0s autopkgtest [15:47:27]: starting date and time: 2024-03-23 15:47:27+0000 0s autopkgtest [15:47:27]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:47:27]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rtgnhb_2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade mirtop --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-20.secgroup --name adt-noble-ppc64el-mirtop-20240323-154727-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 101s autopkgtest [15:49:08]: testbed dpkg architecture: ppc64el 101s autopkgtest [15:49:08]: testbed apt version: 2.7.12 101s autopkgtest [15:49:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 102s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 102s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 103s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 103s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 103s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 103s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 103s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 103s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 103s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 103s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 103s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 103s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 106s Fetched 9623 kB in 3s (3777 kB/s) 107s Reading package lists... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Calculating upgrade... 110s The following packages will be REMOVED: 110s libssl3 110s The following NEW packages will be installed: 110s libssl3t64 110s The following packages have been kept back: 110s curl 110s The following packages will be upgraded: 110s openssl 110s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 110s Need to get 3151 kB of archives. 110s After this operation, 73.7 kB of additional disk space will be used. 110s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 110s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 111s Fetched 3151 kB in 1s (4510 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 111s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 111s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 111s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 111s wget depends on libssl3 (>= 3.0.0). 111s tnftp depends on libssl3 (>= 3.0.0). 111s tcpdump depends on libssl3 (>= 3.0.0). 111s systemd-resolved depends on libssl3 (>= 3.0.0). 111s systemd depends on libssl3 (>= 3.0.0). 111s sudo depends on libssl3 (>= 3.0.0). 111s rsync depends on libssl3 (>= 3.0.0). 111s python3-cryptography depends on libssl3 (>= 3.0.0). 111s openssh-server depends on libssl3 (>= 3.0.10). 111s openssh-client depends on libssl3 (>= 3.0.10). 111s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 111s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 111s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 111s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 111s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 111s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 111s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 111s libnvme1 depends on libssl3 (>= 3.0.0). 111s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 111s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 111s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 111s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 111s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 111s kmod depends on libssl3 (>= 3.0.0). 111s dhcpcd-base depends on libssl3 (>= 3.0.0). 111s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 111s 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 111s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 111s Selecting previously unselected package libssl3t64:ppc64el. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 111s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 111s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 111s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 111s Setting up openssl (3.0.13-0ubuntu2) ... 111s Processing triggers for man-db (2.12.0-3) ... 112s Processing triggers for libc-bin (2.39-0ubuntu6) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 113s sh: Attempting to set up Debian/Ubuntu apt sources automatically 113s sh: Distribution appears to be Ubuntu 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s eatmydata is already the newest version (131-1). 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s dbus is already the newest version (1.14.10-4ubuntu1). 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s rng-tools-debian is already the newest version (2.4). 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s The following packages will be REMOVED: 116s cloud-init* python3-configobj* python3-debconf* 116s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 116s After this operation, 3256 kB disk space will be freed. 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 116s Removing cloud-init (24.1.2-0ubuntu1) ... 116s Removing python3-configobj (5.0.8-3) ... 117s Removing python3-debconf (1.5.86) ... 117s Processing triggers for man-db (2.12.0-3) ... 117s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 117s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 118s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 118s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 118s invoke-rc.d: policy-rc.d denied execution of try-restart. 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s linux-generic is already the newest version (6.8.0-11.11+1). 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 118s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 118s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 121s Reading package lists... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Calculating upgrade... 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s autopkgtest [15:49:29]: rebooting testbed after setup commands that affected boot 160s autopkgtest [15:50:07]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 162s autopkgtest [15:50:09]: @@@@@@@@@@@@@@@@@@@@ apt-source mirtop 165s Get:1 http://ftpmaster.internal/ubuntu noble/universe mirtop 0.4.25-5 (dsc) [1697 B] 165s Get:2 http://ftpmaster.internal/ubuntu noble/universe mirtop 0.4.25-5 (tar) [720 kB] 165s Get:3 http://ftpmaster.internal/ubuntu noble/universe mirtop 0.4.25-5 (diff) [10.7 kB] 165s gpgv: Signature made Sun Feb 4 10:03:14 2024 UTC 165s gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA 165s gpgv: Can't check signature: No public key 165s dpkg-source: warning: cannot verify inline signature for ./mirtop_0.4.25-5.dsc: no acceptable signature found 165s autopkgtest [15:50:12]: testing package mirtop version 0.4.25-5 165s autopkgtest [15:50:12]: build not needed 166s autopkgtest [15:50:13]: test run-unit-test: preparing testbed 170s Reading package lists... 170s Building dependency tree... 170s Reading state information... 170s Starting pkgProblemResolver with broken count: 0 170s Starting 2 pkgProblemResolver with broken count: 0 170s Done 170s The following additional packages will be installed: 170s bedtools fontconfig-config fonts-dejavu-core fonts-dejavu-extra 170s fonts-dejavu-mono fonts-urw-base35 libblas3 libcairo2 libdeflate0 170s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 170s libharfbuzz0b libhts3 libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 170s libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 170s libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 170s libxcb-shm0 libxrender1 mirtop python3-all python3-biopython python3-cairo 170s python3-dateutil python3-freetype python3-iniconfig python3-mirtop 170s python3-numpy python3-packaging python3-pandas python3-pandas-lib 170s python3-pil python3-pluggy python3-pybedtools python3-pysam python3-pytest 170s python3-reportlab python3-rlpycairo samtools seqan-apps sgml-base 170s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 170s Suggested packages: 170s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 170s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 170s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 170s python3-rdflib python3-psycopg2 python3-scipy raxml t-coffee wise gcc 170s gfortran python3-dev python-pandas-doc python3-statsmodels python-pil-doc 170s python-pybedtools-doc pdf-viewer python3-egenix-mxtexttools 170s python-reportlab-doc rl-accel rl-renderpm cwltool cwltool | cwl-runner 170s sgml-base-doc debhelper 170s Recommended packages: 170s python-biopython-doc ncbi-blast+ python3-scipy python3-matplotlib 170s python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 170s python3-html5lib python3-lxml python3-tables python3-olefile 170s The following NEW packages will be installed: 170s autopkgtest-satdep bedtools fontconfig-config fonts-dejavu-core 170s fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 libblas3 libcairo2 170s libdeflate0 libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 170s libharfbuzz0b libhts3 libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 170s libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 170s libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 170s libxcb-shm0 libxrender1 mirtop python3-all python3-biopython python3-cairo 170s python3-dateutil python3-freetype python3-iniconfig python3-mirtop 170s python3-numpy python3-packaging python3-pandas python3-pandas-lib 170s python3-pil python3-pluggy python3-pybedtools python3-pysam python3-pytest 170s python3-reportlab python3-rlpycairo samtools seqan-apps sgml-base 170s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 170s 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. 170s Need to get 76.2 MB/76.2 MB of archives. 170s After this operation, 332 MB of additional disk space will be used. 170s Get:1 /tmp/autopkgtest.4nZhc6/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [744 B] 171s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el sgml-base all 1.31 [11.4 kB] 171s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el bedtools ppc64el 2.31.1+dfsg-2 [782 kB] 171s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 171s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 171s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontenc1 ppc64el 1:1.1.8-1 [15.7 kB] 171s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 171s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 171s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-utils ppc64el 1:7.7+6build2 [112 kB] 171s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 172s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 172s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-extra all 2.37-8 [1947 kB] 172s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 172s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 172s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB] 172s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] 172s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] 172s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 172s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB] 172s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 172s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 172s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 172s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 172s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 172s Get:25 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 172s Get:26 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 172s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB] 172s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 172s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 172s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 172s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] 172s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 172s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB] 172s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 172s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 172s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 172s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 172s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB] 172s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB] 172s Get:40 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pysam ppc64el 0.22.0+ds-1 [5037 kB] 173s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 173s Get:42 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pybedtools ppc64el 0.9.1-1 [12.4 MB] 173s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB] 173s Get:44 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB] 173s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 173s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB] 173s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB] 173s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-cairo ppc64el 1.25.1-2 [162 kB] 173s Get:49 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-freetype all 2.4.0-1 [83.1 kB] 173s Get:50 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 173s Get:51 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-reportlab all 4.1.0-1 [683 kB] 173s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el xml-core all 0.19 [20.3 kB] 173s Get:53 http://ftpmaster.internal/ubuntu noble/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 173s Get:54 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biopython ppc64el 1.81+dfsg-3 [1738 kB] 173s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mirtop all 0.4.25-5 [61.5 kB] 174s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el mirtop all 0.4.25-5 [13.3 kB] 174s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-all ppc64el 3.12.1-0ubuntu2 [904 B] 174s Get:58 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 174s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 23.2-1 [40.6 kB] 174s Get:60 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pluggy all 1.4.0-1 [20.4 kB] 174s Get:61 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pytest all 7.4.4-1 [305 kB] 174s Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools ppc64el 1.19.2-1 [669 kB] 174s Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el seqan-apps ppc64el 2.4.0+dfsg-16 [12.7 MB] 174s Fetched 76.2 MB in 3s (22.7 MB/s) 174s Selecting previously unselected package sgml-base. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 174s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 174s Unpacking sgml-base (1.31) ... 174s Selecting previously unselected package bedtools. 174s Preparing to unpack .../01-bedtools_2.31.1+dfsg-2_ppc64el.deb ... 174s Unpacking bedtools (2.31.1+dfsg-2) ... 174s Selecting previously unselected package fonts-dejavu-mono. 174s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ... 174s Unpacking fonts-dejavu-mono (2.37-8) ... 174s Selecting previously unselected package fonts-dejavu-core. 174s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ... 174s Unpacking fonts-dejavu-core (2.37-8) ... 174s Selecting previously unselected package libfontenc1:ppc64el. 174s Preparing to unpack .../04-libfontenc1_1%3a1.1.8-1_ppc64el.deb ... 174s Unpacking libfontenc1:ppc64el (1:1.1.8-1) ... 174s Selecting previously unselected package x11-common. 174s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu2_all.deb ... 174s Unpacking x11-common (1:7.7+23ubuntu2) ... 174s Selecting previously unselected package xfonts-encodings. 174s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 174s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 174s Selecting previously unselected package xfonts-utils. 174s Preparing to unpack .../07-xfonts-utils_1%3a7.7+6build2_ppc64el.deb ... 174s Unpacking xfonts-utils (1:7.7+6build2) ... 174s Selecting previously unselected package fonts-urw-base35. 174s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 174s Unpacking fonts-urw-base35 (20200910-8) ... 175s Selecting previously unselected package fontconfig-config. 175s Preparing to unpack .../09-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 175s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 175s Selecting previously unselected package fonts-dejavu-extra. 175s Preparing to unpack .../10-fonts-dejavu-extra_2.37-8_all.deb ... 175s Unpacking fonts-dejavu-extra (2.37-8) ... 175s Selecting previously unselected package libblas3:ppc64el. 175s Preparing to unpack .../11-libblas3_3.12.0-3_ppc64el.deb ... 175s Unpacking libblas3:ppc64el (3.12.0-3) ... 175s Selecting previously unselected package libfontconfig1:ppc64el. 175s Preparing to unpack .../12-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 175s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 175s Selecting previously unselected package libpixman-1-0:ppc64el. 175s Preparing to unpack .../13-libpixman-1-0_0.42.2-1_ppc64el.deb ... 175s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ... 175s Selecting previously unselected package libxcb-render0:ppc64el. 175s Preparing to unpack .../14-libxcb-render0_1.15-1_ppc64el.deb ... 175s Unpacking libxcb-render0:ppc64el (1.15-1) ... 175s Selecting previously unselected package libxcb-shm0:ppc64el. 175s Preparing to unpack .../15-libxcb-shm0_1.15-1_ppc64el.deb ... 175s Unpacking libxcb-shm0:ppc64el (1.15-1) ... 175s Selecting previously unselected package libxrender1:ppc64el. 175s Preparing to unpack .../16-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 175s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 175s Selecting previously unselected package libcairo2:ppc64el. 175s Preparing to unpack .../17-libcairo2_1.18.0-1_ppc64el.deb ... 175s Unpacking libcairo2:ppc64el (1.18.0-1) ... 175s Selecting previously unselected package libdeflate0:ppc64el. 175s Preparing to unpack .../18-libdeflate0_1.19-1_ppc64el.deb ... 175s Unpacking libdeflate0:ppc64el (1.19-1) ... 175s Selecting previously unselected package libgfortran5:ppc64el. 175s Preparing to unpack .../19-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 175s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libgomp1:ppc64el. 175s Preparing to unpack .../20-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 175s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 175s Selecting previously unselected package libgraphite2-3:ppc64el. 175s Preparing to unpack .../21-libgraphite2-3_1.3.14-2_ppc64el.deb ... 175s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 175s Selecting previously unselected package libharfbuzz0b:ppc64el. 175s Preparing to unpack .../22-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 175s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 175s Selecting previously unselected package libhtscodecs2:ppc64el. 175s Preparing to unpack .../23-libhtscodecs2_1.6.0-1_ppc64el.deb ... 175s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 175s Selecting previously unselected package libhts3:ppc64el. 175s Preparing to unpack .../24-libhts3_1.18+ds-1_ppc64el.deb ... 175s Unpacking libhts3:ppc64el (1.18+ds-1) ... 175s Selecting previously unselected package libimagequant0:ppc64el. 175s Preparing to unpack .../25-libimagequant0_2.18.0-1_ppc64el.deb ... 175s Unpacking libimagequant0:ppc64el (2.18.0-1) ... 175s Selecting previously unselected package libjpeg-turbo8:ppc64el. 175s Preparing to unpack .../26-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 175s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 175s Selecting previously unselected package libjpeg8:ppc64el. 175s Preparing to unpack .../27-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 175s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 175s Selecting previously unselected package liblapack3:ppc64el. 175s Preparing to unpack .../28-liblapack3_3.12.0-3_ppc64el.deb ... 175s Unpacking liblapack3:ppc64el (3.12.0-3) ... 175s Selecting previously unselected package liblcms2-2:ppc64el. 175s Preparing to unpack .../29-liblcms2-2_2.14-2_ppc64el.deb ... 175s Unpacking liblcms2-2:ppc64el (2.14-2) ... 175s Selecting previously unselected package liblerc4:ppc64el. 175s Preparing to unpack .../30-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 175s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 175s Selecting previously unselected package libraqm0:ppc64el. 175s Preparing to unpack .../31-libraqm0_0.10.1-1_ppc64el.deb ... 175s Unpacking libraqm0:ppc64el (0.10.1-1) ... 175s Selecting previously unselected package libsharpyuv0:ppc64el. 175s Preparing to unpack .../32-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 175s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 175s Selecting previously unselected package libjbig0:ppc64el. 175s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 175s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 175s Selecting previously unselected package libwebp7:ppc64el. 175s Preparing to unpack .../34-libwebp7_1.3.2-0.4_ppc64el.deb ... 175s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 175s Selecting previously unselected package libtiff6:ppc64el. 175s Preparing to unpack .../35-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 175s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 175s Selecting previously unselected package libwebpdemux2:ppc64el. 175s Preparing to unpack .../36-libwebpdemux2_1.3.2-0.4_ppc64el.deb ... 175s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ... 175s Selecting previously unselected package libwebpmux3:ppc64el. 175s Preparing to unpack .../37-libwebpmux3_1.3.2-0.4_ppc64el.deb ... 175s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ... 175s Selecting previously unselected package python3-pysam. 175s Preparing to unpack .../38-python3-pysam_0.22.0+ds-1_ppc64el.deb ... 175s Unpacking python3-pysam (0.22.0+ds-1) ... 176s Selecting previously unselected package python3-numpy. 176s Preparing to unpack .../39-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 176s Unpacking python3-numpy (1:1.24.2-2) ... 176s Selecting previously unselected package python3-pybedtools. 176s Preparing to unpack .../40-python3-pybedtools_0.9.1-1_ppc64el.deb ... 176s Unpacking python3-pybedtools (0.9.1-1) ... 176s Selecting previously unselected package python3-dateutil. 176s Preparing to unpack .../41-python3-dateutil_2.8.2-3_all.deb ... 176s Unpacking python3-dateutil (2.8.2-3) ... 176s Selecting previously unselected package python3-pandas-lib:ppc64el. 176s Preparing to unpack .../42-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_ppc64el.deb ... 176s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 176s Selecting previously unselected package python3-pandas. 176s Preparing to unpack .../43-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 176s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 177s Selecting previously unselected package libopenjp2-7:ppc64el. 177s Preparing to unpack .../44-libopenjp2-7_2.5.0-2_ppc64el.deb ... 177s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ... 177s Selecting previously unselected package python3-pil:ppc64el. 177s Preparing to unpack .../45-python3-pil_10.2.0-1_ppc64el.deb ... 177s Unpacking python3-pil:ppc64el (10.2.0-1) ... 177s Selecting previously unselected package python3-cairo. 177s Preparing to unpack .../46-python3-cairo_1.25.1-2_ppc64el.deb ... 177s Unpacking python3-cairo (1.25.1-2) ... 177s Selecting previously unselected package python3-freetype. 177s Preparing to unpack .../47-python3-freetype_2.4.0-1_all.deb ... 177s Unpacking python3-freetype (2.4.0-1) ... 177s Selecting previously unselected package python3-rlpycairo. 177s Preparing to unpack .../48-python3-rlpycairo_0.3.0-3_all.deb ... 177s Unpacking python3-rlpycairo (0.3.0-3) ... 177s Selecting previously unselected package python3-reportlab. 177s Preparing to unpack .../49-python3-reportlab_4.1.0-1_all.deb ... 177s Unpacking python3-reportlab (4.1.0-1) ... 177s Selecting previously unselected package xml-core. 177s Preparing to unpack .../50-xml-core_0.19_all.deb ... 177s Unpacking xml-core (0.19) ... 177s Selecting previously unselected package w3c-sgml-lib. 177s Preparing to unpack .../51-w3c-sgml-lib_1.3-3_all.deb ... 177s Unpacking w3c-sgml-lib (1.3-3) ... 177s Selecting previously unselected package python3-biopython. 177s Preparing to unpack .../52-python3-biopython_1.81+dfsg-3_ppc64el.deb ... 177s Unpacking python3-biopython (1.81+dfsg-3) ... 177s Selecting previously unselected package python3-mirtop. 177s Preparing to unpack .../53-python3-mirtop_0.4.25-5_all.deb ... 177s Unpacking python3-mirtop (0.4.25-5) ... 177s Selecting previously unselected package mirtop. 177s Preparing to unpack .../54-mirtop_0.4.25-5_all.deb ... 177s Unpacking mirtop (0.4.25-5) ... 177s Selecting previously unselected package python3-all. 177s Preparing to unpack .../55-python3-all_3.12.1-0ubuntu2_ppc64el.deb ... 177s Unpacking python3-all (3.12.1-0ubuntu2) ... 177s Selecting previously unselected package python3-iniconfig. 177s Preparing to unpack .../56-python3-iniconfig_1.1.1-2_all.deb ... 177s Unpacking python3-iniconfig (1.1.1-2) ... 177s Selecting previously unselected package python3-packaging. 177s Preparing to unpack .../57-python3-packaging_23.2-1_all.deb ... 177s Unpacking python3-packaging (23.2-1) ... 177s Selecting previously unselected package python3-pluggy. 177s Preparing to unpack .../58-python3-pluggy_1.4.0-1_all.deb ... 177s Unpacking python3-pluggy (1.4.0-1) ... 177s Selecting previously unselected package python3-pytest. 177s Preparing to unpack .../59-python3-pytest_7.4.4-1_all.deb ... 177s Unpacking python3-pytest (7.4.4-1) ... 177s Selecting previously unselected package samtools. 177s Preparing to unpack .../60-samtools_1.19.2-1_ppc64el.deb ... 177s Unpacking samtools (1.19.2-1) ... 177s Selecting previously unselected package seqan-apps. 177s Preparing to unpack .../61-seqan-apps_2.4.0+dfsg-16_ppc64el.deb ... 177s Unpacking seqan-apps (2.4.0+dfsg-16) ... 178s Selecting previously unselected package autopkgtest-satdep. 178s Preparing to unpack .../62-1-autopkgtest-satdep.deb ... 178s Unpacking autopkgtest-satdep (0) ... 178s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 178s Setting up libgraphite2-3:ppc64el (1.3.14-2) ... 178s Setting up liblcms2-2:ppc64el (2.14-2) ... 178s Setting up python3-iniconfig (1.1.1-2) ... 178s Setting up libpixman-1-0:ppc64el (0.42.2-1) ... 178s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ... 178s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 178s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ... 178s Setting up libxcb-render0:ppc64el (1.15-1) ... 178s Setting up x11-common (1:7.7+23ubuntu2) ... 179s Setting up libdeflate0:ppc64el (1.19-1) ... 179s Setting up python3-all (3.12.1-0ubuntu2) ... 179s Setting up libxcb-shm0:ppc64el (1.15-1) ... 179s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ... 179s Setting up python3-freetype (2.4.0-1) ... 179s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ... 179s Setting up libfontenc1:ppc64el (1:1.1.8-1) ... 179s Setting up libblas3:ppc64el (3.12.0-3) ... 179s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 179s Setting up python3-packaging (23.2-1) ... 179s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 179s Setting up libimagequant0:ppc64el (2.18.0-1) ... 179s Setting up seqan-apps (2.4.0+dfsg-16) ... 179s Setting up fonts-dejavu-mono (2.37-8) ... 179s Setting up fonts-dejavu-core (2.37-8) ... 179s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 179s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 179s Setting up python3-pluggy (1.4.0-1) ... 179s Setting up libwebp7:ppc64el (1.3.2-0.4) ... 179s Setting up fonts-dejavu-extra (2.37-8) ... 179s Setting up libopenjp2-7:ppc64el (2.5.0-2) ... 179s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ... 179s Setting up python3-dateutil (2.8.2-3) ... 179s Setting up sgml-base (1.31) ... 179s Setting up libwebpmux3:ppc64el (1.3.2-0.4) ... 179s Setting up bedtools (2.31.1+dfsg-2) ... 179s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 179s Setting up liblapack3:ppc64el (3.12.0-3) ... 179s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 179s Setting up libhts3:ppc64el (1.18+ds-1) ... 179s Setting up python3-pysam (0.22.0+ds-1) ... 179s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 179s Setting up python3-pytest (7.4.4-1) ... 180s Setting up libwebpdemux2:ppc64el (1.3.2-0.4) ... 180s Setting up xfonts-utils (1:7.7+6build2) ... 180s Setting up samtools (1.19.2-1) ... 180s Setting up libraqm0:ppc64el (0.10.1-1) ... 180s Setting up python3-numpy (1:1.24.2-2) ... 182s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 182s Setting up xml-core (0.19) ... 182s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 182s Setting up python3-pybedtools (0.9.1-1) ... 182s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 182s Setting up fonts-urw-base35 (20200910-8) ... 182s Setting up libcairo2:ppc64el (1.18.0-1) ... 182s Setting up python3-pil:ppc64el (10.2.0-1) ... 183s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 187s Setting up python3-cairo (1.25.1-2) ... 187s Setting up python3-rlpycairo (0.3.0-3) ... 187s Setting up python3-reportlab (4.1.0-1) ... 188s Processing triggers for libc-bin (2.39-0ubuntu6) ... 188s Processing triggers for man-db (2.12.0-3) ... 189s Processing triggers for sgml-base (1.31) ... 189s Setting up w3c-sgml-lib (1.3-3) ... 217s Setting up python3-biopython (1.81+dfsg-3) ... 218s Setting up python3-mirtop (0.4.25-5) ... 218s /usr/lib/python3/dist-packages/mirtop/sql/sql.py:478: SyntaxWarning: invalid escape sequence '\(' 218s print("Usage: mirtop sql --create --gff --db \(Default: mirtop.db\)") 218s Setting up mirtop (0.4.25-5) ... 218s Setting up autopkgtest-satdep (0) ... 221s (Reading database ... 75884 files and directories currently installed.) 221s Removing autopkgtest-satdep (0) ... 222s autopkgtest [15:51:09]: test run-unit-test: [----------------------- 222s Testing with python3.12 in /tmp/autopkgtest.4nZhc6/autopkgtest_tmp: 222s ============================= test session starts ============================== 222s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3 222s cachedir: .pytest_cache 222s rootdir: /tmp/autopkgtest.4nZhc6/autopkgtest_tmp 222s collecting ... collected 69 items 222s 223s test/test_automated_analysis.py::AutomatedAnalysisTest::test_count PASSED [ 1%] 223s test/test_automated_analysis.py::AutomatedAnalysisTest::test_export_fasta PASSED [ 2%] 224s test/test_automated_analysis.py::AutomatedAnalysisTest::test_export_seqbuster PASSED [ 4%] 225s test/test_automated_analysis.py::AutomatedAnalysisTest::test_export_vcf PASSED [ 5%] 225s test/test_automated_analysis.py::AutomatedAnalysisTest::test_merge_bam PASSED [ 7%] 225s test/test_automated_analysis.py::AutomatedAnalysisTest::test_simulate PASSED [ 8%] 226s test/test_automated_analysis.py::AutomatedAnalysisTest::test_spikeins_cmd PASSED [ 10%] 227s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_create_1_cmd PASSED [ 11%] 228s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_create_2_cmd PASSED [ 13%] 228s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectColumns_cmd PASSED [ 14%] 229s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectCount_cmd PASSED [ 15%] 229s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectFilter_cmd PASSED [ 17%] 230s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectLimit_cmd PASSED [ 18%] 230s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectMirna_cmd PASSED [ 20%] 231s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectTextOut_cmd PASSED [ 21%] 231s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_SelectiVariant_cmd PASSED [ 23%] 232s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_descSummary_cmd PASSED [ 24%] 233s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_showColumns_cmd PASSED [ 26%] 233s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_showSchema_cmd PASSED [ 27%] 234s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_showTables_cmd PASSED [ 28%] 234s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_statIsomirsFile_cmd PASSED [ 30%] 235s test/test_automated_analysis.py::AutomatedAnalysisTest::test_sql_query_statIsomirs_cmd PASSED [ 31%] 235s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_bam PASSED [ 33%] 236s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_bam_chunk PASSED [ 34%] 237s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_genomic_bam PASSED [ 36%] 237s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_genomic_bam_low_memory PASSED [ 37%] 238s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_isomirsea PASSED [ 39%] 238s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_manatee PASSED [ 40%] 239s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_optimir PASSED [ 42%] 240s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_seqbuster PASSED [ 43%] 240s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_seqbuster_low_memory PASSED [ 44%] 241s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_annotation_srnabench PASSED [ 46%] 241s test/test_automated_analysis.py::AutomatedAnalysisTest::test_srnaseq_stats PASSED [ 47%] 242s test/test_automated_analysis.py::AutomatedAnalysisTest::test_update_cmd PASSED [ 49%] 242s test/test_automated_analysis.py::AutomatedAnalysisTest::test_validate_cmd PASSED [ 50%] 243s test/test_functions.py::FunctionsTest::test_alignment PASSED [ 52%] 243s test/test_functions.py::FunctionsTest::test_alignment_genomic PASSED [ 53%] 243s test/test_functions.py::FunctionsTest::test_cigar PASSED [ 55%] 243s test/test_functions.py::FunctionsTest::test_class PASSED [ 56%] 243s test/test_functions.py::FunctionsTest::test_code PASSED [ 57%] 243s test/test_functions.py::FunctionsTest::test_code_convert PASSED [ 59%] 243s test/test_functions.py::FunctionsTest::test_collapse PASSED [ 60%] 243s test/test_functions.py::FunctionsTest::test_counts PASSED [ 62%] 243s test/test_functions.py::FunctionsTest::test_database PASSED [ 63%] 243s test/test_functions.py::FunctionsTest::test_error69 PASSED [ 65%] 243s test/test_functions.py::FunctionsTest::test_export_fasta PASSED [ 66%] 243s test/test_functions.py::FunctionsTest::test_gff PASSED [ 68%] 243s test/test_functions.py::FunctionsTest::test_is_sequence PASSED [ 69%] 243s test/test_functions.py::FunctionsTest::test_issue64 PASSED [ 71%] 243s test/test_functions.py::FunctionsTest::test_keep_name PASSED [ 72%] 243s test/test_functions.py::FunctionsTest::test_locala PASSED [ 73%] 243s test/test_functions.py::FunctionsTest::test_merge PASSED [ 75%] 243s test/test_functions.py::FunctionsTest::test_optimir PASSED [ 76%] 243s test/test_functions.py::FunctionsTest::test_prost PASSED [ 78%] 243s test/test_functions.py::FunctionsTest::test_read_hairpin PASSED [ 79%] 243s test/test_functions.py::FunctionsTest::test_read_hairpin_mirgenedb PASSED [ 81%] 243s test/test_functions.py::FunctionsTest::test_read_line PASSED [ 82%] 243s test/test_functions.py::FunctionsTest::test_read_mir2chr PASSED [ 84%] 243s test/test_functions.py::FunctionsTest::test_read_mir2genomic PASSED [ 85%] 243s test/test_functions.py::FunctionsTest::test_reverse PASSED [ 86%] 243s test/test_functions.py::FunctionsTest::test_seqbuster PASSED [ 88%] 243s test/test_functions.py::FunctionsTest::test_spikeins PASSED [ 89%] 243s test/test_functions.py::FunctionsTest::test_sql PASSED [ 91%] 243s test/test_functions.py::FunctionsTest::test_srnabench PASSED [ 92%] 244s test/test_functions.py::FunctionsTest::test_stats PASSED [ 94%] 244s test/test_functions.py::FunctionsTest::test_string_variant PASSED [ 95%] 244s test/test_functions.py::FunctionsTest::test_update PASSED [ 97%] 244s test/test_functions.py::FunctionsTest::test_validator PASSED [ 98%] 244s test/test_functions.py::FunctionsTest::test_variant PASSED [100%] 244s 244s =============================== warnings summary =============================== 244s test/test_functions.py::FunctionsTest::test_alignment 244s /usr/lib/python3/dist-packages/mirtop/libs/config.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 244s import pkg_resources 244s 244s test/test_functions.py::FunctionsTest::test_alignment 244s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 244s warnings.warn( 244s 244s test/test_functions.py::FunctionsTest::test_collapse 244s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 244s return self.run(*args, **kwds) 244s 244s test/test_functions.py::FunctionsTest::test_counts 244s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 244s return self.run(*args, **kwds) 244s 244s test/test_functions.py::FunctionsTest::test_gff 244s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 244s return self.run(*args, **kwds) 244s 244s test/test_functions.py::FunctionsTest::test_read_hairpin 244s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 244s return self.run(*args, **kwds) 244s 244s test/test_functions.py::FunctionsTest::test_sql 244s /usr/lib/python3.12/unittest/case.py:690: DeprecationWarning: It is deprecated to return a value that is not None from a test case (>) 244s return self.run(*args, **kwds) 244s 244s test/test_functions.py::FunctionsTest::test_stats 244s /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC). 244s EPOCH = datetime.datetime.utcfromtimestamp(0) 244s 244s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 244s ======================= 69 passed, 8 warnings in 21.62s ======================== 244s autopkgtest [15:51:31]: test run-unit-test: -----------------------] 245s run-unit-test PASS 245s autopkgtest [15:51:32]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 245s autopkgtest [15:51:32]: test autodep8-python3: preparing testbed 537s autopkgtest [15:56:24]: testbed dpkg architecture: ppc64el 537s autopkgtest [15:56:24]: testbed apt version: 2.7.12 537s autopkgtest [15:56:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup 538s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 538s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 538s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 538s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 538s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 538s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 538s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 538s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 538s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 538s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 539s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 539s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 539s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 542s Fetched 9623 kB in 2s (3850 kB/s) 543s Reading package lists... 545s Reading package lists... 545s Building dependency tree... 545s Reading state information... 546s Calculating upgrade... 546s The following packages will be REMOVED: 546s libssl3 546s The following NEW packages will be installed: 546s libssl3t64 546s The following packages have been kept back: 546s curl 546s The following packages will be upgraded: 546s openssl 546s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 546s Need to get 3151 kB of archives. 546s After this operation, 73.7 kB of additional disk space will be used. 546s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 546s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 547s Fetched 3151 kB in 1s (4453 kB/s) 547s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 547s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 547s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 547s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 547s wget depends on libssl3 (>= 3.0.0). 547s tnftp depends on libssl3 (>= 3.0.0). 547s tcpdump depends on libssl3 (>= 3.0.0). 547s systemd-resolved depends on libssl3 (>= 3.0.0). 547s systemd depends on libssl3 (>= 3.0.0). 547s sudo depends on libssl3 (>= 3.0.0). 547s rsync depends on libssl3 (>= 3.0.0). 547s python3-cryptography depends on libssl3 (>= 3.0.0). 547s openssh-server depends on libssl3 (>= 3.0.10). 547s openssh-client depends on libssl3 (>= 3.0.10). 547s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 547s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 547s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 547s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 547s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 547s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 547s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 547s libnvme1 depends on libssl3 (>= 3.0.0). 547s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 547s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 547s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 547s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 547s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 547s kmod depends on libssl3 (>= 3.0.0). 547s dhcpcd-base depends on libssl3 (>= 3.0.0). 547s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 547s 547s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 547s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 547s Selecting previously unselected package libssl3t64:ppc64el. 547s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 547s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 547s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 547s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 547s Setting up openssl (3.0.13-0ubuntu2) ... 547s Processing triggers for man-db (2.12.0-3) ... 548s Processing triggers for libc-bin (2.39-0ubuntu6) ... 548s Reading package lists... 548s Building dependency tree... 548s Reading state information... 549s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 549s sh: Attempting to set up Debian/Ubuntu apt sources automatically 549s sh: Distribution appears to be Ubuntu 550s Reading package lists... 550s Building dependency tree... 550s Reading state information... 551s eatmydata is already the newest version (131-1). 551s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 551s Reading package lists... 551s Building dependency tree... 551s Reading state information... 551s dbus is already the newest version (1.14.10-4ubuntu1). 551s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 551s Reading package lists... 551s Building dependency tree... 551s Reading state information... 551s rng-tools-debian is already the newest version (2.4). 551s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 551s Reading package lists... 552s Building dependency tree... 552s Reading state information... 552s The following packages will be REMOVED: 552s cloud-init* python3-configobj* python3-debconf* 552s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 552s After this operation, 3256 kB disk space will be freed. 552s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 552s Removing cloud-init (24.1.2-0ubuntu1) ... 553s Removing python3-configobj (5.0.8-3) ... 553s Removing python3-debconf (1.5.86) ... 553s Processing triggers for man-db (2.12.0-3) ... 553s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 553s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 554s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 554s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 554s invoke-rc.d: policy-rc.d denied execution of try-restart. 554s Reading package lists... 554s Building dependency tree... 554s Reading state information... 554s linux-generic is already the newest version (6.8.0-11.11+1). 554s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 555s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 555s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 555s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 558s Reading package lists... 558s Reading package lists... 558s Building dependency tree... 558s Reading state information... 558s Calculating upgrade... 558s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 558s Reading package lists... 559s Building dependency tree... 559s Reading state information... 559s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 559s autopkgtest [15:56:46]: rebooting testbed after setup commands that affected boot 609s Reading package lists... 609s Building dependency tree... 609s Reading state information... 609s Starting pkgProblemResolver with broken count: 0 609s Starting 2 pkgProblemResolver with broken count: 0 609s Done 609s The following additional packages will be installed: 609s fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 609s fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 609s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhts3 libhtscodecs2 609s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 609s liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 609s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python3-all 609s python3-biopython python3-cairo python3-dateutil python3-freetype 609s python3-mirtop python3-numpy python3-pandas python3-pandas-lib python3-pil 609s python3-pybedtools python3-pysam python3-reportlab python3-rlpycairo 609s sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 609s Suggested packages: 610s fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre liblcms2-utils 610s python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 610s phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf 610s python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise 610s gcc gfortran python3-dev python3-pytest python-pandas-doc 610s python3-statsmodels python-pil-doc python-pybedtools-doc pdf-viewer 610s python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm 610s sgml-base-doc debhelper 610s Recommended packages: 610s python-biopython-doc ncbi-blast+ python3-scipy python3-matplotlib 610s python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 610s python3-html5lib python3-lxml python3-tables python3-olefile 610s The following NEW packages will be installed: 610s autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-extra 610s fonts-dejavu-mono fonts-urw-base35 libblas3 libcairo2 libdeflate0 610s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 610s libharfbuzz0b libhts3 libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 610s libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 libraqm0 610s libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 610s libxcb-shm0 libxrender1 python3-all python3-biopython python3-cairo 610s python3-dateutil python3-freetype python3-mirtop python3-numpy 610s python3-pandas python3-pandas-lib python3-pil python3-pybedtools 610s python3-pysam python3-reportlab python3-rlpycairo sgml-base w3c-sgml-lib 610s x11-common xfonts-encodings xfonts-utils xml-core 610s 0 upgraded, 55 newly installed, 0 to remove and 0 not upgraded. 610s Need to get 61.7 MB/61.7 MB of archives. 610s After this operation, 254 MB of additional disk space will be used. 610s Get:1 /tmp/autopkgtest.4nZhc6/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 610s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el sgml-base all 1.31 [11.4 kB] 610s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 610s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 610s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontenc1 ppc64el 1:1.1.8-1 [15.7 kB] 610s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 610s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 610s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-utils ppc64el 1:7.7+6build2 [112 kB] 610s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 611s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 611s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-extra all 2.37-8 [1947 kB] 611s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 611s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 611s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB] 611s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] 611s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] 611s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 611s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB] 611s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 611s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 611s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 611s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 611s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 611s Get:24 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 611s Get:25 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 611s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB] 611s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 611s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 611s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 611s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] 611s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 611s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB] 611s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 611s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 611s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 611s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 611s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB] 611s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB] 612s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-all ppc64el 3.12.1-0ubuntu2 [904 B] 612s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 612s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB] 612s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB] 612s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-cairo ppc64el 1.25.1-2 [162 kB] 612s Get:44 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-freetype all 2.4.0-1 [83.1 kB] 612s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 612s Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-reportlab all 4.1.0-1 [683 kB] 612s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el xml-core all 0.19 [20.3 kB] 612s Get:48 http://ftpmaster.internal/ubuntu noble/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 612s Get:49 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biopython ppc64el 1.81+dfsg-3 [1738 kB] 612s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB] 612s Get:51 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pysam ppc64el 0.22.0+ds-1 [5037 kB] 612s Get:52 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pybedtools ppc64el 0.9.1-1 [12.4 MB] 612s Get:53 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB] 613s Get:54 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 613s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mirtop all 0.4.25-5 [61.5 kB] 613s Fetched 61.7 MB in 3s (19.9 MB/s) 613s Selecting previously unselected package sgml-base. 613s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 613s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 613s Unpacking sgml-base (1.31) ... 613s Selecting previously unselected package fonts-dejavu-mono. 613s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 613s Unpacking fonts-dejavu-mono (2.37-8) ... 613s Selecting previously unselected package fonts-dejavu-core. 613s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 613s Unpacking fonts-dejavu-core (2.37-8) ... 613s Selecting previously unselected package libfontenc1:ppc64el. 613s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1_ppc64el.deb ... 613s Unpacking libfontenc1:ppc64el (1:1.1.8-1) ... 613s Selecting previously unselected package x11-common. 613s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu2_all.deb ... 613s Unpacking x11-common (1:7.7+23ubuntu2) ... 613s Selecting previously unselected package xfonts-encodings. 613s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 613s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 613s Selecting previously unselected package xfonts-utils. 613s Preparing to unpack .../06-xfonts-utils_1%3a7.7+6build2_ppc64el.deb ... 613s Unpacking xfonts-utils (1:7.7+6build2) ... 613s Selecting previously unselected package fonts-urw-base35. 613s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ... 613s Unpacking fonts-urw-base35 (20200910-8) ... 614s Selecting previously unselected package fontconfig-config. 614s Preparing to unpack .../08-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 614s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 614s Selecting previously unselected package fonts-dejavu-extra. 614s Preparing to unpack .../09-fonts-dejavu-extra_2.37-8_all.deb ... 614s Unpacking fonts-dejavu-extra (2.37-8) ... 614s Selecting previously unselected package libblas3:ppc64el. 614s Preparing to unpack .../10-libblas3_3.12.0-3_ppc64el.deb ... 614s Unpacking libblas3:ppc64el (3.12.0-3) ... 614s Selecting previously unselected package libfontconfig1:ppc64el. 614s Preparing to unpack .../11-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 614s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 614s Selecting previously unselected package libpixman-1-0:ppc64el. 614s Preparing to unpack .../12-libpixman-1-0_0.42.2-1_ppc64el.deb ... 614s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ... 614s Selecting previously unselected package libxcb-render0:ppc64el. 614s Preparing to unpack .../13-libxcb-render0_1.15-1_ppc64el.deb ... 614s Unpacking libxcb-render0:ppc64el (1.15-1) ... 614s Selecting previously unselected package libxcb-shm0:ppc64el. 614s Preparing to unpack .../14-libxcb-shm0_1.15-1_ppc64el.deb ... 614s Unpacking libxcb-shm0:ppc64el (1.15-1) ... 614s Selecting previously unselected package libxrender1:ppc64el. 614s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 614s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 614s Selecting previously unselected package libcairo2:ppc64el. 614s Preparing to unpack .../16-libcairo2_1.18.0-1_ppc64el.deb ... 614s Unpacking libcairo2:ppc64el (1.18.0-1) ... 614s Selecting previously unselected package libdeflate0:ppc64el. 614s Preparing to unpack .../17-libdeflate0_1.19-1_ppc64el.deb ... 614s Unpacking libdeflate0:ppc64el (1.19-1) ... 614s Selecting previously unselected package libgfortran5:ppc64el. 614s Preparing to unpack .../18-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 614s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 614s Selecting previously unselected package libgomp1:ppc64el. 614s Preparing to unpack .../19-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 614s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 614s Selecting previously unselected package libgraphite2-3:ppc64el. 614s Preparing to unpack .../20-libgraphite2-3_1.3.14-2_ppc64el.deb ... 614s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 614s Selecting previously unselected package libharfbuzz0b:ppc64el. 614s Preparing to unpack .../21-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 614s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 614s Selecting previously unselected package libhtscodecs2:ppc64el. 614s Preparing to unpack .../22-libhtscodecs2_1.6.0-1_ppc64el.deb ... 614s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 614s Selecting previously unselected package libhts3:ppc64el. 614s Preparing to unpack .../23-libhts3_1.18+ds-1_ppc64el.deb ... 614s Unpacking libhts3:ppc64el (1.18+ds-1) ... 614s Selecting previously unselected package libimagequant0:ppc64el. 614s Preparing to unpack .../24-libimagequant0_2.18.0-1_ppc64el.deb ... 614s Unpacking libimagequant0:ppc64el (2.18.0-1) ... 614s Selecting previously unselected package libjpeg-turbo8:ppc64el. 614s Preparing to unpack .../25-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 614s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 614s Selecting previously unselected package libjpeg8:ppc64el. 614s Preparing to unpack .../26-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 614s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 614s Selecting previously unselected package liblapack3:ppc64el. 614s Preparing to unpack .../27-liblapack3_3.12.0-3_ppc64el.deb ... 614s Unpacking liblapack3:ppc64el (3.12.0-3) ... 614s Selecting previously unselected package liblcms2-2:ppc64el. 614s Preparing to unpack .../28-liblcms2-2_2.14-2_ppc64el.deb ... 614s Unpacking liblcms2-2:ppc64el (2.14-2) ... 614s Selecting previously unselected package liblerc4:ppc64el. 614s Preparing to unpack .../29-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 614s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 614s Selecting previously unselected package libraqm0:ppc64el. 614s Preparing to unpack .../30-libraqm0_0.10.1-1_ppc64el.deb ... 614s Unpacking libraqm0:ppc64el (0.10.1-1) ... 614s Selecting previously unselected package libsharpyuv0:ppc64el. 614s Preparing to unpack .../31-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 614s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 614s Selecting previously unselected package libjbig0:ppc64el. 614s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 614s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 614s Selecting previously unselected package libwebp7:ppc64el. 614s Preparing to unpack .../33-libwebp7_1.3.2-0.4_ppc64el.deb ... 614s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 614s Selecting previously unselected package libtiff6:ppc64el. 614s Preparing to unpack .../34-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 614s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 614s Selecting previously unselected package libwebpdemux2:ppc64el. 614s Preparing to unpack .../35-libwebpdemux2_1.3.2-0.4_ppc64el.deb ... 614s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ... 614s Selecting previously unselected package libwebpmux3:ppc64el. 614s Preparing to unpack .../36-libwebpmux3_1.3.2-0.4_ppc64el.deb ... 614s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ... 614s Selecting previously unselected package python3-all. 614s Preparing to unpack .../37-python3-all_3.12.1-0ubuntu2_ppc64el.deb ... 614s Unpacking python3-all (3.12.1-0ubuntu2) ... 614s Selecting previously unselected package python3-numpy. 614s Preparing to unpack .../38-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 614s Unpacking python3-numpy (1:1.24.2-2) ... 615s Selecting previously unselected package libopenjp2-7:ppc64el. 615s Preparing to unpack .../39-libopenjp2-7_2.5.0-2_ppc64el.deb ... 615s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ... 615s Selecting previously unselected package python3-pil:ppc64el. 615s Preparing to unpack .../40-python3-pil_10.2.0-1_ppc64el.deb ... 615s Unpacking python3-pil:ppc64el (10.2.0-1) ... 615s Selecting previously unselected package python3-cairo. 615s Preparing to unpack .../41-python3-cairo_1.25.1-2_ppc64el.deb ... 615s Unpacking python3-cairo (1.25.1-2) ... 615s Selecting previously unselected package python3-freetype. 615s Preparing to unpack .../42-python3-freetype_2.4.0-1_all.deb ... 615s Unpacking python3-freetype (2.4.0-1) ... 615s Selecting previously unselected package python3-rlpycairo. 615s Preparing to unpack .../43-python3-rlpycairo_0.3.0-3_all.deb ... 615s Unpacking python3-rlpycairo (0.3.0-3) ... 615s Selecting previously unselected package python3-reportlab. 615s Preparing to unpack .../44-python3-reportlab_4.1.0-1_all.deb ... 615s Unpacking python3-reportlab (4.1.0-1) ... 615s Selecting previously unselected package xml-core. 615s Preparing to unpack .../45-xml-core_0.19_all.deb ... 615s Unpacking xml-core (0.19) ... 615s Selecting previously unselected package w3c-sgml-lib. 615s Preparing to unpack .../46-w3c-sgml-lib_1.3-3_all.deb ... 615s Unpacking w3c-sgml-lib (1.3-3) ... 615s Selecting previously unselected package python3-biopython. 615s Preparing to unpack .../47-python3-biopython_1.81+dfsg-3_ppc64el.deb ... 615s Unpacking python3-biopython (1.81+dfsg-3) ... 615s Selecting previously unselected package python3-dateutil. 615s Preparing to unpack .../48-python3-dateutil_2.8.2-3_all.deb ... 615s Unpacking python3-dateutil (2.8.2-3) ... 615s Selecting previously unselected package python3-pysam. 615s Preparing to unpack .../49-python3-pysam_0.22.0+ds-1_ppc64el.deb ... 615s Unpacking python3-pysam (0.22.0+ds-1) ... 616s Selecting previously unselected package python3-pybedtools. 616s Preparing to unpack .../50-python3-pybedtools_0.9.1-1_ppc64el.deb ... 616s Unpacking python3-pybedtools (0.9.1-1) ... 616s Selecting previously unselected package python3-pandas-lib:ppc64el. 616s Preparing to unpack .../51-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_ppc64el.deb ... 616s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 616s Selecting previously unselected package python3-pandas. 616s Preparing to unpack .../52-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 616s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 616s Selecting previously unselected package python3-mirtop. 616s Preparing to unpack .../53-python3-mirtop_0.4.25-5_all.deb ... 616s Unpacking python3-mirtop (0.4.25-5) ... 616s Selecting previously unselected package autopkgtest-satdep. 616s Preparing to unpack .../54-2-autopkgtest-satdep.deb ... 616s Unpacking autopkgtest-satdep (0) ... 616s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 616s Setting up libgraphite2-3:ppc64el (1.3.14-2) ... 616s Setting up liblcms2-2:ppc64el (2.14-2) ... 616s Setting up libpixman-1-0:ppc64el (0.42.2-1) ... 616s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ... 616s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 616s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ... 616s Setting up libxcb-render0:ppc64el (1.15-1) ... 616s Setting up x11-common (1:7.7+23ubuntu2) ... 617s Setting up libdeflate0:ppc64el (1.19-1) ... 617s Setting up python3-all (3.12.1-0ubuntu2) ... 617s Setting up libxcb-shm0:ppc64el (1.15-1) ... 617s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ... 617s Setting up python3-freetype (2.4.0-1) ... 617s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ... 617s Setting up libfontenc1:ppc64el (1:1.1.8-1) ... 617s Setting up libblas3:ppc64el (3.12.0-3) ... 617s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 617s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 617s Setting up libimagequant0:ppc64el (2.18.0-1) ... 617s Setting up fonts-dejavu-mono (2.37-8) ... 617s Setting up fonts-dejavu-core (2.37-8) ... 617s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 617s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 617s Setting up libwebp7:ppc64el (1.3.2-0.4) ... 617s Setting up fonts-dejavu-extra (2.37-8) ... 617s Setting up libopenjp2-7:ppc64el (2.5.0-2) ... 617s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ... 617s Setting up python3-dateutil (2.8.2-3) ... 617s Setting up sgml-base (1.31) ... 617s Setting up libwebpmux3:ppc64el (1.3.2-0.4) ... 617s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 617s Setting up liblapack3:ppc64el (3.12.0-3) ... 617s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 617s Setting up libhts3:ppc64el (1.18+ds-1) ... 617s Setting up python3-pysam (0.22.0+ds-1) ... 618s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 618s Setting up libwebpdemux2:ppc64el (1.3.2-0.4) ... 618s Setting up xfonts-utils (1:7.7+6build2) ... 618s Setting up libraqm0:ppc64el (0.10.1-1) ... 618s Setting up python3-numpy (1:1.24.2-2) ... 620s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 620s Setting up xml-core (0.19) ... 620s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 620s Setting up python3-pybedtools (0.9.1-1) ... 620s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 620s Setting up fonts-urw-base35 (20200910-8) ... 620s Setting up libcairo2:ppc64el (1.18.0-1) ... 620s Setting up python3-pil:ppc64el (10.2.0-1) ... 621s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 626s Setting up python3-cairo (1.25.1-2) ... 626s Setting up python3-rlpycairo (0.3.0-3) ... 626s Setting up python3-reportlab (4.1.0-1) ... 627s Processing triggers for libc-bin (2.39-0ubuntu6) ... 627s Processing triggers for man-db (2.12.0-3) ... 628s Processing triggers for sgml-base (1.31) ... 628s Setting up w3c-sgml-lib (1.3-3) ... 659s Setting up python3-biopython (1.81+dfsg-3) ... 660s Setting up python3-mirtop (0.4.25-5) ... 660s /usr/lib/python3/dist-packages/mirtop/sql/sql.py:478: SyntaxWarning: invalid escape sequence '\(' 660s print("Usage: mirtop sql --create --gff --db \(Default: mirtop.db\)") 660s Setting up autopkgtest-satdep (0) ... 663s (Reading database ... 75349 files and directories currently installed.) 663s Removing autopkgtest-satdep (0) ... 665s autopkgtest [15:58:32]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import mirtop; print(mirtop)" ; done 665s autopkgtest [15:58:32]: test autodep8-python3: [----------------------- 665s Testing with python3.12: 665s 665s autopkgtest [15:58:32]: test autodep8-python3: -----------------------] 666s autopkgtest [15:58:33]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 666s autodep8-python3 PASS (superficial) 670s autopkgtest [15:58:37]: @@@@@@@@@@@@@@@@@@@@ summary 670s run-unit-test PASS 670s autodep8-python3 PASS (superficial) 695s Creating nova instance adt-noble-ppc64el-mirtop-20240323-154727-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)... 695s Creating nova instance adt-noble-ppc64el-mirtop-20240323-154727-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...