0s autopkgtest [23:48:41]: starting date and time: 2024-04-18 23:48:41+0000 0s autopkgtest [23:48:41]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [23:48:41]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.p_7v9oai/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gsl --apt-upgrade igor --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gsl/2.7.1+dfsg-6ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-13.secgroup --name adt-noble-ppc64el-igor-20240418-234841-juju-7f2275-prod-proposed-migration-environment-2-ec54676e-094d-4668-8150-bb97692f8711 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 203s autopkgtest [23:52:04]: testbed dpkg architecture: ppc64el 203s autopkgtest [23:52:04]: testbed apt version: 2.7.14build2 203s autopkgtest [23:52:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 204s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 205s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B] 205s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [381 kB] 205s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [57.5 kB] 205s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.2 kB] 205s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [112 kB] 205s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 205s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [976 B] 205s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 205s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [587 kB] 205s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 205s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [1004 B] 205s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 208s Fetched 1282 kB in 1s (1170 kB/s) 208s Reading package lists... 210s sh: 4: dhclient: not found 211s Reading package lists... 211s Building dependency tree... 211s Reading state information... 211s Calculating upgrade... 211s The following packages will be upgraded: 211s libkeyutils1 libnuma1 make netcat-openbsd numactl 211s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 211s Need to get 343 kB of archives. 211s After this operation, 16.4 kB disk space will be freed. 211s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libkeyutils1 ppc64el 1.6.3-3build1 [11.0 kB] 211s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el netcat-openbsd ppc64el 1.226-1ubuntu2 [46.2 kB] 211s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libnuma1 ppc64el 2.0.18-1build1 [28.2 kB] 211s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el make ppc64el 4.3-4.1build2 [214 kB] 212s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el numactl ppc64el 2.0.18-1build1 [43.9 kB] 212s Fetched 343 kB in 1s (648 kB/s) 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 212s Preparing to unpack .../libkeyutils1_1.6.3-3build1_ppc64el.deb ... 212s Unpacking libkeyutils1:ppc64el (1.6.3-3build1) over (1.6.3-3) ... 212s Preparing to unpack .../netcat-openbsd_1.226-1ubuntu2_ppc64el.deb ... 212s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ... 212s Preparing to unpack .../libnuma1_2.0.18-1build1_ppc64el.deb ... 212s Unpacking libnuma1:ppc64el (2.0.18-1build1) over (2.0.18-1) ... 212s Preparing to unpack .../make_4.3-4.1build2_ppc64el.deb ... 212s Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ... 212s Preparing to unpack .../numactl_2.0.18-1build1_ppc64el.deb ... 212s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ... 212s Setting up libkeyutils1:ppc64el (1.6.3-3build1) ... 212s Setting up netcat-openbsd (1.226-1ubuntu2) ... 212s Setting up make (4.3-4.1build2) ... 212s Setting up libnuma1:ppc64el (2.0.18-1build1) ... 212s Setting up numactl (2.0.18-1build1) ... 212s Processing triggers for man-db (2.12.0-4build1) ... 213s Processing triggers for libc-bin (2.39-0ubuntu8) ... 213s Reading package lists... 213s Building dependency tree... 213s Reading state information... 214s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 214s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 214s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 214s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 214s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 215s Reading package lists... 215s Reading package lists... 216s Building dependency tree... 216s Reading state information... 216s Calculating upgrade... 216s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 216s Reading package lists... 216s Building dependency tree... 216s Reading state information... 216s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 219s autopkgtest [23:52:20]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr 4 22:47:57 UTC 2024 219s autopkgtest [23:52:20]: @@@@@@@@@@@@@@@@@@@@ apt-source igor 221s Get:1 http://ftpmaster.internal/ubuntu noble/universe igor 1.4.0+dfsg-4 (dsc) [2046 B] 221s Get:2 http://ftpmaster.internal/ubuntu noble/universe igor 1.4.0+dfsg-4 (tar) [1001 kB] 221s Get:3 http://ftpmaster.internal/ubuntu noble/universe igor 1.4.0+dfsg-4 (diff) [5200 B] 222s gpgv: Signature made Sat Nov 5 19:49:36 2022 UTC 222s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 222s gpgv: issuer "tille@debian.org" 222s gpgv: Can't check signature: No public key 222s dpkg-source: warning: cannot verify inline signature for ./igor_1.4.0+dfsg-4.dsc: no acceptable signature found 222s autopkgtest [23:52:23]: testing package igor version 1.4.0+dfsg-4 222s autopkgtest [23:52:23]: build not needed 223s autopkgtest [23:52:24]: test run-unit-test: preparing testbed 224s Reading package lists... 224s Building dependency tree... 224s Reading state information... 224s Starting pkgProblemResolver with broken count: 0 224s Starting 2 pkgProblemResolver with broken count: 0 224s Done 225s The following additional packages will be installed: 225s build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu 225s cpp-powerpc64le-linux-gnu g++ g++-13 g++-13-powerpc64le-linux-gnu 225s g++-powerpc64le-linux-gnu gcc gcc-13 gcc-13-base 225s gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu igor libasan8 225s libatomic1 libblas3 libcc1-0 libgcc-13-dev libgomp1 libgsl27 libgslcblas0 225s libisl23 libitm1 libjemalloc2 liblsan0 libmpc3 libquadmath0 libstdc++-13-dev 225s libtsan2 libubsan1 225s Suggested packages: 225s cpp-doc gcc-13-locales cpp-13-doc gcc-13-doc gcc-multilib manpages-dev 225s autoconf automake libtool flex bison gdb gcc-doc gdb-powerpc64le-linux-gnu 225s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libstdc++-13-doc 225s The following NEW packages will be installed: 225s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-powerpc64le-linux-gnu 225s cpp-powerpc64le-linux-gnu g++ g++-13 g++-13-powerpc64le-linux-gnu 225s g++-powerpc64le-linux-gnu gcc gcc-13 gcc-13-base 225s gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu igor libasan8 225s libatomic1 libblas3 libcc1-0 libgcc-13-dev libgomp1 libgsl27 libgslcblas0 225s libisl23 libitm1 libjemalloc2 liblsan0 libmpc3 libquadmath0 libstdc++-13-dev 225s libtsan2 libubsan1 225s 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. 225s Need to get 60.0 MB/60.0 MB of archives. 225s After this operation, 226 MB of additional disk space will be used. 225s Get:1 /tmp/autopkgtest.huboZF/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 225s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-base ppc64el 13.2.0-23ubuntu4 [49.0 kB] 225s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3build1 [886 kB] 225s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1build1 [62.1 kB] 225s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-23ubuntu4 [10.7 MB] 226s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-13 ppc64el 13.2.0-23ubuntu4 [1038 B] 226s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B] 226s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB] 226s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libcc1-0 ppc64el 14-20240412-0ubuntu1 [48.1 kB] 226s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240412-0ubuntu1 [161 kB] 226s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libitm1 ppc64el 14-20240412-0ubuntu1 [32.4 kB] 226s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libatomic1 ppc64el 14-20240412-0ubuntu1 [10.7 kB] 226s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libasan8 ppc64el 14-20240412-0ubuntu1 [2971 kB] 226s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el liblsan0 ppc64el 14-20240412-0ubuntu1 [1327 kB] 226s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libtsan2 ppc64el 14-20240412-0ubuntu1 [2709 kB] 226s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libubsan1 ppc64el 14-20240412-0ubuntu1 [1196 kB] 226s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el libquadmath0 ppc64el 14-20240412-0ubuntu1 [158 kB] 226s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libgcc-13-dev ppc64el 13.2.0-23ubuntu4 [1580 kB] 226s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-23ubuntu4 [20.6 MB] 227s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-13 ppc64el 13.2.0-23ubuntu4 [482 kB] 227s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B] 227s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B] 227s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libstdc++-13-dev ppc64el 13.2.0-23ubuntu4 [2512 kB] 227s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-23ubuntu4 [12.2 MB] 227s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-13 ppc64el 13.2.0-23ubuntu4 [14.5 kB] 227s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B] 227s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B] 227s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 227s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 227s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgslcblas0 ppc64el 2.7.1+dfsg-6ubuntu2 [86.6 kB] 227s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgsl27 ppc64el 2.7.1+dfsg-6ubuntu2 [1090 kB] 227s Get:32 http://ftpmaster.internal/ubuntu noble/universe ppc64el libjemalloc2 ppc64el 5.3.0-2 [257 kB] 227s Get:33 http://ftpmaster.internal/ubuntu noble/universe ppc64el igor ppc64el 1.4.0+dfsg-4 [583 kB] 227s Fetched 60.0 MB in 2s (24.4 MB/s) 227s Selecting previously unselected package gcc-13-base:ppc64el. 227s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 227s Preparing to unpack .../00-gcc-13-base_13.2.0-23ubuntu4_ppc64el.deb ... 227s Unpacking gcc-13-base:ppc64el (13.2.0-23ubuntu4) ... 227s Selecting previously unselected package libisl23:ppc64el. 227s Preparing to unpack .../01-libisl23_0.26-3build1_ppc64el.deb ... 227s Unpacking libisl23:ppc64el (0.26-3build1) ... 227s Selecting previously unselected package libmpc3:ppc64el. 227s Preparing to unpack .../02-libmpc3_1.3.1-1build1_ppc64el.deb ... 227s Unpacking libmpc3:ppc64el (1.3.1-1build1) ... 227s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu. 227s Preparing to unpack .../03-cpp-13-powerpc64le-linux-gnu_13.2.0-23ubuntu4_ppc64el.deb ... 227s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 228s Selecting previously unselected package cpp-13. 228s Preparing to unpack .../04-cpp-13_13.2.0-23ubuntu4_ppc64el.deb ... 228s Unpacking cpp-13 (13.2.0-23ubuntu4) ... 228s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 228s Preparing to unpack .../05-cpp-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 228s Unpacking cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 228s Selecting previously unselected package cpp. 228s Preparing to unpack .../06-cpp_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 228s Unpacking cpp (4:13.2.0-7ubuntu1) ... 228s Selecting previously unselected package libcc1-0:ppc64el. 228s Preparing to unpack .../07-libcc1-0_14-20240412-0ubuntu1_ppc64el.deb ... 228s Unpacking libcc1-0:ppc64el (14-20240412-0ubuntu1) ... 228s Selecting previously unselected package libgomp1:ppc64el. 228s Preparing to unpack .../08-libgomp1_14-20240412-0ubuntu1_ppc64el.deb ... 228s Unpacking libgomp1:ppc64el (14-20240412-0ubuntu1) ... 228s Selecting previously unselected package libitm1:ppc64el. 228s Preparing to unpack .../09-libitm1_14-20240412-0ubuntu1_ppc64el.deb ... 228s Unpacking libitm1:ppc64el (14-20240412-0ubuntu1) ... 228s Selecting previously unselected package libatomic1:ppc64el. 228s Preparing to unpack .../10-libatomic1_14-20240412-0ubuntu1_ppc64el.deb ... 228s Unpacking libatomic1:ppc64el (14-20240412-0ubuntu1) ... 228s Selecting previously unselected package libasan8:ppc64el. 228s Preparing to unpack .../11-libasan8_14-20240412-0ubuntu1_ppc64el.deb ... 228s Unpacking libasan8:ppc64el (14-20240412-0ubuntu1) ... 228s Selecting previously unselected package liblsan0:ppc64el. 228s Preparing to unpack .../12-liblsan0_14-20240412-0ubuntu1_ppc64el.deb ... 228s Unpacking liblsan0:ppc64el (14-20240412-0ubuntu1) ... 228s Selecting previously unselected package libtsan2:ppc64el. 228s Preparing to unpack .../13-libtsan2_14-20240412-0ubuntu1_ppc64el.deb ... 228s Unpacking libtsan2:ppc64el (14-20240412-0ubuntu1) ... 228s Selecting previously unselected package libubsan1:ppc64el. 228s Preparing to unpack .../14-libubsan1_14-20240412-0ubuntu1_ppc64el.deb ... 228s Unpacking libubsan1:ppc64el (14-20240412-0ubuntu1) ... 228s Selecting previously unselected package libquadmath0:ppc64el. 228s Preparing to unpack .../15-libquadmath0_14-20240412-0ubuntu1_ppc64el.deb ... 228s Unpacking libquadmath0:ppc64el (14-20240412-0ubuntu1) ... 228s Selecting previously unselected package libgcc-13-dev:ppc64el. 228s Preparing to unpack .../16-libgcc-13-dev_13.2.0-23ubuntu4_ppc64el.deb ... 228s Unpacking libgcc-13-dev:ppc64el (13.2.0-23ubuntu4) ... 228s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu. 228s Preparing to unpack .../17-gcc-13-powerpc64le-linux-gnu_13.2.0-23ubuntu4_ppc64el.deb ... 228s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 229s Selecting previously unselected package gcc-13. 229s Preparing to unpack .../18-gcc-13_13.2.0-23ubuntu4_ppc64el.deb ... 229s Unpacking gcc-13 (13.2.0-23ubuntu4) ... 229s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 229s Preparing to unpack .../19-gcc-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 229s Unpacking gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 229s Selecting previously unselected package gcc. 229s Preparing to unpack .../20-gcc_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 229s Unpacking gcc (4:13.2.0-7ubuntu1) ... 229s Selecting previously unselected package libstdc++-13-dev:ppc64el. 229s Preparing to unpack .../21-libstdc++-13-dev_13.2.0-23ubuntu4_ppc64el.deb ... 229s Unpacking libstdc++-13-dev:ppc64el (13.2.0-23ubuntu4) ... 229s Selecting previously unselected package g++-13-powerpc64le-linux-gnu. 229s Preparing to unpack .../22-g++-13-powerpc64le-linux-gnu_13.2.0-23ubuntu4_ppc64el.deb ... 229s Unpacking g++-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 229s Selecting previously unselected package g++-13. 229s Preparing to unpack .../23-g++-13_13.2.0-23ubuntu4_ppc64el.deb ... 229s Unpacking g++-13 (13.2.0-23ubuntu4) ... 229s Selecting previously unselected package g++-powerpc64le-linux-gnu. 229s Preparing to unpack .../24-g++-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 229s Unpacking g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 230s Selecting previously unselected package g++. 230s Preparing to unpack .../25-g++_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 230s Unpacking g++ (4:13.2.0-7ubuntu1) ... 230s Selecting previously unselected package build-essential. 230s Preparing to unpack .../26-build-essential_12.10ubuntu1_ppc64el.deb ... 230s Unpacking build-essential (12.10ubuntu1) ... 230s Selecting previously unselected package libblas3:ppc64el. 230s Preparing to unpack .../27-libblas3_3.12.0-3build1_ppc64el.deb ... 230s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 230s Selecting previously unselected package libgslcblas0:ppc64el. 230s Preparing to unpack .../28-libgslcblas0_2.7.1+dfsg-6ubuntu2_ppc64el.deb ... 230s Unpacking libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ... 230s Selecting previously unselected package libgsl27:ppc64el. 230s Preparing to unpack .../29-libgsl27_2.7.1+dfsg-6ubuntu2_ppc64el.deb ... 230s Unpacking libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ... 230s Selecting previously unselected package libjemalloc2:ppc64el. 230s Preparing to unpack .../30-libjemalloc2_5.3.0-2_ppc64el.deb ... 230s Unpacking libjemalloc2:ppc64el (5.3.0-2) ... 230s Selecting previously unselected package igor. 230s Preparing to unpack .../31-igor_1.4.0+dfsg-4_ppc64el.deb ... 230s Unpacking igor (1.4.0+dfsg-4) ... 230s Selecting previously unselected package autopkgtest-satdep. 230s Preparing to unpack .../32-1-autopkgtest-satdep.deb ... 230s Unpacking autopkgtest-satdep (0) ... 230s Setting up libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ... 230s Setting up libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ... 230s Setting up libjemalloc2:ppc64el (5.3.0-2) ... 230s Setting up libgomp1:ppc64el (14-20240412-0ubuntu1) ... 230s Setting up libblas3:ppc64el (3.12.0-3build1) ... 230s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 230s Setting up gcc-13-base:ppc64el (13.2.0-23ubuntu4) ... 230s Setting up libquadmath0:ppc64el (14-20240412-0ubuntu1) ... 230s Setting up libmpc3:ppc64el (1.3.1-1build1) ... 230s Setting up libatomic1:ppc64el (14-20240412-0ubuntu1) ... 230s Setting up libubsan1:ppc64el (14-20240412-0ubuntu1) ... 230s Setting up libasan8:ppc64el (14-20240412-0ubuntu1) ... 230s Setting up libtsan2:ppc64el (14-20240412-0ubuntu1) ... 230s Setting up libisl23:ppc64el (0.26-3build1) ... 230s Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 230s Setting up libcc1-0:ppc64el (14-20240412-0ubuntu1) ... 230s Setting up liblsan0:ppc64el (14-20240412-0ubuntu1) ... 230s Setting up libitm1:ppc64el (14-20240412-0ubuntu1) ... 230s Setting up cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 230s Setting up cpp-13 (13.2.0-23ubuntu4) ... 230s Setting up igor (1.4.0+dfsg-4) ... 230s Setting up libgcc-13-dev:ppc64el (13.2.0-23ubuntu4) ... 230s Setting up cpp (4:13.2.0-7ubuntu1) ... 230s Setting up libstdc++-13-dev:ppc64el (13.2.0-23ubuntu4) ... 230s Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 230s Setting up gcc-13 (13.2.0-23ubuntu4) ... 230s Setting up g++-13-powerpc64le-linux-gnu (13.2.0-23ubuntu4) ... 230s Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 230s Setting up g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 230s Setting up g++-13 (13.2.0-23ubuntu4) ... 230s Setting up gcc (4:13.2.0-7ubuntu1) ... 230s Setting up g++ (4:13.2.0-7ubuntu1) ... 230s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 230s Setting up build-essential (12.10ubuntu1) ... 230s Setting up autopkgtest-satdep (0) ... 230s Processing triggers for man-db (2.12.0-4build1) ... 230s Processing triggers for libc-bin (2.39-0ubuntu8) ... 233s (Reading database ... 73275 files and directories currently installed.) 233s Removing autopkgtest-satdep (0) ... 233s autopkgtest [23:52:34]: test run-unit-test: [----------------------- 233s Batch name set to: foo_ 233s FASTA extension detected for the input sequence filegenomicDs.fasta 233s genomicJs_all_curated.fasta 233s genomicVs_with_primers.fasta 233s murugan_naive1_noncoding_demo_seqs.txt 233s =================== BEGIN TEST genomicDs.fasta ============================== 233s 233s Working directory set to: "/tmp/igor-test-output.6rsVY7/" 233s Batch name set to: foo_ 233s Species parameter set to: human 233s Chain parameter set to: beta 233s Working directory set to: "/tmp/igor-test-output.6rsVY7/" 233s Performing V alignments.... 234s V_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 234s Performing D alignments.... 234s D_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 234s Performing J alignments.... 234s J_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 234s Performing CDR3 sequence extraction .... 234s Batch name set to: foo_ 234s FASTA extension detected for the input sequence file 234s Working directory set to: "/tmp/igor-test-output.6rsVY7/" 234s Batch name set to: foo_ 234s Species parameter set to: human 234s Chain parameter set to: beta 234s Working directory set to: "/tmp/igor-test-output.6rsVY7/" 234s Performing V alignments.... 234s ==========================PASSED================================ 234s =================== BEGIN TEST genomicJs_all_curated.fasta ============================== 235s V_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 235s Performing D alignments.... 235s D_gene alignments [||||||==========================PASSED================================ 235s =================== BEGIN TEST genomicVs_with_primers.fasta ============================== 235s ||||||||||||||||||||||||||||||||||||||||||||] Done. 235s Performing J alignments.... 235s J_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 235s Performing CDR3 sequence extraction .... 235s Batch name set to: foo_ 235s FASTA extension detected for the input sequence file 235s Working directory set to: "/tmp/igor-test-output.6rsVY7/" 235s Batch name set to: foo_ 235s Species parameter set to: human 235s Chain parameter set to: beta 235s Working directory set to: "/tmp/igor-test-output.6rsVY7/" 235s Performing V alignments.... 293s V_gene alignments [|||||||||||||||||||||||||||| ] 56.17 % V_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 293s Performing D alignments.... 293s D_gene alignments [|||||||||||||||||||||||||||| ] 56.17 % D_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 293s Performing J alignments.... 295s J_gene alignments [|||||||||||||||||||||||||||| ] 56.17 % J_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 295s Performing CDR3 sequence extraction .... 295s Batch name set to: foo_ 295s TXT extension detected for the input sequence file 295s Working directory set to: "/tmp/igor-test-output.6rsVY7/" 295s Batch name set to: foo_ 295s Species parameter set to: human 295s Chain parameter set to: beta 295s Working directory set to: "/tmp/igor-test-output.6rsVY7/" 295s Performing V alignments.... 295s ==========================PASSED================================ 295s =================== BEGIN TEST murugan_naive1_noncoding_demo_seqs.txt ============================== 333s V_gene alignments [|||||||| ] 16.66 % V_gene alignments [|||||||||||||||| ] 33.33 % V_gene alignments [||||||||||||||||||||||||| ] 50.00 % V_gene alignments [||||||||||||||||||||||||||||||||| ] 66.66 % V_gene alignments [||||||||||||||||||||||||||||||||||||||||| ] 83.33 % V_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] 100.0 % V_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 333s Performing D alignments.... 333s D_gene alignments [|||||||| ] 16.66 % D_gene alignments [|||||||||||||||| ] 33.33 % D_gene alignments [||||||||||||||||||||||||| ] 50.00 % D_gene alignments [||||||||||||||||||||||||||||||||| ] 66.66 % D_gene alignments [||||||||||||||||||||||||||||||||||||||||| ] 83.33 % D_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] 100.0 % D_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 333s Performing J alignments.... 334s J_gene alignments [|||||||| ] 16.66 % J_gene alignments [|||||||||||||||| ] 33.33 % J_gene alignments [||||||||||||||||||||||||| ] 50.00 % J_gene alignments [||||||||||||||||||||||||||||||||| ] 66.66 % J_gene alignments [||||||||||||||||||||||||||||||||||||||||| ] 83.33 % J_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] 100.0 % J_gene alignments [||||||||||||||||||||||||||||||||||||||||||||||||||] Done. 334s Performing CDR3 sequence extraction .... 334s ==========================PASSED================================ 334s autopkgtest [23:54:15]: test run-unit-test: -----------------------] 335s run-unit-test PASS 335s autopkgtest [23:54:16]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 335s autopkgtest [23:54:16]: @@@@@@@@@@@@@@@@@@@@ summary 335s run-unit-test PASS 347s Creating nova instance adt-noble-ppc64el-igor-20240418-234841-juju-7f2275-prod-proposed-migration-environment-2-ec54676e-094d-4668-8150-bb97692f8711 from image adt/ubuntu-noble-ppc64el-server-20240418.img (UUID eb57e9e5-70fe-4878-ae85-dd88e864cb24)...