition 2 479s Setting Nodeagepr to Calibrated for partition 3 479s Setting Nodeagepr to Calibrated for partition 4 479s Setting Nodeagepr to Calibrated for partition 5 479s Setting Nodeagepr to Calibrated for partition 6 479s Setting Nodeagepr to Calibrated for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Clockvarpr to Igr for partition 1 479s Setting Clockvarpr to Igr for partition 2 479s Setting Clockvarpr to Igr for partition 3 479s Setting Clockvarpr to Igr for partition 4 479s Setting Clockvarpr to Igr for partition 5 479s Setting Clockvarpr to Igr for partition 6 479s Setting Clockvarpr to Igr for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Igrvarpr to Exponential(37.00) for partition 1 479s Setting Igrvarpr to Exponential(37.00) for partition 2 479s Setting Igrvarpr to Exponential(37.00) for partition 3 479s Setting Igrvarpr to Exponential(37.00) for partition 4 479s Setting Igrvarpr to Exponential(37.00) for partition 5 479s Setting Igrvarpr to Exponential(37.00) for partition 6 479s Setting Igrvarpr to Exponential(37.00) for partition 7 479s Successfully set prior model parameters to all 479s applicable data partitions 479s Setting Clockratepr to Lognormal(-7.10,0.50) 479s Setting Clockratepr to Lognormal(-7.10,0.50) 479s Setting Clockratepr to Lognormal(-7.10,0.50) 479s Setting Clockratepr to Lognormal(-7.10,0.50) 479s Setting Clockratepr to Lognormal(-7.10,0.50) 479s Setting Clockratepr to Lognormal(-7.10,0.50) 479s Setting Clockratepr to Lognormal(-7.10,0.50) 479s Successfully set prior model parameters to all 479s applicable data partitions 479s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 479s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 479s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 479s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 479s Setting number of runs to 4 479s Setting heating parameter to 0.070000 479s Setting number of generations to 100000000 479s Setting sample frequency to 1000 479s Setting print frequency to 10000 479s Setting diagnosing frequency to 50000 479s Setting chain output file names to "hymfossil.nex.run.

" 479s Successfully set chain parameters 479s Exiting mrbayes block 479s Reached end of file 479s 479s Tasks completed, exiting program because mode is noninteractive 479s To return control to the command line after completion of file processing, 479s set mode to interactive with 'mb -i ' (i is for interactive) 479s or use 'set mode=interactive' 479s 479s 479s 479s MrBayes 3.2.7a powerpc64le 479s 479s (Bayesian Analysis of Phylogeny) 479s 479s Distributed under the GNU General Public License 479s 479s 479s Type "help" or "help " for information 479s on the commands that are available. 479s 479s Type "about" for authorship and general 479s information about the program. 479s 479s 479s 479s Executing file "avian_ovomucoids.nex" 479s DOS line termination 479s Longest line length = 129 479s Parsing file 479s Expecting NEXUS formatted file 479s Reading data block 479s Allocated taxon set 479s Allocated matrix 479s Defining new matrix with 89 taxa and 88 characters 479s Data is Protein 479s Missing data coded as ? 479s Gaps coded as - 479s Matching characters coded as . 479s Taxon 1 -> Struthio_camelus 479s Taxon 2 -> Rhea_americana 479s Taxon 3 -> Pterocnemia_pennata 479s Taxon 4 -> Casuarius_casuarius 479s Taxon 5 -> Dromaius_novaehollandiae 479s Taxon 6 -> Nothoprocta_cinerascens 479s Taxon 7 -> Eudromia_elegans 479s Taxon 8 -> Pygoscelis_adeliae_f 479s Taxon 9 -> Pygoscelis_adeliae_y 479s Taxon 10 -> Spheniscus_humboldti 479s Taxon 11 -> Phalacrocorax_sulcirostris 479s Taxon 12 -> Anhinga_novaehollandeae 479s Taxon 13 -> Nycticorax_nycticorax 479s Taxon 14 -> Chauna_chavaria 479s Taxon 15 -> Anseranas_semipalmata 479s Taxon 16 -> Dendrocygna_arcuata 479s Taxon 17 -> Dendrocygna_autumnalis 479s Taxon 18 -> Dendrocygna_eytoni_d 479s Taxon 19 -> Dendrocygna_eytoni_e 479s Taxon 20 -> Dendrocygna_viduata 479s Taxon 21 -> Coscoroba_coscoroba 479s Taxon 22 -> Cygnus_atratus 479s Taxon 23 -> Goose 479s Taxon 24 -> Anser_indicus 479s Taxon 25 -> Branta_canadensis 479s Taxon 26 -> Cereopsis_novaehollandiae 479s Taxon 27 -> Chloephaga_picta 479s Taxon 28 -> Duck 479s Taxon 29 -> Anas_platyrhynchos 479s Taxon 30 -> Megapodius_freycinet 479s Taxon 31 -> Leipoa_ocellata 479s Taxon 32 -> Ortalis_vetula 479s Taxon 33 -> Penelope_jacquacu 479s Taxon 34 -> Penelope_superciliaris 479s Taxon 35 -> Bonasa_umbellus 479s Taxon 36 -> Tympanuchus_cupido 479s Taxon 37 -> Oreortyx_pictus 479s Taxon 38 -> Callipepla_squamata_n 479s Taxon 39 -> Callipepla_squamata_s 479s Taxon 40 -> Lophortyx_californicus 479s Taxon 41 -> Colinus_virginianus 479s Taxon 42 -> Cyrtonyx_montezumae_l 479s Taxon 43 -> Cyrtonyx_montezumae_s 479s Taxon 44 -> Alectoris_chukar 479s Taxon 45 -> Alectoris_rufa 479s Taxon 46 -> Francolinus_afer 479s Taxon 47 -> Francolinus_erckelii 479s Taxon 48 -> Francolinus_coqui_v 479s Taxon 49 -> Francolinus_coqui_a 479s Taxon 50 -> Francolinus_francolinus_a 479s Taxon 51 -> Francolinus_francolinus_v 479s Taxon 52 -> Francolinus_pondicerianus 479s Taxon 53 -> Perdix_perdix 479s Taxon 54 -> Coturnix_delegorguei 479s Taxon 55 -> Coturnix_coturnix_japonica_1 479s Taxon 56 -> Coturnix_coturnix_japonica_2 479s Taxon 57 -> Arborophilia_torqueola 479s Taxon 58 -> Bambusicola_thoracica 479s Taxon 59 -> Tragopan_satyra 479s Taxon 60 -> Tragopan_temmincki 479s Taxon 61 -> Lophophorus_impejanus 479s Taxon 62 -> Crossoptilon_auritum 479s Taxon 63 -> Lophura_edwardsi 479s Taxon 64 -> Lophura_ignita 479s Taxon 65 -> Gallus_gallus 479s Taxon 66 -> Grey_jungle_fowl 479s Taxon 67 -> Phasianus_colchicus 479s Taxon 68 -> Syrmaticus_ellioti 479s Taxon 69 -> Syrmaticus_reevesii 479s Taxon 70 -> Chrysolophus_amherstiae 479s Taxon 71 -> Polyplectron_bicalcaratum 479s Taxon 72 -> Argusianus_argus_argus 479s Taxon 73 -> Pavo_cristatus 479s Taxon 74 -> Afropavo_congensis 479s Taxon 75 -> Numida_meleagris 479s Taxon 76 -> Acryllium_vulturinum 479s Taxon 77 -> Meleagris_gallopavo 479s Taxon 78 -> Grus_carunculatus 479s Taxon 79 -> Anthropoides_virgo 479s Taxon 80 -> Grus_vipio 479s Taxon 81 -> Fulica_atra 479s Taxon 82 -> Vanellus_spinosus 479s Taxon 83 -> Larus_rudibundus 479s Taxon 84 -> Turnix_sylvatica 479s Taxon 85 -> Gallirallus_australis 479s Taxon 86 -> Geococcyx_californianus 479s Taxon 87 -> Dacelo_novaeguineae 479s Taxon 88 -> Carpococcyx_renauldi 479s Taxon 89 -> Podargus_strigoides 479s Successfully read matrix 479s Setting default partition (does not divide up characters) 479s Setting model defaults 479s Seed (for generating default start values) = 1710888946 479s Setting output file names to "avian_ovomucoids.nex.run." 479s Exiting data block 479s Reached end of file 479s 479s Tasks completed, exiting program because mode is noninteractive 479s To return control to the command line after completion of file processing, 479s set mode to interactive with 'mb -i ' (i is for interactive) 479s or use 'set mode=interactive' 479s 480s 480s 480s MrBayes 3.2.7a powerpc64le 480s 480s (Bayesian Analysis of Phylogeny) 480s 480s Distributed under the GNU General Public License 480s 480s 480s Type "help" or "help " for information 480s on the commands that are available. 480s 480s Type "about" for authorship and general 480s information about the program. 480s 480s 480s 480s Executing file "codon.nex" 480s DOS line termination 480s Longest line length = 88 480s Parsing file 480s Expecting NEXUS formatted file 480s Reading mrbayes block 480s Setting autoclose to yes 480s Setting nowarnings to yes 480s 480s Executing file "replicase.nex"... 480s 480s DOS line termination 480s Longest line length = 970 480s Parsing file 480s Expecting NEXUS formatted file 480s Reading data block 480s Allocated taxon set 480s Allocated matrix 480s Defining new matrix with 9 taxa and 720 characters 480s Data is Rna 480s Data matrix is not interleaved 480s Gaps coded as - 480s Missing data coded as ? 480s Taxon 1 -> FR 480s Taxon 2 -> MS2 480s Taxon 3 -> GA 480s Taxon 4 -> SP 480s Taxon 5 -> NL95 480s Taxon 6 -> M11 480s Taxon 7 -> MX1 480s Taxon 8 -> QB 480s Taxon 9 -> PP7 480s Successfully read matrix 480s Setting default partition (does not divide up characters) 480s Setting model defaults 480s Seed (for generating default start values) = 1710888946 480s Setting output file names to "replicase.nex.run." 480s Exiting data block 480s Reached end of file 480s 480s Returning execution to calling file ... 480s 480s Setting Nucmodel to Codon 480s Set state frequency prior to default 480s Successfully set likelihood model parameters 480s Setting Nucmodel to Codon 480s Set state frequency prior to default 480s Setting Omegavar to Ny98 480s Successfully set likelihood model parameters 480s Reporting positive selection (if applicable) 480s Reporting site omega values (if applicable) 480s Setting Nucmodel to Codon 480s Set state frequency prior to default 480s Setting Omegavar to M3 480s Successfully set likelihood model parameters 480s Reporting positive selection (if applicable) 480s Setting print frequency to 10 480s Successfully set chain parameters 480s Exiting mrbayes block 480s Reached end of file 480s 480s Tasks completed, exiting program because mode is noninteractive 480s To return control to the command line after completion of file processing, 480s set mode to interactive with 'mb -i ' (i is for interactive) 480s or use 'set mode=interactive' 480s 480s 480s 480s MrBayes 3.2.7a powerpc64le 480s 480s (Bayesian Analysis of Phylogeny) 480s 480s Distributed under the GNU General Public License 480s 480s 480s Type "help" or "help " for information 480s on the commands that are available. 480s 480s Type "about" for authorship and general 480s information about the program. 480s 480s 480s 480s Executing file "cynmix.nex" 480s DOS line termination 480s Longest line length = 217 480s Parsing file 480s Expecting NEXUS formatted file 480s Reading data block 480s Allocated taxon set 480s Allocated matrix 480s Defining new matrix with 32 taxa and 3246 characters 480s Data is Mixed 480s Data for partition 1 is Standard 480s Data for partition 2 is Dna 480s There are a total of 2 default data divisions 480s Data matrix is interleaved 480s Gaps coded as - 480s Missing data coded as ? 480s Taxon 1 -> Ibalia 480s Taxon 2 -> Synergus 480s Taxon 3 -> Periclistus 480s Taxon 4 -> Ceroptres 480s Taxon 5 -> Synophromorpha 480s Taxon 6 -> Xestophanes 480s Taxon 7 -> Diastrophus 480s Taxon 8 -> Gonaspis 480s Taxon 9 -> Liposthenes_gle 480s Taxon 10 -> Liposthenes_ker 480s Taxon 11 -> Antistrophus 480s Taxon 12 -> Rhodus 480s Taxon 13 -> Hedickiana 480s Taxon 14 -> Neaylax 480s Taxon 15 -> Isocolus 480s Taxon 16 -> Aulacidea 480s Taxon 17 -> Panteliella 480s Taxon 18 -> Barbotinia 480s Taxon 19 -> Aylax 480s Taxon 20 -> Iraella 480s Taxon 21 -> Timaspis 480s Taxon 22 -> Phanacis_1 480s Taxon 23 -> Phanacis_2 480s Taxon 24 -> Eschatocerus 480s Taxon 25 -> Diplolepis 480s Taxon 26 -> Pediaspis 480s Taxon 27 -> Plagiotrochus 480s Taxon 28 -> Andricus 480s Taxon 29 -> Neuroterus 480s Taxon 30 -> Biorhiza 480s Taxon 31 -> Parnips 480s Taxon 32 -> Paramblynotus 480s Successfully read matrix 480s Matrix contains polymorphisms, interpreted as ambiguity 480s Setting default partition, dividing characters into 2 parts 480s Setting model defaults 480s Seed (for generating default start values) = 1710888947 480s Setting output file names to "cynmix.nex.run." 480s Exiting data block 480s Reading mrbayes block 480s Defining charset called 'morphology' 480s Defining charset called 'COI' 480s Defining charset called 'EF1a' 480s Defining charset called 'LWRh' 480s Defining charset called '28S' 480s Defining partition called 'favored' 480s Exiting mrbayes block 480s Reached end of file 480s 480s Tasks completed, exiting program because mode is noninteractive 480s To return control to the command line after completion of file processing, 480s set mode to interactive with 'mb -i ' (i is for interactive) 480s or use 'set mode=interactive' 480s 480s 480s 480s MrBayes 3.2.7a powerpc64le 480s 480s (Bayesian Analysis of Phylogeny) 480s 480s Distributed under the GNU General Public License 480s 480s 480s Type "help" or "help " for information 480s on the commands that are available. 480s 480s Type "about" for authorship and general 480s information about the program. 480s 480s 480s 480s Executing file "finch.nex" 480s DOS line termination 480s Longest line length = 665 480s Parsing file 480s Expecting NEXUS formatted file 480s Reading data block 480s Allocated taxon set 480s Allocated matrix 480s Defining new matrix with 4 taxa and 16119 characters 480s Data is Dna 480s Gaps coded as - 480s Missing data coded as ? 480s Matching characters coded as . 480s Taxon 1 -> Q097 480s Taxon 2 -> W097 480s Taxon 3 -> B097 480s Taxon 4 -> O097 480s Successfully read matrix 480s Setting default partition (does not divide up characters) 480s Setting model defaults 480s Seed (for generating default start values) = 1710888947 480s Setting output file names to "finch.nex.run." 480s Exiting data block 480s Reading mrbayes block 480s Setting autoclose to yes 480s Setting nowarnings to yes 480s Setting outgroup to taxon "O097" 480s Defining charset called 'locus097' 480s Defining charset called 'locus098' 480s Defining charset called 'locus118' 480s Defining charset called 'locus119' 480s Defining charset called 'locus120' 480s Defining charset called 'locus122' 480s Defining charset called 'locus130' 480s Defining charset called 'locus104' 480s Defining charset called 'locus129' 480s Defining charset called 'locus143' 480s Defining charset called 'locus146' 480s Defining charset called 'locus111' 480s Defining charset called 'locus135' 480s Defining charset called 'locus148' 480s Defining charset called 'locus182' 480s Defining charset called 'locus200' 480s Defining charset called 'locus209' 480s Defining charset called 'locusB098' 480s Defining charset called 'locus184' 480s Defining charset called 'locus185' 480s Defining charset called 'locus186' 480s Defining charset called 'locus187' 480s Defining charset called 'locus188' 480s Defining charset called 'locus192' 480s Defining charset called 'locus193' 480s Defining charset called 'locus195' 480s Defining charset called 'locus198' 480s Defining charset called 'locus199' 480s Defining charset called 'locusB200' 480s Defining charset called 'locus103' 480s Defining partition called 'genes' 480s Setting genes as the partition, dividing characters into 30 parts. 480s Setting model defaults 480s Seed (for generating default start values) = 1284820886 480s Defining speciespartition called 'test' 480s Setting test as the speciespartition, dividing taxa into 4 species. 480s Setting model defaults 480s Seed (for generating default start values) = 1917059 480s Unlinking 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 1 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 2 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 3 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 4 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 5 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 6 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 7 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 8 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 9 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 10 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 11 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 12 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 13 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 14 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 15 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 16 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 17 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 18 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 19 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 20 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 21 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 22 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 23 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 24 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 25 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 26 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 27 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 28 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 29 480s Setting Brlenspr to Clock:Speciestreecoalescence for partition 30 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Topologypr to Speciestree for partition 1 480s Setting Topologypr to Speciestree for partition 2 480s Setting Topologypr to Speciestree for partition 3 480s Setting Topologypr to Speciestree for partition 4 480s Setting Topologypr to Speciestree for partition 5 480s Setting Topologypr to Speciestree for partition 6 480s Setting Topologypr to Speciestree for partition 7 480s Setting Topologypr to Speciestree for partition 8 480s Setting Topologypr to Speciestree for partition 9 480s Setting Topologypr to Speciestree for partition 10 480s Setting Topologypr to Speciestree for partition 11 480s Setting Topologypr to Speciestree for partition 12 480s Setting Topologypr to Speciestree for partition 13 480s Setting Topologypr to Speciestree for partition 14 480s Setting Topologypr to Speciestree for partition 15 480s Setting Topologypr to Speciestree for partition 16 480s Setting Topologypr to Speciestree for partition 17 480s Setting Topologypr to Speciestree for partition 18 480s Setting Topologypr to Speciestree for partition 19 480s Setting Topologypr to Speciestree for partition 20 480s Setting Topologypr to Speciestree for partition 21 480s Setting Topologypr to Speciestree for partition 22 480s Setting Topologypr to Speciestree for partition 23 480s Setting Topologypr to Speciestree for partition 24 480s Setting Topologypr to Speciestree for partition 25 480s Setting Topologypr to Speciestree for partition 26 480s Setting Topologypr to Speciestree for partition 27 480s Setting Topologypr to Speciestree for partition 28 480s Setting Topologypr to Speciestree for partition 29 480s Setting Topologypr to Speciestree for partition 30 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Popvarpr to Variable for partition 1 480s Setting Popvarpr to Variable for partition 2 480s Setting Popvarpr to Variable for partition 3 480s Setting Popvarpr to Variable for partition 4 480s Setting Popvarpr to Variable for partition 5 480s Setting Popvarpr to Variable for partition 6 480s Setting Popvarpr to Variable for partition 7 480s Setting Popvarpr to Variable for partition 8 480s Setting Popvarpr to Variable for partition 9 480s Setting Popvarpr to Variable for partition 10 480s Setting Popvarpr to Variable for partition 11 480s Setting Popvarpr to Variable for partition 12 480s Setting Popvarpr to Variable for partition 13 480s Setting Popvarpr to Variable for partition 14 480s Setting Popvarpr to Variable for partition 15 480s Setting Popvarpr to Variable for partition 16 480s Setting Popvarpr to Variable for partition 17 480s Setting Popvarpr to Variable for partition 18 480s Setting Popvarpr to Variable for partition 19 480s Setting Popvarpr to Variable for partition 20 480s Setting Popvarpr to Variable for partition 21 480s Setting Popvarpr to Variable for partition 22 480s Setting Popvarpr to Variable for partition 23 480s Setting Popvarpr to Variable for partition 24 480s Setting Popvarpr to Variable for partition 25 480s Setting Popvarpr to Variable for partition 26 480s Setting Popvarpr to Variable for partition 27 480s Setting Popvarpr to Variable for partition 28 480s Setting Popvarpr to Variable for partition 29 480s Setting Popvarpr to Variable for partition 30 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 1 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 2 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 3 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 4 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 5 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 6 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 7 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 8 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 9 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 10 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 11 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 12 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 13 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 14 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 15 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 16 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 17 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 18 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 19 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 20 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 21 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 22 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 23 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 24 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 25 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 26 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 27 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 28 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 29 480s Setting Popsizepr to Gamma(1.00,100.00) for partition 30 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Exiting mrbayes block 480s Reached end of file 480s 480s Tasks completed, exiting program because mode is noninteractive 480s To return control to the command line after completion of file processing, 480s set mode to interactive with 'mb -i ' (i is for interactive) 480s or use 'set mode=interactive' 480s 480s 480s 480s MrBayes 3.2.7a powerpc64le 480s 480s (Bayesian Analysis of Phylogeny) 480s 480s Distributed under the GNU General Public License 480s 480s 480s Type "help" or "help " for information 480s on the commands that are available. 480s 480s Type "about" for authorship and general 480s information about the program. 480s 480s 480s 480s Executing file "hymfossil.nex" 480s UNIX line termination 480s Longest line length = 1117 480s Parsing file 480s Expecting NEXUS formatted file 480s Reading data block 480s Allocated taxon set 480s Allocated matrix 480s Defining new matrix with 114 taxa and 5449 characters 480s Data is Mixed 480s Data for partition 1 is Standard 480s Data for partition 2 is Dna 480s There are a total of 2 default data divisions 480s Data matrix is interleaved 480s Gaps coded as - 480s Missing data coded as ? 480s Taxon 1 -> Orthoptera 480s Taxon 2 -> Paraneoptera 480s Taxon 3 -> Chrysopidae 480s Taxon 4 -> Raphidioptera 480s Taxon 5 -> Coleo_Polyphaga 480s Taxon 6 -> Coleo_Adephaga 480s Taxon 7 -> Lepid_Micropterigidae 480s Taxon 8 -> Lepid_Papilionidae 480s Taxon 9 -> Mecoptera 480s Taxon 10 -> Xyela 480s Taxon 11 -> Macroxyela 480s Taxon 12 -> Runaria 480s Taxon 13 -> Paremphytus 480s Taxon 14 -> Blasticotoma 480s Taxon 15 -> Tenthredo 480s Taxon 16 -> Aglaostigma 480s Taxon 17 -> Dolerus 480s Taxon 18 -> Selandria 480s Taxon 19 -> Strongylogaster 480s Taxon 20 -> Monophadnoides 480s Taxon 21 -> Metallus 480s Taxon 22 -> Athalia 480s Taxon 23 -> Taxonus 480s Taxon 24 -> Hoplocampa 480s Taxon 25 -> Nematinus 480s Taxon 26 -> Nematus 480s Taxon 27 -> Cladius 480s Taxon 28 -> Monoctenus 480s Taxon 29 -> Gilpinia 480s Taxon 30 -> Diprion 480s Taxon 31 -> Cimbicinae 480s Taxon 32 -> Abia 480s Taxon 33 -> Corynis 480s Taxon 34 -> Arge 480s Taxon 35 -> Sterictiphora 480s Taxon 36 -> Perga 480s Taxon 37 -> Phylacteophaga 480s Taxon 38 -> Lophyrotoma 480s Taxon 39 -> Acordulecera 480s Taxon 40 -> Decameria 480s Taxon 41 -> Neurotoma 480s Taxon 42 -> Onycholyda 480s Taxon 43 -> Pamphilius 480s Taxon 44 -> Cephalcia 480s Taxon 45 -> Acantholyda 480s Taxon 46 -> Megalodontesc 480s Taxon 47 -> Megalodontessk 480s Taxon 48 -> Cephus 480s Taxon 49 -> Calameuta 480s Taxon 50 -> Hartigia 480s Taxon 51 -> Syntexis 480s Taxon 52 -> Sirex 480s Taxon 53 -> Xeris 480s Taxon 54 -> Urocerus 480s Taxon 55 -> Tremex 480s Taxon 56 -> Xiphydria 480s Taxon 57 -> Orussus 480s Taxon 58 -> StephanidaeA 480s Taxon 59 -> StephanidaeB 480s Taxon 60 -> Megalyra 480s Taxon 61 -> Trigonalidae 480s Taxon 62 -> Chalcidoidea 480s Taxon 63 -> Evanioidea 480s Taxon 64 -> Ichneumonidae 480s Taxon 65 -> Cynipoidea 480s Taxon 66 -> ApoideaA 480s Taxon 67 -> ApoideaB 480s Taxon 68 -> ApoideaC 480s Taxon 69 -> Vespidae 480s Taxon 70 -> Triassoxyela 480s Taxon 71 -> Asioxyela 480s Taxon 72 -> Nigrimonticola 480s Taxon 73 -> Gigantoxyelinae 480s Taxon 74 -> Spathoxyela 480s Taxon 75 -> Xyela_mesozoica 480s Taxon 76 -> Angaridyela 480s Taxon 77 -> Xyelotoma 480s Taxon 78 -> Undatoma 480s Taxon 79 -> Dahuratoma 480s Taxon 80 -> Mesolyda 480s Taxon 81 -> Turgidontes 480s Taxon 82 -> Aulidontes 480s Taxon 83 -> Protosirex 480s Taxon 84 -> Aulisca 480s Taxon 85 -> Anaxyela 480s Taxon 86 -> Syntexyela 480s Taxon 87 -> Karatavites 480s Taxon 88 -> Stephanogaster 480s Taxon 89 -> Leptephialtites 480s Taxon 90 -> Cleistogaster 480s Taxon 91 -> Sepulca 480s Taxon 92 -> Onochoius 480s Taxon 93 -> Ghilarella 480s Taxon 94 -> Paroryssus 480s Taxon 95 -> Praeoryssus 480s Taxon 96 -> Mesorussus 480s Taxon 97 -> Trematothorax 480s Taxon 98 -> Thoracotrema 480s Taxon 99 -> Prosyntexis 480s Taxon 100 -> Kulbastavia 480s Taxon 101 -> Brachysyntexis 480s Taxon 102 -> Symphytopterus 480s Taxon 103 -> Eoxyela 480s Taxon 104 -> Liadoxyela 480s Taxon 105 -> Abrotoxyela 480s Taxon 106 -> Pseudoxyelocerus 480s Taxon 107 -> Palaeathalia 480s Taxon 108 -> Ferganolyda 480s Taxon 109 -> PamphiliidaeUndesc 480s Taxon 110 -> Rudisiricius 480s Taxon 111 -> Sogutia 480s Taxon 112 -> Xyelula 480s Taxon 113 -> Brigittepterus 480s Taxon 114 -> Grimmaratavites 480s Successfully read matrix 480s Matrix contains polymorphisms, interpreted as ambiguity 480s Setting default partition, dividing characters into 2 parts 480s Setting model defaults 480s Seed (for generating default start values) = 1710888947 480s WARNING: There are 2 characters incompatible with the specified 480s coding bias. These characters will be excluded. 480s Setting output file names to "hymfossil.nex.run." 480s Exiting data block 480s Reading mrbayes block 480s Defining charset called 'MV' 480s Defining charset called 'MS' 480s Defining charset called '12S' 480s Defining charset called '16S' 480s Defining charset called '18S' 480s Defining charset called '28S' 480s Defining charset called 'CO1' 480s Defining charset called 'CO1_12' 480s Defining charset called 'CO1_3' 480s Defining charset called 'Ef1aF2' 480s Defining charset called 'Ef1aF2_12' 480s Defining charset called 'Ef1aF2_3' 480s Defining charset called 'Ef1aF1' 480s Defining charset called 'Ef1aF1_12' 480s Defining charset called 'Ef1aF1_3' 480s Defining charset called 'Ef1a' 480s Defining charset called 'morph_ordered' 480s Defining charset called 'morph_excluded' 480s Defining charset called 'morph_constant' 480s Setting characters to ordered 480s Ctype was applied to 44 standard characters 480s Excluding character(s) 480s WARNING: There are 2 characters incompatible with the specified 480s coding bias. These characters will be excluded. 480s Excluding character(s) 480s Setting outgroup to taxon "Orthoptera" 480s Defining taxset called 'fossils' 480s Defining taxset called 'nomorphodata' 480s Defining taxset called 'nomolecudata' 480s Defining constraint called 'root' 480s Defining constraint called 'Hymenoptera' 480s Defining constraint called 'Holometabola' 480s Defining constraint called 'HolometabolaWithFossils' 480s Defining constraint called 'Pamphilioidea' 480s Defining constraint called 'Siricoidea' 480s Defining constraint called 'Apocrita' 480s Defining constraint called 'Xyelidae' 480s Defining constraint called 'Tenthredinidae' 480s Defining constraint called 'Vespina' 480s Defining partition called 'without_CO1_3' 480s Excluding character(s) 480s Setting without_CO1_3 as the partition, dividing characters into 7 parts. 480s Setting model defaults 480s Seed (for generating default start values) = 137835614 480s Enabling Coding Variable for partition 1 480s Setting Rates to Gamma for partition 1 480s Successfully set likelihood model parameters to 480s partition 1 (if applicable) 480s Setting Nucmodel to 4by4 for partition 2 480s Setting Nucmodel to 4by4 for partition 3 480s Setting Nucmodel to 4by4 for partition 5 480s Setting Nucmodel to 4by4 for partition 6 480s Setting Nucmodel to 4by4 for partition 7 480s Set state frequency prior to default 480s Setting Nst to 6 for partition 2 480s Setting Nst to 6 for partition 3 480s Setting Nst to 6 for partition 5 480s Setting Nst to 6 for partition 6 480s Setting Nst to 6 for partition 7 480s Setting Rates to Gamma for partition 2 480s Setting Rates to Gamma for partition 3 480s Setting Rates to Gamma for partition 5 480s Setting Rates to Gamma for partition 6 480s Setting Rates to Gamma for partition 7 480s Setting Covarion to No for partition 2 480s Setting Covarion to No for partition 3 480s Setting Covarion to No for partition 5 480s Setting Covarion to No for partition 6 480s Setting Covarion to No for partition 7 480s Successfully set likelihood model parameters to 480s partitions 2, 3, 5, 6, and 7 (if applicable) 480s Setting Nucmodel to 4by4 for partition 4 480s Set state frequency prior to default 480s Setting Nst to 6 for partition 4 480s Setting Rates to Gamma for partition 4 480s Setting Covarion to No for partition 4 480s Successfully set likelihood model parameters to 480s partition 4 (if applicable) 480s Setting Statefreqpr to Fixed(Equal) for partition 4 480s Successfully set prior model parameters to 480s partition 4 (if applicable) 480s Unlinking 480s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 1 480s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 2 480s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 3 480s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 4 480s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 5 480s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 6 480s Setting Ratepr to Variable [Dirichlet(..,1,..)] for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting age of taxon 'Triassoxyela' to Uniform(228.00,242.00) 480s Setting age of taxon 'Asioxyela' to Uniform(228.00,242.00) 480s Setting age of taxon 'Nigrimonticola' to Uniform(152.00,163.00) 480s Setting age of taxon 'Gigantoxyelinae' to Uniform(125.00,145.00) 480s Setting age of taxon 'Spathoxyela' to Uniform(125.00,145.00) 480s Setting age of taxon 'Xyela_mesozoica' to Uniform(125.00,145.00) 480s Setting age of taxon 'Angaridyela' to Uniform(125.00,145.00) 480s Setting age of taxon 'Xyelotoma' to Uniform(152.00,163.00) 480s Setting age of taxon 'Undatoma' to Uniform(145.00,152.00) 480s Setting age of taxon 'Dahuratoma' to Uniform(133.00,135.00) 480s Setting age of taxon 'Mesolyda' to Uniform(152.00,163.00) 480s Setting age of taxon 'Turgidontes' to Uniform(133.00,135.00) 480s Setting age of taxon 'Aulidontes' to Uniform(152.00,163.00) 480s Setting age of taxon 'Protosirex' to Uniform(152.00,163.00) 480s Setting age of taxon 'Aulisca' to Uniform(152.00,163.00) 480s Setting age of taxon 'Anaxyela' to Uniform(152.00,163.00) 480s Setting age of taxon 'Syntexyela' to Uniform(152.00,163.00) 480s Setting age of taxon 'Karatavites' to Uniform(152.00,163.00) 480s Setting age of taxon 'Stephanogaster' to Uniform(152.00,163.00) 480s Setting age of taxon 'Leptephialtites' to Uniform(152.00,163.00) 480s Setting age of taxon 'Cleistogaster' to Uniform(168.00,191.00) 480s Setting age of taxon 'Sepulca' to Uniform(152.00,163.00) 480s Setting age of taxon 'Onochoius' to Uniform(125.00,145.00) 480s Setting age of taxon 'Ghilarella' to Uniform(113.00,125.00) 480s Setting age of taxon 'Paroryssus' to Uniform(152.00,163.00) 480s Setting age of taxon 'Praeoryssus' to Uniform(152.00,163.00) 480s Setting age of taxon 'Mesorussus' to Uniform(94.00,100.00) 480s Setting age of taxon 'Trematothorax' to Uniform(125.00,145.00) 480s Setting age of taxon 'Thoracotrema' to Uniform(113.00,125.00) 480s Setting age of taxon 'Prosyntexis' to Uniform(80.00,86.00) 480s Setting age of taxon 'Kulbastavia' to Uniform(152.00,163.00) 480s Setting age of taxon 'Brachysyntexis' to Uniform(152.00,163.00) 480s Setting age of taxon 'Symphytopterus' to Uniform(152.00,163.00) 480s Setting age of taxon 'Eoxyela' to Uniform(168.00,191.00) 480s Setting age of taxon 'Liadoxyela' to Uniform(168.00,191.00) 480s Setting age of taxon 'Abrotoxyela' to Uniform(161.00,168.00) 480s Setting age of taxon 'Pseudoxyelocerus' to Uniform(182.00,183.00) 480s Setting age of taxon 'Palaeathalia' to Uniform(125.00,145.00) 480s Setting age of taxon 'Ferganolyda' to Uniform(168.00,191.00) 480s Setting age of taxon 'PamphiliidaeUndesc' to Uniform(161.00,168.00) 480s Setting age of taxon 'Rudisiricius' to Uniform(161.00,168.00) 480s Setting age of taxon 'Sogutia' to Uniform(174.00,201.00) 480s Setting age of taxon 'Xyelula' to Uniform(182.00,183.00) 480s Setting age of taxon 'Brigittepterus' to Uniform(182.00,183.00) 480s Setting age of taxon 'Grimmaratavites' to Uniform(182.00,183.00) 480s Excluding taxa 480s Setting Brlenspr to Clock:Fossilization for partition 1 480s Setting Brlenspr to Clock:Fossilization for partition 2 480s Setting Brlenspr to Clock:Fossilization for partition 3 480s Setting Brlenspr to Clock:Fossilization for partition 4 480s Setting Brlenspr to Clock:Fossilization for partition 5 480s Setting Brlenspr to Clock:Fossilization for partition 6 480s Setting Brlenspr to Clock:Fossilization for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Speciationpr to Exponential(20.00) for partition 1 480s Setting Speciationpr to Exponential(20.00) for partition 2 480s Setting Speciationpr to Exponential(20.00) for partition 3 480s Setting Speciationpr to Exponential(20.00) for partition 4 480s Setting Speciationpr to Exponential(20.00) for partition 5 480s Setting Speciationpr to Exponential(20.00) for partition 6 480s Setting Speciationpr to Exponential(20.00) for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Extinctionpr to Beta(1.00,1.00) for partition 1 480s Setting Extinctionpr to Beta(1.00,1.00) for partition 2 480s Setting Extinctionpr to Beta(1.00,1.00) for partition 3 480s Setting Extinctionpr to Beta(1.00,1.00) for partition 4 480s Setting Extinctionpr to Beta(1.00,1.00) for partition 5 480s Setting Extinctionpr to Beta(1.00,1.00) for partition 6 480s Setting Extinctionpr to Beta(1.00,1.00) for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Fossilizationpr to Beta(1.00,1.00) for partition 1 480s Setting Fossilizationpr to Beta(1.00,1.00) for partition 2 480s Setting Fossilizationpr to Beta(1.00,1.00) for partition 3 480s Setting Fossilizationpr to Beta(1.00,1.00) for partition 4 480s Setting Fossilizationpr to Beta(1.00,1.00) for partition 5 480s Setting Fossilizationpr to Beta(1.00,1.00) for partition 6 480s Setting Fossilizationpr to Beta(1.00,1.00) for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Sampleprob to 0.00050000 for partition 1 480s Setting Sampleprob to 0.00050000 for partition 2 480s Setting Sampleprob to 0.00050000 for partition 3 480s Setting Sampleprob to 0.00050000 for partition 4 480s Setting Sampleprob to 0.00050000 for partition 5 480s Setting Sampleprob to 0.00050000 for partition 6 480s Setting Sampleprob to 0.00050000 for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting SampleStrat to Diversity for partition 1 480s Setting SampleStrat to Diversity for partition 2 480s Setting SampleStrat to Diversity for partition 3 480s Setting SampleStrat to Diversity for partition 4 480s Setting SampleStrat to Diversity for partition 5 480s Setting SampleStrat to Diversity for partition 6 480s Setting SampleStrat to Diversity for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Topologypr to Constraints for partition 1 480s Setting Topologypr to Constraints for partition 2 480s Setting Topologypr to Constraints for partition 3 480s Setting Topologypr to Constraints for partition 4 480s Setting Topologypr to Constraints for partition 5 480s Setting Topologypr to Constraints for partition 6 480s Setting Topologypr to Constraints for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting age of constraint node 'root' to Offsetexponential(315.00,396.00) 480s Setting age of constraint node 'HolometabolaWithFossils' to Offsetexponential(302.00,396.00) 480s Setting Nodeagepr to Calibrated for partition 1 480s Setting Nodeagepr to Calibrated for partition 2 480s Setting Nodeagepr to Calibrated for partition 3 480s Setting Nodeagepr to Calibrated for partition 4 480s Setting Nodeagepr to Calibrated for partition 5 480s Setting Nodeagepr to Calibrated for partition 6 480s Setting Nodeagepr to Calibrated for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Clockvarpr to Igr for partition 1 480s Setting Clockvarpr to Igr for partition 2 480s Setting Clockvarpr to Igr for partition 3 480s Setting Clockvarpr to Igr for partition 4 480s Setting Clockvarpr to Igr for partition 5 480s Setting Clockvarpr to Igr for partition 6 480s Setting Clockvarpr to Igr for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Igrvarpr to Exponential(37.00) for partition 1 480s Setting Igrvarpr to Exponential(37.00) for partition 2 480s Setting Igrvarpr to Exponential(37.00) for partition 3 480s Setting Igrvarpr to Exponential(37.00) for partition 4 480s Setting Igrvarpr to Exponential(37.00) for partition 5 480s Setting Igrvarpr to Exponential(37.00) for partition 6 480s Setting Igrvarpr to Exponential(37.00) for partition 7 480s Successfully set prior model parameters to all 480s applicable data partitions 480s Setting Clockratepr to Lognormal(-7.10,0.50) 480s Setting Clockratepr to Lognormal(-7.10,0.50) 480s Setting Clockratepr to Lognormal(-7.10,0.50) 480s Setting Clockratepr to Lognormal(-7.10,0.50) 480s Setting Clockratepr to Lognormal(-7.10,0.50) 480s Setting Clockratepr to Lognormal(-7.10,0.50) 480s Setting Clockratepr to Lognormal(-7.10,0.50) 480s Successfully set prior model parameters to all 480s applicable data partitions 480s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 480s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 480s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 480s WARNING: Reallocation of zero size attempted. This is probably a bug. Problems may follow. 480s Setting number of runs to 4 480s Setting heating parameter to 0.070000 480s Setting number of generations to 100000000 480s Setting sample frequency to 1000 480s Setting print frequency to 10000 480s Setting diagnosing frequency to 50000 480s Setting chain output file names to "hymfossil.nex.run.

" 480s Successfully set chain parameters 480s Exiting mrbayes block 480s Reached end of file 480s 480s Tasks completed, exiting program because mode is noninteractive 480s To return control to the command line after completion of file processing, 480s set mode to interactive with 'mb -i ' (i is for interactive) 480s or use 'set mode=interactive' 480s 481s autopkgtest [22:55:48]: test run-unit-test: -----------------------] 481s run-unit-test PASS 481s autopkgtest [22:55:48]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 482s autopkgtest [22:55:49]: @@@@@@@@@@@@@@@@@@@@ summary 482s run-unit-test PASS 504s Creating nova instance adt-noble-ppc64el-mrbayes-20240319-224746-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240319.img (UUID 9d87beed-6c32-481f-958d-7469e26317f3)...