0s autopkgtest [15:20:19]: starting date and time: 2024-03-23 15:20:19+0000 0s autopkgtest [15:20:19]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:20:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.l93vtmzu/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python-pysam,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python-pysam/0.22.0+ds-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-14.secgroup --name adt-noble-ppc64el-mcaller-20240323-152019-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 184s autopkgtest [15:23:23]: testbed dpkg architecture: ppc64el 184s autopkgtest [15:23:23]: testbed apt version: 2.7.12 184s autopkgtest [15:23:23]: @@@@@@@@@@@@@@@@@@@@ test bed setup 185s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 185s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 185s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 185s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 185s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 185s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 185s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 185s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 185s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 185s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 186s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 186s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 186s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 189s Fetched 9623 kB in 2s (3958 kB/s) 190s Reading package lists... 192s Reading package lists... 193s Building dependency tree... 193s Reading state information... 193s Calculating upgrade... 193s The following packages will be REMOVED: 193s libssl3 193s The following NEW packages will be installed: 193s libssl3t64 193s The following packages have been kept back: 193s curl 193s The following packages will be upgraded: 193s openssl 193s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 193s Need to get 3151 kB of archives. 193s After this operation, 73.7 kB of additional disk space will be used. 193s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 194s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 194s Fetched 3151 kB in 1s (4478 kB/s) 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 194s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 194s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 194s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 194s wget depends on libssl3 (>= 3.0.0). 194s tnftp depends on libssl3 (>= 3.0.0). 194s tcpdump depends on libssl3 (>= 3.0.0). 194s systemd-resolved depends on libssl3 (>= 3.0.0). 194s systemd depends on libssl3 (>= 3.0.0). 194s sudo depends on libssl3 (>= 3.0.0). 194s rsync depends on libssl3 (>= 3.0.0). 194s python3-cryptography depends on libssl3 (>= 3.0.0). 194s openssh-server depends on libssl3 (>= 3.0.10). 194s openssh-client depends on libssl3 (>= 3.0.10). 194s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 194s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 194s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 194s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 194s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 194s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 194s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 194s libnvme1 depends on libssl3 (>= 3.0.0). 194s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 194s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 194s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 194s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 194s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 194s kmod depends on libssl3 (>= 3.0.0). 194s dhcpcd-base depends on libssl3 (>= 3.0.0). 194s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 194s 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 194s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 194s Selecting previously unselected package libssl3t64:ppc64el. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 194s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 194s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 194s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 194s Setting up openssl (3.0.13-0ubuntu2) ... 194s Processing triggers for man-db (2.12.0-3) ... 195s Processing triggers for libc-bin (2.39-0ubuntu6) ... 195s Reading package lists... 195s Building dependency tree... 195s Reading state information... 196s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 196s sh: Attempting to set up Debian/Ubuntu apt sources automatically 196s sh: Distribution appears to be Ubuntu 197s Reading package lists... 197s Building dependency tree... 197s Reading state information... 197s eatmydata is already the newest version (131-1). 197s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 197s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s dbus is already the newest version (1.14.10-4ubuntu1). 198s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s rng-tools-debian is already the newest version (2.4). 198s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 199s The following packages will be REMOVED: 199s cloud-init* python3-configobj* python3-debconf* 199s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 199s After this operation, 3256 kB disk space will be freed. 199s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 199s Removing cloud-init (24.1.2-0ubuntu1) ... 199s Removing python3-configobj (5.0.8-3) ... 199s Removing python3-debconf (1.5.86) ... 200s Processing triggers for man-db (2.12.0-3) ... 200s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 200s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 201s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 201s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 201s invoke-rc.d: policy-rc.d denied execution of try-restart. 201s Reading package lists... 201s Building dependency tree... 201s Reading state information... 201s linux-generic is already the newest version (6.8.0-11.11+1). 201s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 201s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 201s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 202s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 204s Reading package lists... 204s Reading package lists... 204s Building dependency tree... 204s Reading state information... 205s Calculating upgrade... 205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s Reading package lists... 205s Building dependency tree... 205s Reading state information... 205s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 205s autopkgtest [15:23:44]: rebooting testbed after setup commands that affected boot 368s autopkgtest [15:26:27]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 370s autopkgtest [15:26:29]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller 372s Get:1 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B] 372s Get:2 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB] 372s Get:3 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B] 372s gpgv: Signature made Wed Apr 27 22:26:52 2022 UTC 372s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 372s gpgv: issuer "emollier@debian.org" 372s gpgv: Can't check signature: No public key 372s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found 373s autopkgtest [15:26:32]: testing package mcaller version 1.0.3+git20210624.b415090-3 373s autopkgtest [15:26:32]: build not needed 374s autopkgtest [15:26:33]: test run-unit-test: preparing testbed 377s Reading package lists... 377s Building dependency tree... 377s Reading state information... 378s Starting pkgProblemResolver with broken count: 0 378s Starting 2 pkgProblemResolver with broken count: 0 378s Done 378s The following additional packages will be installed: 378s blt fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 378s fonts-lyx fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0 378s libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 378s libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhts3 libhtscodecs2 378s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 378s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpixman-1-0 378s libqhull-r8.0 libraqm0 libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6 378s libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 378s libxrender1 libxslt1.1 libxss1 mcaller python-matplotlib-data 378s python3-appdirs python3-biopython python3-brotli python3-cairo 378s python3-contourpy python3-cycler python3-dateutil python3-decorator 378s python3-fonttools python3-freetype python3-fs python3-h5py 378s python3-h5py-serial python3-joblib python3-kiwisolver python3-lxml 378s python3-lz4 python3-matplotlib python3-mpmath python3-numpy 378s python3-packaging python3-pandas python3-pandas-lib python3-pil 378s python3-pil.imagetk python3-pysam python3-reportlab python3-rlpycairo 378s python3-scipy python3-seaborn python3-sklearn python3-sklearn-lib 378s python3-sympy python3-threadpoolctl python3-tk python3-ufolib2 378s python3-unicodedata2 sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib 378s x11-common xfonts-encodings xfonts-utils xml-core 378s Suggested packages: 378s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 378s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 graphmap bwa clustalo 378s clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank 378s probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml 378s samtools t-coffee wise python-cycler-doc python-h5py-doc python-lxml-doc 378s cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 378s inkscape ipython3 librsvg2-common python3-cairocffi python3-gi-cairo 378s python3-gobject python3-pyqt5 python3-sip python3-tornado 378s texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc 378s gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels 378s python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc 378s rl-accel rl-renderpm python-scipy-doc python3-dap python-sklearn-doc 378s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg sgml-base-doc 378s debhelper 378s Recommended packages: 378s javascript-common nanopolish | poretools python-biopython-doc ncbi-blast+ 378s python3-pytest python3-simplejson python3-psutil python3-bs4 378s python3-cssselect python3-html5lib python3-bottleneck python3-numexpr 378s python3-odf python3-openpyxl python3-tables python3-olefile g++ 378s | c++-compiler python3-patsy isympy-common 378s The following NEW packages will be installed: 378s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core 378s fonts-dejavu-extra fonts-dejavu-mono fonts-lyx fonts-urw-base35 libaec0 378s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 378s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-hl-100 libhts3 378s libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery 378s libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 378s libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 libsharpyuv0 libsz2 378s libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 378s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 mcaller 378s python-matplotlib-data python3-appdirs python3-biopython python3-brotli 378s python3-cairo python3-contourpy python3-cycler python3-dateutil 378s python3-decorator python3-fonttools python3-freetype python3-fs python3-h5py 378s python3-h5py-serial python3-joblib python3-kiwisolver python3-lxml 378s python3-lz4 python3-matplotlib python3-mpmath python3-numpy 378s python3-packaging python3-pandas python3-pandas-lib python3-pil 378s python3-pil.imagetk python3-pysam python3-reportlab python3-rlpycairo 378s python3-scipy python3-seaborn python3-sklearn python3-sklearn-lib 378s python3-sympy python3-threadpoolctl python3-tk python3-ufolib2 378s python3-unicodedata2 sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib 378s x11-common xfonts-encodings xfonts-utils xml-core 378s 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. 378s Need to get 117 MB/117 MB of archives. 378s After this operation, 592 MB of additional disk space will be used. 378s Get:1 /tmp/autopkgtest.bQE38b/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [704 B] 378s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el sgml-base all 1.31 [11.4 kB] 378s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB] 378s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 379s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 379s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontenc1 ppc64el 1:1.1.8-1 [15.7 kB] 379s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 379s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 379s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-utils ppc64el 1:7.7+6build2 [112 kB] 379s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB] 379s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 379s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 379s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 379s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB] 379s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B] 379s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.14-1 [944 kB] 379s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7 [778 kB] 379s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el blt ppc64el 2.5.3+dfsg-7 [4832 B] 379s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-extra all 2.37-8 [1947 kB] 379s Get:20 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-lyx all 2.4.0~RC3-1 [170 kB] 379s Get:21 http://ftpmaster.internal/ubuntu noble/universe ppc64el libaec0 ppc64el 1.1.2-1 [29.9 kB] 379s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 379s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB] 379s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] 379s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] 379s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB] 379s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 379s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 379s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB] 379s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 379s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 379s Get:32 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsz2 ppc64el 1.1.2-1 [5472 B] 379s Get:33 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhdf5-103-1 ppc64el 1.10.10+repack-3ubuntu1 [1375 kB] 379s Get:34 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhdf5-hl-100 ppc64el 1.10.10+repack-3ubuntu1 [69.9 kB] 379s Get:35 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 379s Get:36 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 379s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB] 379s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 379s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 379s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 379s Get:41 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 379s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 379s Get:43 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1 [32.8 kB] 379s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] 379s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 379s Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B] 379s Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6 [220 kB] 379s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB] 379s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 379s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 380s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 380s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 380s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB] 380s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB] 380s Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libxslt1.1 ppc64el 1.1.39-0exp1 [192 kB] 380s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-joblib all 1.3.2-1 [207 kB] 380s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 380s Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB] 380s Get:59 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-scipy ppc64el 1.11.4-6 [21.4 MB] 380s Get:60 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-threadpoolctl all 3.1.0-1 [21.3 kB] 380s Get:61 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-sklearn-lib ppc64el 1.4.1.post1+dfsg-1 [6817 kB] 380s Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-sklearn all 1.4.1.post1+dfsg-1 [2261 kB] 380s Get:63 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-h5py-serial ppc64el 3.10.0-1ubuntu1 [1635 kB] 380s Get:64 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-h5py all 3.10.0-1ubuntu1 [7970 B] 380s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-tk ppc64el 3.11.5-1 [116 kB] 380s Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pil.imagetk ppc64el 10.2.0-1 [10.1 kB] 380s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB] 380s Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB] 380s Get:69 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-cairo ppc64el 1.25.1-2 [162 kB] 380s Get:70 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-freetype all 2.4.0-1 [83.1 kB] 380s Get:71 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B] 380s Get:72 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-reportlab all 4.1.0-1 [683 kB] 381s Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el xml-core all 0.19 [20.3 kB] 381s Get:74 http://ftpmaster.internal/ubuntu noble/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB] 381s Get:75 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biopython ppc64el 1.81+dfsg-3 [1738 kB] 381s Get:76 http://ftpmaster.internal/ubuntu noble/universe ppc64el python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 381s Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB] 381s Get:78 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-contourpy ppc64el 1.0.7-1build2 [300 kB] 381s Get:79 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cycler all 0.11.0-2 [8202 B] 381s Get:80 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-brotli ppc64el 1.1.0-2 [420 kB] 381s Get:81 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 381s Get:82 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mpmath all 1.2.1-3 [421 kB] 381s Get:83 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-sympy all 1.12-7 [3966 kB] 381s Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB] 381s Get:85 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fs all 2.4.16-3 [91.1 kB] 381s Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-lxml ppc64el 5.1.0-1 [2191 kB] 381s Get:87 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build2 [28.8 kB] 381s Get:88 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1 [368 kB] 381s Get:89 http://ftpmaster.internal/ubuntu noble/universe ppc64el unicode-data all 15.1.0-1 [8878 kB] 381s Get:90 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fonttools ppc64el 4.46.0-1 [1746 kB] 381s Get:91 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-kiwisolver ppc64el 1.4.4-2 [55.8 kB] 381s Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 23.2-1 [40.6 kB] 381s Get:93 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-matplotlib ppc64el 3.6.3-1ubuntu3 [7651 kB] 381s Get:94 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB] 381s Get:95 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 382s Get:96 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-seaborn all 0.13.2-2 [225 kB] 382s Get:97 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pysam ppc64el 0.22.0+ds-1 [5037 kB] 382s Get:98 http://ftpmaster.internal/ubuntu noble/universe ppc64el mcaller all 1.0.3+git20210624.b415090-3 [19.3 kB] 382s Fetched 117 MB in 4s (31.3 MB/s) 382s Selecting previously unselected package sgml-base. 382s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 382s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 382s Unpacking sgml-base (1.31) ... 382s Selecting previously unselected package libtcl8.6:ppc64el. 382s Preparing to unpack .../01-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ... 382s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ... 382s Selecting previously unselected package fonts-dejavu-mono. 382s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ... 382s Unpacking fonts-dejavu-mono (2.37-8) ... 382s Selecting previously unselected package fonts-dejavu-core. 382s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ... 382s Unpacking fonts-dejavu-core (2.37-8) ... 382s Selecting previously unselected package libfontenc1:ppc64el. 382s Preparing to unpack .../04-libfontenc1_1%3a1.1.8-1_ppc64el.deb ... 382s Unpacking libfontenc1:ppc64el (1:1.1.8-1) ... 382s Selecting previously unselected package x11-common. 382s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu2_all.deb ... 382s Unpacking x11-common (1:7.7+23ubuntu2) ... 382s Selecting previously unselected package xfonts-encodings. 382s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 382s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 382s Selecting previously unselected package xfonts-utils. 382s Preparing to unpack .../07-xfonts-utils_1%3a7.7+6build2_ppc64el.deb ... 382s Unpacking xfonts-utils (1:7.7+6build2) ... 382s Selecting previously unselected package fonts-urw-base35. 382s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 383s Unpacking fonts-urw-base35 (20200910-8) ... 383s Selecting previously unselected package fontconfig-config. 383s Preparing to unpack .../09-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 383s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 383s Selecting previously unselected package libfontconfig1:ppc64el. 383s Preparing to unpack .../10-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 383s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 383s Selecting previously unselected package libxrender1:ppc64el. 383s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 383s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 383s Selecting previously unselected package libxft2:ppc64el. 383s Preparing to unpack .../12-libxft2_2.3.6-1_ppc64el.deb ... 383s Unpacking libxft2:ppc64el (2.3.6-1) ... 383s Selecting previously unselected package libxss1:ppc64el. 383s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build2_ppc64el.deb ... 383s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ... 383s Selecting previously unselected package libtk8.6:ppc64el. 383s Preparing to unpack .../14-libtk8.6_8.6.14-1_ppc64el.deb ... 383s Unpacking libtk8.6:ppc64el (8.6.14-1) ... 383s Selecting previously unselected package tk8.6-blt2.5. 383s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-7_ppc64el.deb ... 383s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 383s Selecting previously unselected package blt. 383s Preparing to unpack .../16-blt_2.5.3+dfsg-7_ppc64el.deb ... 383s Unpacking blt (2.5.3+dfsg-7) ... 383s Selecting previously unselected package fonts-dejavu-extra. 383s Preparing to unpack .../17-fonts-dejavu-extra_2.37-8_all.deb ... 383s Unpacking fonts-dejavu-extra (2.37-8) ... 383s Selecting previously unselected package fonts-lyx. 383s Preparing to unpack .../18-fonts-lyx_2.4.0~RC3-1_all.deb ... 383s Unpacking fonts-lyx (2.4.0~RC3-1) ... 383s Selecting previously unselected package libaec0:ppc64el. 383s Preparing to unpack .../19-libaec0_1.1.2-1_ppc64el.deb ... 383s Unpacking libaec0:ppc64el (1.1.2-1) ... 383s Selecting previously unselected package libblas3:ppc64el. 383s Preparing to unpack .../20-libblas3_3.12.0-3_ppc64el.deb ... 383s Unpacking libblas3:ppc64el (3.12.0-3) ... 383s Selecting previously unselected package libpixman-1-0:ppc64el. 383s Preparing to unpack .../21-libpixman-1-0_0.42.2-1_ppc64el.deb ... 383s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ... 383s Selecting previously unselected package libxcb-render0:ppc64el. 383s Preparing to unpack .../22-libxcb-render0_1.15-1_ppc64el.deb ... 383s Unpacking libxcb-render0:ppc64el (1.15-1) ... 383s Selecting previously unselected package libxcb-shm0:ppc64el. 383s Preparing to unpack .../23-libxcb-shm0_1.15-1_ppc64el.deb ... 383s Unpacking libxcb-shm0:ppc64el (1.15-1) ... 383s Selecting previously unselected package libcairo2:ppc64el. 383s Preparing to unpack .../24-libcairo2_1.18.0-1_ppc64el.deb ... 383s Unpacking libcairo2:ppc64el (1.18.0-1) ... 383s Selecting previously unselected package libdeflate0:ppc64el. 383s Preparing to unpack .../25-libdeflate0_1.19-1_ppc64el.deb ... 383s Unpacking libdeflate0:ppc64el (1.19-1) ... 383s Selecting previously unselected package libgfortran5:ppc64el. 383s Preparing to unpack .../26-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 383s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 383s Selecting previously unselected package libgomp1:ppc64el. 383s Preparing to unpack .../27-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ... 383s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ... 383s Selecting previously unselected package libgraphite2-3:ppc64el. 383s Preparing to unpack .../28-libgraphite2-3_1.3.14-2_ppc64el.deb ... 383s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 383s Selecting previously unselected package libharfbuzz0b:ppc64el. 383s Preparing to unpack .../29-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 383s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 383s Selecting previously unselected package libsz2:ppc64el. 383s Preparing to unpack .../30-libsz2_1.1.2-1_ppc64el.deb ... 383s Unpacking libsz2:ppc64el (1.1.2-1) ... 383s Selecting previously unselected package libhdf5-103-1:ppc64el. 383s Preparing to unpack .../31-libhdf5-103-1_1.10.10+repack-3ubuntu1_ppc64el.deb ... 383s Unpacking libhdf5-103-1:ppc64el (1.10.10+repack-3ubuntu1) ... 383s Selecting previously unselected package libhdf5-hl-100:ppc64el. 383s Preparing to unpack .../32-libhdf5-hl-100_1.10.10+repack-3ubuntu1_ppc64el.deb ... 383s Unpacking libhdf5-hl-100:ppc64el (1.10.10+repack-3ubuntu1) ... 383s Selecting previously unselected package libhtscodecs2:ppc64el. 383s Preparing to unpack .../33-libhtscodecs2_1.6.0-1_ppc64el.deb ... 383s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 383s Selecting previously unselected package libhts3:ppc64el. 383s Preparing to unpack .../34-libhts3_1.18+ds-1_ppc64el.deb ... 383s Unpacking libhts3:ppc64el (1.18+ds-1) ... 383s Selecting previously unselected package libimagequant0:ppc64el. 383s Preparing to unpack .../35-libimagequant0_2.18.0-1_ppc64el.deb ... 383s Unpacking libimagequant0:ppc64el (2.18.0-1) ... 383s Selecting previously unselected package libjpeg-turbo8:ppc64el. 383s Preparing to unpack .../36-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 383s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 383s Selecting previously unselected package libjpeg8:ppc64el. 383s Preparing to unpack .../37-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 383s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 383s Selecting previously unselected package libjs-jquery. 384s Preparing to unpack .../38-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 384s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 384s Selecting previously unselected package libjs-jquery-ui. 384s Preparing to unpack .../39-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 384s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 384s Selecting previously unselected package liblapack3:ppc64el. 384s Preparing to unpack .../40-liblapack3_3.12.0-3_ppc64el.deb ... 384s Unpacking liblapack3:ppc64el (3.12.0-3) ... 384s Selecting previously unselected package liblbfgsb0:ppc64el. 384s Preparing to unpack .../41-liblbfgsb0_3.0+dfsg.4-1_ppc64el.deb ... 384s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 384s Selecting previously unselected package liblcms2-2:ppc64el. 384s Preparing to unpack .../42-liblcms2-2_2.14-2_ppc64el.deb ... 384s Unpacking liblcms2-2:ppc64el (2.14-2) ... 384s Selecting previously unselected package liblerc4:ppc64el. 384s Preparing to unpack .../43-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 384s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 384s Selecting previously unselected package liblzf1:ppc64el. 384s Preparing to unpack .../44-liblzf1_3.6-4_ppc64el.deb ... 384s Unpacking liblzf1:ppc64el (3.6-4) ... 384s Selecting previously unselected package libqhull-r8.0:ppc64el. 384s Preparing to unpack .../45-libqhull-r8.0_2020.2-6_ppc64el.deb ... 384s Unpacking libqhull-r8.0:ppc64el (2020.2-6) ... 384s Selecting previously unselected package libraqm0:ppc64el. 384s Preparing to unpack .../46-libraqm0_0.10.1-1_ppc64el.deb ... 384s Unpacking libraqm0:ppc64el (0.10.1-1) ... 384s Selecting previously unselected package libsharpyuv0:ppc64el. 384s Preparing to unpack .../47-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 384s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 384s Selecting previously unselected package libjbig0:ppc64el. 384s Preparing to unpack .../48-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 384s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 384s Selecting previously unselected package libwebp7:ppc64el. 384s Preparing to unpack .../49-libwebp7_1.3.2-0.4_ppc64el.deb ... 384s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 384s Selecting previously unselected package libtiff6:ppc64el. 384s Preparing to unpack .../50-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 384s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 384s Selecting previously unselected package libwebpdemux2:ppc64el. 384s Preparing to unpack .../51-libwebpdemux2_1.3.2-0.4_ppc64el.deb ... 384s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ... 384s Selecting previously unselected package libwebpmux3:ppc64el. 384s Preparing to unpack .../52-libwebpmux3_1.3.2-0.4_ppc64el.deb ... 384s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ... 384s Selecting previously unselected package libxslt1.1:ppc64el. 384s Preparing to unpack .../53-libxslt1.1_1.1.39-0exp1_ppc64el.deb ... 384s Unpacking libxslt1.1:ppc64el (1.1.39-0exp1) ... 384s Selecting previously unselected package python3-joblib. 384s Preparing to unpack .../54-python3-joblib_1.3.2-1_all.deb ... 384s Unpacking python3-joblib (1.3.2-1) ... 384s Selecting previously unselected package python3-numpy. 384s Preparing to unpack .../55-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 384s Unpacking python3-numpy (1:1.24.2-2) ... 384s Selecting previously unselected package python3-decorator. 384s Preparing to unpack .../56-python3-decorator_5.1.1-5_all.deb ... 384s Unpacking python3-decorator (5.1.1-5) ... 384s Selecting previously unselected package python3-scipy. 384s Preparing to unpack .../57-python3-scipy_1.11.4-6_ppc64el.deb ... 384s Unpacking python3-scipy (1.11.4-6) ... 385s Selecting previously unselected package python3-threadpoolctl. 385s Preparing to unpack .../58-python3-threadpoolctl_3.1.0-1_all.deb ... 385s Unpacking python3-threadpoolctl (3.1.0-1) ... 385s Selecting previously unselected package python3-sklearn-lib:ppc64el. 385s Preparing to unpack .../59-python3-sklearn-lib_1.4.1.post1+dfsg-1_ppc64el.deb ... 385s Unpacking python3-sklearn-lib:ppc64el (1.4.1.post1+dfsg-1) ... 386s Selecting previously unselected package python3-sklearn. 386s Preparing to unpack .../60-python3-sklearn_1.4.1.post1+dfsg-1_all.deb ... 386s Unpacking python3-sklearn (1.4.1.post1+dfsg-1) ... 386s Selecting previously unselected package python3-h5py-serial. 386s Preparing to unpack .../61-python3-h5py-serial_3.10.0-1ubuntu1_ppc64el.deb ... 386s Unpacking python3-h5py-serial (3.10.0-1ubuntu1) ... 386s Selecting previously unselected package python3-h5py. 386s Preparing to unpack .../62-python3-h5py_3.10.0-1ubuntu1_all.deb ... 386s Unpacking python3-h5py (3.10.0-1ubuntu1) ... 386s Selecting previously unselected package python3-tk:ppc64el. 386s Preparing to unpack .../63-python3-tk_3.11.5-1_ppc64el.deb ... 386s Unpacking python3-tk:ppc64el (3.11.5-1) ... 386s Selecting previously unselected package python3-pil.imagetk:ppc64el. 386s Preparing to unpack .../64-python3-pil.imagetk_10.2.0-1_ppc64el.deb ... 386s Unpacking python3-pil.imagetk:ppc64el (10.2.0-1) ... 386s Selecting previously unselected package libopenjp2-7:ppc64el. 386s Preparing to unpack .../65-libopenjp2-7_2.5.0-2_ppc64el.deb ... 386s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ... 386s Selecting previously unselected package python3-pil:ppc64el. 386s Preparing to unpack .../66-python3-pil_10.2.0-1_ppc64el.deb ... 386s Unpacking python3-pil:ppc64el (10.2.0-1) ... 386s Selecting previously unselected package python3-cairo. 386s Preparing to unpack .../67-python3-cairo_1.25.1-2_ppc64el.deb ... 386s Unpacking python3-cairo (1.25.1-2) ... 386s Selecting previously unselected package python3-freetype. 386s Preparing to unpack .../68-python3-freetype_2.4.0-1_all.deb ... 386s Unpacking python3-freetype (2.4.0-1) ... 386s Selecting previously unselected package python3-rlpycairo. 386s Preparing to unpack .../69-python3-rlpycairo_0.3.0-3_all.deb ... 386s Unpacking python3-rlpycairo (0.3.0-3) ... 386s Selecting previously unselected package python3-reportlab. 386s Preparing to unpack .../70-python3-reportlab_4.1.0-1_all.deb ... 386s Unpacking python3-reportlab (4.1.0-1) ... 386s Selecting previously unselected package xml-core. 386s Preparing to unpack .../71-xml-core_0.19_all.deb ... 386s Unpacking xml-core (0.19) ... 386s Selecting previously unselected package w3c-sgml-lib. 386s Preparing to unpack .../72-w3c-sgml-lib_1.3-3_all.deb ... 386s Unpacking w3c-sgml-lib (1.3-3) ... 386s Selecting previously unselected package python3-biopython. 386s Preparing to unpack .../73-python3-biopython_1.81+dfsg-3_ppc64el.deb ... 386s Unpacking python3-biopython (1.81+dfsg-3) ... 387s Selecting previously unselected package python-matplotlib-data. 387s Preparing to unpack .../74-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 387s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 387s Selecting previously unselected package python3-dateutil. 387s Preparing to unpack .../75-python3-dateutil_2.8.2-3_all.deb ... 387s Unpacking python3-dateutil (2.8.2-3) ... 387s Selecting previously unselected package python3-contourpy. 387s Preparing to unpack .../76-python3-contourpy_1.0.7-1build2_ppc64el.deb ... 387s Unpacking python3-contourpy (1.0.7-1build2) ... 387s Selecting previously unselected package python3-cycler. 387s Preparing to unpack .../77-python3-cycler_0.11.0-2_all.deb ... 387s Unpacking python3-cycler (0.11.0-2) ... 387s Selecting previously unselected package python3-brotli. 387s Preparing to unpack .../78-python3-brotli_1.1.0-2_ppc64el.deb ... 387s Unpacking python3-brotli (1.1.0-2) ... 387s Selecting previously unselected package python3-ufolib2. 387s Preparing to unpack .../79-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 387s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 387s Selecting previously unselected package python3-mpmath. 387s Preparing to unpack .../80-python3-mpmath_1.2.1-3_all.deb ... 387s Unpacking python3-mpmath (1.2.1-3) ... 387s Selecting previously unselected package python3-sympy. 387s Preparing to unpack .../81-python3-sympy_1.12-7_all.deb ... 387s Unpacking python3-sympy (1.12-7) ... 387s Selecting previously unselected package python3-appdirs. 387s Preparing to unpack .../82-python3-appdirs_1.4.4-4_all.deb ... 387s Unpacking python3-appdirs (1.4.4-4) ... 387s Selecting previously unselected package python3-fs. 387s Preparing to unpack .../83-python3-fs_2.4.16-3_all.deb ... 387s Unpacking python3-fs (2.4.16-3) ... 387s Selecting previously unselected package python3-lxml:ppc64el. 387s Preparing to unpack .../84-python3-lxml_5.1.0-1_ppc64el.deb ... 387s Unpacking python3-lxml:ppc64el (5.1.0-1) ... 387s Selecting previously unselected package python3-lz4. 387s Preparing to unpack .../85-python3-lz4_4.0.2+dfsg-1build2_ppc64el.deb ... 387s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 387s Selecting previously unselected package python3-unicodedata2. 387s Preparing to unpack .../86-python3-unicodedata2_15.1.0+ds-1_ppc64el.deb ... 387s Unpacking python3-unicodedata2 (15.1.0+ds-1) ... 387s Selecting previously unselected package unicode-data. 387s Preparing to unpack .../87-unicode-data_15.1.0-1_all.deb ... 387s Unpacking unicode-data (15.1.0-1) ... 388s Selecting previously unselected package python3-fonttools. 388s Preparing to unpack .../88-python3-fonttools_4.46.0-1_ppc64el.deb ... 388s Unpacking python3-fonttools (4.46.0-1) ... 388s Selecting previously unselected package python3-kiwisolver. 388s Preparing to unpack .../89-python3-kiwisolver_1.4.4-2_ppc64el.deb ... 388s Unpacking python3-kiwisolver (1.4.4-2) ... 388s Selecting previously unselected package python3-packaging. 388s Preparing to unpack .../90-python3-packaging_23.2-1_all.deb ... 388s Unpacking python3-packaging (23.2-1) ... 388s Selecting previously unselected package python3-matplotlib. 388s Preparing to unpack .../91-python3-matplotlib_3.6.3-1ubuntu3_ppc64el.deb ... 388s Unpacking python3-matplotlib (3.6.3-1ubuntu3) ... 388s Selecting previously unselected package python3-pandas-lib:ppc64el. 388s Preparing to unpack .../92-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_ppc64el.deb ... 388s Unpacking python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 389s Selecting previously unselected package python3-pandas. 389s Preparing to unpack .../93-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ... 389s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ... 389s Selecting previously unselected package python3-seaborn. 389s Preparing to unpack .../94-python3-seaborn_0.13.2-2_all.deb ... 389s Unpacking python3-seaborn (0.13.2-2) ... 389s Selecting previously unselected package python3-pysam. 389s Preparing to unpack .../95-python3-pysam_0.22.0+ds-1_ppc64el.deb ... 389s Unpacking python3-pysam (0.22.0+ds-1) ... 389s Selecting previously unselected package mcaller. 389s Preparing to unpack .../96-mcaller_1.0.3+git20210624.b415090-3_all.deb ... 389s Unpacking mcaller (1.0.3+git20210624.b415090-3) ... 389s Selecting previously unselected package autopkgtest-satdep. 389s Preparing to unpack .../97-1-autopkgtest-satdep.deb ... 389s Unpacking autopkgtest-satdep (0) ... 389s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 389s Setting up libgraphite2-3:ppc64el (1.3.14-2) ... 389s Setting up liblcms2-2:ppc64el (2.14-2) ... 389s Setting up libpixman-1-0:ppc64el (0.42.2-1) ... 389s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ... 389s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 389s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ... 389s Setting up python3-joblib (1.3.2-1) ... 390s Setting up python3-lz4 (4.0.2+dfsg-1build2) ... 390s Setting up libxcb-render0:ppc64el (1.15-1) ... 390s Setting up python3-unicodedata2 (15.1.0+ds-1) ... 390s Setting up fonts-lyx (2.4.0~RC3-1) ... 390s Setting up python3-threadpoolctl (3.1.0-1) ... 390s Setting up x11-common (1:7.7+23ubuntu2) ... 391s Setting up libdeflate0:ppc64el (1.19-1) ... 391s Setting up libqhull-r8.0:ppc64el (2020.2-6) ... 391s Setting up libxcb-shm0:ppc64el (1.15-1) ... 391s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ... 391s Setting up python3-freetype (2.4.0-1) ... 391s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ... 391s Setting up libaec0:ppc64el (1.1.2-1) ... 391s Setting up unicode-data (15.1.0-1) ... 391s Setting up python3-decorator (5.1.1-5) ... 391s Setting up libfontenc1:ppc64el (1:1.1.8-1) ... 391s Setting up libblas3:ppc64el (3.12.0-3) ... 391s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 391s Setting up python3-packaging (23.2-1) ... 391s Setting up python3-brotli (1.1.0-2) ... 391s Setting up liblzf1:ppc64el (3.6-4) ... 391s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 391s Setting up python3-cycler (0.11.0-2) ... 391s Setting up libimagequant0:ppc64el (2.18.0-1) ... 391s Setting up fonts-dejavu-mono (2.37-8) ... 391s Setting up python3-kiwisolver (1.4.4-2) ... 391s Setting up libtcl8.6:ppc64el (8.6.13+dfsg-2) ... 391s Setting up fonts-dejavu-core (2.37-8) ... 391s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 391s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 391s Setting up libwebp7:ppc64el (1.3.2-0.4) ... 391s Setting up fonts-dejavu-extra (2.37-8) ... 391s Setting up libxslt1.1:ppc64el (1.1.39-0exp1) ... 391s Setting up libopenjp2-7:ppc64el (2.5.0-2) ... 391s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ... 391s Setting up python3-dateutil (2.8.2-3) ... 392s Setting up sgml-base (1.31) ... 392s Setting up libxss1:ppc64el (1:1.2.3-1build2) ... 392s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 392s Setting up python3-mpmath (1.2.1-3) ... 392s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... 392s Setting up libwebpmux3:ppc64el (1.3.2-0.4) ... 392s Setting up python3-appdirs (1.4.4-4) ... 392s Setting up libsz2:ppc64el (1.1.2-1) ... 392s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 392s Setting up python3-sympy (1.12-7) ... 399s Setting up liblapack3:ppc64el (3.12.0-3) ... 399s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 399s Setting up libhts3:ppc64el (1.18+ds-1) ... 399s Setting up python3-pysam (0.22.0+ds-1) ... 399s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 399s Setting up libwebpdemux2:ppc64el (1.3.2-0.4) ... 399s Setting up xfonts-utils (1:7.7+6build2) ... 399s Setting up python3-fs (2.4.16-3) ... 399s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 399s Setting up libraqm0:ppc64el (0.10.1-1) ... 399s Setting up python3-numpy (1:1.24.2-2) ... 402s Setting up libhdf5-103-1:ppc64el (1.10.10+repack-3ubuntu1) ... 402s Setting up python3-lxml:ppc64el (5.1.0-1) ... 402s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 402s Setting up xml-core (0.19) ... 402s Setting up python3-contourpy (1.0.7-1build2) ... 402s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 402s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1) ... 402s Setting up libhdf5-hl-100:ppc64el (1.10.10+repack-3ubuntu1) ... 402s Setting up libxft2:ppc64el (2.3.6-1) ... 402s Setting up python3-scipy (1.11.4-6) ... 406s Setting up libtk8.6:ppc64el (8.6.14-1) ... 406s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ... 406s Setting up python3-sklearn-lib:ppc64el (1.4.1.post1+dfsg-1) ... 406s Setting up python3-h5py-serial (3.10.0-1ubuntu1) ... 406s Setting up fonts-urw-base35 (20200910-8) ... 406s Setting up libcairo2:ppc64el (1.18.0-1) ... 406s Setting up python3-pil:ppc64el (10.2.0-1) ... 407s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ... 412s Setting up python3-h5py (3.10.0-1ubuntu1) ... 412s Setting up python3-sklearn (1.4.1.post1+dfsg-1) ... 414s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ... 414s Setting up python3-cairo (1.25.1-2) ... 415s Setting up blt (2.5.3+dfsg-7) ... 415s Setting up python3-tk:ppc64el (3.11.5-1) ... 415s Setting up python3-pil.imagetk:ppc64el (10.2.0-1) ... 415s Setting up python3-rlpycairo (0.3.0-3) ... 415s Setting up python3-reportlab (4.1.0-1) ... 416s Setting up python3-fonttools (4.46.0-1) ... 417s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 417s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 419s Setting up python3-seaborn (0.13.2-2) ... 419s Processing triggers for man-db (2.12.0-3) ... 420s Processing triggers for libc-bin (2.39-0ubuntu6) ... 420s Processing triggers for sgml-base (1.31) ... 420s Setting up w3c-sgml-lib (1.3-3) ... 451s Setting up python3-biopython (1.81+dfsg-3) ... 453s Setting up mcaller (1.0.3+git20210624.b415090-3) ... 453s Setting up autopkgtest-satdep (0) ... 456s (Reading database ... 82027 files and directories currently installed.) 456s Removing autopkgtest-satdep (0) ... 456s autopkgtest [15:27:55]: test run-unit-test: [----------------------- 458s testdata/ 458s 1 contigs 458s 1 threads 458s thread finished processing...: 458s 35 observations 458s 35 positions 458s 0 regions with multiple methylated bases 458s 0 observations with skips included 458s 8 observations with too many skips 458s Finished extracting signals 459s testdata/ 459s 1 contigs 459s 1 threads 459s thread finished processing...: 459s 9 observations 459s 9 positions 459s 0 regions with multiple methylated bases 459s 0 observations with skips included 459s 2 observations with too many skips 459s Finished extracting signals 460s testdata/ 460s 1 contigs 460s 4 threads 460s thread finished processing...: 460s 9 observations 460s 9 positions 460s 0 regions with multiple methylated bases 460s 0 observations with skips included 460s 4 observations with too many skips 460s thread finished processing...: 460s 28 observations 460s 28 positions 460s 0 regions with multiple methylated bases 460s 0 observations with skips included 460s 6 observations with too many skips 460s Error: could not find sequence for reference contig li 460s thread finished processing...: 460s 16 observations 460s 16 positions 460s 0 regions with multiple methylated bases 460s 0 observations with skips included 460s 6 observations with too many skips 461s thread finished processing...: 461s 44 observations 461s 44 positions 461s 1 regions with multiple methylated bases 461s 0 observations with skips included 461s 10 observations with too many skips 461s Finished extracting signals 461s Merging files... 461s Training... 461s ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A'] 461s [[-0.18999999999999992, -1.6799999999999997, -2.3, 0.56, -1.41, 1.48, 7.055265349382997], [-1.1300000000000001, -1.67, -1.1, -0.5774999999999999, 0.42, 1.0225, 7.055265349382997], [0.0050000000000000044, -0.29500000000000004, -0.54, 3.96, 1.47, 0.06499999999999995, 7.055265349382997], [3.255, 3.925, 0.03999999999999998, -0.15599999999999997, -1.01, 1.3533333333333333, 7.055265349382997], [-0.07999999999999996, -1.3666666666666665, 0.84, -0.5449999999999999, -3.22, -1.53, 7.055265349382997], [-1.74, -2.56, -2.0774999999999997, 1.84, -0.09999999999999998, -0.3, 7.055265349382997], [1.92, 2.75, 1.59, 1.6433333333333333, 1.59, 1.27, 7.055265349382997], [-1.44, -5.03, 1.4449999999999998, 0.4000000000000001, -0.588, -0.55, 7.055265349382997], [-1.4433333333333334, -0.020000000000000018, -0.0366666666666667, -0.5499999999999999, 0.64, -2.71, 7.055265349382997], [-1.23, -1.635, -0.24, 1.1033333333333333, -2.215, -2.93, 7.055265349382997]] 461s ['GGATTMTTTCA', 'CTGGAMAAAGC', 'GGGCCMTTACC', 'GGTGGMTGAAT', 'GGTTAMCGCGT', 'TGTGGMGAAAC', 'AGAACMCTTTC', 'AAATGMGATTT', 'AGTAGMTTGAT', 'ACTTAMCCGGT'] 461s NN general model scores: 0.875,0.5,0.5,1.0,0.5 461s Cross validation accuracy: 0.68 (+/- 0.44) 461s Finished training 461s PASS 462s autopkgtest [15:28:01]: test run-unit-test: -----------------------] 462s autopkgtest [15:28:01]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 462s run-unit-test PASS 462s autopkgtest [15:28:01]: @@@@@@@@@@@@@@@@@@@@ summary 462s run-unit-test PASS 488s Creating nova instance adt-noble-ppc64el-mcaller-20240323-152019-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...