0s autopkgtest [18:21:21]: starting date and time: 2024-03-18 18:21:21+0000
  0s autopkgtest [18:21:21]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [18:21:21]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.k24pnier/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:ncbi-blast+,src:mbedtls --apt-upgrade kleborate --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=ncbi-blast+/2.12.0+ds-4build1 mbedtls/2.28.7-1.1ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-14.secgroup --name adt-noble-ppc64el-kleborate-20240318-182121-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/
145s autopkgtest [18:23:46]: testbed dpkg architecture: ppc64el
145s autopkgtest [18:23:46]: testbed apt version: 2.7.12
145s autopkgtest [18:23:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup
146s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
146s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [485 kB]
146s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3720 kB]
147s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.0 kB]
147s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
147s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [643 kB]
147s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
147s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
147s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
147s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4012 kB]
147s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
147s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [48.4 kB]
147s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
150s Fetched 9098 kB in 2s (3926 kB/s)
151s Reading package lists...
153s Reading package lists...
154s Building dependency tree...
154s Reading state information...
154s Calculating upgrade...
154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
154s Reading package lists...
154s Building dependency tree...
154s Reading state information...
155s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
155s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
156s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
156s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
156s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
157s Reading package lists...
157s Reading package lists...
158s Building dependency tree...
158s Reading state information...
158s Calculating upgrade...
158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
158s Reading package lists...
158s Building dependency tree...
158s Reading state information...
158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
161s autopkgtest [18:24:02]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024
161s autopkgtest [18:24:02]: @@@@@@@@@@@@@@@@@@@@ apt-source kleborate
181s Get:1 http://ftpmaster.internal/ubuntu noble/universe kleborate 2.4.1-3 (dsc) [2331 B]
181s Get:2 http://ftpmaster.internal/ubuntu noble/universe kleborate 2.4.1-3 (tar) [91.6 MB]
181s Get:3 http://ftpmaster.internal/ubuntu noble/universe kleborate 2.4.1-3 (diff) [5997 kB]
181s gpgv: Signature made Sun Mar 10 19:05:38 2024 UTC
181s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
181s gpgv:                issuer "emollier@debian.org"
181s gpgv: Can't check signature: No public key
181s dpkg-source: warning: cannot verify inline signature for ./kleborate_2.4.1-3.dsc: no acceptable signature found
184s autopkgtest [18:24:25]: testing package kleborate version 2.4.1-3
195s autopkgtest [18:24:36]: build not needed
587s autopkgtest [18:31:08]: test run-unit-test: preparing testbed
588s Reading package lists...
589s Building dependency tree...
589s Reading state information...
589s Starting pkgProblemResolver with broken count: 0
589s Starting 2 pkgProblemResolver with broken count: 0
589s Done
589s The following additional packages will be installed:
589s   fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono
589s   fonts-urw-base35 kaptive kaptive-data kleborate kleborate-examples libblas3
589s   libcairo2 libcapnp-1.0.1 libdeflate0 libfontconfig1 libfontenc1 libgfortran5
589s   libgomp1 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libimagequant0
589s   libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4
589s   libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libmurmurhash2
589s   libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7
589s   libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 mash
589s   ncbi-blast+ ncbi-data python3-biopython python3-cairo python3-freetype
589s   python3-numpy python3-pil python3-reportlab python3-rlpycairo sgml-base
589s   w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core
589s Suggested packages:
589s   fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre kaptive-example
589s   gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html liblcms2-utils
589s   python3-tk bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3
589s   phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf
589s   python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise
589s   gcc gfortran python3-dev python3-pytest python-pil-doc pdf-viewer
589s   python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm
589s   sgml-base-doc debhelper
589s Recommended packages:
589s   python-biopython-doc python3-olefile
589s The following NEW packages will be installed:
589s   autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-extra
589s   fonts-dejavu-mono fonts-urw-base35 kaptive kaptive-data kleborate
589s   kleborate-examples libblas3 libcairo2 libcapnp-1.0.1 libdeflate0
589s   libfontconfig1 libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libgsl27
589s   libgslcblas0 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
589s   liblapack3 liblcms2-2 liblerc4 libmbedcrypto7t64 libmbedtls14t64
589s   libmbedx509-1t64 libmurmurhash2 libopenjp2-7 libpixman-1-0 libraqm0
589s   libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0
589s   libxcb-shm0 libxrender1 mash ncbi-blast+ ncbi-data python3-biopython
589s   python3-cairo python3-freetype python3-numpy python3-pil python3-reportlab
589s   python3-rlpycairo sgml-base w3c-sgml-lib x11-common xfonts-encodings
589s   xfonts-utils xml-core
589s 0 upgraded, 60 newly installed, 0 to remove and 0 not upgraded.
589s Need to get 73.1 MB/73.1 MB of archives.
589s After this operation, 301 MB of additional disk space will be used.
589s Get:1 /tmp/autopkgtest.sV4DAw/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B]
590s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el sgml-base all 1.31 [11.4 kB]
590s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB]
590s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB]
590s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontenc1 ppc64el 1:1.1.8-1 [15.7 kB]
590s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB]
590s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
590s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el xfonts-utils ppc64el 1:7.7+6build2 [112 kB]
590s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-urw-base35 all 20200910-8 [11.0 MB]
592s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB]
592s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-extra all 2.37-8 [1947 kB]
592s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB]
592s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB]
592s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB]
592s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB]
592s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240303-1ubuntu1 [161 kB]
592s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libimagequant0 ppc64el 2.18.0-1 [42.5 kB]
592s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB]
592s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B]
592s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB]
592s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libopenjp2-7 ppc64el 2.5.0-2 [233 kB]
592s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB]
592s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB]
592s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libraqm0 ppc64el 0.10.1-1 [18.9 kB]
592s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
592s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB]
592s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB]
593s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB]
593s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB]
593s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB]
593s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpdemux2 ppc64el 1.3.2-0.4 [14.4 kB]
593s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebpmux3 ppc64el 1.3.2-0.4 [31.2 kB]
593s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-pil ppc64el 10.2.0-1 [526 kB]
593s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB]
593s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB]
593s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB]
593s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B]
593s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB]
593s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB]
593s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-cairo ppc64el 1.25.1-2 [162 kB]
593s Get:41 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-freetype all 2.4.0-1 [83.1 kB]
593s Get:42 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-rlpycairo all 0.3.0-3 [9130 B]
593s Get:43 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-reportlab all 4.1.0-1 [683 kB]
593s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el xml-core all 0.19 [20.3 kB]
593s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el w3c-sgml-lib all 1.3-3 [280 kB]
593s Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-biopython ppc64el 1.81+dfsg-3 [1738 kB]
593s Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB]
593s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedcrypto7t64 ppc64el 2.28.7-1.1ubuntu1 [264 kB]
593s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedx509-1t64 ppc64el 2.28.7-1.1ubuntu1 [51.8 kB]
593s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libmbedtls14t64 ppc64el 2.28.7-1.1ubuntu1 [90.5 kB]
593s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el ncbi-blast+ ppc64el 2.12.0+ds-4build1 [13.6 MB]
594s Get:52 http://ftpmaster.internal/ubuntu noble/universe ppc64el kaptive all 2.0.8-1 [28.1 kB]
594s Get:53 http://ftpmaster.internal/ubuntu noble/universe ppc64el kaptive-data all 2.0.8-1 [5432 kB]
594s Get:54 http://ftpmaster.internal/ubuntu noble/universe ppc64el libcapnp-1.0.1 ppc64el 1.0.1-3 [1544 kB]
594s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgslcblas0 ppc64el 2.7.1+dfsg-6ubuntu1 [85.3 kB]
594s Get:56 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgsl27 ppc64el 2.7.1+dfsg-6ubuntu1 [1064 kB]
594s Get:57 http://ftpmaster.internal/ubuntu noble/universe ppc64el libmurmurhash2 ppc64el 1.6-1 [6626 B]
594s Get:58 http://ftpmaster.internal/ubuntu noble/universe ppc64el mash ppc64el 2.3+dfsg-6 [159 kB]
594s Get:59 http://ftpmaster.internal/ubuntu noble/universe ppc64el kleborate ppc64el 2.4.1-3 [8743 kB]
594s Get:60 http://ftpmaster.internal/ubuntu noble/universe ppc64el kleborate-examples all 2.4.1-3 [5990 kB]
595s Fetched 73.1 MB in 5s (14.6 MB/s)
595s Selecting previously unselected package sgml-base.
595s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70095 files and directories currently installed.)
595s Preparing to unpack .../00-sgml-base_1.31_all.deb ...
595s Unpacking sgml-base (1.31) ...
595s Selecting previously unselected package fonts-dejavu-mono.
595s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
595s Unpacking fonts-dejavu-mono (2.37-8) ...
595s Selecting previously unselected package fonts-dejavu-core.
595s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
595s Unpacking fonts-dejavu-core (2.37-8) ...
595s Selecting previously unselected package libfontenc1:ppc64el.
595s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1_ppc64el.deb ...
595s Unpacking libfontenc1:ppc64el (1:1.1.8-1) ...
595s Selecting previously unselected package x11-common.
595s Preparing to unpack .../04-x11-common_1%3a7.7+23ubuntu2_all.deb ...
595s Unpacking x11-common (1:7.7+23ubuntu2) ...
595s Selecting previously unselected package xfonts-encodings.
595s Preparing to unpack .../05-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
595s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
595s Selecting previously unselected package xfonts-utils.
595s Preparing to unpack .../06-xfonts-utils_1%3a7.7+6build2_ppc64el.deb ...
595s Unpacking xfonts-utils (1:7.7+6build2) ...
595s Selecting previously unselected package fonts-urw-base35.
595s Preparing to unpack .../07-fonts-urw-base35_20200910-8_all.deb ...
595s Unpacking fonts-urw-base35 (20200910-8) ...
595s Selecting previously unselected package fontconfig-config.
595s Preparing to unpack .../08-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ...
595s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
595s Selecting previously unselected package fonts-dejavu-extra.
595s Preparing to unpack .../09-fonts-dejavu-extra_2.37-8_all.deb ...
595s Unpacking fonts-dejavu-extra (2.37-8) ...
596s Selecting previously unselected package libblas3:ppc64el.
596s Preparing to unpack .../10-libblas3_3.12.0-3_ppc64el.deb ...
596s Unpacking libblas3:ppc64el (3.12.0-3) ...
596s Selecting previously unselected package libgfortran5:ppc64el.
596s Preparing to unpack .../11-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ...
596s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ...
596s Selecting previously unselected package liblapack3:ppc64el.
596s Preparing to unpack .../12-liblapack3_3.12.0-3_ppc64el.deb ...
596s Unpacking liblapack3:ppc64el (3.12.0-3) ...
596s Selecting previously unselected package python3-numpy.
596s Preparing to unpack .../13-python3-numpy_1%3a1.24.2-2_ppc64el.deb ...
596s Unpacking python3-numpy (1:1.24.2-2) ...
596s Selecting previously unselected package libgomp1:ppc64el.
596s Preparing to unpack .../14-libgomp1_14-20240303-1ubuntu1_ppc64el.deb ...
596s Unpacking libgomp1:ppc64el (14-20240303-1ubuntu1) ...
596s Selecting previously unselected package libimagequant0:ppc64el.
596s Preparing to unpack .../15-libimagequant0_2.18.0-1_ppc64el.deb ...
596s Unpacking libimagequant0:ppc64el (2.18.0-1) ...
596s Selecting previously unselected package libjpeg-turbo8:ppc64el.
596s Preparing to unpack .../16-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ...
596s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ...
596s Selecting previously unselected package libjpeg8:ppc64el.
596s Preparing to unpack .../17-libjpeg8_8c-2ubuntu11_ppc64el.deb ...
596s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ...
596s Selecting previously unselected package liblcms2-2:ppc64el.
596s Preparing to unpack .../18-liblcms2-2_2.14-2_ppc64el.deb ...
596s Unpacking liblcms2-2:ppc64el (2.14-2) ...
596s Selecting previously unselected package libopenjp2-7:ppc64el.
596s Preparing to unpack .../19-libopenjp2-7_2.5.0-2_ppc64el.deb ...
596s Unpacking libopenjp2-7:ppc64el (2.5.0-2) ...
596s Selecting previously unselected package libgraphite2-3:ppc64el.
596s Preparing to unpack .../20-libgraphite2-3_1.3.14-2_ppc64el.deb ...
596s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ...
596s Selecting previously unselected package libharfbuzz0b:ppc64el.
596s Preparing to unpack .../21-libharfbuzz0b_8.3.0-2_ppc64el.deb ...
596s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ...
596s Selecting previously unselected package libraqm0:ppc64el.
596s Preparing to unpack .../22-libraqm0_0.10.1-1_ppc64el.deb ...
596s Unpacking libraqm0:ppc64el (0.10.1-1) ...
596s Selecting previously unselected package libdeflate0:ppc64el.
596s Preparing to unpack .../23-libdeflate0_1.19-1_ppc64el.deb ...
596s Unpacking libdeflate0:ppc64el (1.19-1) ...
596s Selecting previously unselected package libjbig0:ppc64el.
596s Preparing to unpack .../24-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ...
596s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ...
596s Selecting previously unselected package liblerc4:ppc64el.
596s Preparing to unpack .../25-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ...
596s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ...
596s Selecting previously unselected package libsharpyuv0:ppc64el.
596s Preparing to unpack .../26-libsharpyuv0_1.3.2-0.4_ppc64el.deb ...
596s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ...
596s Selecting previously unselected package libwebp7:ppc64el.
596s Preparing to unpack .../27-libwebp7_1.3.2-0.4_ppc64el.deb ...
596s Unpacking libwebp7:ppc64el (1.3.2-0.4) ...
596s Selecting previously unselected package libtiff6:ppc64el.
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599s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
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636s Setting up kaptive (2.0.8-1) ...
636s Setting up kleborate (2.4.1-3) ...
637s Setting up autopkgtest-satdep (0) ...
640s (Reading database ... 73802 files and directories currently installed.)
640s Removing autopkgtest-satdep (0) ...
641s autopkgtest [18:32:02]: test run-unit-test: [-----------------------
641s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
641s   warnings.warn(
696s strain	species	ST	virulence_score	Yersiniabactin	YbST	Colibactin	CbST	Aerobactin	AbST	Salmochelin	SmST	RmpADC	RmST	rmpA2	wzi	K_locus
696s Klebs_HS11286	Klebsiella pneumoniae	ST11	1	ybt 9; ICEKp3	15	-	0	-	0	-	0	-	0	-	wzi74	KL103
696s Klebs_Kp1084	Klebsiella pneumoniae	ST23	2	ybt 1; ICEKp10	47	clb 2	37	-	0	-	0	-	0	-	wzi172	KL1
696s MGH78578	Klebsiella pneumoniae	ST38	0	-	0	-	0	-	0	-	0	-	0	-	wzi50	KL15 (KL17,KL51,KL52)
696s NTUH-K2044	Klebsiella pneumoniae	ST23	4	ybt 2; ICEKp1	326	-	0	iuc 1	1	iro 1,iro 3	19,18	rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated)	26-1LV,119	rmpA2_3-47%	wzi1	KL1
696s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
696s   warnings.warn(
781s strain	species	ST	virulence_score	resistance_score	Yersiniabactin	YbST	Colibactin	CbST	Aerobactin	AbST	Salmochelin	SmST	RmpADC	RmST	rmpA2	wzi	K_locus	AGly_acquired	Col_acquired	Fcyn_acquired	Flq_acquired	Gly_acquired	MLS_acquired	Phe_acquired	Rif_acquired	Sul_acquired	Tet_acquired	Tgc_acquired	Tmt_acquired	Bla_acquired	Bla_inhR_acquired	Bla_ESBL_acquired	Bla_ESBL_inhR_acquired	Bla_Carb_acquired	Bla_chr	SHV_mutations	Omp_mutations	Col_mutations	Flq_mutations	truncated_resistance_hits	spurious_resistance_hits
781s Klebs_HS11286	Klebsiella pneumoniae	ST11	1	3	ybt 9; ICEKp3	15	-	0	-	0	-	0	-	0	-	wzi74	KL103	aadA2^;rmtB;strA.v1^;strB.v1	-	-	-	-	-	-	-	sul2	tet(G).v1	-	dfrA12*	TEM-1;TEM-1;TEM-1	-	CTX-M-14;CTX-M-14	-	KPC-2	SHV-11	35Q	OmpK35-40%	PmrB-10%	GyrA-83I;ParC-80I	aac(3)-IId*?-0%	floR.v2*?;sul1?-63%
781s Klebs_Kp1084	Klebsiella pneumoniae	ST23	2	0	ybt 1; ICEKp10	47	clb 2	37	-	0	-	0	-	0	-	wzi172	KL1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	SHV-11^	35Q	-	-	-	-	-
781s MGH78578	Klebsiella pneumoniae	ST38	0	1	-	0	-	0	-	0	-	0	-	0	-	wzi50	KL15 (KL17,KL51,KL52)	aac(6')-Ib'.v1;aadA*;ant(2'')-Ia;aph(3')-Ia;strA.v1;strB.v1	-	-	-	-	-	catA1*;cmlA5	-	sul1;sul2	tet(D)	-	-	TEM-1D.v1^;TEM-1D.v1^	-	SHV-12	-	-	SHV-11^	238S;240K;35Q;35Q	OmpK35-86%	-	GyrA-83Y	OXA-9.v1*-42%	-
781s NTUH-K2044	Klebsiella pneumoniae	ST23	4	0	ybt 2; ICEKp1	326	-	0	iuc 1	1	iro 1,iro 3	19,18	rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated)	26-1LV,119	rmpA2_3-47%	wzi1	KL1	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	SHV-11^	35Q	-	-	-	-	-
782s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module.
782s   warnings.warn(
1493s strain	species	ST	virulence_score	resistance_score	Yersiniabactin	YbST	Colibactin	CbST	Aerobactin	AbST	Salmochelin	SmST	RmpADC	RmST	rmpA2	wzi	K_locus	K_locus_confidence	O_locus	O_locus_confidence	AGly_acquired	Col_acquired	Fcyn_acquired	Flq_acquired	Gly_acquired	MLS_acquired	Phe_acquired	Rif_acquired	Sul_acquired	Tet_acquired	Tgc_acquired	Tmt_acquired	Bla_acquired	Bla_inhR_acquired	Bla_ESBL_acquired	Bla_ESBL_inhR_acquired	Bla_Carb_acquired	Bla_chr	SHV_mutations	Omp_mutations	Col_mutations	Flq_mutations	truncated_resistance_hits	spurious_resistance_hits
1493s Klebs_HS11286	Klebsiella pneumoniae	ST11	1	3	ybt 9; ICEKp3	15	-	0	-	0	-	0	-	0	-	wzi74	KL103	Very high	O1/O2v1	Very high	aadA2^;rmtB;strA.v1^;strB.v1	-	-	-	-	-	-	-	sul2	tet(G).v1	-	dfrA12*	TEM-1;TEM-1;TEM-1	-	CTX-M-14;CTX-M-14	-	KPC-2	SHV-11	35Q	OmpK35-40%	PmrB-10%	GyrA-83I;ParC-80I	aac(3)-IId*?-0%	floR.v2*?;sul1?-63%
1493s Klebs_Kp1084	Klebsiella pneumoniae	ST23	2	0	ybt 1; ICEKp10	47	clb 2	37	-	0	-	0	-	0	-	wzi172	unknown (KL1)	None	O1/O2v2	High	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	SHV-11^	35Q	-	-	-	-	-
1493s MGH78578	Klebsiella pneumoniae	ST38	0	1	-	0	-	0	-	0	-	0	-	0	-	wzi50	KL52	Perfect	OL13	High	aac(6')-Ib'.v1;aadA*;ant(2'')-Ia;aph(3')-Ia;strA.v1;strB.v1	-	-	-	-	-	catA1*;cmlA5	-	sul1;sul2	tet(D)	-	-	TEM-1D.v1^;TEM-1D.v1^	-	SHV-12	-	-	SHV-11^	238S;240K;35Q;35Q	OmpK35-86%	-	GyrA-83Y	OXA-9.v1*-42%	-
1493s NTUH-K2044	Klebsiella pneumoniae	ST23	4	0	ybt 2; ICEKp1	326	-	0	iuc 1	1	iro 1,iro 3	19,18	rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated)	26-1LV,119	rmpA2_3-47%	wzi1	KL1	Perfect	O1/O2v2	Very high	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	SHV-11^	35Q	-	-	-	-	-
1494s autopkgtest [18:46:15]: test run-unit-test: -----------------------]
1494s run-unit-test        PASS
1494s autopkgtest [18:46:15]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
1495s autopkgtest [18:46:16]: @@@@@@@@@@@@@@@@@@@@ summary
1495s run-unit-test        PASS
1517s Creating nova instance adt-noble-ppc64el-kleborate-20240318-182121-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240316.img (UUID 1492b190-05c5-462d-b1de-84bc330afe32)...