0s autopkgtest [15:23:31]: starting date: 2024-03-12 0s autopkgtest [15:23:31]: git checkout: d9c0295 adt_testbed.py: supress warnings from apt using a shell pipeline 0s autopkgtest [15:23:31]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.utelorri/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:perl,src:db5.3,src:gdbm,src:mmdebstrap --apt-upgrade iva --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=perl/5.38.2-3.2 db5.3/5.3.28+dfsg2-5 gdbm/1.23-5.1 mmdebstrap/1.4.3-6' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-17.secgroup --name adt-noble-ppc64el-iva-20240312-152331-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 110s autopkgtest [15:25:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 110s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [2745 kB] 111s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [450 kB] 111s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4812 B] 111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [40.9 kB] 111s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [597 kB] 111s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 111s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 111s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 111s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [3163 kB] 111s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 111s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [51.8 kB] 111s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 114s Fetched 7182 kB in 2s (3641 kB/s) 114s Reading package lists... 119s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 120s The following packages were automatically installed and are no longer required: 120s libgdbm-compat4t64 libperl5.38 lto-disabled-list make perl-modules-5.38 120s Use 'sudo apt autoremove' to remove them. 120s The following packages will be REMOVED: 120s dpkg-dev libdpkg-perl libgdbm-compat4 libgdbm6 perl 120s The following NEW packages will be installed: 120s libgdbm-compat4t64 libgdbm6t64 120s The following packages have been kept back: 120s libperl5.38 120s The following packages will be upgraded: 120s firmware-sof-signed perl-base perl-modules-5.38 120s 3 upgraded, 2 newly installed, 5 to remove and 1 not upgraded. 120s Need to get 8980 kB of archives. 120s After this operation, 4149 kB disk space will be freed. 120s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-base ppc64el 5.38.2-3.2 [1916 kB] 121s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm6t64 ppc64el 1.23-5.1 [41.9 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm-compat4t64 ppc64el 1.23-5.1 [6972 B] 121s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 121s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el firmware-sof-signed all 2023.12.1-1ubuntu1 [3906 kB] 122s Fetched 8980 kB in 1s (7669 kB/s) 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70101 files and directories currently installed.) 122s Removing dpkg-dev (1.22.4ubuntu5) ... 122s Removing libdpkg-perl (1.22.4ubuntu5) ... 122s Removing perl (5.38.2-3) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69520 files and directories currently installed.) 122s Preparing to unpack .../perl-base_5.38.2-3.2_ppc64el.deb ... 122s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 122s Setting up perl-base (5.38.2-3.2) ... 122s dpkg: libgdbm6:ppc64el: dependency problems, but removing anyway as you requested: 122s python3-gdbm:ppc64el depends on libgdbm6 (>= 1.16). 122s man-db depends on libgdbm6 (>= 1.16). 122s libperl5.38:ppc64el depends on libgdbm6 (>= 1.21). 122s libgdbm-compat4:ppc64el depends on libgdbm6 (>= 1.16). 122s 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69520 files and directories currently installed.) 122s Removing libgdbm6:ppc64el (1.23-5) ... 122s Selecting previously unselected package libgdbm6t64:ppc64el. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69515 files and directories currently installed.) 122s Preparing to unpack .../libgdbm6t64_1.23-5.1_ppc64el.deb ... 122s Unpacking libgdbm6t64:ppc64el (1.23-5.1) ... 122s dpkg: libgdbm-compat4:ppc64el: dependency problems, but removing anyway as you requested: 122s libperl5.38:ppc64el depends on libgdbm-compat4 (>= 1.18-3). 122s 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69521 files and directories currently installed.) 122s Removing libgdbm-compat4:ppc64el (1.23-5) ... 122s Selecting previously unselected package libgdbm-compat4t64:ppc64el. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69516 files and directories currently installed.) 122s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_ppc64el.deb ... 122s Unpacking libgdbm-compat4t64:ppc64el (1.23-5.1) ... 122s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... 122s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 123s Preparing to unpack .../firmware-sof-signed_2023.12.1-1ubuntu1_all.deb ... 123s Unpacking firmware-sof-signed (2023.12.1-1ubuntu1) over (2.2.6-1ubuntu4) ... 123s Setting up libgdbm6t64:ppc64el (1.23-5.1) ... 123s Setting up libgdbm-compat4t64:ppc64el (1.23-5.1) ... 123s Setting up firmware-sof-signed (2023.12.1-1ubuntu1) ... 123s Setting up perl-modules-5.38 (5.38.2-3.2) ... 123s Processing triggers for man-db (2.12.0-3) ... 124s Processing triggers for libc-bin (2.39-0ubuntu2) ... 124s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 124s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 125s The following packages will be REMOVED: 125s libgdbm-compat4t64* libperl5.38* lto-disabled-list* make* perl-modules-5.38* 125s 0 upgraded, 0 newly installed, 5 to remove and 0 not upgraded. 125s After this operation, 53.0 MB disk space will be freed. 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69533 files and directories currently installed.) 125s Removing libperl5.38:ppc64el (5.38.2-3) ... 125s Removing libgdbm-compat4t64:ppc64el (1.23-5.1) ... 125s Removing lto-disabled-list (47) ... 125s Removing make (4.3-4.1build1) ... 125s Removing perl-modules-5.38 (5.38.2-3.2) ... 125s Processing triggers for man-db (2.12.0-3) ... 125s Processing triggers for libc-bin (2.39-0ubuntu2) ... 126s sh: Attempting to set up Debian/Ubuntu apt sources automatically 126s sh: Distribution appears to be Ubuntu 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s eatmydata is already the newest version (131-1). 130s dbus is already the newest version (1.14.10-4ubuntu1). 130s dbus set to manually installed. 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1Reading package lists... 130s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 130s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 130s 130s Building dependency tree... 130s Reading state information... 131s rng-tools-debian is already the newest version (2.4). 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s haveged is already the newest version (1.9.14-1ubuntu1). 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s The following additional packages will be installed: 131s libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 lto-disabled-list 131s make perl perl-modules-5.38 131s Suggested packages: 131s debian-keyring gcc | c-compiler git bzr make-doc perl-doc 131s libterm-readline-gnu-perl | libterm-readline-perl-perl 131s libtap-harness-archive-perl 131s Recommended packages: 131s build-essential gcc | c-compiler fakeroot libalgorithm-merge-perl 131s libfile-fcntllock-perl 131s The following packages will be REMOVED: 131s libdb5.3 131s The following NEW packages will be installed: 131s dpkg-dev libdb5.3t64 libdpkg-perl libgdbm-compat4t64 libperl5.38t64 131s lto-disabled-list make perl perl-modules-5.38 132s 0 upgraded, 9 newly installed, 1 to remove and 0 not upgraded. 132s Need to get 7626 kB/10.7 MB of archives. 132s After this operation, 57.2 MB of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-5build1 [868 kB] 132s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libperl5.38t64 ppc64el 5.38.2-3.2 [4957 kB] 132s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl ppc64el 5.38.2-3.2 [231 kB] 132s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libdpkg-perl all 1.22.4ubuntu5 [268 kB] 132s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el make ppc64el 4.3-4.1build1 [211 kB] 132s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el lto-disabled-list all 47 [12.4 kB] 132s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el dpkg-dev all 1.22.4ubuntu5 [1078 kB] 133s Fetched 7626 kB in 1s (8233 kB/s) 133s dpkg: libdb5.3:ppc64el: dependency problems, but removing anyway as you requested: 133s libsasl2-modules-db:ppc64el depends on libdb5.3. 133s libpython3.12-stdlib:ppc64el depends on libdb5.3. 133s libpython3.11-stdlib:ppc64el depends on libdb5.3. 133s libpam-modules:ppc64el depends on libdb5.3. 133s iproute2 depends on libdb5.3. 133s apt-utils depends on libdb5.3. 133s 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67568 files and directories currently installed.) 133s Removing libdb5.3:ppc64el (5.3.28+dfsg2-4) ... 133s Selecting previously unselected package libdb5.3t64:ppc64el. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67562 files and directories currently installed.) 133s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-5build1_ppc64el.deb ... 133s Unpacking libdb5.3t64:ppc64el (5.3.28+dfsg2-5build1) ... 133s Setting up libdb5.3t64:ppc64el (5.3.28+dfsg2-5build1) ... 133s Selecting previously unselected package perl-modules-5.38. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 67568 files and directories currently installed.) 133s Preparing to unpack .../0-perl-modules-5.38_5.38.2-3.2_all.deb ... 133s Unpacking perl-modules-5.38 (5.38.2-3.2) ... 133s Selecting previously unselected package libgdbm-compat4t64:ppc64el. 133s Preparing to unpack .../1-libgdbm-compat4t64_1.23-5.1_ppc64el.deb ... 133s Unpacking libgdbm-compat4t64:ppc64el (1.23-5.1) ... 133s Selecting previously unselected package libperl5.38t64:ppc64el. 133s Preparing to unpack .../2-libperl5.38t64_5.38.2-3.2_ppc64el.deb ... 133s Unpacking libperl5.38t64:ppc64el (5.38.2-3.2) ... 134s Selecting previously unselected package perl. 134s Preparing to unpack .../3-perl_5.38.2-3.2_ppc64el.deb ... 134s Unpacking perl (5.38.2-3.2) ... 134s Selecting previously unselected package libdpkg-perl. 134s Preparing to unpack .../4-libdpkg-perl_1.22.4ubuntu5_all.deb ... 134s Unpacking libdpkg-perl (1.22.4ubuntu5) ... 134s Selecting previously unselected package make. 134s Preparing to unpack .../5-make_4.3-4.1build1_ppc64el.deb ... 134s Unpacking make (4.3-4.1build1) ... 134s Selecting previously unselected package lto-disabled-list. 134s Preparing to unpack .../6-lto-disabled-list_47_all.deb ... 134s Unpacking lto-disabled-list (47) ... 134s Selecting previously unselected package dpkg-dev. 134s Preparing to unpack .../7-dpkg-dev_1.22.4ubuntu5_all.deb ... 134s Unpacking dpkg-dev (1.22.4ubuntu5) ... 134s Setting up lto-disabled-list (47) ... 134s Setting up libgdbm-compat4t64:ppc64el (1.23-5.1) ... 134s Setting up make (4.3-4.1build1) ... 134s Setting up perl-modules-5.38 (5.38.2-3.2) ... 134s Setting up libperl5.38t64:ppc64el (5.38.2-3.2) ... 134s Setting up perl (5.38.2-3.2) ... 134s Setting up libdpkg-perl (1.22.4ubuntu5) ... 134s Setting up dpkg-dev (1.22.4ubuntu5) ... 134s Processing triggers for man-db (2.12.0-3) ... 135s Processing triggers for libc-bin (2.39-0ubuntu2) ... 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s The following packages will be REMOVED: 135s cloud-init* python3-configobj* python3-debconf* 136s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 136s After this operation, 3248 kB disk space will be freed. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70114 files and directories currently installed.) 136s Removing cloud-init (24.1-0ubuntu1) ... 136s Removing python3-configobj (5.0.8-3) ... 136s Removing python3-debconf (1.5.86) ... 136s Processing triggers for man-db (2.12.0-3) ... 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69725 files and directories currently installed.) 137s Purging configuration files for cloud-init (24.1-0ubuntu1) ... 137s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 137s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s linux-generic is already the newest version (6.8.0-11.11+1). 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 139s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 139s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 139s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 139s Hit:5 http://ftpmaster.internal/ubuntu noble-backports InRelease 143s Reading package lists... 143s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 143s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 143s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s Calculating upgrade... 143s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 144s autopkgtest [15:25:55]: rebooting testbed after setup commands that affected boot 182s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 188s autopkgtest [15:26:39]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 188s autopkgtest [15:26:39]: testbed dpkg architecture: ppc64el 189s autopkgtest [15:26:40]: @@@@@@@@@@@@@@@@@@@@ apt-source iva 190s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:1 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:2 and /etc/apt/sources.list.d/ubuntu.sources:1 190s W: Target Packages (main/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target Packages (main/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target CNF (main/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target CNF (main/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target Packages (universe/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target Packages (universe/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target CNF (universe/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target CNF (universe/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target Packages (restricted/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target Packages (restricted/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target CNF (restricted/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target CNF (restricted/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target Packages (multiverse/binary-ppc64el/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target Packages (multiverse/binary-all/Packages) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target CNF (multiverse/cnf/Commands-ppc64el) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 190s W: Target CNF (multiverse/cnf/Commands-all) is configured multiple times in /etc/apt/sources.list:3 and /etc/apt/sources.list.d/ubuntu.sources:2 193s Get:1 http://ftpmaster.internal/ubuntu noble/universe iva 1.0.11+ds-5 (dsc) [2289 B] 193s Get:2 http://ftpmaster.internal/ubuntu noble/universe iva 1.0.11+ds-5 (tar) [8681 kB] 193s Get:3 http://ftpmaster.internal/ubuntu noble/universe iva 1.0.11+ds-5 (diff) [5992 B] 193s gpgv: Signature made Thu Feb 1 12:52:13 2024 UTC 193s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 193s gpgv: issuer "tille@debian.org" 193s gpgv: Can't check signature: No public key 193s dpkg-source: warning: cannot verify inline signature for ./iva_1.0.11+ds-5.dsc: no acceptable signature found 193s autopkgtest [15:26:44]: testing package iva version 1.0.11+ds-5 193s autopkgtest [15:26:44]: build not needed 202s autopkgtest [15:26:53]: test test-example: preparing testbed 204s Reading package lists... 204s Building dependency tree... 204s Reading state information... 205s Correcting dependencies...Starting pkgProblemResolver with broken count: 0 205s Starting 2 pkgProblemResolver with broken count: 0 205s Done 205s Done 205s Starting pkgProblemResolver with broken count: 0 205s Starting 2 pkgProblemResolver with broken count: 0 205s Done 206s The following additional packages will be installed: 206s adwaita-icon-theme at-spi2-common ca-certificates-java default-jre 206s default-jre-headless fastaq fontconfig fontconfig-config fonts-dejavu-core 206s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 206s humanity-icon-theme iva java-common kmc libasound2 libasound2-data 206s libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 206s libbambamc0 libblas3 libcairo2 libcups2 libdatrie1 libdeflate0 206s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1 206s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgif7 libgl1 206s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 206s libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhts3 libhtscodecs2 libjbig0 206s libjbzip2-java libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 206s libllvm17 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 206s libpixman-1-0 libsharpyuv0 libthai-data libthai0 libtiff6 libvulkan1 206s libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 206s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 206s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 206s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 mummer 206s openjdk-21-jre openjdk-21-jre-headless python3-networkx python3-numpy 206s python3-packaging python3-pysam samtools smalt trimmomatic ubuntu-mono 206s x11-common 206s Suggested packages: 206s libasound2-plugins alsa-utils cups-common gvfs liblcms2-utils pcscd 206s libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho 206s fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic python-networkx-doc 206s python3-gdal python3-matplotlib python3-pydot python3-pygraphviz 206s python3-scipy gcc gfortran python3-dev python3-pytest cwltool 206s Recommended packages: 206s librsvg2-common r-base-core bioperl alsa-ucm-conf alsa-topology-conf 206s libgdk-pixbuf2.0-bin libgl1-amber-dri libgail-common libgtk2.0-bin 206s mesa-vulkan-drivers | vulkan-icd libatk-wrapper-java-jni fonts-dejavu-extra 206s The following NEW packages will be installed: 206s adwaita-icon-theme at-spi2-common ca-certificates-java default-jre 206s default-jre-headless fastaq fontconfig fontconfig-config fonts-dejavu-core 206s fonts-dejavu-mono gtk-update-icon-cache hicolor-icon-theme 206s humanity-icon-theme iva java-common kmc libasound2 libasound2-data 206s libatk1.0-0 libavahi-client3 libavahi-common-data libavahi-common3 206s libbambamc0 libblas3 libcairo2 libcups2 libdatrie1 libdeflate0 206s libdrm-amdgpu1 libdrm-nouveau2 libdrm-radeon1 libfontconfig1 206s libgdk-pixbuf-2.0-0 libgdk-pixbuf2.0-common libgfortran5 libgif7 libgl1 206s libgl1-mesa-dri libglapi-mesa libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 206s libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhts3 libhtscodecs2 libjbig0 206s libjbzip2-java libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 206s libllvm17 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpcsclite1 206s libpixman-1-0 libsharpyuv0 libthai-data libthai0 libtiff6 libvulkan1 206s libwebp7 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 206s libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 206s libxcomposite1 libxcursor1 libxdamage1 libxfixes3 libxi6 libxinerama1 206s libxrandr2 libxrender1 libxshmfence1 libxtst6 libxxf86vm1 mummer 206s openjdk-21-jre openjdk-21-jre-headless python3-networkx python3-numpy 206s python3-packaging python3-pysam samtools smalt trimmomatic ubuntu-mono 206s x11-common 206s 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded. 206s 1 not fully installed or removed. 206s Need to get 120 MB of archives. 206s After this operation, 569 MB of additional disk space will be used. 206s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 206s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 206s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 207s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools ppc64el 1.19.2-1 [669 kB] 207s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el fastaq all 3.17.0-6 [47.9 kB] 207s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-networkx all 2.8.8-1ubuntu1 [1468 kB] 208s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 23.2-1 [40.6 kB] 208s Get:8 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pysam ppc64el 0.22.0+ds-1 [5037 kB] 209s Get:9 http://ftpmaster.internal/ubuntu noble/universe ppc64el kmc ppc64el 3.2.4+dfsg-1 [1002 kB] 209s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el mummer ppc64el 3.23+dfsg-8 [714 kB] 209s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el libbambamc0 ppc64el 0.0.50-6 [43.9 kB] 209s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el smalt ppc64el 0.7.6-13 [132 kB] 209s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 209s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 209s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 209s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 210s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el ca-certificates-java all 20240118 [11.6 kB] 210s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el java-common all 0.75+exp1 [6798 B] 210s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-common-data ppc64el 0.8-13ubuntu2 [29.5 kB] 210s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-common3 ppc64el 0.8-13ubuntu2 [25.8 kB] 210s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libavahi-client3 ppc64el 0.8-13ubuntu2 [30.6 kB] 210s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libcups2 ppc64el 2.4.6-0ubuntu3 [344 kB] 210s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el liblcms2-2 ppc64el 2.14-2 [243 kB] 210s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 210s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 210s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 210s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 210s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1ubuntu1 [37.0 kB] 210s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1ubuntu1 [190 kB] 210s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libasound2-data all 1.2.10-3build1 [20.7 kB] 210s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libasound2 ppc64el 1.2.10-3build1 [496 kB] 210s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2 [105 kB] 210s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2 [576 kB] 210s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libpcsclite1 ppc64el 2.0.0-1 [27.9 kB] 210s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el openjdk-21-jre-headless ppc64el 21.0.2+13-2 [45.8 MB] 213s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el default-jre-headless ppc64el 2:1.21-75+exp1 [3102 B] 213s Get:37 http://ftpmaster.internal/ubuntu noble/universe ppc64el iva ppc64el 1.0.11+ds-5 [8582 kB] 213s Get:38 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjbzip2-java all 0.9.1-8 [42.4 kB] 213s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el libgtk2.0-common all 2.24.33-2ubuntu2 [125 kB] 213s Get:40 http://ftpmaster.internal/ubuntu noble/main ppc64el at-spi2-common all 2.50.0-1 [7864 B] 213s Get:41 http://ftpmaster.internal/ubuntu noble/main ppc64el libatk1.0-0 ppc64el 2.50.0-1 [57.8 kB] 213s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1 [300 kB] 213s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB] 213s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B] 213s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1 [23.3 kB] 213s Get:46 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-1 [735 kB] 213s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdk-pixbuf2.0-common all 2.42.10+dfsg-3 [7624 B] 213s Get:48 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 213s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 213s Get:50 http://ftpmaster.internal/ubuntu noble/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4 [28.7 kB] 213s Get:51 http://ftpmaster.internal/ubuntu noble/main ppc64el libwebp7 ppc64el 1.3.2-0.4 [312 kB] 213s Get:52 http://ftpmaster.internal/ubuntu noble/main ppc64el libtiff6 ppc64el 4.5.1+git230720-3ubuntu1 [323 kB] 213s Get:53 http://ftpmaster.internal/ubuntu noble/main ppc64el libgdk-pixbuf-2.0-0 ppc64el 2.42.10+dfsg-3 [186 kB] 213s Get:54 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1ubuntu1 [192 kB] 213s Get:55 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2 [158 kB] 213s Get:56 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3 [25.1 kB] 213s Get:57 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2 [21.4 kB] 213s Get:58 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.51.0+ds-4 [266 kB] 213s Get:59 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.51.0+ds-4 [49.5 kB] 213s Get:60 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.51.0+ds-4 [31.2 kB] 213s Get:61 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcomposite1 ppc64el 1:0.4.5-1build2 [7400 B] 213s Get:62 http://ftpmaster.internal/ubuntu noble/main ppc64el libxfixes3 ppc64el 1:6.0.0-2 [11.6 kB] 213s Get:63 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcursor1 ppc64el 1:1.2.1-1 [26.9 kB] 213s Get:64 http://ftpmaster.internal/ubuntu noble/main ppc64el libxdamage1 ppc64el 1:1.1.6-1 [6320 B] 213s Get:65 http://ftpmaster.internal/ubuntu noble/main ppc64el libxi6 ppc64el 2:1.8.1-1 [37.9 kB] 213s Get:66 http://ftpmaster.internal/ubuntu noble/main ppc64el libxinerama1 ppc64el 2:1.1.4-3 [7658 B] 213s Get:67 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrandr2 ppc64el 2:1.5.2-2 [22.7 kB] 213s Get:68 http://ftpmaster.internal/ubuntu noble/main ppc64el gtk-update-icon-cache ppc64el 3.24.40-2ubuntu1 [53.2 kB] 213s Get:69 http://ftpmaster.internal/ubuntu noble/main ppc64el hicolor-icon-theme all 0.17-2 [9976 B] 213s Get:70 http://ftpmaster.internal/ubuntu noble/main ppc64el humanity-icon-theme all 0.6.16 [1282 kB] 213s Get:71 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-mono all 24.04-0ubuntu1 [151 kB] 213s Get:72 http://ftpmaster.internal/ubuntu noble/main ppc64el adwaita-icon-theme all 46~rc-1 [723 kB] 213s Get:73 http://ftpmaster.internal/ubuntu noble/main ppc64el libgtk2.0-0 ppc64el 2.24.33-2ubuntu2 [2201 kB] 213s Get:74 http://ftpmaster.internal/ubuntu noble/main ppc64el libglvnd0 ppc64el 1.7.0-1 [84.0 kB] 213s Get:75 http://ftpmaster.internal/ubuntu noble/main ppc64el libglapi-mesa ppc64el 24.0.1-1ubuntu1 [41.8 kB] 213s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libx11-xcb1 ppc64el 2:1.8.7-1 [7866 B] 213s Get:77 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-dri2-0 ppc64el 1.15-1 [7444 B] 213s Get:78 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-dri3-0 ppc64el 1.15-1 [7392 B] 213s Get:79 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-glx0 ppc64el 1.15-1 [26.2 kB] 213s Get:80 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-present0 ppc64el 1.15-1 [5814 B] 213s Get:81 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-randr0 ppc64el 1.15-1 [18.9 kB] 213s Get:82 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-sync1 ppc64el 1.15-1 [9720 B] 213s Get:83 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-xfixes0 ppc64el 1.15-1 [10.6 kB] 213s Get:84 http://ftpmaster.internal/ubuntu noble/main ppc64el libxshmfence1 ppc64el 1.3-1build4 [5566 B] 213s Get:85 http://ftpmaster.internal/ubuntu noble/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1build3 [11.8 kB] 213s Get:86 http://ftpmaster.internal/ubuntu noble/main ppc64el libvulkan1 ppc64el 1.3.275.0-1 [176 kB] 213s Get:87 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-amdgpu1 ppc64el 2.4.120-2 [24.5 kB] 213s Get:88 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-nouveau2 ppc64el 2.4.120-2 [21.2 kB] 213s Get:89 http://ftpmaster.internal/ubuntu noble/main ppc64el libdrm-radeon1 ppc64el 2.4.120-2 [30.6 kB] 213s Get:90 http://ftpmaster.internal/ubuntu noble/main ppc64el libllvm17 ppc64el 1:17.0.6-5build1 [27.3 MB] 214s Get:91 http://ftpmaster.internal/ubuntu noble/main ppc64el libgl1-mesa-dri ppc64el 24.0.1-1ubuntu1 [5885 kB] 214s Get:92 http://ftpmaster.internal/ubuntu noble/main ppc64el libglx-mesa0 ppc64el 24.0.1-1ubuntu1 [160 kB] 214s Get:93 http://ftpmaster.internal/ubuntu noble/main ppc64el libglx0 ppc64el 1.7.0-1 [42.1 kB] 214s Get:94 http://ftpmaster.internal/ubuntu noble/main ppc64el libgl1 ppc64el 1.7.0-1 [108 kB] 214s Get:95 http://ftpmaster.internal/ubuntu noble/main ppc64el libgif7 ppc64el 5.2.1-2.5 [39.6 kB] 214s Get:96 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu2 [23.4 kB] 214s Get:97 http://ftpmaster.internal/ubuntu noble/main ppc64el libxtst6 ppc64el 2:1.2.3-1.1 [15.4 kB] 214s Get:98 http://ftpmaster.internal/ubuntu noble/main ppc64el openjdk-21-jre ppc64el 21.0.2+13-2 [253 kB] 214s Get:99 http://ftpmaster.internal/ubuntu noble/main ppc64el default-jre ppc64el 2:1.21-75+exp1 [922 B] 214s Get:100 http://ftpmaster.internal/ubuntu noble/universe ppc64el trimmomatic all 0.39+dfsg-2 [758 kB] 215s Fetched 120 MB in 9s (14.1 MB/s) 215s Selecting previously unselected package libdeflate0:ppc64el. 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69670 files and directories currently installed.) 215s Preparing to unpack .../00-libdeflate0_1.19-1_ppc64el.deb ... 215s Unpacking libdeflate0:ppc64el (1.19-1) ... 215s Selecting previously unselected package libhtscodecs2:ppc64el. 215s Preparing to unpack .../01-libhtscodecs2_1.6.0-1_ppc64el.deb ... 215s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 215s Selecting previously unselected package libhts3:ppc64el. 215s Preparing to unpack .../02-libhts3_1.18+ds-1_ppc64el.deb ... 215s Unpacking libhts3:ppc64el (1.18+ds-1) ... 215s Selecting previously unselected package samtools. 215s Preparing to unpack .../03-samtools_1.19.2-1_ppc64el.deb ... 215s Unpacking samtools (1.19.2-1) ... 215s Selecting previously unselected package fastaq. 215s Preparing to unpack .../04-fastaq_3.17.0-6_all.deb ... 215s Unpacking fastaq (3.17.0-6) ... 215s Selecting previously unselected package python3-networkx. 215s Preparing to unpack .../05-python3-networkx_2.8.8-1ubuntu1_all.deb ... 215s Unpacking python3-networkx (2.8.8-1ubuntu1) ... 216s Selecting previously unselected package python3-packaging. 216s Preparing to unpack .../06-python3-packaging_23.2-1_all.deb ... 216s Unpacking python3-packaging (23.2-1) ... 216s Selecting previously unselected package python3-pysam. 216s Preparing to unpack .../07-python3-pysam_0.22.0+ds-1_ppc64el.deb ... 216s Unpacking python3-pysam (0.22.0+ds-1) ... 216s Selecting previously unselected package kmc. 216s Preparing to unpack .../08-kmc_3.2.4+dfsg-1_ppc64el.deb ... 216s Unpacking kmc (3.2.4+dfsg-1) ... 216s Selecting previously unselected package mummer. 216s Preparing to unpack .../09-mummer_3.23+dfsg-8_ppc64el.deb ... 216s Unpacking mummer (3.23+dfsg-8) ... 216s Selecting previously unselected package libbambamc0:ppc64el. 216s Preparing to unpack .../10-libbambamc0_0.0.50-6_ppc64el.deb ... 216s Unpacking libbambamc0:ppc64el (0.0.50-6) ... 216s Selecting previously unselected package smalt. 216s Preparing to unpack .../11-smalt_0.7.6-13_ppc64el.deb ... 216s Unpacking smalt (0.7.6-13) ... 216s Selecting previously unselected package libblas3:ppc64el. 216s Preparing to unpack .../12-libblas3_3.12.0-3_ppc64el.deb ... 216s Unpacking libblas3:ppc64el (3.12.0-3) ... 216s Selecting previously unselected package libgfortran5:ppc64el. 216s Preparing to unpack .../13-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 216s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package liblapack3:ppc64el. 216s Preparing to unpack .../14-liblapack3_3.12.0-3_ppc64el.deb ... 216s Unpacking liblapack3:ppc64el (3.12.0-3) ... 216s Selecting previously unselected package python3-numpy. 216s Preparing to unpack .../15-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 216s Unpacking python3-numpy (1:1.24.2-2) ... 216s Selecting previously unselected package ca-certificates-java. 216s Preparing to unpack .../16-ca-certificates-java_20240118_all.deb ... 216s Unpacking ca-certificates-java (20240118) ... 216s Selecting previously unselected package java-common. 217s Preparing to unpack .../17-java-common_0.75+exp1_all.deb ... 217s Unpacking java-common (0.75+exp1) ... 217s Selecting previously unselected package libavahi-common-data:ppc64el. 217s Preparing to unpack .../18-libavahi-common-data_0.8-13ubuntu2_ppc64el.deb ... 217s Unpacking libavahi-common-data:ppc64el (0.8-13ubuntu2) ... 217s Selecting previously unselected package libavahi-common3:ppc64el. 217s Preparing to unpack .../19-libavahi-common3_0.8-13ubuntu2_ppc64el.deb ... 217s Unpacking libavahi-common3:ppc64el (0.8-13ubuntu2) ... 217s Selecting previously unselected package libavahi-client3:ppc64el. 217s Preparing to unpack .../20-libavahi-client3_0.8-13ubuntu2_ppc64el.deb ... 217s Unpacking libavahi-client3:ppc64el (0.8-13ubuntu2) ... 217s Selecting previously unselected package libcups2:ppc64el. 217s Preparing to unpack .../21-libcups2_2.4.6-0ubuntu3_ppc64el.deb ... 217s Unpacking libcups2:ppc64el (2.4.6-0ubuntu3) ... 217s Selecting previously unselected package liblcms2-2:ppc64el. 217s Preparing to unpack .../22-liblcms2-2_2.14-2_ppc64el.deb ... 217s Unpacking liblcms2-2:ppc64el (2.14-2) ... 217s Selecting previously unselected package libjpeg-turbo8:ppc64el. 217s Preparing to unpack .../23-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 217s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 217s Selecting previously unselected package libjpeg8:ppc64el. 217s Preparing to unpack .../24-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 217s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 217s Selecting previously unselected package fonts-dejavu-mono. 217s Preparing to unpack .../25-fonts-dejavu-mono_2.37-8_all.deb ... 217s Unpacking fonts-dejavu-mono (2.37-8) ... 217s Selecting previously unselected package fonts-dejavu-core. 217s Preparing to unpack .../26-fonts-dejavu-core_2.37-8_all.deb ... 217s Unpacking fonts-dejavu-core (2.37-8) ... 217s Selecting previously unselected package fontconfig-config. 217s Preparing to unpack .../27-fontconfig-config_2.15.0-1ubuntu1_ppc64el.deb ... 217s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 217s Selecting previously unselected package libfontconfig1:ppc64el. 217s Preparing to unpack .../28-libfontconfig1_2.15.0-1ubuntu1_ppc64el.deb ... 217s Unpacking libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 217s Selecting previously unselected package libasound2-data. 217s Preparing to unpack .../29-libasound2-data_1.2.10-3build1_all.deb ... 217s Unpacking libasound2-data (1.2.10-3build1) ... 217s Selecting previously unselected package libasound2:ppc64el. 217s Preparing to unpack .../30-libasound2_1.2.10-3build1_ppc64el.deb ... 217s Unpacking libasound2:ppc64el (1.2.10-3build1) ... 217s Selecting previously unselected package libgraphite2-3:ppc64el. 217s Preparing to unpack .../31-libgraphite2-3_1.3.14-2_ppc64el.deb ... 217s Unpacking libgraphite2-3:ppc64el (1.3.14-2) ... 217s Selecting previously unselected package libharfbuzz0b:ppc64el. 217s Preparing to unpack .../32-libharfbuzz0b_8.3.0-2_ppc64el.deb ... 217s Unpacking libharfbuzz0b:ppc64el (8.3.0-2) ... 217s Selecting previously unselected package libpcsclite1:ppc64el. 217s Preparing to unpack .../33-libpcsclite1_2.0.0-1_ppc64el.deb ... 217s Unpacking libpcsclite1:ppc64el (2.0.0-1) ... 217s Selecting previously unselected package openjdk-21-jre-headless:ppc64el. 217s Preparing to unpack .../34-openjdk-21-jre-headless_21.0.2+13-2_ppc64el.deb ... 217s Unpacking openjdk-21-jre-headless:ppc64el (21.0.2+13-2) ... 218s Selecting previously unselected package default-jre-headless. 218s Preparing to unpack .../35-default-jre-headless_2%3a1.21-75+exp1_ppc64el.deb ... 218s Unpacking default-jre-headless (2:1.21-75+exp1) ... 219s Selecting previously unselected package iva. 219s Preparing to unpack .../36-iva_1.0.11+ds-5_ppc64el.deb ... 219s Unpacking iva (1.0.11+ds-5) ... 219s Selecting previously unselected package libjbzip2-java. 219s Preparing to unpack .../37-libjbzip2-java_0.9.1-8_all.deb ... 219s Unpacking libjbzip2-java (0.9.1-8) ... 219s Selecting previously unselected package libgtk2.0-common. 219s Preparing to unpack .../38-libgtk2.0-common_2.24.33-2ubuntu2_all.deb ... 219s Unpacking libgtk2.0-common (2.24.33-2ubuntu2) ... 219s Selecting previously unselected package at-spi2-common. 219s Preparing to unpack .../39-at-spi2-common_2.50.0-1_all.deb ... 219s Unpacking at-spi2-common (2.50.0-1) ... 219s Selecting previously unselected package libatk1.0-0:ppc64el. 219s Preparing to unpack .../40-libatk1.0-0_2.50.0-1_ppc64el.deb ... 219s Unpacking libatk1.0-0:ppc64el (2.50.0-1) ... 219s Selecting previously unselected package libpixman-1-0:ppc64el. 219s Preparing to unpack .../41-libpixman-1-0_0.42.2-1_ppc64el.deb ... 219s Unpacking libpixman-1-0:ppc64el (0.42.2-1) ... 219s Selecting previously unselected package libxcb-render0:ppc64el. 219s Preparing to unpack .../42-libxcb-render0_1.15-1_ppc64el.deb ... 219s Unpacking libxcb-render0:ppc64el (1.15-1) ... 219s Selecting previously unselected package libxcb-shm0:ppc64el. 219s Preparing to unpack .../43-libxcb-shm0_1.15-1_ppc64el.deb ... 219s Unpacking libxcb-shm0:ppc64el (1.15-1) ... 219s Selecting previously unselected package libxrender1:ppc64el. 219s Preparing to unpack .../44-libxrender1_1%3a0.9.10-1.1_ppc64el.deb ... 219s Unpacking libxrender1:ppc64el (1:0.9.10-1.1) ... 219s Selecting previously unselected package libcairo2:ppc64el. 219s Preparing to unpack .../45-libcairo2_1.18.0-1_ppc64el.deb ... 219s Unpacking libcairo2:ppc64el (1.18.0-1) ... 219s Selecting previously unselected package libgdk-pixbuf2.0-common. 219s Preparing to unpack .../46-libgdk-pixbuf2.0-common_2.42.10+dfsg-3_all.deb ... 219s Unpacking libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 219s Selecting previously unselected package libjbig0:ppc64el. 219s Preparing to unpack .../47-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 219s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 219s Selecting previously unselected package liblerc4:ppc64el. 219s Preparing to unpack .../48-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 219s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 219s Selecting previously unselected package libsharpyuv0:ppc64el. 219s Preparing to unpack .../49-libsharpyuv0_1.3.2-0.4_ppc64el.deb ... 219s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4) ... 219s Selecting previously unselected package libwebp7:ppc64el. 219s Preparing to unpack .../50-libwebp7_1.3.2-0.4_ppc64el.deb ... 219s Unpacking libwebp7:ppc64el (1.3.2-0.4) ... 219s Selecting previously unselected package libtiff6:ppc64el. 219s Preparing to unpack .../51-libtiff6_4.5.1+git230720-3ubuntu1_ppc64el.deb ... 219s Unpacking libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 219s Selecting previously unselected package libgdk-pixbuf-2.0-0:ppc64el. 219s Preparing to unpack .../52-libgdk-pixbuf-2.0-0_2.42.10+dfsg-3_ppc64el.deb ... 219s Unpacking libgdk-pixbuf-2.0-0:ppc64el (2.42.10+dfsg-3) ... 219s Selecting previously unselected package fontconfig. 219s Preparing to unpack .../53-fontconfig_2.15.0-1ubuntu1_ppc64el.deb ... 219s Unpacking fontconfig (2.15.0-1ubuntu1) ... 219s Selecting previously unselected package libthai-data. 219s Preparing to unpack .../54-libthai-data_0.1.29-2_all.deb ... 219s Unpacking libthai-data (0.1.29-2) ... 219s Selecting previously unselected package libdatrie1:ppc64el. 219s Preparing to unpack .../55-libdatrie1_0.2.13-3_ppc64el.deb ... 219s Unpacking libdatrie1:ppc64el (0.2.13-3) ... 219s Selecting previously unselected package libthai0:ppc64el. 219s Preparing to unpack .../56-libthai0_0.1.29-2_ppc64el.deb ... 219s Unpacking libthai0:ppc64el (0.1.29-2) ... 219s Selecting previously unselected package libpango-1.0-0:ppc64el. 219s Preparing to unpack .../57-libpango-1.0-0_1.51.0+ds-4_ppc64el.deb ... 219s Unpacking libpango-1.0-0:ppc64el (1.51.0+ds-4) ... 219s Selecting previously unselected package libpangoft2-1.0-0:ppc64el. 219s Preparing to unpack .../58-libpangoft2-1.0-0_1.51.0+ds-4_ppc64el.deb ... 219s Unpacking libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ... 219s Selecting previously unselected package libpangocairo-1.0-0:ppc64el. 219s Preparing to unpack .../59-libpangocairo-1.0-0_1.51.0+ds-4_ppc64el.deb ... 219s Unpacking libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ... 219s Selecting previously unselected package libxcomposite1:ppc64el. 219s Preparing to unpack .../60-libxcomposite1_1%3a0.4.5-1build2_ppc64el.deb ... 219s Unpacking libxcomposite1:ppc64el (1:0.4.5-1build2) ... 219s Selecting previously unselected package libxfixes3:ppc64el. 219s Preparing to unpack .../61-libxfixes3_1%3a6.0.0-2_ppc64el.deb ... 219s Unpacking libxfixes3:ppc64el (1:6.0.0-2) ... 219s Selecting previously unselected package libxcursor1:ppc64el. 219s Preparing to unpack .../62-libxcursor1_1%3a1.2.1-1_ppc64el.deb ... 219s Unpacking libxcursor1:ppc64el (1:1.2.1-1) ... 219s Selecting previously unselected package libxdamage1:ppc64el. 219s Preparing to unpack .../63-libxdamage1_1%3a1.1.6-1_ppc64el.deb ... 219s Unpacking libxdamage1:ppc64el (1:1.1.6-1) ... 219s Selecting previously unselected package libxi6:ppc64el. 219s Preparing to unpack .../64-libxi6_2%3a1.8.1-1_ppc64el.deb ... 219s Unpacking libxi6:ppc64el (2:1.8.1-1) ... 219s Selecting previously unselected package libxinerama1:ppc64el. 219s Preparing to unpack .../65-libxinerama1_2%3a1.1.4-3_ppc64el.deb ... 219s Unpacking libxinerama1:ppc64el (2:1.1.4-3) ... 219s Selecting previously unselected package libxrandr2:ppc64el. 219s Preparing to unpack .../66-libxrandr2_2%3a1.5.2-2_ppc64el.deb ... 219s Unpacking libxrandr2:ppc64el (2:1.5.2-2) ... 219s Selecting previously unselected package gtk-update-icon-cache. 219s Preparing to unpack .../67-gtk-update-icon-cache_3.24.40-2ubuntu1_ppc64el.deb ... 219s Unpacking gtk-update-icon-cache (3.24.40-2ubuntu1) ... 219s Selecting previously unselected package hicolor-icon-theme. 219s Preparing to unpack .../68-hicolor-icon-theme_0.17-2_all.deb ... 219s Unpacking hicolor-icon-theme (0.17-2) ... 219s Selecting previously unselected package humanity-icon-theme. 219s Preparing to unpack .../69-humanity-icon-theme_0.6.16_all.deb ... 219s Unpacking humanity-icon-theme (0.6.16) ... 220s Selecting previously unselected package ubuntu-mono. 220s Preparing to unpack .../70-ubuntu-mono_24.04-0ubuntu1_all.deb ... 220s Unpacking ubuntu-mono (24.04-0ubuntu1) ... 220s Selecting previously unselected package adwaita-icon-theme. 220s Preparing to unpack .../71-adwaita-icon-theme_46~rc-1_all.deb ... 220s Unpacking adwaita-icon-theme (46~rc-1) ... 221s Selecting previously unselected package libgtk2.0-0:ppc64el. 221s Preparing to unpack .../72-libgtk2.0-0_2.24.33-2ubuntu2_ppc64el.deb ... 221s Unpacking libgtk2.0-0:ppc64el (2.24.33-2ubuntu2) ... 221s Selecting previously unselected package libglvnd0:ppc64el. 221s Preparing to unpack .../73-libglvnd0_1.7.0-1_ppc64el.deb ... 221s Unpacking libglvnd0:ppc64el (1.7.0-1) ... 221s Selecting previously unselected package libglapi-mesa:ppc64el. 221s Preparing to unpack .../74-libglapi-mesa_24.0.1-1ubuntu1_ppc64el.deb ... 221s Unpacking libglapi-mesa:ppc64el (24.0.1-1ubuntu1) ... 221s Selecting previously unselected package libx11-xcb1:ppc64el. 221s Preparing to unpack .../75-libx11-xcb1_2%3a1.8.7-1_ppc64el.deb ... 221s Unpacking libx11-xcb1:ppc64el (2:1.8.7-1) ... 221s Selecting previously unselected package libxcb-dri2-0:ppc64el. 221s Preparing to unpack .../76-libxcb-dri2-0_1.15-1_ppc64el.deb ... 221s Unpacking libxcb-dri2-0:ppc64el (1.15-1) ... 221s Selecting previously unselected package libxcb-dri3-0:ppc64el. 221s Preparing to unpack .../77-libxcb-dri3-0_1.15-1_ppc64el.deb ... 221s Unpacking libxcb-dri3-0:ppc64el (1.15-1) ... 221s Selecting previously unselected package libxcb-glx0:ppc64el. 221s Preparing to unpack .../78-libxcb-glx0_1.15-1_ppc64el.deb ... 221s Unpacking libxcb-glx0:ppc64el (1.15-1) ... 221s Selecting previously unselected package libxcb-present0:ppc64el. 221s Preparing to unpack .../79-libxcb-present0_1.15-1_ppc64el.deb ... 221s Unpacking libxcb-present0:ppc64el (1.15-1) ... 221s Selecting previously unselected package libxcb-randr0:ppc64el. 221s Preparing to unpack .../80-libxcb-randr0_1.15-1_ppc64el.deb ... 221s Unpacking libxcb-randr0:ppc64el (1.15-1) ... 221s Selecting previously unselected package libxcb-sync1:ppc64el. 221s Preparing to unpack .../81-libxcb-sync1_1.15-1_ppc64el.deb ... 221s Unpacking libxcb-sync1:ppc64el (1.15-1) ... 221s Selecting previously unselected package libxcb-xfixes0:ppc64el. 221s Preparing to unpack .../82-libxcb-xfixes0_1.15-1_ppc64el.deb ... 221s Unpacking libxcb-xfixes0:ppc64el (1.15-1) ... 221s Selecting previously unselected package libxshmfence1:ppc64el. 221s Preparing to unpack .../83-libxshmfence1_1.3-1build4_ppc64el.deb ... 221s Unpacking libxshmfence1:ppc64el (1.3-1build4) ... 221s Selecting previously unselected package libxxf86vm1:ppc64el. 221s Preparing to unpack .../84-libxxf86vm1_1%3a1.1.4-1build3_ppc64el.deb ... 221s Unpacking libxxf86vm1:ppc64el (1:1.1.4-1build3) ... 221s Selecting previously unselected package libvulkan1:ppc64el. 221s Preparing to unpack .../85-libvulkan1_1.3.275.0-1_ppc64el.deb ... 221s Unpacking libvulkan1:ppc64el (1.3.275.0-1) ... 221s Selecting previously unselected package libdrm-amdgpu1:ppc64el. 221s Preparing to unpack .../86-libdrm-amdgpu1_2.4.120-2_ppc64el.deb ... 221s Unpacking libdrm-amdgpu1:ppc64el (2.4.120-2) ... 221s Selecting previously unselected package libdrm-nouveau2:ppc64el. 221s Preparing to unpack .../87-libdrm-nouveau2_2.4.120-2_ppc64el.deb ... 221s Unpacking libdrm-nouveau2:ppc64el (2.4.120-2) ... 221s Selecting previously unselected package libdrm-radeon1:ppc64el. 221s Preparing to unpack .../88-libdrm-radeon1_2.4.120-2_ppc64el.deb ... 221s Unpacking libdrm-radeon1:ppc64el (2.4.120-2) ... 221s Selecting previously unselected package libllvm17:ppc64el. 221s Preparing to unpack .../89-libllvm17_1%3a17.0.6-5build1_ppc64el.deb ... 221s Unpacking libllvm17:ppc64el (1:17.0.6-5build1) ... 222s Selecting previously unselected package libgl1-mesa-dri:ppc64el. 222s Preparing to unpack .../90-libgl1-mesa-dri_24.0.1-1ubuntu1_ppc64el.deb ... 222s Unpacking libgl1-mesa-dri:ppc64el (24.0.1-1ubuntu1) ... 222s Selecting previously unselected package libglx-mesa0:ppc64el. 222s Preparing to unpack .../91-libglx-mesa0_24.0.1-1ubuntu1_ppc64el.deb ... 222s Unpacking libglx-mesa0:ppc64el (24.0.1-1ubuntu1) ... 222s Selecting previously unselected package libglx0:ppc64el. 222s Preparing to unpack .../92-libglx0_1.7.0-1_ppc64el.deb ... 222s Unpacking libglx0:ppc64el (1.7.0-1) ... 222s Selecting previously unselected package libgl1:ppc64el. 222s Preparing to unpack .../93-libgl1_1.7.0-1_ppc64el.deb ... 222s Unpacking libgl1:ppc64el (1.7.0-1) ... 222s Selecting previously unselected package libgif7:ppc64el. 222s Preparing to unpack .../94-libgif7_5.2.1-2.5_ppc64el.deb ... 222s Unpacking libgif7:ppc64el (5.2.1-2.5) ... 222s Selecting previously unselected package x11-common. 222s Preparing to unpack .../95-x11-common_1%3a7.7+23ubuntu2_all.deb ... 222s Unpacking x11-common (1:7.7+23ubuntu2) ... 222s Selecting previously unselected package libxtst6:ppc64el. 222s Preparing to unpack .../96-libxtst6_2%3a1.2.3-1.1_ppc64el.deb ... 222s Unpacking libxtst6:ppc64el (2:1.2.3-1.1) ... 222s Selecting previously unselected package openjdk-21-jre:ppc64el. 222s Preparing to unpack .../97-openjdk-21-jre_21.0.2+13-2_ppc64el.deb ... 222s Unpacking openjdk-21-jre:ppc64el (21.0.2+13-2) ... 222s Selecting previously unselected package default-jre. 222s Preparing to unpack .../98-default-jre_2%3a1.21-75+exp1_ppc64el.deb ... 222s Unpacking default-jre (2:1.21-75+exp1) ... 222s Selecting previously unselected package trimmomatic. 222s Preparing to unpack .../99-trimmomatic_0.39+dfsg-2_all.deb ... 222s Unpacking trimmomatic (0.39+dfsg-2) ... 222s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 222s Setting up libgraphite2-3:ppc64el (1.3.14-2) ... 222s Setting up libxcb-dri3-0:ppc64el (1.15-1) ... 222s Setting up liblcms2-2:ppc64el (2.14-2) ... 222s Setting up libpixman-1-0:ppc64el (0.42.2-1) ... 222s Setting up libsharpyuv0:ppc64el (1.3.2-0.4) ... 222s Setting up libx11-xcb1:ppc64el (2:1.8.7-1) ... 222s Setting up libdrm-nouveau2:ppc64el (2.4.120-2) ... 222s Setting up libxdamage1:ppc64el (1:1.1.6-1) ... 222s Setting up libxcb-xfixes0:ppc64el (1.15-1) ... 222s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 222s Setting up hicolor-icon-theme (0.17-2) ... 222s Setting up libxi6:ppc64el (2:1.8.1-1) ... 222s Setting up java-common (0.75+exp1) ... 222s Setting up libxrender1:ppc64el (1:0.9.10-1.1) ... 222s Setting up libdatrie1:ppc64el (0.2.13-3) ... 222s Setting up libxcb-render0:ppc64el (1.15-1) ... 222s Setting up libdrm-radeon1:ppc64el (2.4.120-2) ... 222s Setting up libglvnd0:ppc64el (1.7.0-1) ... 222s Setting up libxcb-glx0:ppc64el (1.15-1) ... 222s Setting up libgdk-pixbuf2.0-common (2.42.10+dfsg-3) ... 222s Setting up x11-common (1:7.7+23ubuntu2) ... 223s Setting up libdeflate0:ppc64el (1.19-1) ... 223s Setting up libxcb-shm0:ppc64el (1.15-1) ... 223s Setting up python3-networkx (2.8.8-1ubuntu1) ... 224s /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:556: SyntaxWarning: invalid octal escape sequence '\420' 224s "graph [edge [ source u'u\4200' target u'u\4200' ] " 224s /usr/lib/python3/dist-packages/networkx/readwrite/tests/test_gml.py:557: SyntaxWarning: invalid octal escape sequence '\420' 224s + "node [ id u'u\4200' label b ] ]" 224s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ... 224s Setting up libxxf86vm1:ppc64el (1:1.1.4-1build3) ... 224s Setting up libxcb-present0:ppc64el (1.15-1) ... 224s Setting up libasound2-data (1.2.10-3build1) ... 224s Setting up libblas3:ppc64el (3.12.0-3) ... 224s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 224s Setting up python3-packaging (23.2-1) ... 225s Setting up libxfixes3:ppc64el (1:6.0.0-2) ... 225s Setting up libxcb-sync1:ppc64el (1.15-1) ... 225s Setting up libavahi-common-data:ppc64el (0.8-13ubuntu2) ... 225s Setting up libxinerama1:ppc64el (2:1.1.4-3) ... 225s Setting up libbambamc0:ppc64el (0.0.50-6) ... 225s Setting up fonts-dejavu-mono (2.37-8) ... 225s Setting up libxrandr2:ppc64el (2:1.5.2-2) ... 225s Setting up fonts-dejavu-core (2.37-8) ... 225s Setting up libjbzip2-java (0.9.1-8) ... 225s Setting up libpcsclite1:ppc64el (2.0.0-1) ... 225s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 225s Setting up libglapi-mesa:ppc64el (24.0.1-1ubuntu1) ... 225s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 225s Setting up libvulkan1:ppc64el (1.3.275.0-1) ... 225s Setting up libwebp7:ppc64el (1.3.2-0.4) ... 225s Setting up libxcb-dri2-0:ppc64el (1.15-1) ... 225s Setting up libgif7:ppc64el (5.2.1-2.5) ... 225s Setting up libxshmfence1:ppc64el (1.3-1build4) ... 225s Setting up at-spi2-common (2.50.0-1) ... 225s Setting up libxcb-randr0:ppc64el (1.15-1) ... 225s Setting up libasound2:ppc64el (1.2.10-3build1) ... 225s Setting up mummer (3.23+dfsg-8) ... 225s Setting up libharfbuzz0b:ppc64el (8.3.0-2) ... 225s Setting up libthai-data (0.1.29-2) ... 225s Setting up libgtk2.0-common (2.24.33-2ubuntu2) ... 225s Setting up libatk1.0-0:ppc64el (2.50.0-1) ... 225s Setting up ca-certificates-java (20240118) ... 225s No JRE found. Skipping Java certificates setup. 225s Setting up libllvm17:ppc64el (1:17.0.6-5build1) ... 225s Setting up kmc (3.2.4+dfsg-1) ... 225s Setting up libxcomposite1:ppc64el (1:0.4.5-1build2) ... 225s Setting up libdrm-amdgpu1:ppc64el (2.4.120-2) ... 225s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 225s Setting up smalt (0.7.6-13) ... 225s Setting up liblapack3:ppc64el (3.12.0-3) ... 225s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 225s Setting up libhts3:ppc64el (1.18+ds-1) ... 225s Setting up python3-pysam (0.22.0+ds-1) ... 225s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 225s Setting up libxtst6:ppc64el (2:1.2.3-1.1) ... 225s Setting up libxcursor1:ppc64el (1:1.2.1-1) ... 225s Setting up libgl1-mesa-dri:ppc64el (24.0.1-1ubuntu1) ... 225s Setting up libavahi-common3:ppc64el (0.8-13ubuntu2) ... 225s Setting up samtools (1.19.2-1) ... 225s Setting up libthai0:ppc64el (0.1.29-2) ... 225s Setting up python3-numpy (1:1.24.2-2) ... 227s Setting up libtiff6:ppc64el (4.5.1+git230720-3ubuntu1) ... 227s Setting up libgdk-pixbuf-2.0-0:ppc64el (2.42.10+dfsg-3) ... 227s Setting up libfontconfig1:ppc64el (2.15.0-1ubuntu1) ... 227s Setting up libavahi-client3:ppc64el (0.8-13ubuntu2) ... 227s Setting up gtk-update-icon-cache (3.24.40-2ubuntu1) ... 227s Setting up fontconfig (2.15.0-1ubuntu1) ... 229s Regenerating fonts cache... done. 229s Setting up libglx-mesa0:ppc64el (24.0.1-1ubuntu1) ... 229s Setting up libglx0:ppc64el (1.7.0-1) ... 229s Setting up fastaq (3.17.0-6) ... 229s /usr/lib/python3/dist-packages/pyfastaq/sequences.py:37: SyntaxWarning: invalid escape sequence '\s' 229s phylip_regex = re.compile('^\s*[0-9]+\s+[0-9]+$') 229s /usr/lib/python3/dist-packages/pyfastaq/sequences.py:38: SyntaxWarning: invalid escape sequence '\s' 229s gbk_regex = re.compile('^LOCUS\s+\S') 229s Setting up libpango-1.0-0:ppc64el (1.51.0+ds-4) ... 229s Setting up libcairo2:ppc64el (1.18.0-1) ... 229s Setting up libgl1:ppc64el (1.7.0-1) ... 229s Setting up libcups2:ppc64el (2.4.6-0ubuntu3) ... 229s Setting up libpangoft2-1.0-0:ppc64el (1.51.0+ds-4) ... 229s Setting up libpangocairo-1.0-0:ppc64el (1.51.0+ds-4) ... 229s Setting up openjdk-21-jre-headless:ppc64el (21.0.2+13-2) ... 229s update-alternatives: using /usr/lib/jvm/java-21-openjdk-ppc64el/bin/java to provide /usr/bin/java (java) in auto mode 229s update-alternatives: using /usr/lib/jvm/java-21-openjdk-ppc64el/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode 229s update-alternatives: using /usr/lib/jvm/java-21-openjdk-ppc64el/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode 229s update-alternatives: using /usr/lib/jvm/java-21-openjdk-ppc64el/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode 229s update-alternatives: using /usr/lib/jvm/java-21-openjdk-ppc64el/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode 229s Setting up adwaita-icon-theme (46~rc-1) ... 229s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 229s Setting up libgtk2.0-0:ppc64el (2.24.33-2ubuntu2) ... 229s Setting up humanity-icon-theme (0.6.16) ... 230s Setting up ubuntu-mono (24.04-0ubuntu1) ... 230s Processing triggers for man-db (2.12.0-3) ... 231s Processing triggers for libc-bin (2.39-0ubuntu2) ... 231s Processing triggers for ca-certificates-java (20240118) ... 231s Adding debian:ACCVRAIZ1.pem 231s Adding debian:AC_RAIZ_FNMT-RCM.pem 231s Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem 231s Adding debian:ANF_Secure_Server_Root_CA.pem 231s Adding debian:Actalis_Authentication_Root_CA.pem 231s Adding debian:AffirmTrust_Commercial.pem 231s Adding debian:AffirmTrust_Networking.pem 231s Adding debian:AffirmTrust_Premium.pem 231s Adding debian:AffirmTrust_Premium_ECC.pem 231s Adding debian:Amazon_Root_CA_1.pem 231s Adding debian:Amazon_Root_CA_2.pem 231s Adding debian:Amazon_Root_CA_3.pem 231s Adding debian:Amazon_Root_CA_4.pem 231s Adding debian:Atos_TrustedRoot_2011.pem 231s Adding debian:Atos_TrustedRoot_Root_CA_ECC_TLS_2021.pem 231s Adding debian:Atos_TrustedRoot_Root_CA_RSA_TLS_2021.pem 231s Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem 231s Adding debian:BJCA_Global_Root_CA1.pem 231s Adding debian:BJCA_Global_Root_CA2.pem 231s Adding debian:Baltimore_CyberTrust_Root.pem 231s Adding debian:Buypass_Class_2_Root_CA.pem 231s Adding debian:Buypass_Class_3_Root_CA.pem 231s Adding debian:CA_Disig_Root_R2.pem 231s Adding debian:CFCA_EV_ROOT.pem 231s Adding debian:COMODO_Certification_Authority.pem 231s Adding debian:COMODO_ECC_Certification_Authority.pem 231s Adding debian:COMODO_RSA_Certification_Authority.pem 231s Adding debian:Certainly_Root_E1.pem 231s Adding debian:Certainly_Root_R1.pem 231s Adding debian:Certigna.pem 231s Adding debian:Certigna_Root_CA.pem 231s Adding debian:Certum_EC-384_CA.pem 231s Adding debian:Certum_Trusted_Network_CA.pem 231s Adding debian:Certum_Trusted_Network_CA_2.pem 231s Adding debian:Certum_Trusted_Root_CA.pem 231s Adding debian:CommScope_Public_Trust_ECC_Root-01.pem 231s Adding debian:CommScope_Public_Trust_ECC_Root-02.pem 231s Adding debian:CommScope_Public_Trust_RSA_Root-01.pem 231s Adding debian:CommScope_Public_Trust_RSA_Root-02.pem 231s Adding debian:Comodo_AAA_Services_root.pem 231s Adding debian:D-TRUST_BR_Root_CA_1_2020.pem 231s Adding debian:D-TRUST_EV_Root_CA_1_2020.pem 231s Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem 231s Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem 231s Adding debian:DigiCert_Assured_ID_Root_CA.pem 231s Adding debian:DigiCert_Assured_ID_Root_G2.pem 231s Adding debian:DigiCert_Assured_ID_Root_G3.pem 231s Adding debian:DigiCert_Global_Root_CA.pem 231s Adding debian:DigiCert_Global_Root_G2.pem 231s Adding debian:DigiCert_Global_Root_G3.pem 231s Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem 231s Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem 231s Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem 231s Adding debian:DigiCert_Trusted_Root_G4.pem 231s Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem 231s Adding debian:Entrust_Root_Certification_Authority.pem 231s Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem 231s Adding debian:Entrust_Root_Certification_Authority_-_G2.pem 231s Adding debian:Entrust_Root_Certification_Authority_-_G4.pem 231s Adding debian:GDCA_TrustAUTH_R5_ROOT.pem 231s Adding debian:GLOBALTRUST_2020.pem 231s Adding debian:GTS_Root_R1.pem 231s Adding debian:GTS_Root_R2.pem 231s Adding debian:GTS_Root_R3.pem 231s Adding debian:GTS_Root_R4.pem 231s Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem 231s Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem 231s Adding debian:GlobalSign_Root_CA.pem 231s Adding debian:GlobalSign_Root_CA_-_R3.pem 231s Adding debian:GlobalSign_Root_CA_-_R6.pem 231s Adding debian:GlobalSign_Root_E46.pem 231s Adding debian:GlobalSign_Root_R46.pem 231s Adding debian:Go_Daddy_Class_2_CA.pem 231s Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem 231s Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem 231s Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem 231s Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem 231s Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem 231s Adding debian:HiPKI_Root_CA_-_G1.pem 231s Adding debian:Hongkong_Post_Root_CA_3.pem 231s Adding debian:ISRG_Root_X1.pem 231s Adding debian:ISRG_Root_X2.pem 231s Adding debian:IdenTrust_Commercial_Root_CA_1.pem 231s Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem 231s Adding debian:Izenpe.com.pem 231s Adding debian:Microsec_e-Szigno_Root_CA_2009.pem 231s Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem 232s Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem 232s Adding debian:NAVER_Global_Root_Certification_Authority.pem 232s Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem 232s Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem 232s Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem 232s Adding debian:QuoVadis_Root_CA_1_G3.pem 232s Adding debian:QuoVadis_Root_CA_2.pem 232s Adding debian:QuoVadis_Root_CA_2_G3.pem 232s Adding debian:QuoVadis_Root_CA_3.pem 232s Adding debian:QuoVadis_Root_CA_3_G3.pem 232s Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem 232s Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem 232s Adding debian:SSL.com_Root_Certification_Authority_ECC.pem 232s Adding debian:SSL.com_Root_Certification_Authority_RSA.pem 232s Adding debian:SSL.com_TLS_ECC_Root_CA_2022.pem 232s Adding debian:SSL.com_TLS_RSA_Root_CA_2022.pem 232s Adding debian:SZAFIR_ROOT_CA2.pem 232s Adding debian:Sectigo_Public_Server_Authentication_Root_E46.pem 232s Adding debian:Sectigo_Public_Server_Authentication_Root_R46.pem 232s Adding debian:SecureSign_RootCA11.pem 232s Adding debian:SecureTrust_CA.pem 232s Adding debian:Secure_Global_CA.pem 232s Adding debian:Security_Communication_ECC_RootCA1.pem 232s Adding debian:Security_Communication_RootCA2.pem 232s Adding debian:Security_Communication_RootCA3.pem 232s Adding debian:Security_Communication_Root_CA.pem 232s Adding debian:Starfield_Class_2_CA.pem 232s Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem 232s Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem 232s Adding debian:SwissSign_Gold_CA_-_G2.pem 232s Adding debian:SwissSign_Silver_CA_-_G2.pem 232s Adding debian:T-TeleSec_GlobalRoot_Class_2.pem 232s Adding debian:T-TeleSec_GlobalRoot_Class_3.pem 232s Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem 232s Adding debian:TWCA_Global_Root_CA.pem 232s Adding debian:TWCA_Root_Certification_Authority.pem 232s Adding debian:TeliaSonera_Root_CA_v1.pem 232s Adding debian:Telia_Root_CA_v2.pem 232s Adding debian:TrustAsia_Global_Root_CA_G3.pem 232s Adding debian:TrustAsia_Global_Root_CA_G4.pem 232s Adding debian:Trustwave_Global_Certification_Authority.pem 232s Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem 232s Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem 232s Adding debian:TunTrust_Root_CA.pem 232s Adding debian:UCA_Extended_Validation_Root.pem 232s Adding debian:UCA_Global_G2_Root.pem 232s Adding debian:USERTrust_ECC_Certification_Authority.pem 232s Adding debian:USERTrust_RSA_Certification_Authority.pem 232s Adding debian:XRamp_Global_CA_Root.pem 232s Adding debian:certSIGN_ROOT_CA.pem 232s Adding debian:certSIGN_Root_CA_G2.pem 232s Adding debian:e-Szigno_Root_CA_2017.pem 232s Adding debian:ePKI_Root_Certification_Authority.pem 232s Adding debian:emSign_ECC_Root_CA_-_C3.pem 232s Adding debian:emSign_ECC_Root_CA_-_G3.pem 232s Adding debian:emSign_Root_CA_-_C1.pem 232s Adding debian:emSign_Root_CA_-_G1.pem 232s Adding debian:vTrus_ECC_Root_CA.pem 232s Adding debian:vTrus_Root_CA.pem 232s done. 232s Setting up openjdk-21-jre:ppc64el (21.0.2+13-2) ... 232s Setting up default-jre-headless (2:1.21-75+exp1) ... 232s Setting up iva (1.0.11+ds-5) ... 232s /usr/lib/python3/dist-packages/iva/external_progs.py:33: SyntaxWarning: invalid escape sequence '\(' 232s 'kmc': ('kmc', re.compile('^K-Mer Counter \(KMC\) ver\. (.*) \(.*\)$')), 232s /usr/lib/python3/dist-packages/iva/external_progs.py:34: SyntaxWarning: invalid escape sequence '\(' 232s 'kmc_dump': ('kmc_dump', re.compile('^KMC dump ver. (.*) \(.*\)$')), 232s /usr/lib/python3/dist-packages/iva/external_progs.py:37: SyntaxWarning: invalid escape sequence '\(' 232s 'nucmer': ('nucmer --version', re.compile('^NUCmer \(NUCleotide MUMmer\) version (.*)$')), 232s /usr/lib/python3/dist-packages/iva/external_progs.py:38: SyntaxWarning: invalid escape sequence '\(' 232s 'R': ('R --version', re.compile('^R version (.*) \(.*\) --')), 232s /usr/lib/python3/dist-packages/iva/external_progs.py:40: SyntaxWarning: invalid escape sequence '\d' 232s 'samtools': ('samtools', re.compile('(\d+\.\d+[\.\d]*)')), 232s /usr/lib/python3/dist-packages/iva/kraken.py:360: SyntaxWarning: invalid escape sequence '\.' 232s self._genbank2embl(fname, re.sub('\.gbk$', '', fname) + '.embl') 232s /usr/lib/python3/dist-packages/iva/kraken.py:415: SyntaxWarning: invalid escape sequence '\W' 232s return re.sub('\W', '_', s).strip('_') 232s /usr/lib/python3/dist-packages/iva/mapping.py:161: SyntaxWarning: invalid escape sequence '\^' 232s s = re.sub('\^.', '', s) 232s Setting up default-jre (2:1.21-75+exp1) ... 232s Setting up trimmomatic (0.39+dfsg-2) ... 232s Setting up autopkgtest-satdep (0) ... 237s (Reading database ... 86015 files and directories currently installed.) 237s Removing autopkgtest-satdep (0) ... 238s autopkgtest [15:27:29]: test test-example: [----------------------- 254s Running iva in test mode... 254s Copied input test files into here: /tmp/tmp.mWYETyWEgS/test 254s Current working directory: /tmp/tmp.mWYETyWEgS/test 254s Running iva on the test data with the command: 254s /usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out 254s The following command failed with exit code 1 254s /usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out 254s 254s The output was: 254s 254s The following command failed with exit code 1 254s bash run_kmc.sh 254s 254s The output was: 254s 254s Error: std::bad_alloc 254s 254s 254s autopkgtest [15:27:45]: test test-example: -----------------------] 254s autopkgtest [15:27:45]: test test-example: - - - - - - - - - - results - - - - - - - - - - 254s test-example FAIL non-zero exit status 1 255s autopkgtest [15:27:46]: test test-example: - - - - - - - - - - stderr - - - - - - - - - - 255s The following command failed with exit code 1 255s /usr/bin/iva --threads 1 --trimmomatic /usr/share/java/trimmomatic.jar --pcr_primers hiv_pcr_primers.fa -f reads_1.fq.gz -r reads_2.fq.gz iva.out 255s 255s The output was: 255s 255s The following command failed with exit code 1 255s bash run_kmc.sh 255s 255s The output was: 255s 255s Error: std::bad_alloc 255s 255s 255s autopkgtest [15:27:46]: @@@@@@@@@@@@@@@@@@@@ summary 255s test-example FAIL non-zero exit status 1 266s Creating nova instance adt-noble-ppc64el-iva-20240312-152331-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240312.img (UUID 3480163c-4ce0-4d0c-a02d-baea03374866)...