0s autopkgtest [15:47:04]: starting date and time: 2024-03-23 15:47:04+0000 0s autopkgtest [15:47:04]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:47:04]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.zlkebpa_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade lumpy-sv --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-4.secgroup --name adt-noble-ppc64el-lumpy-sv-20240323-154704-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 294s autopkgtest [15:51:58]: testbed dpkg architecture: ppc64el 295s autopkgtest [15:51:59]: testbed apt version: 2.7.12 295s autopkgtest [15:51:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 295s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 296s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 296s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 296s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 296s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 296s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 296s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 296s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 296s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 296s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 297s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 297s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 297s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 300s Fetched 9623 kB in 3s (3615 kB/s) 301s Reading package lists... 303s Reading package lists... 303s Building dependency tree... 303s Reading state information... 304s Calculating upgrade... 304s The following packages will be REMOVED: 304s libssl3 304s The following NEW packages will be installed: 304s libssl3t64 304s The following packages have been kept back: 304s curl 304s The following packages will be upgraded: 304s openssl 304s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 304s Need to get 3151 kB of archives. 304s After this operation, 73.7 kB of additional disk space will be used. 304s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 304s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 305s Fetched 3151 kB in 1s (4234 kB/s) 305s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 305s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 305s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 305s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 305s wget depends on libssl3 (>= 3.0.0). 305s tnftp depends on libssl3 (>= 3.0.0). 305s tcpdump depends on libssl3 (>= 3.0.0). 305s systemd-resolved depends on libssl3 (>= 3.0.0). 305s systemd depends on libssl3 (>= 3.0.0). 305s sudo depends on libssl3 (>= 3.0.0). 305s rsync depends on libssl3 (>= 3.0.0). 305s python3-cryptography depends on libssl3 (>= 3.0.0). 305s openssh-server depends on libssl3 (>= 3.0.10). 305s openssh-client depends on libssl3 (>= 3.0.10). 305s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 305s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 305s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 305s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 305s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 305s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 305s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 305s libnvme1 depends on libssl3 (>= 3.0.0). 305s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 305s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 305s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 305s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 305s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 305s kmod depends on libssl3 (>= 3.0.0). 305s dhcpcd-base depends on libssl3 (>= 3.0.0). 305s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 305s 305s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 305s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 305s Selecting previously unselected package libssl3t64:ppc64el. 305s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 305s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 305s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 305s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 305s Setting up openssl (3.0.13-0ubuntu2) ... 305s Processing triggers for man-db (2.12.0-3) ... 306s Processing triggers for libc-bin (2.39-0ubuntu6) ... 306s Reading package lists... 306s Building dependency tree... 306s Reading state information... 307s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 307s sh: Attempting to set up Debian/Ubuntu apt sources automatically 307s sh: Distribution appears to be Ubuntu 308s Reading package lists... 308s Building dependency tree... 308s Reading state information... 308s eatmydata is already the newest version (131-1). 308s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 309s Reading package lists... 309s Building dependency tree... 309s Reading state information... 309s dbus is already the newest version (1.14.10-4ubuntu1). 309s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 309s Reading package lists... 309s Building dependency tree... 319s Reading state information... 319s rng-tools-debian is already the newest version (2.4). 319s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 319s The following packages will be REMOVED: 319s cloud-init* python3-configobj* python3-debconf* 319s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 319s After this operation, 3256 kB disk space will be freed. 319s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 319s Removing cloud-init (24.1.2-0ubuntu1) ... 319s Removing python3-configobj (5.0.8-3) ... 319s Removing python3-debconf (1.5.86) ... 319s Processing triggers for man-db (2.12.0-3) ... 319s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 319s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 319s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 319s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 319s invoke-rc.d: policy-rc.d denied execution of try-restart. 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 319s linux-generic is already the newest version (6.8.0-11.11+1). 319s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 319s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 319s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 319s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 319s Reading package lists... 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 319s Calculating upgrade... 319s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 319s Reading package lists... 319s Building dependency tree... 319s Reading state information... 319s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 319s autopkgtest [15:52:21]: rebooting testbed after setup commands that affected boot 359s autopkgtest [15:53:03]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 362s autopkgtest [15:53:06]: @@@@@@@@@@@@@@@@@@@@ apt-source lumpy-sv 366s Get:1 http://ftpmaster.internal/ubuntu noble/universe lumpy-sv 0.3.1+dfsg-7build1 (dsc) [2384 B] 366s Get:2 http://ftpmaster.internal/ubuntu noble/universe lumpy-sv 0.3.1+dfsg-7build1 (tar) [112 kB] 366s Get:3 http://ftpmaster.internal/ubuntu noble/universe lumpy-sv 0.3.1+dfsg-7build1 (diff) [39.2 MB] 366s gpgv: Signature made Sat Nov 19 21:49:32 2022 UTC 366s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 366s gpgv: issuer "steve.langasek@ubuntu.com" 366s gpgv: Can't check signature: No public key 366s dpkg-source: warning: cannot verify inline signature for ./lumpy-sv_0.3.1+dfsg-7build1.dsc: no acceptable signature found 372s autopkgtest [15:53:16]: testing package lumpy-sv version 0.3.1+dfsg-7build1 737s autopkgtest [15:59:21]: build not needed 1118s autopkgtest [16:05:42]: test run-unit-test: preparing testbed 1128s Reading package lists... 1128s Building dependency tree... 1128s Reading state information... 1128s Starting pkgProblemResolver with broken count: 0 1128s Starting 2 pkgProblemResolver with broken count: 0 1128s Done 1128s The following additional packages will be installed: 1128s bamkit libbamtools2.5.2 libblas3 libdeflate0 libgfortran5 libgzstream0 1128s libhts3 libhtscodecs2 liblapack3 lumpy-sv lumpy-sv-examples python3-numpy 1128s python3-pysam samblaster samtools 1128s Suggested packages: 1128s gcc gfortran python3-dev python3-pytest cwltool 1128s Recommended packages: 1128s sambamba 1128s The following NEW packages will be installed: 1128s autopkgtest-satdep bamkit libbamtools2.5.2 libblas3 libdeflate0 libgfortran5 1128s libgzstream0 libhts3 libhtscodecs2 liblapack3 lumpy-sv lumpy-sv-examples 1128s python3-numpy python3-pysam samblaster samtools 1128s 0 upgraded, 16 newly installed, 0 to remove and 0 not upgraded. 1128s Need to get 70.5 MB/70.5 MB of archives. 1128s After this operation, 152 MB of additional disk space will be used. 1128s Get:1 /tmp/autopkgtest.vIkEVf/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 1128s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 1129s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 1129s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 1129s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pysam ppc64el 0.22.0+ds-1 [5037 kB] 1129s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el bamkit all 0.0.1+git20170413.ccd079d-3 [14.9 kB] 1129s Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el libbamtools2.5.2 ppc64el 2.5.2+dfsg-4 [161 kB] 1129s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 1129s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 1129s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgzstream0 ppc64el 1.5+git20171107.9a20658-1 [7734 B] 1129s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 1129s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el samblaster ppc64el 0.1.26-4 [27.4 kB] 1129s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools ppc64el 1.19.2-1 [669 kB] 1129s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 1129s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el lumpy-sv ppc64el 0.3.1+dfsg-7build1 [146 kB] 1129s Get:16 http://ftpmaster.internal/ubuntu noble/universe ppc64el lumpy-sv-examples all 0.3.1+dfsg-7build1 [54.6 MB] 1132s Fetched 70.5 MB in 3s (22.3 MB/s) 1132s Selecting previously unselected package libdeflate0:ppc64el. 1132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 1132s Preparing to unpack .../00-libdeflate0_1.19-1_ppc64el.deb ... 1132s Unpacking libdeflate0:ppc64el (1.19-1) ... 1132s Selecting previously unselected package libhtscodecs2:ppc64el. 1132s Preparing to unpack .../01-libhtscodecs2_1.6.0-1_ppc64el.deb ... 1132s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 1132s Selecting previously unselected package libhts3:ppc64el. 1132s Preparing to unpack .../02-libhts3_1.18+ds-1_ppc64el.deb ... 1132s Unpacking libhts3:ppc64el (1.18+ds-1) ... 1132s Selecting previously unselected package python3-pysam. 1132s Preparing to unpack .../03-python3-pysam_0.22.0+ds-1_ppc64el.deb ... 1132s Unpacking python3-pysam (0.22.0+ds-1) ... 1132s Selecting previously unselected package bamkit. 1132s Preparing to unpack .../04-bamkit_0.0.1+git20170413.ccd079d-3_all.deb ... 1132s Unpacking bamkit (0.0.1+git20170413.ccd079d-3) ... 1132s Selecting previously unselected package libbamtools2.5.2:ppc64el. 1132s Preparing to unpack .../05-libbamtools2.5.2_2.5.2+dfsg-4_ppc64el.deb ... 1132s Unpacking libbamtools2.5.2:ppc64el (2.5.2+dfsg-4) ... 1132s Selecting previously unselected package libblas3:ppc64el. 1132s Preparing to unpack .../06-libblas3_3.12.0-3_ppc64el.deb ... 1132s Unpacking libblas3:ppc64el (3.12.0-3) ... 1132s Selecting previously unselected package libgfortran5:ppc64el. 1132s Preparing to unpack .../07-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 1132s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 1133s Selecting previously unselected package libgzstream0:ppc64el. 1133s Preparing to unpack .../08-libgzstream0_1.5+git20171107.9a20658-1_ppc64el.deb ... 1133s Unpacking libgzstream0:ppc64el (1.5+git20171107.9a20658-1) ... 1133s Selecting previously unselected package liblapack3:ppc64el. 1133s Preparing to unpack .../09-liblapack3_3.12.0-3_ppc64el.deb ... 1133s Unpacking liblapack3:ppc64el (3.12.0-3) ... 1133s Selecting previously unselected package samblaster. 1133s Preparing to unpack .../10-samblaster_0.1.26-4_ppc64el.deb ... 1133s Unpacking samblaster (0.1.26-4) ... 1133s Selecting previously unselected package samtools. 1133s Preparing to unpack .../11-samtools_1.19.2-1_ppc64el.deb ... 1133s Unpacking samtools (1.19.2-1) ... 1133s Selecting previously unselected package python3-numpy. 1133s Preparing to unpack .../12-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 1133s Unpacking python3-numpy (1:1.24.2-2) ... 1133s Selecting previously unselected package lumpy-sv. 1133s Preparing to unpack .../13-lumpy-sv_0.3.1+dfsg-7build1_ppc64el.deb ... 1133s Unpacking lumpy-sv (0.3.1+dfsg-7build1) ... 1133s Selecting previously unselected package lumpy-sv-examples. 1133s Preparing to unpack .../14-lumpy-sv-examples_0.3.1+dfsg-7build1_all.deb ... 1133s Unpacking lumpy-sv-examples (0.3.1+dfsg-7build1) ... 1133s Selecting previously unselected package autopkgtest-satdep. 1133s Preparing to unpack .../15-1-autopkgtest-satdep.deb ... 1133s Unpacking autopkgtest-satdep (0) ... 1133s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 1133s Setting up samblaster (0.1.26-4) ... 1133s Setting up libdeflate0:ppc64el (1.19-1) ... 1133s Setting up lumpy-sv-examples (0.3.1+dfsg-7build1) ... 1133s Setting up libblas3:ppc64el (3.12.0-3) ... 1133s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 1133s Setting up libbamtools2.5.2:ppc64el (2.5.2+dfsg-4) ... 1134s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 1134s Setting up libgzstream0:ppc64el (1.5+git20171107.9a20658-1) ... 1134s Setting up liblapack3:ppc64el (3.12.0-3) ... 1134s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 1134s Setting up libhts3:ppc64el (1.18+ds-1) ... 1134s Setting up python3-pysam (0.22.0+ds-1) ... 1134s Setting up bamkit (0.0.1+git20170413.ccd079d-3) ... 1134s Setting up samtools (1.19.2-1) ... 1134s Setting up python3-numpy (1:1.24.2-2) ... 1136s Setting up lumpy-sv (0.3.1+dfsg-7build1) ... 1136s Setting up autopkgtest-satdep (0) ... 1136s Processing triggers for man-db (2.12.0-3) ... 1137s Processing triggers for libc-bin (2.39-0ubuntu6) ... 1140s (Reading database ... 71339 files and directories currently installed.) 1140s Removing autopkgtest-satdep (0) ... 1140s autopkgtest [16:06:04]: test run-unit-test: [----------------------- 1141s + cp -a /usr/share/doc/lumpy-sv/examples/data /usr/share/doc/lumpy-sv/examples/lumpy_tests /usr/share/doc/lumpy-sv/examples/test /tmp/autopkgtest.vIkEVf/autopkgtest_tmp 1141s + cd /tmp/autopkgtest.vIkEVf/autopkgtest_tmp 1141s + gunzip -r data lumpy_tests test 1141s + cd test 1141s + sed -i -e 's:\.\./scripts:/usr/share/lumpy-sv/scripts:' -e 's:\.\./bin/lumpy:/usr/bin/lumpy:' bp_pe.sh bp_pe_pl.sh bp_pesr.sh bp_pesr_pl.sh bp_sr.sh functional-test.sh test.sh test_pl.sh 1141s + ./test.sh 1141s Testing lumpy paired-end 1141s Removed 12 outliers with isize >= 850 1141s 549 0 1141s chr10 1000000 1147s Install bedtools to compare result to known deletions 1147s Testing lumpy split-read 1147s chr10 1000000 1147s Install bedtools to compare result to known deletions 1147s Testing lumpy paired-end and split-read 1148s Removed 12 outliers with isize >= 850 1148s 549 0 1148s chr10 1000000 1154s Install bedtools to compare result to known deletions 1154s autopkgtest [16:06:18]: test run-unit-test: -----------------------] 1154s autopkgtest [16:06:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1154s run-unit-test PASS 1155s autopkgtest [16:06:19]: @@@@@@@@@@@@@@@@@@@@ summary 1155s run-unit-test PASS 1187s Creating nova instance adt-noble-ppc64el-lumpy-sv-20240323-154704-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...