0s autopkgtest [19:56:39]: starting date and time: 2024-03-14 19:56:39+0000
  0s autopkgtest [19:56:39]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [19:56:39]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.gj2phvq1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:h5py,src:hdf5,src:openmpi,src:openssl,src:pmix --apt-upgrade mcaller --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=h5py/3.10.0-1ubuntu2 hdf5/1.10.10+repack-3.1ubuntu2 openmpi/4.1.6-5.1ubuntu3 openssl/3.0.13-0ubuntu1 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-2.secgroup --name adt-noble-ppc64el-mcaller-20240314-195639-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
110s autopkgtest [19:58:29]: testbed dpkg architecture: ppc64el
110s autopkgtest [19:58:29]: testbed apt version: 2.7.12
110s autopkgtest [19:58:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup
111s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [454 kB]
111s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3020 kB]
112s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B]
112s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [48.4 kB]
112s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [607 kB]
112s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
112s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
112s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
112s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3317 kB]
112s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
112s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [42.8 kB]
112s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
115s Fetched 7625 kB in 2s (3741 kB/s)
115s Reading package lists...
118s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s Calculating upgrade...
118s The following packages will be REMOVED:
118s   libssl3
118s The following NEW packages will be installed:
118s   libssl3t64
118s The following packages will be upgraded:
118s   openssl
118s 1 upgraded, 1 newly installed, 1 to remove and 0 not upgraded.
118s Need to get 3195 kB of archives.
118s After this operation, 6144 B of additional disk space will be used.
118s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu1 [1028 kB]
119s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu1 [2168 kB]
119s Fetched 3195 kB in 1s (4469 kB/s)
119s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70095 files and directories currently installed.)
119s Preparing to unpack .../openssl_3.0.13-0ubuntu1_ppc64el.deb ...
119s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
119s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested:
119s  wget depends on libssl3 (>= 3.0.0).
119s  tnftp depends on libssl3 (>= 3.0.0).
119s  tcpdump depends on libssl3 (>= 3.0.0).
119s  systemd-resolved depends on libssl3 (>= 3.0.0).
119s  systemd depends on libssl3 (>= 3.0.0).
119s  sudo depends on libssl3 (>= 3.0.0).
119s  rsync depends on libssl3 (>= 3.0.0).
119s  python3-cryptography depends on libssl3 (>= 3.0.0).
119s  openssh-server depends on libssl3 (>= 3.0.10).
119s  openssh-client depends on libssl3 (>= 3.0.10).
119s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
119s  libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0).
119s  libssh-4:ppc64el depends on libssl3 (>= 3.0.0).
119s  libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0).
119s  libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0).
119s  libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0).
119s  libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0).
119s  libnvme1 depends on libssl3 (>= 3.0.0).
119s  libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0).
119s  libkmod2:ppc64el depends on libssl3 (>= 3.0.0).
119s  libfido2-1:ppc64el depends on libssl3 (>= 3.0.0).
119s  libcurl4:ppc64el depends on libssl3 (>= 3.0.0).
119s  libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0).
119s  kmod depends on libssl3 (>= 3.0.0).
119s  dhcpcd-base depends on libssl3 (>= 3.0.0).
119s  bind9-libs:ppc64el depends on libssl3 (>= 3.0.0).
119s 
119s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70095 files and directories currently installed.)
119s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ...
119s Selecting previously unselected package libssl3t64:ppc64el.
119s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70084 files and directories currently installed.)
119s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_ppc64el.deb ...
119s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu1) ...
119s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu1) ...
119s Setting up openssl (3.0.13-0ubuntu1) ...
119s Processing triggers for man-db (2.12.0-3) ...
120s Processing triggers for libc-bin (2.39-0ubuntu2) ...
120s Reading package lists...
120s Building dependency tree...
120s Reading state information...
120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
121s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
121s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
121s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
121s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
122s Reading package lists...
122s Reading package lists...
122s Building dependency tree...
122s Reading state information...
123s Calculating upgrade...
123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
123s Reading package lists...
123s Building dependency tree...
123s Reading state information...
123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
126s autopkgtest [19:58:45]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024
126s autopkgtest [19:58:45]: @@@@@@@@@@@@@@@@@@@@ apt-source mcaller
128s Get:1 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (dsc) [2372 B]
128s Get:2 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (tar) [6613 kB]
128s Get:3 http://ftpmaster.internal/ubuntu noble/universe mcaller 1.0.3+git20210624.b415090-3 (diff) [7488 B]
128s gpgv: Signature made Wed Apr 27 22:26:52 2022 UTC
128s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
128s gpgv:                issuer "emollier@debian.org"
128s gpgv: Can't check signature: No public key
128s dpkg-source: warning: cannot verify inline signature for ./mcaller_1.0.3+git20210624.b415090-3.dsc: no acceptable signature found
128s autopkgtest [19:58:47]: testing package mcaller version 1.0.3+git20210624.b415090-3
129s autopkgtest [19:58:48]: build not needed
130s autopkgtest [19:58:49]: test run-unit-test: preparing testbed
135s Reading package lists...
135s Building dependency tree...
135s Reading state information...
135s Starting pkgProblemResolver with broken count: 0
135s Starting 2 pkgProblemResolver with broken count: 0
135s Done
135s The following additional packages will be installed:
135s   blt fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono
135s   fonts-lyx fonts-urw-base35 libaec0 libblas3 libcairo2 libdeflate0
135s   libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3
135s   libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64 libhts3 libhtscodecs2
135s   libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui
135s   liblapack3 liblbfgsb0 liblcms2-2 liblerc4 liblzf1 libopenjp2-7 libpixman-1-0
135s   libqhull-r8.0 libraqm0 libsharpyuv0 libsz2 libtcl8.6 libtiff6 libtk8.6
135s   libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2
135s   libxrender1 libxslt1.1 libxss1 mcaller python-matplotlib-data
135s   python3-appdirs python3-biopython python3-brotli python3-cairo
135s   python3-contourpy python3-cycler python3-dateutil python3-decorator
135s   python3-fonttools python3-freetype python3-fs python3-h5py
135s   python3-h5py-serial python3-joblib python3-kiwisolver python3-lxml
135s   python3-lz4 python3-matplotlib python3-mpmath python3-numpy
135s   python3-packaging python3-pandas python3-pandas-lib python3-pil
135s   python3-pil.imagetk python3-pysam python3-reportlab python3-rlpycairo
135s   python3-scipy python3-seaborn python3-sklearn python3-sklearn-lib
135s   python3-sympy python3-threadpoolctl python3-tk python3-ufolib2
135s   python3-unicodedata2 sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib
135s   x11-common xfonts-encodings xfonts-utils xml-core
135s Suggested packages:
135s   blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre
135s   libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 graphmap bwa clustalo
135s   clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank
135s   probcons python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml
135s   samtools t-coffee wise python-cycler-doc python-h5py-doc python-lxml-doc
135s   cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0
135s   inkscape ipython3 librsvg2-common python3-cairocffi python3-gi-cairo
135s   python3-gobject python3-pyqt5 python3-sip python3-tornado
135s   texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc
135s   gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels
135s   python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc
135s   rl-accel rl-renderpm python-scipy-doc python3-dap python-sklearn-doc
135s   texlive-fonts-extra python-sympy-doc tix python3-tk-dbg sgml-base-doc
135s   debhelper
135s Recommended packages:
135s   javascript-common nanopolish | poretools python-biopython-doc ncbi-blast+
135s   python3-pytest python3-simplejson python3-psutil python3-bs4
135s   python3-cssselect python3-html5lib python3-bottleneck python3-numexpr
135s   python3-odf python3-openpyxl python3-tables python3-olefile g++
135s   | c++-compiler python3-patsy isympy-common
135s The following NEW packages will be installed:
135s   autopkgtest-satdep blt fontconfig-config fonts-dejavu-core
135s   fonts-dejavu-extra fonts-dejavu-mono fonts-lyx fonts-urw-base35 libaec0
135s   libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5
135s   libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-hl-100t64
135s   libhts3 libhtscodecs2 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
135s   libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4
135s   liblzf1 libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 libsharpyuv0
135s   libsz2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3
135s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 mcaller
135s   python-matplotlib-data python3-appdirs python3-biopython python3-brotli
135s   python3-cairo python3-contourpy python3-cycler python3-dateutil
135s   python3-decorator python3-fonttools python3-freetype python3-fs python3-h5py
135s   python3-h5py-serial python3-joblib python3-kiwisolver python3-lxml
135s   python3-lz4 python3-matplotlib python3-mpmath python3-numpy
135s   python3-packaging python3-pandas python3-pandas-lib python3-pil
135s   python3-pil.imagetk python3-pysam python3-reportlab python3-rlpycairo
135s   python3-scipy python3-seaborn python3-sklearn python3-sklearn-lib
135s   python3-sympy python3-threadpoolctl python3-tk python3-ufolib2
135s   python3-unicodedata2 sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib
135s   x11-common xfonts-encodings xfonts-utils xml-core
135s 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded.
135s Need to get 116 MB/116 MB of archives.
135s After this operation, 587 MB of additional disk space will be used.
135s Get:1 /tmp/autopkgtest.f3Esgo/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [704 B]
135s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el sgml-base all 1.31 [11.4 kB]
135s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.13+dfsg-2 [1179 kB]
136s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
136s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
136s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontenc1 ppc64el 1:1.1.8-1 [15.7 kB]
136s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB]
136s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
136s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-utils ppc64el 1:7.7+6build2 [112 kB]
136s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
136s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB]
136s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB]
136s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB]
136s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1 [59.8 kB]
136s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build2 [8982 B]
136s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.13-2 [916 kB]
136s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el tk8.6-blt2.5 ppc64el 2.5.3+dfsg-7 [778 kB]
136s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el blt ppc64el 2.5.3+dfsg-7 [4832 B]
136s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-extra all 2.37-8 [1947 kB]
136s Get:20 http://ftpmaster.internal/ubuntu noble/universe ppc64el fonts-lyx all 2.4.0~RC3-1 [170 kB]
136s Get:21 http://ftpmaster.internal/ubuntu noble/universe ppc64el libaec0 ppc64el 1.1.2-1 [29.9 kB]
136s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB]
136s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB]
136s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB]
136s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B]
136s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB]
136s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
136s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB]
136s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB]
136s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB]
137s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB]
137s Get:32 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsz2 ppc64el 1.1.2-1 [5472 B]
137s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhdf5-103-1t64 ppc64el 1.10.10+repack-3.1ubuntu2 [1395 kB]
137s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhdf5-hl-100t64 ppc64el 1.10.10+repack-3.1ubuntu2 [70.9 kB]
137s Get:35 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB]
137s Get:36 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB]
137s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB]
137s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB]
137s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
137s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
137s Get:41 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
137s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB]
137s Get:43 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblbfgsb0 ppc64el 3.0+dfsg.4-1 [32.8 kB]
137s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB]
137s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB]
137s Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el liblzf1 ppc64el 3.6-4 [7920 B]
137s Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el libqhull-r8.0 ppc64el 2020.2-6 [220 kB]
137s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB]
137s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB]
137s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB]
137s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB]
137s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB]
137s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB]
137s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB]
137s Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libxslt1.1 ppc64el 1.1.35-1 [185 kB]
137s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-joblib all 1.3.2-1 [207 kB]
137s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB]
137s Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-decorator all 5.1.1-5 [10.1 kB]
137s Get:59 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-scipy ppc64el 1.11.4-6 [21.4 MB]
137s Get:60 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-threadpoolctl all 3.1.0-1 [21.3 kB]
137s Get:61 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-sklearn-lib ppc64el 1.4.1.post1+dfsg-1 [6817 kB]
138s Get:62 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-sklearn all 1.4.1.post1+dfsg-1 [2261 kB]
138s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-h5py-serial ppc64el 3.10.0-1ubuntu2 [955 kB]
138s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-h5py all 3.10.0-1ubuntu2 [7980 B]
138s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-tk ppc64el 3.11.5-1 [116 kB]
138s Get:66 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pil.imagetk ppc64el 10.2.0-1 [10.1 kB]
138s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB]
138s Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB]
138s Get:69 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-cairo ppc64el 1.25.1-2 [162 kB]
138s Get:70 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-freetype all 2.4.0-1 [83.1 kB]
138s Get:71 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
138s Get:72 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-reportlab all 4.1.0-1 [683 kB]
138s Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el xml-core all 0.19 [20.3 kB]
138s Get:74 http://ftpmaster.internal/ubuntu noble/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
138s Get:75 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biopython ppc64el 1.81+dfsg-3 [1738 kB]
138s Get:76 http://ftpmaster.internal/ubuntu noble/universe ppc64el python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB]
138s Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-dateutil all 2.8.2-3 [79.2 kB]
138s Get:78 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-contourpy ppc64el 1.0.7-1build2 [300 kB]
138s Get:79 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cycler all 0.11.0-2 [8202 B]
138s Get:80 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-brotli ppc64el 1.1.0-2 [420 kB]
138s Get:81 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB]
138s Get:82 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-mpmath all 1.2.1-3 [421 kB]
138s Get:83 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-sympy all 1.12-7 [3966 kB]
138s Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-appdirs all 1.4.4-4 [10.9 kB]
138s Get:85 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fs all 2.4.16-3 [91.1 kB]
138s Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-lxml ppc64el 5.1.0-1 [2191 kB]
138s Get:87 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-lz4 ppc64el 4.0.2+dfsg-1build2 [28.8 kB]
138s Get:88 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-unicodedata2 ppc64el 15.1.0+ds-1 [368 kB]
138s Get:89 http://ftpmaster.internal/ubuntu noble/universe ppc64el unicode-data all 15.1.0-1 [8878 kB]
138s Get:90 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-fonttools ppc64el 4.46.0-1 [1746 kB]
138s Get:91 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-kiwisolver ppc64el 1.4.4-1build2 [76.5 kB]
138s Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 23.2-1 [40.6 kB]
138s Get:93 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-matplotlib ppc64el 3.6.3-1ubuntu3 [7651 kB]
139s Get:94 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas-lib ppc64el 2.1.4+dfsg-4ubuntu2 [8837 kB]
139s Get:95 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB]
139s Get:96 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-seaborn all 0.13.2-2 [225 kB]
139s Get:97 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pysam ppc64el 0.22.0+ds-1 [5037 kB]
139s Get:98 http://ftpmaster.internal/ubuntu noble/universe ppc64el mcaller all 1.0.3+git20210624.b415090-3 [19.3 kB]
139s Fetched 116 MB in 4s (31.0 MB/s)
139s Selecting previously unselected package sgml-base.
139s (Reading database ... 
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139s Preparing to unpack .../00-sgml-base_1.31_all.deb ...
139s Unpacking sgml-base (1.31) ...
139s Selecting previously unselected package libtcl8.6:ppc64el.
139s Preparing to unpack .../01-libtcl8.6_8.6.13+dfsg-2_ppc64el.deb ...
139s Unpacking libtcl8.6:ppc64el (8.6.13+dfsg-2) ...
139s Selecting previously unselected package fonts-dejavu-mono.
139s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ...
139s Unpacking fonts-dejavu-mono (2.37-8) ...
139s Selecting previously unselected package fonts-dejavu-core.
139s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ...
140s Unpacking fonts-dejavu-core (2.37-8) ...
140s Selecting previously unselected package libfontenc1:ppc64el.
140s Preparing to unpack .../04-libfontenc1_1%3a1.1.8-1_ppc64el.deb ...
140s Unpacking libfontenc1:ppc64el (1:1.1.8-1) ...
140s Selecting previously unselected package x11-common.
140s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu2_all.deb ...
140s Unpacking x11-common (1:7.7+23ubuntu2) ...
140s Selecting previously unselected package xfonts-encodings.
140s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
140s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
140s Selecting previously unselected package xfonts-utils.
140s Preparing to unpack .../07-xfonts-utils_1%3a7.7+6build2_ppc64el.deb ...
140s Unpacking xfonts-utils (1:7.7+6build2) ...
140s Selecting previously unselected package fonts-urw-base35.
140s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ...
140s Unpacking fonts-urw-base35 (20200910-8) ...
140s Selecting previously unselected package fontconfig-config.
140s Preparing to unpack .../09-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ...
140s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
140s Selecting previously unselected package libfontconfig1:ppc64el.
140s Preparing to unpack .../10-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ...
140s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
140s Selecting previously unselected package libxrender1:ppc64el.
140s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ...
140s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ...
140s Selecting previously unselected package libxft2:ppc64el.
140s Preparing to unpack .../12-libxft2_2.3.6-1_ppc64el.deb ...
140s Unpacking libxft2:ppc64el (2.3.6-1) ...
140s Selecting previously unselected package libxss1:ppc64el.
140s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build2_ppc64el.deb ...
140s Unpacking libxss1:ppc64el (1:1.2.3-1build2) ...
140s Selecting previously unselected package libtk8.6:ppc64el.
140s Preparing to unpack .../14-libtk8.6_8.6.13-2_ppc64el.deb ...
140s Unpacking libtk8.6:ppc64el (8.6.13-2) ...
140s Selecting previously unselected package tk8.6-blt2.5.
140s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-7_ppc64el.deb ...
140s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ...
140s Selecting previously unselected package blt.
140s Preparing to unpack .../16-blt_2.5.3+dfsg-7_ppc64el.deb ...
140s Unpacking blt (2.5.3+dfsg-7) ...
140s Selecting previously unselected package fonts-dejavu-extra.
140s Preparing to unpack .../17-fonts-dejavu-extra_2.37-8_all.deb ...
140s Unpacking fonts-dejavu-extra (2.37-8) ...
140s Selecting previously unselected package fonts-lyx.
140s Preparing to unpack .../18-fonts-lyx_2.4.0~RC3-1_all.deb ...
140s Unpacking fonts-lyx (2.4.0~RC3-1) ...
140s Selecting previously unselected package libaec0:ppc64el.
140s Preparing to unpack .../19-libaec0_1.1.2-1_ppc64el.deb ...
140s Unpacking libaec0:ppc64el (1.1.2-1) ...
140s Selecting previously unselected package libblas3:ppc64el.
140s Preparing to unpack .../20-libblas3_3.12.0-3_ppc64el.deb ...
140s Unpacking libblas3:ppc64el (3.12.0-3) ...
140s Selecting previously unselected package libpixman-1-0:ppc64el.
140s Preparing to unpack .../21-libpixman-1-0_0.42.2-1_ppc64el.deb ...
140s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ...
140s Selecting previously unselected package libxcb-render0:ppc64el.
140s Preparing to unpack .../22-libxcb-render0_1.15-1_ppc64el.deb ...
140s Unpacking libxcb-render0:ppc64el (1.15-1) ...
140s Selecting previously unselected package libxcb-shm0:ppc64el.
140s Preparing to unpack .../23-libxcb-shm0_1.15-1_ppc64el.deb ...
140s Unpacking libxcb-shm0:ppc64el (1.15-1) ...
140s Selecting previously unselected package libcairo2:ppc64el.
140s Preparing to unpack .../24-libcairo2_1.18.0-1_ppc64el.deb ...
140s Unpacking libcairo2:ppc64el (1.18.0-1) ...
140s Selecting previously unselected package libdeflate0:ppc64el.
140s Preparing to unpack .../25-libdeflate0_1.19-1_ppc64el.deb ...
140s Unpacking libdeflate0:ppc64el (1.19-1) ...
140s Selecting previously unselected package libgfortran5:ppc64el.
140s Preparing to unpack .../26-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ...
140s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
140s Selecting previously unselected package libgomp1:ppc64el.
140s Preparing to unpack .../27-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ...
140s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ...
140s Selecting previously unselected package libgraphite2-3:ppc64el.
140s Preparing to unpack .../28-libgraphite2-3_1.3.14-2_ppc64el.deb ...
140s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ...
140s Selecting previously unselected package libharfbuzz0b:ppc64el.
140s Preparing to unpack .../29-libharfbuzz0b_8.3.0-2_ppc64el.deb ...
140s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ...
140s Selecting previously unselected package libsz2:ppc64el.
140s Preparing to unpack .../30-libsz2_1.1.2-1_ppc64el.deb ...
140s Unpacking libsz2:ppc64el (1.1.2-1) ...
140s Selecting previously unselected package libhdf5-103-1t64:ppc64el.
140s Preparing to unpack .../31-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu2_ppc64el.deb ...
140s Unpacking libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu2) ...
140s Selecting previously unselected package libhdf5-hl-100t64:ppc64el.
140s Preparing to unpack .../32-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu2_ppc64el.deb ...
140s Unpacking libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu2) ...
140s Selecting previously unselected package libhtscodecs2:ppc64el.
140s Preparing to unpack .../33-libhtscodecs2_1.6.0-1_ppc64el.deb ...
140s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ...
140s Selecting previously unselected package libhts3:ppc64el.
140s Preparing to unpack .../34-libhts3_1.18+ds-1_ppc64el.deb ...
140s Unpacking libhts3:ppc64el (1.18+ds-1) ...
140s Selecting previously unselected package libimagequant0:ppc64el.
141s Preparing to unpack .../35-libimagequant0_2.18.0-1_ppc64el.deb ...
141s Unpacking libimagequant0:ppc64el (2.18.0-1) ...
141s Selecting previously unselected package libjpeg-turbo8:ppc64el.
141s Preparing to unpack .../36-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ...
141s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
141s Selecting previously unselected package libjpeg8:ppc64el.
141s Preparing to unpack .../37-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
141s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
141s Selecting previously unselected package libjs-jquery.
141s Preparing to unpack .../38-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
141s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
141s Selecting previously unselected package libjs-jquery-ui.
141s Preparing to unpack .../39-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
141s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
141s Selecting previously unselected package liblapack3:ppc64el.
141s Preparing to unpack .../40-liblapack3_3.12.0-3_ppc64el.deb ...
141s Unpacking liblapack3:ppc64el (3.12.0-3) ...
141s Selecting previously unselected package liblbfgsb0:ppc64el.
141s Preparing to unpack .../41-liblbfgsb0_3.0+dfsg.4-1_ppc64el.deb ...
141s Unpacking liblbfgsb0:ppc64el (3.0+dfsg.4-1) ...
141s Selecting previously unselected package liblcms2-2:ppc64el.
141s Preparing to unpack .../42-liblcms2-2_2.14-2_ppc64el.deb ...
141s Unpacking liblcms2-2:ppc64el (2.14-2) ...
141s Selecting previously unselected package liblerc4:ppc64el.
141s Preparing to unpack .../43-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ...
141s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
141s Selecting previously unselected package liblzf1:ppc64el.
141s Preparing to unpack .../44-liblzf1_3.6-4_ppc64el.deb ...
141s Unpacking liblzf1:ppc64el (3.6-4) ...
141s Selecting previously unselected package libqhull-r8.0:ppc64el.
141s Preparing to unpack .../45-libqhull-r8.0_2020.2-6_ppc64el.deb ...
141s Unpacking libqhull-r8.0:ppc64el (2020.2-6) ...
141s Selecting previously unselected package libraqm0:ppc64el.
141s Preparing to unpack .../46-libraqm0_0.10.1-1_ppc64el.deb ...
141s Unpacking libraqm0:ppc64el (0.10.1-1) ...
141s Selecting previously unselected package libsharpyuv0:ppc64el.
141s Preparing to unpack .../47-libsharpyuv0_1.3.2-0.4_ppc64el.deb ...
141s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ...
141s Selecting previously unselected package libjbig0:ppc64el.
141s Preparing to unpack .../48-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ...
141s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ...
141s Selecting previously unselected package libwebp7:ppc64el.
141s Preparing to unpack .../49-libwebp7_1.3.2-0.4_ppc64el.deb ...
141s Unpacking libwebp7:ppc64el (1.3.2-0.4) ...
141s Selecting previously unselected package libtiff6:ppc64el.
141s Preparing to unpack .../50-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ...
141s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
141s Selecting previously unselected package libwebpdemux2:ppc64el.
141s Preparing to unpack .../51-libwebpdemux2_1.3.2-0.4_ppc64el.deb ...
141s Unpacking libwebpdemux2:ppc64el (1.3.2-0.4) ...
141s Selecting previously unselected package libwebpmux3:ppc64el.
141s Preparing to unpack .../52-libwebpmux3_1.3.2-0.4_ppc64el.deb ...
141s Unpacking libwebpmux3:ppc64el (1.3.2-0.4) ...
141s Selecting previously unselected package libxslt1.1:ppc64el.
141s Preparing to unpack .../53-libxslt1.1_1.1.35-1_ppc64el.deb ...
141s Unpacking libxslt1.1:ppc64el (1.1.35-1) ...
141s Selecting previously unselected package python3-joblib.
141s Preparing to unpack .../54-python3-joblib_1.3.2-1_all.deb ...
141s Unpacking python3-joblib (1.3.2-1) ...
141s Selecting previously unselected package python3-numpy.
141s Preparing to unpack .../55-python3-numpy_1%3a1.24.2-2_ppc64el.deb ...
141s Unpacking python3-numpy (1:1.24.2-2) ...
141s Selecting previously unselected package python3-decorator.
141s Preparing to unpack .../56-python3-decorator_5.1.1-5_all.deb ...
141s Unpacking python3-decorator (5.1.1-5) ...
141s Selecting previously unselected package python3-scipy.
141s Preparing to unpack .../57-python3-scipy_1.11.4-6_ppc64el.deb ...
141s Unpacking python3-scipy (1.11.4-6) ...
142s Selecting previously unselected package python3-threadpoolctl.
142s Preparing to unpack .../58-python3-threadpoolctl_3.1.0-1_all.deb ...
142s Unpacking python3-threadpoolctl (3.1.0-1) ...
142s Selecting previously unselected package python3-sklearn-lib:ppc64el.
142s Preparing to unpack .../59-python3-sklearn-lib_1.4.1.post1+dfsg-1_ppc64el.deb ...
142s Unpacking python3-sklearn-lib:ppc64el (1.4.1.post1+dfsg-1) ...
143s Selecting previously unselected package python3-sklearn.
143s Preparing to unpack .../60-python3-sklearn_1.4.1.post1+dfsg-1_all.deb ...
143s Unpacking python3-sklearn (1.4.1.post1+dfsg-1) ...
143s Selecting previously unselected package python3-h5py-serial.
143s Preparing to unpack .../61-python3-h5py-serial_3.10.0-1ubuntu2_ppc64el.deb ...
143s Unpacking python3-h5py-serial (3.10.0-1ubuntu2) ...
143s Selecting previously unselected package python3-h5py.
143s Preparing to unpack .../62-python3-h5py_3.10.0-1ubuntu2_all.deb ...
143s Unpacking python3-h5py (3.10.0-1ubuntu2) ...
143s Selecting previously unselected package python3-tk:ppc64el.
143s Preparing to unpack .../63-python3-tk_3.11.5-1_ppc64el.deb ...
143s Unpacking python3-tk:ppc64el (3.11.5-1) ...
143s Selecting previously unselected package python3-pil.imagetk:ppc64el.
143s Preparing to unpack .../64-python3-pil.imagetk_10.2.0-1_ppc64el.deb ...
143s Unpacking python3-pil.imagetk:ppc64el (10.2.0-1) ...
143s Selecting previously unselected package libopenjp2-7:ppc64el.
143s Preparing to unpack .../65-libopenjp2-7_2.5.0-2_ppc64el.deb ...
143s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ...
143s Selecting previously unselected package python3-pil:ppc64el.
143s Preparing to unpack .../66-python3-pil_10.2.0-1_ppc64el.deb ...
143s Unpacking python3-pil:ppc64el (10.2.0-1) ...
143s Selecting previously unselected package python3-cairo.
143s Preparing to unpack .../67-python3-cairo_1.25.1-2_ppc64el.deb ...
143s Unpacking python3-cairo (1.25.1-2) ...
143s Selecting previously unselected package python3-freetype.
143s Preparing to unpack .../68-python3-freetype_2.4.0-1_all.deb ...
143s Unpacking python3-freetype (2.4.0-1) ...
143s Selecting previously unselected package python3-rlpycairo.
143s Preparing to unpack .../69-python3-rlpycairo_0.3.0-3_all.deb ...
143s Unpacking python3-rlpycairo (0.3.0-3) ...
143s Selecting previously unselected package python3-reportlab.
143s Preparing to unpack .../70-python3-reportlab_4.1.0-1_all.deb ...
143s Unpacking python3-reportlab (4.1.0-1) ...
143s Selecting previously unselected package xml-core.
143s Preparing to unpack .../71-xml-core_0.19_all.deb ...
143s Unpacking xml-core (0.19) ...
143s Selecting previously unselected package w3c-sgml-lib.
143s Preparing to unpack .../72-w3c-sgml-lib_1.3-3_all.deb ...
143s Unpacking w3c-sgml-lib (1.3-3) ...
143s Selecting previously unselected package python3-biopython.
143s Preparing to unpack .../73-python3-biopython_1.81+dfsg-3_ppc64el.deb ...
143s Unpacking python3-biopython (1.81+dfsg-3) ...
143s Selecting previously unselected package python-matplotlib-data.
143s Preparing to unpack .../74-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ...
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143s Selecting previously unselected package python3-dateutil.
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143s Unpacking python3-dateutil (2.8.2-3) ...
143s Selecting previously unselected package python3-contourpy.
143s Preparing to unpack .../76-python3-contourpy_1.0.7-1build2_ppc64el.deb ...
143s Unpacking python3-contourpy (1.0.7-1build2) ...
143s Selecting previously unselected package python3-cycler.
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143s Unpacking python3-cycler (0.11.0-2) ...
143s Selecting previously unselected package python3-brotli.
143s Preparing to unpack .../78-python3-brotli_1.1.0-2_ppc64el.deb ...
143s Unpacking python3-brotli (1.1.0-2) ...
143s Selecting previously unselected package python3-ufolib2.
143s Preparing to unpack .../79-python3-ufolib2_0.16.0+dfsg1-1_all.deb ...
143s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ...
143s Selecting previously unselected package python3-mpmath.
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143s Selecting previously unselected package python3-sympy.
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143s Unpacking python3-sympy (1.12-7) ...
144s Selecting previously unselected package python3-appdirs.
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144s Selecting previously unselected package python3-lxml:ppc64el.
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144s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ...
144s Selecting previously unselected package python3-unicodedata2.
144s Preparing to unpack .../86-python3-unicodedata2_15.1.0+ds-1_ppc64el.deb ...
144s Unpacking python3-unicodedata2 (15.1.0+ds-1) ...
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144s Unpacking unicode-data (15.1.0-1) ...
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144s Selecting previously unselected package python3-kiwisolver.
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146s Unpacking autopkgtest-satdep (0) ...
146s Setting up libhtscodecs2:ppc64el (1.6.0-1) ...
146s Setting up libgraphite2-3:ppc64el (1.3.14-2) ...
146s Setting up liblcms2-2:ppc64el (2.14-2) ...
146s Setting up libpixman-1-0:ppc64el (0.42.2-1) ...
146s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ...
146s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
146s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ...
146s Setting up python3-joblib (1.3.2-1) ...
146s Setting up python3-lz4 (4.0.2+dfsg-1build2) ...
146s Setting up libxcb-render0:ppc64el (1.15-1) ...
146s Setting up python3-unicodedata2 (15.1.0+ds-1) ...
146s Setting up fonts-lyx (2.4.0~RC3-1) ...
146s Setting up python3-threadpoolctl (3.1.0-1) ...
146s Setting up x11-common (1:7.7+23ubuntu2) ...
147s Setting up libdeflate0:ppc64el (1.19-1) ...
147s Setting up libqhull-r8.0:ppc64el (2020.2-6) ...
147s Setting up libxcb-shm0:ppc64el (1.15-1) ...
147s Setting up libgomp1:ppc64el (14-20240303-1ubuntu1) ...
147s Setting up python3-freetype (2.4.0-1) ...
147s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ...
147s Setting up libaec0:ppc64el (1.1.2-1) ...
147s Setting up unicode-data (15.1.0-1) ...
147s Setting up python3-decorator (5.1.1-5) ...
147s Setting up libfontenc1:ppc64el (1:1.1.8-1) ...
147s Setting up libblas3:ppc64el (3.12.0-3) ...
147s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
147s Setting up python3-packaging (23.2-1) ...
147s Setting up python3-brotli (1.1.0-2) ...
147s Setting up liblzf1:ppc64el (3.6-4) ...
147s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
147s Setting up python3-cycler (0.11.0-2) ...
148s Setting up libimagequant0:ppc64el (2.18.0-1) ...
148s Setting up fonts-dejavu-mono (2.37-8) ...
148s Setting up python3-kiwisolver (1.4.4-1build2) ...
148s Setting up libtcl8.6:ppc64el (8.6.13+dfsg-2) ...
148s Setting up fonts-dejavu-core (2.37-8) ...
148s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
148s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
148s Setting up libwebp7:ppc64el (1.3.2-0.4) ...
148s Setting up fonts-dejavu-extra (2.37-8) ...
148s Setting up libxslt1.1:ppc64el (1.1.35-1) ...
148s Setting up libopenjp2-7:ppc64el (2.5.0-2) ...
148s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ...
148s Setting up python3-dateutil (2.8.2-3) ...
148s Setting up sgml-base (1.31) ...
148s Setting up libxss1:ppc64el (1:1.2.3-1build2) ...
148s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
148s Setting up python3-mpmath (1.2.1-3) ...
148s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ...
148s Setting up libwebpmux3:ppc64el (1.3.2-0.4) ...
148s Setting up python3-appdirs (1.4.4-4) ...
148s Setting up libsz2:ppc64el (1.1.2-1) ...
148s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ...
148s Setting up python3-sympy (1.12-7) ...
154s Setting up liblapack3:ppc64el (3.12.0-3) ...
154s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
154s Setting up libhts3:ppc64el (1.18+ds-1) ...
154s Setting up python3-pysam (0.22.0+ds-1) ...
154s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
155s Setting up libwebpdemux2:ppc64el (1.3.2-0.4) ...
155s Setting up xfonts-utils (1:7.7+6build2) ...
155s Setting up python3-fs (2.4.16-3) ...
155s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
155s Setting up libraqm0:ppc64el (0.10.1-1) ...
155s Setting up python3-numpy (1:1.24.2-2) ...
157s Setting up python3-lxml:ppc64el (5.1.0-1) ...
157s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ...
157s Setting up xml-core (0.19) ...
157s Setting up python3-contourpy (1.0.7-1build2) ...
158s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ...
158s Setting up libhdf5-103-1t64:ppc64el (1.10.10+repack-3.1ubuntu2) ...
158s Setting up liblbfgsb0:ppc64el (3.0+dfsg.4-1) ...
158s Setting up libhdf5-hl-100t64:ppc64el (1.10.10+repack-3.1ubuntu2) ...
158s Setting up libxft2:ppc64el (2.3.6-1) ...
158s Setting up python3-scipy (1.11.4-6) ...
161s Setting up libtk8.6:ppc64el (8.6.13-2) ...
161s Setting up python3-pandas-lib:ppc64el (2.1.4+dfsg-4ubuntu2) ...
161s Setting up python3-sklearn-lib:ppc64el (1.4.1.post1+dfsg-1) ...
161s Setting up python3-h5py-serial (3.10.0-1ubuntu2) ...
161s Setting up fonts-urw-base35 (20200910-8) ...
161s Setting up libcairo2:ppc64el (1.18.0-1) ...
161s Setting up python3-pil:ppc64el (10.2.0-1) ...
162s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ...
166s Setting up python3-h5py (3.10.0-1ubuntu2) ...
166s Setting up python3-sklearn (1.4.1.post1+dfsg-1) ...
169s Setting up tk8.6-blt2.5 (2.5.3+dfsg-7) ...
169s Setting up python3-cairo (1.25.1-2) ...
169s Setting up blt (2.5.3+dfsg-7) ...
169s Setting up python3-tk:ppc64el (3.11.5-1) ...
169s Setting up python3-pil.imagetk:ppc64el (10.2.0-1) ...
169s Setting up python3-rlpycairo (0.3.0-3) ...
169s Setting up python3-reportlab (4.1.0-1) ...
170s Setting up python3-fonttools (4.46.0-1) ...
171s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
171s Setting up python3-matplotlib (3.6.3-1ubuntu3) ...
173s Setting up python3-seaborn (0.13.2-2) ...
173s Processing triggers for man-db (2.12.0-3) ...
174s Processing triggers for libc-bin (2.39-0ubuntu2) ...
174s Processing triggers for sgml-base (1.31) ...
174s Setting up w3c-sgml-lib (1.3-3) ...
201s Setting up python3-biopython (1.81+dfsg-3) ...
202s Setting up mcaller (1.0.3+git20210624.b415090-3) ...
202s Setting up autopkgtest-satdep (0) ...
206s (Reading database ... 82391 files and directories currently installed.)
206s Removing autopkgtest-satdep (0) ...
207s autopkgtest [20:00:06]: test run-unit-test: [-----------------------
208s testdata/
208s 1 contigs
208s 1 threads
208s thread finished processing...:
208s 35 observations
208s 35 positions
208s 0 regions with multiple methylated bases
208s 0 observations with skips included
208s 8 observations with too many skips
208s Finished extracting signals
209s testdata/
209s 1 contigs
209s 1 threads
209s thread finished processing...:
209s 9 observations
209s 9 positions
209s 0 regions with multiple methylated bases
209s 0 observations with skips included
209s 2 observations with too many skips
209s Finished extracting signals
210s testdata/
210s 1 contigs
210s 4 threads
210s thread finished processing...:
210s 9 observations
210s 9 positions
210s 0 regions with multiple methylated bases
210s 0 observations with skips included
210s 4 observations with too many skips
210s thread finished processing...:
210s 28 observations
210s 28 positions
210s 0 regions with multiple methylated bases
210s 0 observations with skips included
210s 6 observations with too many skips
210s Error: could not find sequence for reference contig li
210s thread finished processing...:
210s 16 observations
210s 16 positions
210s 0 regions with multiple methylated bases
210s 0 observations with skips included
210s 6 observations with too many skips
211s thread finished processing...:
211s 44 observations
211s 44 positions
211s 1 regions with multiple methylated bases
211s 0 observations with skips included
211s 10 observations with too many skips
211s Finished extracting signals
211s Merging files...
211s Training...
211s ['A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A', 'A']
211s [[-0.18999999999999992, -1.6799999999999997, -2.3, 0.56, -1.41, 1.48, 7.055265349382997], [-1.1300000000000001, -1.67, -1.1, -0.5774999999999999, 0.42, 1.0225, 7.055265349382997], [0.0050000000000000044, -0.29500000000000004, -0.54, 3.96, 1.47, 0.06499999999999995, 7.055265349382997], [3.255, 3.925, 0.03999999999999998, -0.15599999999999997, -1.01, 1.3533333333333333, 7.055265349382997], [-0.07999999999999996, -1.3666666666666665, 0.84, -0.5449999999999999, -3.22, -1.53, 7.055265349382997], [-1.74, -2.56, -2.0774999999999997, 1.84, -0.09999999999999998, -0.3, 7.055265349382997], [1.92, 2.75, 1.59, 1.6433333333333333, 1.59, 1.27, 7.055265349382997], [-1.44, -5.03, 1.4449999999999998, 0.4000000000000001, -0.588, -0.55, 7.055265349382997], [-1.4433333333333334, -0.020000000000000018, -0.0366666666666667, -0.5499999999999999, 0.64, -2.71, 7.055265349382997], [-1.23, -1.635, -0.24, 1.1033333333333333, -2.215, -2.93, 7.055265349382997]]
211s ['GGATTMTTTCA', 'CTGGAMAAAGC', 'GGGCCMTTACC', 'GGTGGMTGAAT', 'GGTTAMCGCGT', 'TGTGGMGAAAC', 'AGAACMCTTTC', 'AAATGMGATTT', 'AGTAGMTTGAT', 'ACTTAMCCGGT']
211s NN general model scores: 0.875,0.5,0.5,1.0,0.5
211s Cross validation accuracy: 0.68 (+/- 0.44)
211s Finished training
211s PASS
211s autopkgtest [20:00:10]: test run-unit-test: -----------------------]
212s autopkgtest [20:00:11]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
212s run-unit-test        PASS
212s autopkgtest [20:00:11]: @@@@@@@@@@@@@@@@@@@@ summary
212s run-unit-test        PASS
223s Creating nova instance adt-noble-ppc64el-mcaller-20240314-195639-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240314.img (UUID a031584c-aec8-4412-bff6-4238354f4d17)...