0s autopkgtest [23:51:13]: starting date and time: 2024-04-18 23:51:13+0000 0s autopkgtest [23:51:13]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [23:51:13]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8cx98dcq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gsl --apt-upgrade mash --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gsl/2.7.1+dfsg-6ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-9.secgroup --name adt-noble-ppc64el-mash-20240418-235113-juju-7f2275-prod-proposed-migration-environment-2-1f59913a-0f2b-48c5-a114-175a359e773d --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 292s autopkgtest [23:56:05]: testbed dpkg architecture: ppc64el 292s autopkgtest [23:56:05]: testbed apt version: 2.7.14build2 292s autopkgtest [23:56:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 293s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 294s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [57.5 kB] 294s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [381 kB] 295s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B] 295s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.2 kB] 295s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [112 kB] 295s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 295s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [976 B] 295s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 295s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [587 kB] 297s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 297s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [1004 B] 297s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 298s Fetched 1282 kB in 4s (312 kB/s) 299s Reading package lists... 300s sh: 4: dhclient: not found 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s Calculating upgrade... 302s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 302s Reading package lists... 302s Building dependency tree... 302s Reading state information... 302s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 302s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 302s Get:2 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] 303s Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] 303s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 304s Get:5 http://ftpmaster.internal/ubuntu noble/universe Sources [20.0 MB] 313s Get:6 http://ftpmaster.internal/ubuntu noble/main Sources [1383 kB] 314s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el Packages [1337 kB] 314s Get:8 http://ftpmaster.internal/ubuntu noble/universe ppc64el Packages [15.1 MB] 320s Fetched 38.1 MB in 18s (2095 kB/s) 321s Reading package lists... 321s Reading package lists... 321s Building dependency tree... 321s Reading state information... 322s Calculating upgrade... 322s The following packages will be upgraded: 322s libnuma1 make netcat-openbsd numactl 322s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 322s Need to get 332 kB of archives. 322s After this operation, 16.4 kB disk space will be freed. 322s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el netcat-openbsd ppc64el 1.226-1ubuntu2 [46.2 kB] 322s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libnuma1 ppc64el 2.0.18-1build1 [28.2 kB] 322s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el make ppc64el 4.3-4.1build2 [214 kB] 322s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el numactl ppc64el 2.0.18-1build1 [43.9 kB] 322s Fetched 332 kB in 1s (631 kB/s) 323s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 323s Preparing to unpack .../netcat-openbsd_1.226-1ubuntu2_ppc64el.deb ... 323s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ... 323s Preparing to unpack .../libnuma1_2.0.18-1build1_ppc64el.deb ... 323s Unpacking libnuma1:ppc64el (2.0.18-1build1) over (2.0.18-1) ... 323s Preparing to unpack .../make_4.3-4.1build2_ppc64el.deb ... 323s Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ... 323s Preparing to unpack .../numactl_2.0.18-1build1_ppc64el.deb ... 323s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ... 323s Setting up netcat-openbsd (1.226-1ubuntu2) ... 323s Setting up make (4.3-4.1build2) ... 323s Setting up libnuma1:ppc64el (2.0.18-1build1) ... 323s Setting up numactl (2.0.18-1build1) ... 323s Processing triggers for man-db (2.12.0-4build1) ... 323s Processing triggers for libc-bin (2.39-0ubuntu8) ... 324s Reading package lists... 324s Building dependency tree... 324s Reading state information... 324s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 327s autopkgtest [23:56:40]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr 4 22:47:57 UTC 2024 327s autopkgtest [23:56:40]: @@@@@@@@@@@@@@@@@@@@ apt-source mash 330s Get:1 http://ftpmaster.internal/ubuntu noble/universe mash 2.3+dfsg-6 (dsc) [2376 B] 330s Get:2 http://ftpmaster.internal/ubuntu noble/universe mash 2.3+dfsg-6 (tar) [3449 kB] 330s Get:3 http://ftpmaster.internal/ubuntu noble/universe mash 2.3+dfsg-6 (diff) [2158 kB] 331s gpgv: Signature made Mon Dec 18 21:52:17 2023 UTC 331s gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 331s gpgv: Can't check signature: No public key 331s dpkg-source: warning: cannot verify inline signature for ./mash_2.3+dfsg-6.dsc: no acceptable signature found 331s autopkgtest [23:56:44]: testing package mash version 2.3+dfsg-6 332s autopkgtest [23:56:45]: build not needed 340s autopkgtest [23:56:53]: test run-example: preparing testbed 341s Reading package lists... 341s Building dependency tree... 341s Reading state information... 341s Starting pkgProblemResolver with broken count: 0 341s Starting 2 pkgProblemResolver with broken count: 0 341s Done 342s The following additional packages will be installed: 342s libcapnp-1.0.1 libgsl27 libgslcblas0 libmurmurhash2 mash 342s Suggested packages: 342s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html 342s The following NEW packages will be installed: 342s autopkgtest-satdep libcapnp-1.0.1 libgsl27 libgslcblas0 libmurmurhash2 mash 342s 0 upgraded, 6 newly installed, 0 to remove and 0 not upgraded. 342s Need to get 2886 kB/2887 kB of archives. 342s After this operation, 10.9 MB of additional disk space will be used. 342s Get:1 /tmp/autopkgtest.QVEOdZ/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [704 B] 342s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcapnp-1.0.1 ppc64el 1.0.1-3 [1544 kB] 343s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgslcblas0 ppc64el 2.7.1+dfsg-6ubuntu2 [86.6 kB] 343s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgsl27 ppc64el 2.7.1+dfsg-6ubuntu2 [1090 kB] 343s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmurmurhash2 ppc64el 1.6-1 [6626 B] 343s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el mash ppc64el 2.3+dfsg-6 [159 kB] 343s Fetched 2886 kB in 1s (2649 kB/s) 343s Selecting previously unselected package libcapnp-1.0.1:ppc64el. 343s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 343s Preparing to unpack .../0-libcapnp-1.0.1_1.0.1-3_ppc64el.deb ... 343s Unpacking libcapnp-1.0.1:ppc64el (1.0.1-3) ... 343s Selecting previously unselected package libgslcblas0:ppc64el. 343s Preparing to unpack .../1-libgslcblas0_2.7.1+dfsg-6ubuntu2_ppc64el.deb ... 343s Unpacking libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ... 343s Selecting previously unselected package libgsl27:ppc64el. 343s Preparing to unpack .../2-libgsl27_2.7.1+dfsg-6ubuntu2_ppc64el.deb ... 343s Unpacking libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ... 343s Selecting previously unselected package libmurmurhash2:ppc64el. 343s Preparing to unpack .../3-libmurmurhash2_1.6-1_ppc64el.deb ... 343s Unpacking libmurmurhash2:ppc64el (1.6-1) ... 343s Selecting previously unselected package mash. 343s Preparing to unpack .../4-mash_2.3+dfsg-6_ppc64el.deb ... 343s Unpacking mash (2.3+dfsg-6) ... 343s Selecting previously unselected package autopkgtest-satdep. 343s Preparing to unpack .../5-1-autopkgtest-satdep.deb ... 343s Unpacking autopkgtest-satdep (0) ... 343s Setting up libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ... 343s Setting up libmurmurhash2:ppc64el (1.6-1) ... 343s Setting up libcapnp-1.0.1:ppc64el (1.0.1-3) ... 343s Setting up libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ... 343s Setting up mash (2.3+dfsg-6) ... 343s Setting up autopkgtest-satdep (0) ... 343s Processing triggers for man-db (2.12.0-4build1) ... 344s Processing triggers for libc-bin (2.39-0ubuntu8) ... 346s (Reading database ... 72029 files and directories currently installed.) 346s Removing autopkgtest-satdep (0) ... 346s autopkgtest [23:56:59]: test run-example: [----------------------- 346s genome1.fna 346s genome2.fna 346s genome3.fna 347s Sketching genome1.fna (provide sketch file made with "mash sketch" to skip)...done. 347s genome1.fna genome2.fna 0.0222766 0 456/1000 347s Sketching genome1.fna... 347s Writing to genome1.fna.msh... 347s Sketching genome2.fna... 347s Writing to genome2.fna.msh... 347s genome1.fna genome2.fna 0.0222766 0 456/1000 347s Sketching genome1.fna... 347s Sketching genome2.fna... 348s Writing to reference.msh... 348s Header: 348s Hash function (seed): MurmurHash3_x64_128 (42) 348s K-mer size: 21 (64-bit hashes) 348s Alphabet: ACGT (canonical) 348s Target min-hashes per sketch: 1000 348s Sketches: 2 348s 348s Sketches: 348s [Hashes] [Length] [ID] [Comment] 348s 348s 1000 4639675 genome1.fna gi|49175990|ref|NC_000913.2| Escherichia coli str. K-12 substr. MG1655, complete genome 348s 348s 1000 5498450 genome2.fna gi|47118301|dbj|BA000007.2| Escherichia coli O157:H7 str. Sakai DNA, complete genome 348s 348s genome1.fna genome3.fna 0 0 1000/1000 348s genome2.fna genome3.fna 0.0222766 0 456/1000 348s autopkgtest [23:57:01]: test run-example: -----------------------] 349s run-example PASS 349s autopkgtest [23:57:02]: test run-example: - - - - - - - - - - results - - - - - - - - - - 349s autopkgtest [23:57:02]: @@@@@@@@@@@@@@@@@@@@ summary 349s run-example PASS 370s Creating nova instance adt-noble-ppc64el-mash-20240418-235113-juju-7f2275-prod-proposed-migration-environment-2-1f59913a-0f2b-48c5-a114-175a359e773d from image adt/ubuntu-noble-ppc64el-server-20240418.img (UUID af0116ce-26c5-4050-9dd9-30d9ab0ee27b)...