0s autopkgtest [15:27:43]: starting date and time: 2024-03-27 15:27:43+0000 0s autopkgtest [15:27:43]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:27:43]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7ztinpu6/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed --apt-upgrade htslib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=htslib/1.19+ds-1.1build2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-ppc64el-3.secgroup --name adt-noble-ppc64el-htslib-20240327-152743-juju-7f2275-prod-proposed-migration-environment-3-d8ad0338-8b96-44c2-b417-9cbcc705d99d --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 219s autopkgtest [15:31:22]: testbed dpkg architecture: ppc64el 219s autopkgtest [15:31:22]: testbed apt version: 2.7.12 219s autopkgtest [15:31:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup 220s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 220s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 220s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.5 kB] 220s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [8504 B] 220s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3998 kB] 221s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [692 kB] 221s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 221s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 221s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 221s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4210 kB] 221s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 221s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [62.2 kB] 221s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 224s Fetched 9651 kB in 2s (4039 kB/s) 225s Reading package lists... 226s Reading package lists... 227s Building dependency tree... 227s Reading state information... 227s Calculating upgrade... 227s The following packages will be upgraded: 227s binutils binutils-common binutils-powerpc64le-linux-gnu libbinutils 227s libctf-nobfd0 libctf0 libexpat1 libsframe1 227s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 227s Need to get 3734 kB of archives. 227s After this operation, 2048 B disk space will be freed. 227s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libexpat1 ppc64el 2.6.1-2 [101 kB] 227s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libctf0 ppc64el 2.42-4ubuntu1 [112 kB] 227s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libctf-nobfd0 ppc64el 2.42-4ubuntu1 [112 kB] 227s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.42-4ubuntu1 [2473 kB] 228s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libbinutils ppc64el 2.42-4ubuntu1 [699 kB] 228s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils ppc64el 2.42-4ubuntu1 [3078 B] 228s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils-common ppc64el 2.42-4ubuntu1 [217 kB] 228s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libsframe1 ppc64el 2.42-4ubuntu1 [16.0 kB] 228s Fetched 3734 kB in 1s (5013 kB/s) 228s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 228s Preparing to unpack .../0-libexpat1_2.6.1-2_ppc64el.deb ... 228s Unpacking libexpat1:ppc64el (2.6.1-2) over (2.6.0-1) ... 228s Preparing to unpack .../1-libctf0_2.42-4ubuntu1_ppc64el.deb ... 228s Unpacking libctf0:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 228s Preparing to unpack .../2-libctf-nobfd0_2.42-4ubuntu1_ppc64el.deb ... 228s Unpacking libctf-nobfd0:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 228s Preparing to unpack .../3-binutils-powerpc64le-linux-gnu_2.42-4ubuntu1_ppc64el.deb ... 228s Unpacking binutils-powerpc64le-linux-gnu (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 228s Preparing to unpack .../4-libbinutils_2.42-4ubuntu1_ppc64el.deb ... 228s Unpacking libbinutils:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 228s Preparing to unpack .../5-binutils_2.42-4ubuntu1_ppc64el.deb ... 228s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 228s Preparing to unpack .../6-binutils-common_2.42-4ubuntu1_ppc64el.deb ... 228s Unpacking binutils-common:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 228s Preparing to unpack .../7-libsframe1_2.42-4ubuntu1_ppc64el.deb ... 228s Unpacking libsframe1:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 228s Setting up libexpat1:ppc64el (2.6.1-2) ... 228s Setting up binutils-common:ppc64el (2.42-4ubuntu1) ... 228s Setting up libctf-nobfd0:ppc64el (2.42-4ubuntu1) ... 228s Setting up libsframe1:ppc64el (2.42-4ubuntu1) ... 228s Setting up libbinutils:ppc64el (2.42-4ubuntu1) ... 228s Setting up libctf0:ppc64el (2.42-4ubuntu1) ... 228s Setting up binutils-powerpc64le-linux-gnu (2.42-4ubuntu1) ... 228s Setting up binutils (2.42-4ubuntu1) ... 228s Processing triggers for libc-bin (2.39-0ubuntu6) ... 228s Processing triggers for man-db (2.12.0-3) ... 229s Reading package lists... 229s Building dependency tree... 229s Reading state information... 229s 0 upgraded, 0 newly installed, 0 to remove and 240 not upgraded. 230s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 230s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 230s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 230s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 231s Reading package lists... 231s Reading package lists... 232s Building dependency tree... 232s Reading state information... 232s Calculating upgrade... 232s The following packages were automatically installed and are no longer required: 232s libaio1 libnetplan0 python3-distutils python3-lib2to3 232s Use 'sudo apt autoremove' to remove them. 232s The following packages will be REMOVED: 232s libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1 232s libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11 232s libhogweed6 libmagic1 libnettle8 libnpth0 libnvme1 libparted2 libperl5.38 232s libpng16-16 libpsl5 libreadline8 libreiserfscore0 libssl3 libtirpc3 liburcu8 232s libuv1 232s The following NEW packages will be installed: 232s bpfcc-tools bpftrace fontconfig-config fonts-dejavu-core fonts-dejavu-mono 232s ieee-data libaio1t64 libapt-pkg6.0t64 libarchive13t64 libatm1t64 libbpfcc 232s libc-dev-bin libc-devtools libc6-dev libclang-cpp18 libclang1-18 232s libcrypt-dev libcurl3t64-gnutls libcurl4t64 libdb5.3t64 libdeflate0 232s libdw1t64 libelf1t64 libext2fs2t64 libfontconfig1 libgd3 libgdbm-compat4t64 232s libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 232s libjbig0 libjpeg-turbo8 libjpeg8 liblerc4 libllvm18 libmagic1t64 libnetplan1 232s libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64 libperl5.38t64 232s libpng16-16t64 libpsl5t64 libreadline8t64 libreiserfscore0t64 libsharpyuv0 232s libssl3t64 libtiff6 libtirpc3t64 libunwind8 liburcu8t64 libuv1t64 libwebp7 232s libxpm4 linux-headers-6.8.0-20 linux-headers-6.8.0-20-generic 232s linux-image-6.8.0-20-generic linux-libc-dev linux-modules-6.8.0-20-generic 232s linux-modules-extra-6.8.0-20-generic linux-tools-6.8.0-20 232s linux-tools-6.8.0-20-generic linux-tools-common manpages manpages-dev 232s python3-bpfcc python3-netaddr rpcsvc-proto ubuntu-kernel-accessories 232s xdg-user-dirs 232s The following packages will be upgraded: 232s apparmor apt apt-utils base-files bash bc bind9-dnsutils bind9-host 232s bind9-libs bolt bsdextrautils bsdutils btrfs-progs coreutils cryptsetup-bin 232s curl dbus dbus-bin dbus-daemon dbus-session-bus-common 232s dbus-system-bus-common dbus-user-session dhcpcd-base dirmngr dmsetup dpkg 232s dpkg-dev e2fsprogs e2fsprogs-l10n eject fdisk file ftp fwupd gawk 232s gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0 gnupg 232s gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv 232s groff-base grub-common grub-ieee1275 grub-ieee1275-bin grub2-common 232s ibverbs-providers inetutils-telnet info initramfs-tools initramfs-tools-bin 232s initramfs-tools-core install-info iproute2 jq keyboxd kmod kpartx 232s krb5-locales libapparmor1 libaudit-common libaudit1 libblkid1 232s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 232s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 232s libblockdev3 libbpf1 libbrotli1 libcap-ng0 libcom-err2 libcryptsetup12 232s libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl 232s libevent-core-2.1-7 libfdisk1 libfido2-1 libfreetype6 libftdi1-2 libfwupd2 232s libgcc-s1 libgirepository-1.0-1 libglib2.0-data libgssapi-krb5-2 232s libgudev-1.0-0 libgusb2 libibverbs1 libjcat1 libjq1 libjson-glib-1.0-0 232s libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 232s libldap-common libldap2 liblocale-gettext-perl liblzma5 libmagic-mgc 232s libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14 libnsl2 232s libnss-systemd libpam-modules libpam-modules-bin libpam-runtime 232s libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0 232s libpolkit-gobject-1-0 libproc2-0 libprotobuf-c1 libpython3-stdlib 232s libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal 232s libpython3.12-stdlib libqmi-glib5 libqmi-proxy libqrtr-glib0 librtmp1 232s libsasl2-2 libsasl2-modules libsasl2-modules-db libseccomp2 libselinux1 232s libsemanage-common libsemanage2 libslang2 libsmartcols1 libsqlite3-0 libss2 232s libssh-4 libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl 232s libtext-iconv-perl libtirpc-common libudev1 libudisks2-0 libusb-1.0-0 232s libuuid1 libvolume-key1 libxml2 libxmlb2 libxmuu1 linux-generic 232s linux-headers-generic linux-headers-virtual linux-image-generic 232s linux-image-virtual linux-virtual logsave lshw lsof man-db motd-news-config 232s mount mtr-tiny multipath-tools netplan-generator netplan.io openssh-client 232s openssh-server openssh-sftp-server openssl parted perl perl-base 232s perl-modules-5.38 pinentry-curses plymouth plymouth-theme-ubuntu-text procps 232s python-apt-common python3 python3-apt python3-cryptography python3-dbus 232s python3-distutils python3-gdbm python3-gi python3-lib2to3 python3-minimal 232s python3-netplan python3-pkg-resources python3-pyrsistent python3-setuptools 232s python3-typing-extensions python3-yaml python3.11 python3.11-minimal 232s python3.12 python3.12-minimal readline-common rsync rsyslog shared-mime-info 232s sudo systemd systemd-dev systemd-resolved systemd-sysv systemd-timesyncd 232s tcpdump telnet tnftp ubuntu-pro-client ubuntu-pro-client-l10n udev udisks2 232s usb.ids util-linux uuid-runtime vim-common vim-tiny wget xxd xz-utils zlib1g 232s 240 upgraded, 73 newly installed, 28 to remove and 0 not upgraded. 232s Need to get 386 MB of archives. 232s After this operation, 640 MB of additional disk space will be used. 232s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el motd-news-config all 13ubuntu8 [5098 B] 232s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el base-files ppc64el 13ubuntu8 [74.5 kB] 233s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bash ppc64el 5.2.21-2ubuntu3 [977 kB] 233s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bsdutils ppc64el 1:2.39.3-9ubuntu2 [98.3 kB] 233s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el coreutils ppc64el 9.4-3ubuntu3 [1523 kB] 233s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudisks2-0 ppc64el 2.10.1-6 [182 kB] 233s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el udisks2 ppc64el 2.10.1-6 [344 kB] 233s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el shared-mime-info ppc64el 2.4-1build1 [481 kB] 233s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gir1.2-girepository-2.0 ppc64el 1.79.1-1ubuntu6 [24.8 kB] 233s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gir1.2-glib-2.0 ppc64el 2.79.3-3ubuntu5 [182 kB] 233s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgirepository-1.0-1 ppc64el 1.79.1-1ubuntu6 [93.8 kB] 233s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-gi ppc64el 3.47.0-3build1 [261 kB] 233s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-dbus ppc64el 1.3.2-5build2 [107 kB] 233s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnetplan1 ppc64el 1.0-1 [136 kB] 233s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-netplan ppc64el 1.0-1 [21.8 kB] 233s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el netplan-generator ppc64el 1.0-1 [59.2 kB] 233s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools-bin ppc64el 0.142ubuntu23 [21.0 kB] 233s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools-core all 0.142ubuntu23 [50.1 kB] 233s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools all 0.142ubuntu23 [9058 B] 233s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el netplan.io ppc64el 1.0-1 [66.2 kB] 233s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxmlb2 ppc64el 0.3.15-1build1 [82.6 kB] 233s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgpgme11t64 ppc64el 1.18.0-4.1ubuntu3 [173 kB] 233s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libvolume-key1 ppc64el 0.3.12-7build1 [47.9 kB] 233s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqrtr-glib0 ppc64el 1.2.2-1ubuntu3 [18.3 kB] 233s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqmi-glib5 ppc64el 1.35.2-0ubuntu1 [966 kB] 233s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqmi-proxy ppc64el 1.35.2-0ubuntu1 [6208 B] 233s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpolkit-agent-1-0 ppc64el 124-1ubuntu1 [18.8 kB] 233s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpolkit-gobject-1-0 ppc64el 124-1ubuntu1 [52.7 kB] 233s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmm-glib0 ppc64el 1.23.4-0ubuntu1 [282 kB] 233s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmbim-glib4 ppc64el 1.31.2-0ubuntu2 [253 kB] 233s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmbim-proxy ppc64el 1.31.2-0ubuntu2 [6274 B] 233s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjson-glib-1.0-common all 1.8.0-2build1 [4210 B] 233s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjson-glib-1.0-0 ppc64el 1.8.0-2build1 [73.6 kB] 233s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgusb2 ppc64el 0.4.8-1build1 [43.0 kB] 233s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgudev-1.0-0 ppc64el 1:238-3ubuntu2 [15.8 kB] 233s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el tnftp ppc64el 20230507-2build1 [116 kB] 233s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el tcpdump ppc64el 4.99.4-3ubuntu2 [543 kB] 233s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd0 ppc64el 255.4-1ubuntu5 [526 kB] 233s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-dev all 255.4-1ubuntu5 [103 kB] 233s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnss-systemd ppc64el 255.4-1ubuntu5 [208 kB] 233s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudev1 ppc64el 255.4-1ubuntu5 [200 kB] 233s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 233s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd ppc64el 255.4-1ubuntu5 [3771 kB] 234s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el udev ppc64el 255.4-1ubuntu5 [2038 kB] 234s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-sysv ppc64el 255.4-1ubuntu5 [11.9 kB] 234s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-systemd ppc64el 255.4-1ubuntu5 [304 kB] 234s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-timesyncd ppc64el 255.4-1ubuntu5 [37.9 kB] 234s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd-shared ppc64el 255.4-1ubuntu5 [2351 kB] 234s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-resolved ppc64el 255.4-1ubuntu5 [346 kB] 234s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el sudo ppc64el 1.9.15p5-3ubuntu3 [1005 kB] 234s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el rsync ppc64el 3.2.7-1build1 [487 kB] 234s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-cryptography ppc64el 41.0.7-4build2 [860 kB] 234s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 234s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-sftp-server ppc64el 1:9.6p1-3ubuntu11 [43.7 kB] 234s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-client ppc64el 1:9.6p1-3ubuntu11 [1112 kB] 234s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-server ppc64el 1:9.6p1-3ubuntu11 [627 kB] 234s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssh-4 ppc64el 0.10.6-2build1 [234 kB] 234s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-modules ppc64el 2.1.28+dfsg1-5ubuntu1 [83.1 kB] 234s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.12 ppc64el 3.12.2-4build3 [645 kB] 234s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.12-minimal ppc64el 3.12.2-4build3 [2447 kB] 234s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.12-minimal ppc64el 3.12.2-4build3 [836 kB] 234s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-ieee1275 ppc64el 2.12-1ubuntu5 [63.1 kB] 234s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub2-common ppc64el 2.12-1ubuntu5 [752 kB] 234s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-common ppc64el 2.12-1ubuntu5 [2356 kB] 234s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-ieee1275-bin ppc64el 2.12-1ubuntu5 [687 kB] 234s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libparted2t64 ppc64el 3.6-3.1build2 [184 kB] 234s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el parted ppc64el 3.6-3.1build2 [58.9 kB] 234s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.11 ppc64el 3.11.8-1build4 [589 kB] 234s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.11-minimal ppc64el 3.11.8-1build4 [2292 kB] 234s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.11-minimal ppc64el 3.11.8-1build4 [846 kB] 234s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.11-stdlib ppc64el 3.11.8-1build4 [1977 kB] 234s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg-utils ppc64el 2.4.4-2ubuntu15 [123 kB] 234s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg-agent ppc64el 2.4.4-2ubuntu15 [275 kB] 234s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg-wks-client ppc64el 2.4.4-2ubuntu15 [85.0 kB] 234s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg ppc64el 2.4.4-2ubuntu15 [706 kB] 234s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libnpth0t64 ppc64el 1.6-3.1 [8864 B] 234s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgv ppc64el 2.4.4-2ubuntu15 [198 kB] 234s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dirmngr ppc64el 2.4.4-2ubuntu15 [391 kB] 234s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg all 2.4.4-2ubuntu15 [359 kB] 234s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el keyboxd ppc64el 2.4.4-2ubuntu15 [94.3 kB] 234s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgconf ppc64el 2.4.4-2ubuntu15 [115 kB] 234s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgsm ppc64el 2.4.4-2ubuntu15 [292 kB] 234s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libreadline8t64 ppc64el 8.2-4 [182 kB] 234s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gawk ppc64el 1:5.2.1-2build2 [528 kB] 234s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fdisk ppc64el 2.39.3-9ubuntu2 [132 kB] 234s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bc ppc64el 1.07.1-3ubuntu2 [93.2 kB] 234s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.12-stdlib ppc64el 3.12.2-4build3 [2082 kB] 234s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-base ppc64el 5.38.2-3.2 [1916 kB] 235s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 235s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-gdbm ppc64el 3.12.2-3ubuntu1.1 [19.8 kB] 235s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el man-db ppc64el 2.12.0-3build4 [1274 kB] 235s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm6t64 ppc64el 1.23-5.1 [41.9 kB] 235s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm-compat4t64 ppc64el 1.23-5.1 [6972 B] 235s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libperl5.38t64 ppc64el 5.38.2-3.2 [4957 kB] 235s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl ppc64el 5.38.2-3.2 [231 kB] 235s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-6 [875 kB] 235s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-5ubuntu1 [23.4 kB] 235s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-5ubuntu1 [68.0 kB] 235s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnvme1t64 ppc64el 1.8-3 [98.2 kB] 235s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el wget ppc64el 1.21.4-1ubuntu2 [382 kB] 235s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu8 [428 kB] 235s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el curl ppc64el 8.5.0-2ubuntu8 [234 kB] 235s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1 [59.0 kB] 235s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libarchive13t64 ppc64el 3.7.2-1.1ubuntu2 [518 kB] 235s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fwupd ppc64el 1.9.15-2 [4634 kB] 236s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl3t64-gnutls ppc64el 8.5.0-2ubuntu8 [419 kB] 236s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfwupd2 ppc64el 1.9.15-2 [136 kB] 236s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev3 ppc64el 3.1.0-1build1 [55.2 kB] 236s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-utils3 ppc64el 3.1.0-1build1 [20.3 kB] 236s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-swap3 ppc64el 3.1.0-1build1 [8616 B] 236s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-part3 ppc64el 3.1.0-1build1 [17.5 kB] 236s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-nvme3 ppc64el 3.1.0-1build1 [20.1 kB] 236s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-mdraid3 ppc64el 3.1.0-1build1 [14.3 kB] 236s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-loop3 ppc64el 3.1.0-1build1 [7742 B] 236s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B] 236s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el logsave ppc64el 1.47.0-2.4~exp1ubuntu2 [22.9 kB] 236s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libext2fs2t64 ppc64el 1.47.0-2.4~exp1ubuntu2 [270 kB] 236s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el e2fsprogs ppc64el 1.47.0-2.4~exp1ubuntu2 [663 kB] 236s Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libreiserfscore0t64 ppc64el 1:3.6.27-7.1 [92.7 kB] 236s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el btrfs-progs ppc64el 6.6.3-1.1build1 [1352 kB] 236s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-fs3 ppc64el 3.1.0-1build1 [41.2 kB] 236s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-crypto3 ppc64el 3.1.0-1build1 [22.5 kB] 236s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bolt ppc64el 0.9.6-2build1 [171 kB] 236s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-0t64 ppc64el 2.79.3-3ubuntu5 [1773 kB] 236s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjcat1 ppc64el 0.2.0-2build2 [40.0 kB] 236s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libldap2 ppc64el 2.6.7+dfsg-1~exp1ubuntu6 [233 kB] 236s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ubuntu-pro-client-l10n ppc64el 31.2.2 [19.4 kB] 236s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ubuntu-pro-client ppc64el 31.2.2 [215 kB] 236s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-apt ppc64el 2.7.7 [181 kB] 236s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt-utils ppc64el 2.7.14 [226 kB] 236s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapt-pkg6.0t64 ppc64el 2.7.14 [1063 kB] 236s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnettle8t64 ppc64el 3.9.1-2.2 [226 kB] 236s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libhogweed6t64 ppc64el 3.9.1-2.2 [208 kB] 236s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgnutls30t64 ppc64el 3.8.3-1.1ubuntu2 [1154 kB] 236s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt ppc64el 2.7.14 [1401 kB] 236s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build6 [64.4 kB] 236s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblzma5 ppc64el 5.6.0-0.2 [156 kB] 236s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblkid1 ppc64el 2.39.3-9ubuntu2 [155 kB] 236s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el kmod ppc64el 31+20240202-2ubuntu4 [122 kB] 236s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkmod2 ppc64el 31+20240202-2ubuntu4 [64.4 kB] 237s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libselinux1 ppc64el 3.5-2ubuntu1 [101 kB] 237s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libaudit-common all 1:3.1.2-2.1 [5674 B] 237s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcap-ng0 ppc64el 0.8.4-2build1 [16.2 kB] 237s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libaudit1 ppc64el 1:3.1.2-2.1 [52.8 kB] 237s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam0g ppc64el 1.5.3-5ubuntu3 [75.7 kB] 237s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-modules-bin ppc64el 1.5.3-5ubuntu3 [57.9 kB] 237s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-modules ppc64el 1.5.3-5ubuntu3 [320 kB] 237s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB] 237s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB] 237s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-user-session ppc64el 1.14.10-4ubuntu2 [9960 B] 237s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapparmor1 ppc64el 4.0.0-beta3-0ubuntu2 [55.0 kB] 237s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB] 237s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-bin ppc64el 1.14.10-4ubuntu2 [48.1 kB] 237s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus ppc64el 1.14.10-4ubuntu2 [26.9 kB] 237s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-daemon ppc64el 1.14.10-4ubuntu2 [136 kB] 237s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdbus-1-3 ppc64el 1.14.10-4ubuntu2 [244 kB] 237s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.185-3ubuntu2 [182 kB] 237s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libuuid1 ppc64el 2.39.3-9ubuntu2 [39.3 kB] 237s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcryptsetup12 ppc64el 2:2.7.0-1ubuntu2 [376 kB] 237s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfdisk1 ppc64el 2.39.3-9ubuntu2 [171 kB] 237s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libseccomp2 ppc64el 2.5.5-1ubuntu2 [62.5 kB] 237s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el mount ppc64el 2.39.3-9ubuntu2 [125 kB] 237s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmount1 ppc64el 2.39.3-9ubuntu2 [169 kB] 237s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3.1ubuntu1 [72.8 kB] 237s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-minimal ppc64el 3.12.2-0ubuntu1 [27.1 kB] 237s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3 ppc64el 3.12.2-0ubuntu1 [24.1 kB] 237s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libplymouth5 ppc64el 24.004.60-1ubuntu6 [166 kB] 237s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpng16-16t64 ppc64el 1.6.43-3 [242 kB] 237s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbrotli1 ppc64el 1.1.0-2build1 [410 kB] 237s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfreetype6 ppc64el 2.13.2+dfsg-1build2 [545 kB] 237s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsqlite3-0 ppc64el 3.45.1-1ubuntu1 [804 kB] 237s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el pinentry-curses ppc64el 1.2.1-3ubuntu4 [38.7 kB] 237s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-14-base ppc64el 14-20240315-1ubuntu1 [47.0 kB] 237s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-s1 ppc64el 14-20240315-1ubuntu1 [39.2 kB] 237s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++6 ppc64el 14-20240315-1ubuntu1 [897 kB] 237s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python-apt-common all 2.7.7 [19.8 kB] 237s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsmartcols1 ppc64el 2.39.3-9ubuntu2 [79.0 kB] 237s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el readline-common all 8.2-4 [56.4 kB] 237s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bsdextrautils ppc64el 2.39.3-9ubuntu2 [78.6 kB] 237s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el groff-base ppc64el 1.23.0-3build1 [1112 kB] 237s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.2-0ubuntu1 [9798 B] 237s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfido2-1 ppc64el 1.14.0-1build1 [111 kB] 237s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-6ubuntu1 [185 kB] 237s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkrb5-3 ppc64el 1.20.1-6ubuntu1 [432 kB] 237s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkrb5support0 ppc64el 1.20.1-6ubuntu1 [38.5 kB] 237s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libk5crypto3 ppc64el 1.20.1-6ubuntu1 [108 kB] 237s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcom-err2 ppc64el 1.47.0-2.4~exp1ubuntu2 [22.9 kB] 237s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libproc2-0 ppc64el 2:4.0.4-4ubuntu2 [68.8 kB] 237s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el procps ppc64el 2:4.0.4-4ubuntu2 [736 kB] 237s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnghttp2-14 ppc64el 1.59.0-1build1 [89.0 kB] 237s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dpkg ppc64el 1.22.6ubuntu5 [1343 kB] 237s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el util-linux ppc64el 2.39.3-9ubuntu2 [1195 kB] 237s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3ubuntu2 [840 kB] 237s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbpf1 ppc64el 1:1.3.0-2build1 [216 kB] 237s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el iproute2 ppc64el 6.1.0-1ubuntu5 [1384 kB] 238s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libelf1t64 ppc64el 0.190-1.1build2 [69.3 kB] 238s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dhcpcd-base ppc64el 1:10.0.6-1ubuntu2 [276 kB] 238s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el file ppc64el 1:5.45-3 [22.7 kB] 238s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmagic-mgc ppc64el 1:5.45-3 [307 kB] 238s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmagic1t64 ppc64el 1:5.45-3 [106 kB] 238s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc-common all 1.3.4+ds-1.1 [8018 B] 238s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el lsof ppc64el 4.95.0-1build2 [256 kB] 238s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnsl2 ppc64el 1.3.0-3build2 [48.9 kB] 238s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc3t64 ppc64el 1.3.4+ds-1.1 [102 kB] 238s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el multipath-tools ppc64el 0.9.4-5ubuntu6 [341 kB] 238s Get:206 http://ftpmaster.internal/ubuntu noble/main ppc64el liburcu8t64 ppc64el 0.14.0-3.1 [73.6 kB] 238s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-host ppc64el 1:9.18.24-0ubuntu3 [54.5 kB] 238s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-dnsutils ppc64el 1:9.18.24-0ubuntu3 [167 kB] 238s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-libs ppc64el 1:9.18.24-0ubuntu3 [1436 kB] 238s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libuv1t64 ppc64el 1.48.0-1.1 [117 kB] 238s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblocale-gettext-perl ppc64el 1.07-6ubuntu4 [16.1 kB] 238s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el uuid-runtime ppc64el 2.39.3-9ubuntu2 [33.8 kB] 238s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdebconfclient0 ppc64el 0.271ubuntu2 [11.2 kB] 238s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsemanage-common all 3.5-1build4 [10.1 kB] 238s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsemanage2 ppc64el 3.5-1build4 [115 kB] 238s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el install-info ppc64el 7.1-3build1 [64.5 kB] 238s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13-base ppc64el 13.2.0-21ubuntu1 [48.3 kB] 238s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libss2 ppc64el 1.47.0-2.4~exp1ubuntu2 [18.0 kB] 238s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dmsetup ppc64el 2:1.02.185-3ubuntu2 [91.8 kB] 238s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el eject ppc64el 2.39.3-9ubuntu2 [28.2 kB] 238s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el krb5-locales all 1.20.1-6ubuntu1 [13.8 kB] 238s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 238s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libslang2 ppc64el 2.3.3-3build1 [501 kB] 238s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtext-charwidth-perl ppc64el 0.04-11build2 [9506 B] 238s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtext-iconv-perl ppc64el 1.7-8build2 [13.7 kB] 238s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-yaml ppc64el 6.0.1-2build1 [123 kB] 238s Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-setuptools all 68.1.2-2ubuntu1 [396 kB] 238s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] 238s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el rsyslog ppc64el 8.2312.0-3ubuntu7 [629 kB] 238s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el vim-tiny ppc64el 2:9.1.0016-1ubuntu6 [1042 kB] 239s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el vim-common all 2:9.1.0016-1ubuntu6 [385 kB] 239s Get:232 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-user-dirs ppc64el 0.18-1 [20.0 kB] 239s Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el xxd ppc64el 2:9.1.0016-1ubuntu6 [63.7 kB] 239s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apparmor ppc64el 4.0.0-beta3-0ubuntu2 [747 kB] 239s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ftp all 20230507-2build1 [4724 B] 239s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el inetutils-telnet ppc64el 2:2.5-3ubuntu3 [115 kB] 239s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el info ppc64el 7.1-3build1 [188 kB] 239s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libusb-1.0-0 ppc64el 2:1.0.27-1 [64.0 kB] 239s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxmuu1 ppc64el 2:1.1.3-3build1 [9488 B] 239s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el lshw ppc64el 02.19.git.2021.06.19.996aaad9c7-2build2 [334 kB] 239s Get:241 http://ftpmaster.internal/ubuntu noble/main ppc64el manpages all 6.05.01-1 [1340 kB] 239s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el mtr-tiny ppc64el 0.95-1.1build1 [62.8 kB] 239s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el plymouth-theme-ubuntu-text ppc64el 24.004.60-1ubuntu6 [11.1 kB] 239s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el plymouth ppc64el 24.004.60-1ubuntu6 [155 kB] 239s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el telnet all 0.17+2.5-3ubuntu3 [3682 B] 239s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el usb.ids all 2024.03.18-1 [223 kB] 239s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el xz-utils ppc64el 5.6.0-0.2 [281 kB] 239s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libllvm18 ppc64el 1:18.1.2-1ubuntu2 [28.9 MB] 240s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libclang-cpp18 ppc64el 1:18.1.2-1ubuntu2 [14.6 MB] 240s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libbpfcc ppc64el 0.29.1+ds-1ubuntu4 [707 kB] 240s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-bpfcc all 0.29.1+ds-1ubuntu4 [40.2 kB] 240s Get:252 http://ftpmaster.internal/ubuntu noble/main ppc64el ieee-data all 20220827.1 [2113 kB] 240s Get:253 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-netaddr all 0.8.0-2ubuntu1 [319 kB] 240s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el bpfcc-tools all 0.29.1+ds-1ubuntu4 [687 kB] 240s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libclang1-18 ppc64el 1:18.1.2-1ubuntu2 [8725 kB] 240s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdw1t64 ppc64el 0.190-1.1build2 [301 kB] 240s Get:257 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el bpftrace ppc64el 0.20.2-1ubuntu1 [1058 kB] 240s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cryptsetup-bin ppc64el 2:2.7.0-1ubuntu2 [227 kB] 240s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dpkg-dev all 1.22.6ubuntu5 [1074 kB] 241s Get:260 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdpkg-perl all 1.22.6ubuntu5 [269 kB] 241s Get:261 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 241s Get:262 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 241s Get:263 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu1 [37.4 kB] 241s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libprotobuf-c1 ppc64el 1.4.1-1ubuntu3 [25.9 kB] 241s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB] 241s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libibverbs1 ppc64el 50.0-2build1 [74.4 kB] 241s Get:267 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ibverbs-providers ppc64el 50.0-2build1 [420 kB] 241s Get:268 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el jq ppc64el 1.7.1-3 [66.1 kB] 241s Get:269 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjq1 ppc64el 1.7.1-3 [173 kB] 241s Get:270 http://ftpmaster.internal/ubuntu noble/main ppc64el libaio1t64 ppc64el 0.3.113-6 [8188 B] 241s Get:271 http://ftpmaster.internal/ubuntu noble/main ppc64el libatm1t64 ppc64el 1:2.5.1-5.1 [26.9 kB] 241s Get:272 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu6 [21.3 kB] 241s Get:273 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu1 [190 kB] 241s Get:274 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 241s Get:275 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 241s Get:276 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 241s Get:277 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 241s Get:278 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 241s Get:279 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4build2 [28.8 kB] 241s Get:280 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libwebp7 ppc64el 1.3.2-0.4build2 [312 kB] 241s Get:281 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu1 [274 kB] 241s Get:282 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxpm4 ppc64el 1:3.5.17-1build1 [50.2 kB] 241s Get:283 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgd3 ppc64el 2.3.3-9ubuntu3 [162 kB] 241s Get:284 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-devtools ppc64el 2.39-0ubuntu6 [29.6 kB] 241s Get:285 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-libc-dev ppc64el 6.8.0-20.20 [1586 kB] 241s Get:286 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB] 241s Get:287 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB] 241s Get:288 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu6 [2102 kB] 241s Get:289 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libevent-core-2.1-7 ppc64el 2.1.12-stable-9build1 [110 kB] 241s Get:290 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libftdi1-2 ppc64el 1.5-6build4 [32.5 kB] 241s Get:291 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB] 241s Get:292 http://ftpmaster.internal/ubuntu noble/main ppc64el libunwind8 ppc64el 1.6.2-3 [59.9 kB] 241s Get:293 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-modules-6.8.0-20-generic ppc64el 6.8.0-20.20 [31.3 MB] 242s Get:294 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-6.8.0-20-generic ppc64el 6.8.0-20.20 [63.9 MB] 244s Get:295 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-modules-extra-6.8.0-20-generic ppc64el 6.8.0-20.20 [103 MB] 247s Get:296 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-generic ppc64el 6.8.0-20.20+1 [1734 B] 247s Get:297 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-generic ppc64el 6.8.0-20.20+1 [9698 B] 247s Get:298 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-virtual ppc64el 6.8.0-20.20+1 [1686 B] 247s Get:299 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-virtual ppc64el 6.8.0-20.20+1 [9702 B] 247s Get:300 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-virtual ppc64el 6.8.0-20.20+1 [1648 B] 247s Get:301 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB] 247s Get:302 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-6.8.0-20-generic ppc64el 6.8.0-20.20 [3728 kB] 247s Get:303 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-generic ppc64el 6.8.0-20.20+1 [9612 B] 248s Get:304 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-common all 6.8.0-20.20 [437 kB] 248s Get:305 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-6.8.0-20 ppc64el 6.8.0-20.20 [2924 kB] 248s Get:306 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-6.8.0-20-generic ppc64el 6.8.0-20.20 [1730 B] 248s Get:307 http://ftpmaster.internal/ubuntu noble/main ppc64el manpages-dev all 6.05.01-1 [2018 kB] 248s Get:308 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-distutils all 3.12.2-3ubuntu1.1 [133 kB] 248s Get:309 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB] 248s Get:310 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-pyrsistent ppc64el 0.20.0-1build1 [60.4 kB] 248s Get:311 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-typing-extensions all 4.10.0-1 [60.7 kB] 248s Get:312 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-kernel-accessories ppc64el 1.536build1 [10.5 kB] 248s Get:313 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el kpartx ppc64el 0.9.4-5ubuntu6 [34.4 kB] 249s Preconfiguring packages ... 249s Fetched 386 MB in 16s (23.7 MB/s) 249s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 249s Preparing to unpack .../motd-news-config_13ubuntu8_all.deb ... 249s Unpacking motd-news-config (13ubuntu8) over (13ubuntu7) ... 249s Preparing to unpack .../base-files_13ubuntu8_ppc64el.deb ... 249s Unpacking base-files (13ubuntu8) over (13ubuntu7) ... 249s Setting up base-files (13ubuntu8) ... 250s motd-news.service is a disabled or a static unit not running, not starting it. 250s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 250s Preparing to unpack .../bash_5.2.21-2ubuntu3_ppc64el.deb ... 250s Unpacking bash (5.2.21-2ubuntu3) over (5.2.21-2ubuntu2) ... 250s Setting up bash (5.2.21-2ubuntu3) ... 250s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 250s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 250s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_ppc64el.deb ... 250s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ... 250s Setting up bsdutils (1:2.39.3-9ubuntu2) ... 250s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 250s Preparing to unpack .../coreutils_9.4-3ubuntu3_ppc64el.deb ... 250s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ... 250s Setting up coreutils (9.4-3ubuntu3) ... 251s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 251s Preparing to unpack .../00-libudisks2-0_2.10.1-6_ppc64el.deb ... 251s Unpacking libudisks2-0:ppc64el (2.10.1-6) over (2.10.1-1ubuntu2) ... 251s Preparing to unpack .../01-udisks2_2.10.1-6_ppc64el.deb ... 251s Unpacking udisks2 (2.10.1-6) over (2.10.1-1ubuntu2) ... 251s Preparing to unpack .../02-shared-mime-info_2.4-1build1_ppc64el.deb ... 251s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ... 251s Preparing to unpack .../03-gir1.2-girepository-2.0_1.79.1-1ubuntu6_ppc64el.deb ... 251s Unpacking gir1.2-girepository-2.0:ppc64el (1.79.1-1ubuntu6) over (1.79.1-1) ... 251s Preparing to unpack .../04-gir1.2-glib-2.0_2.79.3-3ubuntu5_ppc64el.deb ... 251s Unpacking gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 251s Preparing to unpack .../05-libgirepository-1.0-1_1.79.1-1ubuntu6_ppc64el.deb ... 251s Unpacking libgirepository-1.0-1:ppc64el (1.79.1-1ubuntu6) over (1.79.1-1) ... 251s Preparing to unpack .../06-python3-gi_3.47.0-3build1_ppc64el.deb ... 251s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ... 251s Preparing to unpack .../07-python3-dbus_1.3.2-5build2_ppc64el.deb ... 251s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ... 251s Selecting previously unselected package libnetplan1:ppc64el. 251s Preparing to unpack .../08-libnetplan1_1.0-1_ppc64el.deb ... 251s Unpacking libnetplan1:ppc64el (1.0-1) ... 251s Preparing to unpack .../09-python3-netplan_1.0-1_ppc64el.deb ... 251s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ... 251s Preparing to unpack .../10-netplan-generator_1.0-1_ppc64el.deb ... 251s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 251s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ... 251s Preparing to unpack .../11-initramfs-tools-bin_0.142ubuntu23_ppc64el.deb ... 251s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ... 251s Preparing to unpack .../12-initramfs-tools-core_0.142ubuntu23_all.deb ... 251s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ... 251s Preparing to unpack .../13-initramfs-tools_0.142ubuntu23_all.deb ... 251s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ... 251s Preparing to unpack .../14-netplan.io_1.0-1_ppc64el.deb ... 251s Unpacking netplan.io (1.0-1) over (0.107.1-3) ... 251s Preparing to unpack .../15-libxmlb2_0.3.15-1build1_ppc64el.deb ... 251s Unpacking libxmlb2:ppc64el (0.3.15-1build1) over (0.3.15-1) ... 251s dpkg: libgpgme11:ppc64el: dependency problems, but removing anyway as you requested: 251s libvolume-key1:ppc64el depends on libgpgme11 (>= 1.4.1). 251s libjcat1:ppc64el depends on libgpgme11 (>= 1.2.0). 251s 251s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 251s Removing libgpgme11:ppc64el (1.18.0-4ubuntu1) ... 251s Selecting previously unselected package libgpgme11t64:ppc64el. 251s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70151 files and directories currently installed.) 251s Preparing to unpack .../00-libgpgme11t64_1.18.0-4.1ubuntu3_ppc64el.deb ... 251s Unpacking libgpgme11t64:ppc64el (1.18.0-4.1ubuntu3) ... 251s Preparing to unpack .../01-libvolume-key1_0.3.12-7build1_ppc64el.deb ... 251s Unpacking libvolume-key1:ppc64el (0.3.12-7build1) over (0.3.12-5build2) ... 251s Preparing to unpack .../02-libqrtr-glib0_1.2.2-1ubuntu3_ppc64el.deb ... 251s Unpacking libqrtr-glib0:ppc64el (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ... 251s Preparing to unpack .../03-libqmi-glib5_1.35.2-0ubuntu1_ppc64el.deb ... 251s Unpacking libqmi-glib5:ppc64el (1.35.2-0ubuntu1) over (1.34.0-2) ... 251s Preparing to unpack .../04-libqmi-proxy_1.35.2-0ubuntu1_ppc64el.deb ... 251s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ... 251s Preparing to unpack .../05-libpolkit-agent-1-0_124-1ubuntu1_ppc64el.deb ... 251s Unpacking libpolkit-agent-1-0:ppc64el (124-1ubuntu1) over (124-1) ... 251s Preparing to unpack .../06-libpolkit-gobject-1-0_124-1ubuntu1_ppc64el.deb ... 251s Unpacking libpolkit-gobject-1-0:ppc64el (124-1ubuntu1) over (124-1) ... 251s Preparing to unpack .../07-libmm-glib0_1.23.4-0ubuntu1_ppc64el.deb ... 251s Unpacking libmm-glib0:ppc64el (1.23.4-0ubuntu1) over (1.22.0-3) ... 251s Preparing to unpack .../08-libmbim-glib4_1.31.2-0ubuntu2_ppc64el.deb ... 251s Unpacking libmbim-glib4:ppc64el (1.31.2-0ubuntu2) over (1.30.0-1) ... 251s Preparing to unpack .../09-libmbim-proxy_1.31.2-0ubuntu2_ppc64el.deb ... 251s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ... 251s Preparing to unpack .../10-libjson-glib-1.0-common_1.8.0-2build1_all.deb ... 251s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ... 251s Preparing to unpack .../11-libjson-glib-1.0-0_1.8.0-2build1_ppc64el.deb ... 251s Unpacking libjson-glib-1.0-0:ppc64el (1.8.0-2build1) over (1.8.0-2) ... 251s Preparing to unpack .../12-libgusb2_0.4.8-1build1_ppc64el.deb ... 251s Unpacking libgusb2:ppc64el (0.4.8-1build1) over (0.4.8-1) ... 251s Preparing to unpack .../13-libgudev-1.0-0_1%3a238-3ubuntu2_ppc64el.deb ... 251s Unpacking libgudev-1.0-0:ppc64el (1:238-3ubuntu2) over (1:238-3) ... 251s Preparing to unpack .../14-tnftp_20230507-2build1_ppc64el.deb ... 251s Unpacking tnftp (20230507-2build1) over (20230507-2) ... 251s Preparing to unpack .../15-tcpdump_4.99.4-3ubuntu2_ppc64el.deb ... 251s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ... 252s Preparing to unpack .../16-libsystemd0_255.4-1ubuntu5_ppc64el.deb ... 252s Unpacking libsystemd0:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 252s Setting up libsystemd0:ppc64el (255.4-1ubuntu5) ... 252s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 252s Preparing to unpack .../systemd-dev_255.4-1ubuntu5_all.deb ... 252s Unpacking systemd-dev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 252s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_ppc64el.deb ... 252s Unpacking libnss-systemd:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 252s Preparing to unpack .../libudev1_255.4-1ubuntu5_ppc64el.deb ... 252s Unpacking libudev1:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 252s Setting up libudev1:ppc64el (255.4-1ubuntu5) ... 252s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 252s wget depends on libssl3 (>= 3.0.0). 252s systemd-resolved depends on libssl3 (>= 3.0.0). 252s systemd depends on libssl3 (>= 3.0.0). 252s sudo depends on libssl3 (>= 3.0.0). 252s rsync depends on libssl3 (>= 3.0.0). 252s python3-cryptography depends on libssl3 (>= 3.0.0). 252s openssl depends on libssl3 (>= 3.0.9). 252s openssh-server depends on libssl3 (>= 3.0.10). 252s openssh-client depends on libssl3 (>= 3.0.10). 252s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 252s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 252s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 252s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 252s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 252s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 252s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 252s libnvme1 depends on libssl3 (>= 3.0.0). 252s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 252s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 252s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 252s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 252s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 252s kmod depends on libssl3 (>= 3.0.0). 252s dhcpcd-base depends on libssl3 (>= 3.0.0). 252s coreutils depends on libssl3 (>= 3.0.0). 252s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 252s 252s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 252s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 252s Selecting previously unselected package libssl3t64:ppc64el. 252s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70147 files and directories currently installed.) 252s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 252s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 252s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 252s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 252s Preparing to unpack .../systemd_255.4-1ubuntu5_ppc64el.deb ... 252s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 252s Preparing to unpack .../udev_255.4-1ubuntu5_ppc64el.deb ... 252s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 252s Preparing to unpack .../libsystemd-shared_255.4-1ubuntu5_ppc64el.deb ... 252s Unpacking libsystemd-shared:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 252s Setting up libsystemd-shared:ppc64el (255.4-1ubuntu5) ... 252s Setting up systemd-dev (255.4-1ubuntu5) ... 252s Setting up systemd (255.4-1ubuntu5) ... 253s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 253s Preparing to unpack .../00-systemd-sysv_255.4-1ubuntu5_ppc64el.deb ... 253s Unpacking systemd-sysv (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 253s Preparing to unpack .../01-libpam-systemd_255.4-1ubuntu5_ppc64el.deb ... 253s Unpacking libpam-systemd:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 253s Preparing to unpack .../02-systemd-timesyncd_255.4-1ubuntu5_ppc64el.deb ... 253s Unpacking systemd-timesyncd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 253s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_ppc64el.deb ... 253s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 253s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_ppc64el.deb ... 253s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ... 253s Preparing to unpack .../05-rsync_3.2.7-1build1_ppc64el.deb ... 253s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ... 254s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_ppc64el.deb ... 254s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ... 254s Preparing to unpack .../07-openssl_3.0.13-0ubuntu2_ppc64el.deb ... 254s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 254s Preparing to unpack .../08-openssh-sftp-server_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 254s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 254s Preparing to unpack .../09-openssh-client_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 254s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 254s Preparing to unpack .../10-openssh-server_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 254s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 254s Preparing to unpack .../11-libssh-4_0.10.6-2build1_ppc64el.deb ... 254s Unpacking libssh-4:ppc64el (0.10.6-2build1) over (0.10.6-2) ... 254s Preparing to unpack .../12-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ... 254s Unpacking libsasl2-modules:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 254s Preparing to unpack .../13-python3.12_3.12.2-4build3_ppc64el.deb ... 254s Unpacking python3.12 (3.12.2-4build3) over (3.12.2-1) ... 254s Preparing to unpack .../14-python3.12-minimal_3.12.2-4build3_ppc64el.deb ... 254s Unpacking python3.12-minimal (3.12.2-4build3) over (3.12.2-1) ... 254s Preparing to unpack .../15-libpython3.12-minimal_3.12.2-4build3_ppc64el.deb ... 254s Unpacking libpython3.12-minimal:ppc64el (3.12.2-4build3) over (3.12.2-1) ... 254s Preparing to unpack .../16-grub-ieee1275_2.12-1ubuntu5_ppc64el.deb ... 254s Unpacking grub-ieee1275 (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 254s Preparing to unpack .../17-grub2-common_2.12-1ubuntu5_ppc64el.deb ... 254s Unpacking grub2-common (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 254s Preparing to unpack .../18-grub-common_2.12-1ubuntu5_ppc64el.deb ... 254s Unpacking grub-common (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 255s Preparing to unpack .../19-grub-ieee1275-bin_2.12-1ubuntu5_ppc64el.deb ... 255s Unpacking grub-ieee1275-bin (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 255s dpkg: libparted2:ppc64el: dependency problems, but removing anyway as you requested: 255s parted depends on libparted2 (= 3.6-3). 255s 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 255s Removing libparted2:ppc64el (3.6-3) ... 255s Selecting previously unselected package libparted2t64:ppc64el. 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70154 files and directories currently installed.) 255s Preparing to unpack .../0-libparted2t64_3.6-3.1build2_ppc64el.deb ... 255s Unpacking libparted2t64:ppc64el (3.6-3.1build2) ... 255s Preparing to unpack .../1-parted_3.6-3.1build2_ppc64el.deb ... 255s Unpacking parted (3.6-3.1build2) over (3.6-3) ... 255s Preparing to unpack .../2-python3.11_3.11.8-1build4_ppc64el.deb ... 255s Unpacking python3.11 (3.11.8-1build4) over (3.11.8-1) ... 255s Preparing to unpack .../3-python3.11-minimal_3.11.8-1build4_ppc64el.deb ... 255s Unpacking python3.11-minimal (3.11.8-1build4) over (3.11.8-1) ... 255s Preparing to unpack .../4-libpython3.11-minimal_3.11.8-1build4_ppc64el.deb ... 255s Unpacking libpython3.11-minimal:ppc64el (3.11.8-1build4) over (3.11.8-1) ... 255s Preparing to unpack .../5-libpython3.11-stdlib_3.11.8-1build4_ppc64el.deb ... 255s Unpacking libpython3.11-stdlib:ppc64el (3.11.8-1build4) over (3.11.8-1) ... 255s Preparing to unpack .../6-gnupg-utils_2.4.4-2ubuntu15_ppc64el.deb ... 255s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 255s Preparing to unpack .../7-gpg-agent_2.4.4-2ubuntu15_ppc64el.deb ... 255s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 255s Preparing to unpack .../8-gpg-wks-client_2.4.4-2ubuntu15_ppc64el.deb ... 255s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 255s Preparing to unpack .../9-gpg_2.4.4-2ubuntu15_ppc64el.deb ... 255s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 255s dpkg: libnpth0:ppc64el: dependency problems, but removing anyway as you requested: 255s keyboxd depends on libnpth0 (>= 0.90). 255s gpgv depends on libnpth0 (>= 0.90). 255s gpgsm depends on libnpth0 (>= 0.90). 255s dirmngr depends on libnpth0 (>= 0.90). 255s 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70159 files and directories currently installed.) 255s Removing libnpth0:ppc64el (1.6-3build2) ... 255s Selecting previously unselected package libnpth0t64:ppc64el. 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70154 files and directories currently installed.) 255s Preparing to unpack .../libnpth0t64_1.6-3.1_ppc64el.deb ... 255s Unpacking libnpth0t64:ppc64el (1.6-3.1) ... 255s Setting up libnpth0t64:ppc64el (1.6-3.1) ... 255s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 255s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_ppc64el.deb ... 255s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 256s Setting up gpgv (2.4.4-2ubuntu15) ... 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 256s Preparing to unpack .../dirmngr_2.4.4-2ubuntu15_ppc64el.deb ... 256s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 256s Preparing to unpack .../gnupg_2.4.4-2ubuntu15_all.deb ... 256s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 256s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_ppc64el.deb ... 256s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 256s Preparing to unpack .../gpgconf_2.4.4-2ubuntu15_ppc64el.deb ... 256s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 256s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_ppc64el.deb ... 256s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 256s dpkg: libreadline8:ppc64el: dependency problems, but removing anyway as you requested: 256s libpython3.12-stdlib:ppc64el depends on libreadline8 (>= 7.0~beta). 256s gawk depends on libreadline8 (>= 6.0). 256s fdisk depends on libreadline8 (>= 6.0). 256s bc depends on libreadline8 (>= 6.0). 256s 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 256s Removing libreadline8:ppc64el (8.2-3) ... 256s Selecting previously unselected package libreadline8t64:ppc64el. 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70148 files and directories currently installed.) 256s Preparing to unpack .../libreadline8t64_8.2-4_ppc64el.deb ... 256s Adding 'diversion of /lib/powerpc64le-linux-gnu/libhistory.so.8 to /lib/powerpc64le-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 256s Adding 'diversion of /lib/powerpc64le-linux-gnu/libhistory.so.8.2 to /lib/powerpc64le-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 256s Adding 'diversion of /lib/powerpc64le-linux-gnu/libreadline.so.8 to /lib/powerpc64le-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 256s Adding 'diversion of /lib/powerpc64le-linux-gnu/libreadline.so.8.2 to /lib/powerpc64le-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 256s Unpacking libreadline8t64:ppc64el (8.2-4) ... 256s Setting up libreadline8t64:ppc64el (8.2-4) ... 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 256s Preparing to unpack .../gawk_1%3a5.2.1-2build2_ppc64el.deb ... 256s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ... 256s Preparing to unpack .../fdisk_2.39.3-9ubuntu2_ppc64el.deb ... 256s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 256s Preparing to unpack .../bc_1.07.1-3ubuntu2_ppc64el.deb ... 256s Unpacking bc (1.07.1-3ubuntu2) over (1.07.1-3build1) ... 256s Preparing to unpack .../libpython3.12-stdlib_3.12.2-4build3_ppc64el.deb ... 256s Unpacking libpython3.12-stdlib:ppc64el (3.12.2-4build3) over (3.12.2-1) ... 256s Preparing to unpack .../perl-base_5.38.2-3.2_ppc64el.deb ... 256s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 256s Setting up perl-base (5.38.2-3.2) ... 256s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70166 files and directories currently installed.) 256s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... 256s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 257s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_ppc64el.deb ... 257s Unpacking python3-gdbm:ppc64el (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 257s Preparing to unpack .../man-db_2.12.0-3build4_ppc64el.deb ... 257s Unpacking man-db (2.12.0-3build4) over (2.12.0-3) ... 257s dpkg: libgdbm-compat4:ppc64el: dependency problems, but removing anyway as you requested: 257s libperl5.38:ppc64el depends on libgdbm-compat4 (>= 1.18-3). 257s 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70166 files and directories currently installed.) 257s Removing libgdbm-compat4:ppc64el (1.23-5) ... 257s dpkg: libgdbm6:ppc64el: dependency problems, but removing anyway as you requested: 257s libperl5.38:ppc64el depends on libgdbm6 (>= 1.21). 257s 257s Removing libgdbm6:ppc64el (1.23-5) ... 257s Selecting previously unselected package libgdbm6t64:ppc64el. 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 257s Preparing to unpack .../libgdbm6t64_1.23-5.1_ppc64el.deb ... 257s Unpacking libgdbm6t64:ppc64el (1.23-5.1) ... 257s Selecting previously unselected package libgdbm-compat4t64:ppc64el. 257s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_ppc64el.deb ... 257s Unpacking libgdbm-compat4t64:ppc64el (1.23-5.1) ... 257s dpkg: libperl5.38:ppc64el: dependency problems, but removing anyway as you requested: 257s perl depends on libperl5.38 (= 5.38.2-3). 257s 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 257s Removing libperl5.38:ppc64el (5.38.2-3) ... 257s Selecting previously unselected package libperl5.38t64:ppc64el. 257s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69645 files and directories currently installed.) 257s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_ppc64el.deb ... 257s Unpacking libperl5.38t64:ppc64el (5.38.2-3.2) ... 258s Preparing to unpack .../perl_5.38.2-3.2_ppc64el.deb ... 258s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ... 258s dpkg: libdb5.3:ppc64el: dependency problems, but removing anyway as you requested: 258s libsasl2-modules-db:ppc64el depends on libdb5.3. 258s libpam-modules:ppc64el depends on libdb5.3. 258s iproute2 depends on libdb5.3. 258s apt-utils depends on libdb5.3. 258s 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 258s Removing libdb5.3:ppc64el (5.3.28+dfsg2-4) ... 258s Selecting previously unselected package libdb5.3t64:ppc64el. 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70162 files and directories currently installed.) 258s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_ppc64el.deb ... 258s Unpacking libdb5.3t64:ppc64el (5.3.28+dfsg2-6) ... 258s Preparing to unpack .../libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ... 258s Unpacking libsasl2-modules-db:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 258s Preparing to unpack .../libsasl2-2_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ... 258s Unpacking libsasl2-2:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 258s dpkg: libnvme1: dependency problems, but removing anyway as you requested: 258s libblockdev-nvme3:ppc64el depends on libnvme1 (>= 1.7.1). 258s 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 258s Removing libnvme1 (1.8-2) ... 258s Selecting previously unselected package libnvme1t64. 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70161 files and directories currently installed.) 258s Preparing to unpack .../libnvme1t64_1.8-3_ppc64el.deb ... 258s Unpacking libnvme1t64 (1.8-3) ... 258s Preparing to unpack .../wget_1.21.4-1ubuntu2_ppc64el.deb ... 258s Unpacking wget (1.21.4-1ubuntu2) over (1.21.4-1ubuntu1) ... 258s dpkg: libcurl4:ppc64el: dependency problems, but removing anyway as you requested: 258s curl depends on libcurl4 (= 8.5.0-2ubuntu2). 258s 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70169 files and directories currently installed.) 258s Removing libcurl4:ppc64el (8.5.0-2ubuntu2) ... 258s Selecting previously unselected package libcurl4t64:ppc64el. 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70164 files and directories currently installed.) 258s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu8_ppc64el.deb ... 258s Unpacking libcurl4t64:ppc64el (8.5.0-2ubuntu8) ... 258s Preparing to unpack .../curl_8.5.0-2ubuntu8_ppc64el.deb ... 258s Unpacking curl (8.5.0-2ubuntu8) over (8.5.0-2ubuntu2) ... 258s dpkg: libpsl5:ppc64el: dependency problems, but removing anyway as you requested: 258s libcurl3-gnutls:ppc64el depends on libpsl5 (>= 0.16.0). 258s 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70170 files and directories currently installed.) 258s Removing libpsl5:ppc64el (0.21.2-1build1) ... 258s Selecting previously unselected package libpsl5t64:ppc64el. 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 258s Preparing to unpack .../libpsl5t64_0.21.2-1.1_ppc64el.deb ... 258s Unpacking libpsl5t64:ppc64el (0.21.2-1.1) ... 258s dpkg: libarchive13:ppc64el: dependency problems, but removing anyway as you requested: 258s fwupd depends on libarchive13 (>= 3.2.1). 258s 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70171 files and directories currently installed.) 258s Removing libarchive13:ppc64el (3.7.2-1ubuntu2) ... 258s Selecting previously unselected package libarchive13t64:ppc64el. 258s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 258s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_ppc64el.deb ... 258s Unpacking libarchive13t64:ppc64el (3.7.2-1.1ubuntu2) ... 258s Preparing to unpack .../fwupd_1.9.15-2_ppc64el.deb ... 258s Unpacking fwupd (1.9.15-2) over (1.9.14-1) ... 259s dpkg: libcurl3-gnutls:ppc64el: dependency problems, but removing anyway as you requested: 259s libfwupd2:ppc64el depends on libcurl3-gnutls (>= 7.63.0). 259s 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70172 files and directories currently installed.) 259s Removing libcurl3-gnutls:ppc64el (8.5.0-2ubuntu2) ... 259s Selecting previously unselected package libcurl3t64-gnutls:ppc64el. 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 259s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu8_ppc64el.deb ... 259s Unpacking libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu8) ... 259s Preparing to unpack .../01-libfwupd2_1.9.15-2_ppc64el.deb ... 259s Unpacking libfwupd2:ppc64el (1.9.15-2) over (1.9.14-1) ... 259s Preparing to unpack .../02-libblockdev3_3.1.0-1build1_ppc64el.deb ... 259s Unpacking libblockdev3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 259s Preparing to unpack .../03-libblockdev-utils3_3.1.0-1build1_ppc64el.deb ... 259s Unpacking libblockdev-utils3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 259s Preparing to unpack .../04-libblockdev-swap3_3.1.0-1build1_ppc64el.deb ... 259s Unpacking libblockdev-swap3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 259s Preparing to unpack .../05-libblockdev-part3_3.1.0-1build1_ppc64el.deb ... 259s Unpacking libblockdev-part3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 259s Preparing to unpack .../06-libblockdev-nvme3_3.1.0-1build1_ppc64el.deb ... 259s Unpacking libblockdev-nvme3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 259s Preparing to unpack .../07-libblockdev-mdraid3_3.1.0-1build1_ppc64el.deb ... 259s Unpacking libblockdev-mdraid3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 259s Preparing to unpack .../08-libblockdev-loop3_3.1.0-1build1_ppc64el.deb ... 259s Unpacking libblockdev-loop3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 259s Preparing to unpack .../09-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ... 259s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 259s Preparing to unpack .../10-logsave_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 259s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 259s dpkg: libext2fs2:ppc64el: dependency problems, but removing anyway as you requested: 259s libblockdev-fs3:ppc64el depends on libext2fs2 (>= 1.42.11). 259s e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1). 259s btrfs-progs depends on libext2fs2 (>= 1.42). 259s 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70172 files and directories currently installed.) 259s Removing libext2fs2:ppc64el (1.47.0-2ubuntu1) ... 259s Selecting previously unselected package libext2fs2t64:ppc64el. 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 259s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 259s Adding 'diversion of /lib/powerpc64le-linux-gnu/libe2p.so.2 to /lib/powerpc64le-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' 259s Adding 'diversion of /lib/powerpc64le-linux-gnu/libe2p.so.2.3 to /lib/powerpc64le-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' 259s Adding 'diversion of /lib/powerpc64le-linux-gnu/libext2fs.so.2 to /lib/powerpc64le-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' 259s Adding 'diversion of /lib/powerpc64le-linux-gnu/libext2fs.so.2.4 to /lib/powerpc64le-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' 259s Unpacking libext2fs2t64:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 259s Setting up libext2fs2t64:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70181 files and directories currently installed.) 259s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 259s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 259s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested: 259s btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27). 259s 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70181 files and directories currently installed.) 259s Removing libreiserfscore0 (1:3.6.27-7) ... 259s Selecting previously unselected package libreiserfscore0t64. 259s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70176 files and directories currently installed.) 259s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_ppc64el.deb ... 259s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ... 259s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_ppc64el.deb ... 259s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ... 259s Preparing to unpack .../libblockdev-fs3_3.1.0-1build1_ppc64el.deb ... 259s Unpacking libblockdev-fs3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 259s Preparing to unpack .../libblockdev-crypto3_3.1.0-1build1_ppc64el.deb ... 259s Unpacking libblockdev-crypto3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 259s Preparing to unpack .../bolt_0.9.6-2build1_ppc64el.deb ... 259s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ... 259s dpkg: libglib2.0-0:ppc64el: dependency problems, but removing anyway as you requested: 259s libnetplan0:ppc64el depends on libglib2.0-0 (>= 2.75.3). 259s libjcat1:ppc64el depends on libglib2.0-0 (>= 2.75.3). 259s 260s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70182 files and directories currently installed.) 260s Removing libglib2.0-0:ppc64el (2.79.2-1~ubuntu1) ... 260s Selecting previously unselected package libglib2.0-0t64:ppc64el. 260s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 260s Preparing to unpack .../0-libglib2.0-0t64_2.79.3-3ubuntu5_ppc64el.deb ... 260s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 260s removed '/var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm' 260s Unpacking libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 260s Preparing to unpack .../1-libjcat1_0.2.0-2build2_ppc64el.deb ... 260s Unpacking libjcat1:ppc64el (0.2.0-2build2) over (0.2.0-2) ... 260s Preparing to unpack .../2-libldap2_2.6.7+dfsg-1~exp1ubuntu6_ppc64el.deb ... 260s Unpacking libldap2:ppc64el (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 260s Preparing to unpack .../3-ubuntu-pro-client-l10n_31.2.2_ppc64el.deb ... 260s Unpacking ubuntu-pro-client-l10n (31.2.2) over (31.1) ... 260s Preparing to unpack .../4-ubuntu-pro-client_31.2.2_ppc64el.deb ... 260s Unpacking ubuntu-pro-client (31.2.2) over (31.1) ... 260s Preparing to unpack .../5-python3-apt_2.7.7_ppc64el.deb ... 260s Unpacking python3-apt (2.7.7) over (2.7.6) ... 260s Preparing to unpack .../6-apt-utils_2.7.14_ppc64el.deb ... 260s Unpacking apt-utils (2.7.14) over (2.7.12) ... 260s dpkg: libapt-pkg6.0:ppc64el: dependency problems, but removing anyway as you requested: 260s apt depends on libapt-pkg6.0 (>= 2.7.12). 260s 260s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70180 files and directories currently installed.) 260s Removing libapt-pkg6.0:ppc64el (2.7.12) ... 260s dpkg: libnettle8:ppc64el: dependency problems, but removing anyway as you requested: 260s librtmp1:ppc64el depends on libnettle8. 260s libhogweed6:ppc64el depends on libnettle8. 260s libgnutls30:ppc64el depends on libnettle8 (>= 3.9~). 260s 260s Removing libnettle8:ppc64el (3.9.1-2) ... 260s Selecting previously unselected package libapt-pkg6.0t64:ppc64el. 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70124 files and directories currently installed.) 261s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_ppc64el.deb ... 261s Unpacking libapt-pkg6.0t64:ppc64el (2.7.14) ... 261s Setting up libapt-pkg6.0t64:ppc64el (2.7.14) ... 261s Selecting previously unselected package libnettle8t64:ppc64el. 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70174 files and directories currently installed.) 261s Preparing to unpack .../libnettle8t64_3.9.1-2.2_ppc64el.deb ... 261s Unpacking libnettle8t64:ppc64el (3.9.1-2.2) ... 261s Setting up libnettle8t64:ppc64el (3.9.1-2.2) ... 261s dpkg: libhogweed6:ppc64el: dependency problems, but removing anyway as you requested: 261s librtmp1:ppc64el depends on libhogweed6. 261s libgnutls30:ppc64el depends on libhogweed6 (>= 3.6). 261s 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70182 files and directories currently installed.) 261s Removing libhogweed6:ppc64el (3.9.1-2) ... 261s Selecting previously unselected package libhogweed6t64:ppc64el. 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70177 files and directories currently installed.) 261s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_ppc64el.deb ... 261s Unpacking libhogweed6t64:ppc64el (3.9.1-2.2) ... 261s Setting up libhogweed6t64:ppc64el (3.9.1-2.2) ... 261s dpkg: libgnutls30:ppc64el: dependency problems, but removing anyway as you requested: 261s librtmp1:ppc64el depends on libgnutls30 (>= 3.7.2). 261s apt depends on libgnutls30 (>= 3.8.1). 261s 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70183 files and directories currently installed.) 261s Removing libgnutls30:ppc64el (3.8.3-1ubuntu1) ... 261s Selecting previously unselected package libgnutls30t64:ppc64el. 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70174 files and directories currently installed.) 261s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_ppc64el.deb ... 261s Unpacking libgnutls30t64:ppc64el (3.8.3-1.1ubuntu2) ... 261s Setting up libgnutls30t64:ppc64el (3.8.3-1.1ubuntu2) ... 261s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 261s Preparing to unpack .../apt_2.7.14_ppc64el.deb ... 261s Unpacking apt (2.7.14) over (2.7.12) ... 261s Setting up apt (2.7.14) ... 262s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 262s Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2build6_ppc64el.deb ... 262s Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build6) over (2.4+20151223.gitfa8646d.1-2build4) ... 262s Preparing to unpack .../liblzma5_5.6.0-0.2_ppc64el.deb ... 262s Unpacking liblzma5:ppc64el (5.6.0-0.2) over (5.4.5-0.3) ... 262s Setting up liblzma5:ppc64el (5.6.0-0.2) ... 262s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 262s Preparing to unpack .../libblkid1_2.39.3-9ubuntu2_ppc64el.deb ... 262s Unpacking libblkid1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 262s Setting up libblkid1:ppc64el (2.39.3-9ubuntu2) ... 262s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 262s Preparing to unpack .../kmod_31+20240202-2ubuntu4_ppc64el.deb ... 262s Unpacking kmod (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 262s Preparing to unpack .../libkmod2_31+20240202-2ubuntu4_ppc64el.deb ... 262s Unpacking libkmod2:ppc64el (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 262s Preparing to unpack .../libselinux1_3.5-2ubuntu1_ppc64el.deb ... 262s Unpacking libselinux1:ppc64el (3.5-2ubuntu1) over (3.5-2build1) ... 262s Setting up libselinux1:ppc64el (3.5-2ubuntu1) ... 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 263s Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1_all.deb ... 263s Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.1.2-2) ... 263s Setting up libaudit-common (1:3.1.2-2.1) ... 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 263s Preparing to unpack .../libcap-ng0_0.8.4-2build1_ppc64el.deb ... 263s Unpacking libcap-ng0:ppc64el (0.8.4-2build1) over (0.8.4-2) ... 263s Setting up libcap-ng0:ppc64el (0.8.4-2build1) ... 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 263s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_ppc64el.deb ... 263s Unpacking libaudit1:ppc64el (1:3.1.2-2.1) over (1:3.1.2-2) ... 263s Setting up libaudit1:ppc64el (1:3.1.2-2.1) ... 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 263s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_ppc64el.deb ... 263s Unpacking libpam0g:ppc64el (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 263s Setting up libpam0g:ppc64el (1.5.3-5ubuntu3) ... 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 263s Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu3_ppc64el.deb ... 263s Unpacking libpam-modules-bin (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 263s Setting up libpam-modules-bin (1.5.3-5ubuntu3) ... 263s pam_namespace.service is a disabled or a static unit not running, not starting it. 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 263s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu3_ppc64el.deb ... 263s Unpacking libpam-modules:ppc64el (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 264s Setting up libpam-modules:ppc64el (1.5.3-5ubuntu3) ... 264s Installing new version of config file /etc/security/namespace.init ... 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 264s Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu3_all.deb ... 264s Unpacking libpam-runtime (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 264s Setting up libpam-runtime (1.5.3-5ubuntu3) ... 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 264s Preparing to unpack .../0-dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ... 264s Unpacking dbus-session-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 264s Preparing to unpack .../1-dbus-user-session_1.14.10-4ubuntu2_ppc64el.deb ... 264s Unpacking dbus-user-session (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 264s Preparing to unpack .../2-libapparmor1_4.0.0-beta3-0ubuntu2_ppc64el.deb ... 264s Unpacking libapparmor1:ppc64el (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 264s Preparing to unpack .../3-dbus-system-bus-common_1.14.10-4ubuntu2_all.deb ... 264s Unpacking dbus-system-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 264s Preparing to unpack .../4-dbus-bin_1.14.10-4ubuntu2_ppc64el.deb ... 264s Unpacking dbus-bin (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 264s Preparing to unpack .../5-dbus_1.14.10-4ubuntu2_ppc64el.deb ... 264s Unpacking dbus (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 264s Preparing to unpack .../6-dbus-daemon_1.14.10-4ubuntu2_ppc64el.deb ... 264s Unpacking dbus-daemon (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 264s Preparing to unpack .../7-libdbus-1-3_1.14.10-4ubuntu2_ppc64el.deb ... 264s Unpacking libdbus-1-3:ppc64el (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 264s Preparing to unpack .../8-libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_ppc64el.deb ... 264s Unpacking libdevmapper1.02.1:ppc64el (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 264s Preparing to unpack .../9-libuuid1_2.39.3-9ubuntu2_ppc64el.deb ... 264s Unpacking libuuid1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 264s Setting up libuuid1:ppc64el (2.39.3-9ubuntu2) ... 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 264s Preparing to unpack .../libcryptsetup12_2%3a2.7.0-1ubuntu2_ppc64el.deb ... 264s Unpacking libcryptsetup12:ppc64el (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 264s Preparing to unpack .../libfdisk1_2.39.3-9ubuntu2_ppc64el.deb ... 264s Unpacking libfdisk1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 264s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu2_ppc64el.deb ... 264s Unpacking libseccomp2:ppc64el (2.5.5-1ubuntu2) over (2.5.5-1ubuntu1) ... 264s Setting up libseccomp2:ppc64el (2.5.5-1ubuntu2) ... 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 264s Preparing to unpack .../mount_2.39.3-9ubuntu2_ppc64el.deb ... 264s Unpacking mount (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 264s Preparing to unpack .../libmount1_2.39.3-9ubuntu2_ppc64el.deb ... 264s Unpacking libmount1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 264s Setting up libmount1:ppc64el (2.39.3-9ubuntu2) ... 264s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 264s Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu1_ppc64el.deb ... 264s Unpacking zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 264s Setting up zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu1) ... 264s Setting up libpython3.12-minimal:ppc64el (3.12.2-4build3) ... 264s Setting up python3.12-minimal (3.12.2-4build3) ... 265s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 265s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_ppc64el.deb ... 265s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 265s Setting up python3-minimal (3.12.2-0ubuntu1) ... 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 266s Preparing to unpack .../python3_3.12.2-0ubuntu1_ppc64el.deb ... 266s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 266s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_ppc64el.deb ... 266s Unpacking libplymouth5:ppc64el (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 266s dpkg: libpng16-16:ppc64el: dependency problems, but removing anyway as you requested: 266s libfreetype6:ppc64el depends on libpng16-16 (>= 1.6.2-1). 266s 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 266s Removing libpng16-16:ppc64el (1.6.43-1) ... 266s Selecting previously unselected package libpng16-16t64:ppc64el. 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70190 files and directories currently installed.) 266s Preparing to unpack .../0-libpng16-16t64_1.6.43-3_ppc64el.deb ... 266s Unpacking libpng16-16t64:ppc64el (1.6.43-3) ... 266s Preparing to unpack .../1-libbrotli1_1.1.0-2build1_ppc64el.deb ... 266s Unpacking libbrotli1:ppc64el (1.1.0-2build1) over (1.1.0-2) ... 266s Preparing to unpack .../2-libfreetype6_2.13.2+dfsg-1build2_ppc64el.deb ... 266s Unpacking libfreetype6:ppc64el (2.13.2+dfsg-1build2) over (2.13.2+dfsg-1) ... 266s Preparing to unpack .../3-libsqlite3-0_3.45.1-1ubuntu1_ppc64el.deb ... 266s Unpacking libsqlite3-0:ppc64el (3.45.1-1ubuntu1) over (3.45.1-1) ... 266s Preparing to unpack .../4-pinentry-curses_1.2.1-3ubuntu4_ppc64el.deb ... 266s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ... 266s Preparing to unpack .../5-gcc-14-base_14-20240315-1ubuntu1_ppc64el.deb ... 266s Unpacking gcc-14-base:ppc64el (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 266s Setting up gcc-14-base:ppc64el (14-20240315-1ubuntu1) ... 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 266s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_ppc64el.deb ... 266s Unpacking libgcc-s1:ppc64el (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 266s Setting up libgcc-s1:ppc64el (14-20240315-1ubuntu1) ... 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 266s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_ppc64el.deb ... 266s Unpacking libstdc++6:ppc64el (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 266s Setting up libstdc++6:ppc64el (14-20240315-1ubuntu1) ... 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 266s Preparing to unpack .../python-apt-common_2.7.7_all.deb ... 266s Unpacking python-apt-common (2.7.7) over (2.7.6) ... 266s Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu2_ppc64el.deb ... 266s Unpacking libsmartcols1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 266s Setting up libsmartcols1:ppc64el (2.39.3-9ubuntu2) ... 266s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 266s Preparing to unpack .../00-readline-common_8.2-4_all.deb ... 266s Unpacking readline-common (8.2-4) over (8.2-3) ... 266s Preparing to unpack .../01-bsdextrautils_2.39.3-9ubuntu2_ppc64el.deb ... 266s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 266s Preparing to unpack .../02-groff-base_1.23.0-3build1_ppc64el.deb ... 266s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ... 266s Preparing to unpack .../03-libpython3-stdlib_3.12.2-0ubuntu1_ppc64el.deb ... 266s Unpacking libpython3-stdlib:ppc64el (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 266s Preparing to unpack .../04-libfido2-1_1.14.0-1build1_ppc64el.deb ... 266s Unpacking libfido2-1:ppc64el (1.14.0-1build1) over (1.14.0-1) ... 267s Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-6ubuntu1_ppc64el.deb ... 267s Unpacking libgssapi-krb5-2:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 267s Preparing to unpack .../06-libkrb5-3_1.20.1-6ubuntu1_ppc64el.deb ... 267s Unpacking libkrb5-3:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 267s Preparing to unpack .../07-libkrb5support0_1.20.1-6ubuntu1_ppc64el.deb ... 267s Unpacking libkrb5support0:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 267s Preparing to unpack .../08-libk5crypto3_1.20.1-6ubuntu1_ppc64el.deb ... 267s Unpacking libk5crypto3:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 267s Preparing to unpack .../09-libcom-err2_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 267s Unpacking libcom-err2:ppc64el (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 267s Preparing to unpack .../10-libproc2-0_2%3a4.0.4-4ubuntu2_ppc64el.deb ... 267s Unpacking libproc2-0:ppc64el (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 267s Preparing to unpack .../11-procps_2%3a4.0.4-4ubuntu2_ppc64el.deb ... 267s Unpacking procps (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 267s Preparing to unpack .../12-libnghttp2-14_1.59.0-1build1_ppc64el.deb ... 267s Unpacking libnghttp2-14:ppc64el (1.59.0-1build1) over (1.59.0-1) ... 267s Preparing to unpack .../13-dpkg_1.22.6ubuntu5_ppc64el.deb ... 267s Unpacking dpkg (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 267s Setting up dpkg (1.22.6ubuntu5) ... 268s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 268s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_ppc64el.deb ... 268s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 268s Setting up util-linux (2.39.3-9ubuntu2) ... 269s fstrim.service is a disabled or a static unit not running, not starting it. 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 269s Preparing to unpack .../libxml2_2.9.14+dfsg-1.3ubuntu2_ppc64el.deb ... 269s Unpacking libxml2:ppc64el (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ... 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 269s Removing libatm1:ppc64el (1:2.5.1-5) ... 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70197 files and directories currently installed.) 269s Preparing to unpack .../libbpf1_1%3a1.3.0-2build1_ppc64el.deb ... 269s Unpacking libbpf1:ppc64el (1:1.3.0-2build1) over (1:1.3.0-2) ... 269s Preparing to unpack .../iproute2_6.1.0-1ubuntu5_ppc64el.deb ... 269s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ... 269s dpkg: libelf1:ppc64el: dependency problems, but removing anyway as you requested: 269s linux-headers-6.8.0-11-generic depends on libelf1 (>= 0.144). 269s 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70197 files and directories currently installed.) 269s Removing libelf1:ppc64el (0.190-1) ... 269s Selecting previously unselected package libelf1t64:ppc64el. 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70192 files and directories currently installed.) 269s Preparing to unpack .../libelf1t64_0.190-1.1build2_ppc64el.deb ... 269s Unpacking libelf1t64:ppc64el (0.190-1.1build2) ... 269s Preparing to unpack .../dhcpcd-base_1%3a10.0.6-1ubuntu2_ppc64el.deb ... 269s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ... 269s Preparing to unpack .../file_1%3a5.45-3_ppc64el.deb ... 269s Unpacking file (1:5.45-3) over (1:5.45-2) ... 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70197 files and directories currently installed.) 269s Removing libmagic1:ppc64el (1:5.45-2) ... 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70187 files and directories currently installed.) 269s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_ppc64el.deb ... 269s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 269s Selecting previously unselected package libmagic1t64:ppc64el. 269s Preparing to unpack .../libmagic1t64_1%3a5.45-3_ppc64el.deb ... 269s Unpacking libmagic1t64:ppc64el (1:5.45-3) ... 269s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 269s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 269s Preparing to unpack .../lsof_4.95.0-1build2_ppc64el.deb ... 269s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ... 269s Preparing to unpack .../libnsl2_1.3.0-3build2_ppc64el.deb ... 269s Unpacking libnsl2:ppc64el (1.3.0-3build2) over (1.3.0-3) ... 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70198 files and directories currently installed.) 269s Removing libtirpc3:ppc64el (1.3.4+ds-1build1) ... 269s Selecting previously unselected package libtirpc3t64:ppc64el. 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70192 files and directories currently installed.) 269s Preparing to unpack .../libtirpc3t64_1.3.4+ds-1.1_ppc64el.deb ... 269s Adding 'diversion of /lib/powerpc64le-linux-gnu/libtirpc.so.3 to /lib/powerpc64le-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 269s Adding 'diversion of /lib/powerpc64le-linux-gnu/libtirpc.so.3.0.0 to /lib/powerpc64le-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 269s Unpacking libtirpc3t64:ppc64el (1.3.4+ds-1.1) ... 269s Preparing to unpack .../multipath-tools_0.9.4-5ubuntu6_ppc64el.deb ... 269s Unpacking multipath-tools (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ... 269s dpkg: liburcu8:ppc64el: dependency problems, but removing anyway as you requested: 269s xfsprogs depends on liburcu8 (>= 0.13.0). 269s 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 269s Removing liburcu8:ppc64el (0.14.0-3) ... 269s Selecting previously unselected package liburcu8t64:ppc64el. 269s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70183 files and directories currently installed.) 269s Preparing to unpack .../liburcu8t64_0.14.0-3.1_ppc64el.deb ... 269s Unpacking liburcu8t64:ppc64el (0.14.0-3.1) ... 270s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_ppc64el.deb ... 270s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 270s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_ppc64el.deb ... 270s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 270s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_ppc64el.deb ... 270s Unpacking bind9-libs:ppc64el (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70203 files and directories currently installed.) 270s Removing libuv1:ppc64el (1.48.0-1) ... 270s Selecting previously unselected package libuv1t64:ppc64el. 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70198 files and directories currently installed.) 270s Preparing to unpack .../libuv1t64_1.48.0-1.1_ppc64el.deb ... 270s Unpacking libuv1t64:ppc64el (1.48.0-1.1) ... 270s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu4_ppc64el.deb ... 270s Unpacking liblocale-gettext-perl (1.07-6ubuntu4) over (1.07-6build1) ... 270s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_ppc64el.deb ... 270s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 270s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_ppc64el.deb ... 270s Unpacking libdebconfclient0:ppc64el (0.271ubuntu2) over (0.271ubuntu1) ... 270s Setting up libdebconfclient0:ppc64el (0.271ubuntu2) ... 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 270s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ... 270s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ... 270s Setting up libsemanage-common (3.5-1build4) ... 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 270s Preparing to unpack .../libsemanage2_3.5-1build4_ppc64el.deb ... 270s Unpacking libsemanage2:ppc64el (3.5-1build4) over (3.5-1build2) ... 270s Setting up libsemanage2:ppc64el (3.5-1build4) ... 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 270s Preparing to unpack .../install-info_7.1-3build1_ppc64el.deb ... 270s Unpacking install-info (7.1-3build1) over (7.1-3) ... 270s Setting up install-info (7.1-3build1) ... 270s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 270s Preparing to unpack .../00-gcc-13-base_13.2.0-21ubuntu1_ppc64el.deb ... 270s Unpacking gcc-13-base:ppc64el (13.2.0-21ubuntu1) over (13.2.0-17ubuntu2) ... 270s Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 270s Unpacking libss2:ppc64el (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 270s Preparing to unpack .../02-dmsetup_2%3a1.02.185-3ubuntu2_ppc64el.deb ... 270s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 270s Preparing to unpack .../03-eject_2.39.3-9ubuntu2_ppc64el.deb ... 270s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 270s Preparing to unpack .../04-krb5-locales_1.20.1-6ubuntu1_all.deb ... 270s Unpacking krb5-locales (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 270s Preparing to unpack .../05-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 270s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 270s Preparing to unpack .../06-libslang2_2.3.3-3build1_ppc64el.deb ... 270s Unpacking libslang2:ppc64el (2.3.3-3build1) over (2.3.3-3) ... 270s Preparing to unpack .../07-libtext-charwidth-perl_0.04-11build2_ppc64el.deb ... 270s Unpacking libtext-charwidth-perl:ppc64el (0.04-11build2) over (0.04-11build1) ... 270s Preparing to unpack .../08-libtext-iconv-perl_1.7-8build2_ppc64el.deb ... 270s Unpacking libtext-iconv-perl:ppc64el (1.7-8build2) over (1.7-8build1) ... 270s Preparing to unpack .../09-python3-yaml_6.0.1-2build1_ppc64el.deb ... 270s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ... 270s Preparing to unpack .../10-python3-setuptools_68.1.2-2ubuntu1_all.deb ... 270s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ... 270s Preparing to unpack .../11-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ... 271s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ... 271s Preparing to unpack .../12-rsyslog_8.2312.0-3ubuntu7_ppc64el.deb ... 271s Unpacking rsyslog (8.2312.0-3ubuntu7) over (8.2312.0-3ubuntu3) ... 271s Preparing to unpack .../13-vim-tiny_2%3a9.1.0016-1ubuntu6_ppc64el.deb ... 271s Unpacking vim-tiny (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 271s Preparing to unpack .../14-vim-common_2%3a9.1.0016-1ubuntu6_all.deb ... 271s Unpacking vim-common (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 271s Selecting previously unselected package xdg-user-dirs. 271s Preparing to unpack .../15-xdg-user-dirs_0.18-1_ppc64el.deb ... 271s Unpacking xdg-user-dirs (0.18-1) ... 271s Preparing to unpack .../16-xxd_2%3a9.1.0016-1ubuntu6_ppc64el.deb ... 271s Unpacking xxd (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 271s Preparing to unpack .../17-apparmor_4.0.0-beta3-0ubuntu2_ppc64el.deb ... 271s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 272s Preparing to unpack .../18-ftp_20230507-2build1_all.deb ... 272s Unpacking ftp (20230507-2build1) over (20230507-2) ... 272s Preparing to unpack .../19-inetutils-telnet_2%3a2.5-3ubuntu3_ppc64el.deb ... 272s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ... 272s Preparing to unpack .../20-info_7.1-3build1_ppc64el.deb ... 272s Unpacking info (7.1-3build1) over (7.1-3) ... 272s Preparing to unpack .../21-libusb-1.0-0_2%3a1.0.27-1_ppc64el.deb ... 272s Unpacking libusb-1.0-0:ppc64el (2:1.0.27-1) over (2:1.0.26-1) ... 272s Preparing to unpack .../22-libxmuu1_2%3a1.1.3-3build1_ppc64el.deb ... 272s Unpacking libxmuu1:ppc64el (2:1.1.3-3build1) over (2:1.1.3-3) ... 272s Preparing to unpack .../23-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_ppc64el.deb ... 272s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ... 272s Selecting previously unselected package manpages. 272s Preparing to unpack .../24-manpages_6.05.01-1_all.deb ... 272s Unpacking manpages (6.05.01-1) ... 272s Preparing to unpack .../25-mtr-tiny_0.95-1.1build1_ppc64el.deb ... 272s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ... 272s Preparing to unpack .../26-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_ppc64el.deb ... 272s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 272s Preparing to unpack .../27-plymouth_24.004.60-1ubuntu6_ppc64el.deb ... 272s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 272s Preparing to unpack .../28-telnet_0.17+2.5-3ubuntu3_all.deb ... 272s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ... 272s Preparing to unpack .../29-usb.ids_2024.03.18-1_all.deb ... 272s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ... 272s Preparing to unpack .../30-xz-utils_5.6.0-0.2_ppc64el.deb ... 272s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ... 272s Selecting previously unselected package libllvm18:ppc64el. 272s Preparing to unpack .../31-libllvm18_1%3a18.1.2-1ubuntu2_ppc64el.deb ... 272s Unpacking libllvm18:ppc64el (1:18.1.2-1ubuntu2) ... 273s Selecting previously unselected package libclang-cpp18. 273s Preparing to unpack .../32-libclang-cpp18_1%3a18.1.2-1ubuntu2_ppc64el.deb ... 273s Unpacking libclang-cpp18 (1:18.1.2-1ubuntu2) ... 273s Selecting previously unselected package libbpfcc:ppc64el. 273s Preparing to unpack .../33-libbpfcc_0.29.1+ds-1ubuntu4_ppc64el.deb ... 273s Unpacking libbpfcc:ppc64el (0.29.1+ds-1ubuntu4) ... 273s Selecting previously unselected package python3-bpfcc. 273s Preparing to unpack .../34-python3-bpfcc_0.29.1+ds-1ubuntu4_all.deb ... 273s Unpacking python3-bpfcc (0.29.1+ds-1ubuntu4) ... 273s Selecting previously unselected package ieee-data. 273s Preparing to unpack .../35-ieee-data_20220827.1_all.deb ... 273s Unpacking ieee-data (20220827.1) ... 273s Selecting previously unselected package python3-netaddr. 273s Preparing to unpack .../36-python3-netaddr_0.8.0-2ubuntu1_all.deb ... 273s Unpacking python3-netaddr (0.8.0-2ubuntu1) ... 274s Selecting previously unselected package bpfcc-tools. 274s Preparing to unpack .../37-bpfcc-tools_0.29.1+ds-1ubuntu4_all.deb ... 274s Unpacking bpfcc-tools (0.29.1+ds-1ubuntu4) ... 274s Selecting previously unselected package libclang1-18. 274s Preparing to unpack .../38-libclang1-18_1%3a18.1.2-1ubuntu2_ppc64el.deb ... 274s Unpacking libclang1-18 (1:18.1.2-1ubuntu2) ... 274s Selecting previously unselected package libdw1t64:ppc64el. 274s Preparing to unpack .../39-libdw1t64_0.190-1.1build2_ppc64el.deb ... 274s Unpacking libdw1t64:ppc64el (0.190-1.1build2) ... 274s Selecting previously unselected package bpftrace. 274s Preparing to unpack .../40-bpftrace_0.20.2-1ubuntu1_ppc64el.deb ... 274s Unpacking bpftrace (0.20.2-1ubuntu1) ... 274s Preparing to unpack .../41-cryptsetup-bin_2%3a2.7.0-1ubuntu2_ppc64el.deb ... 274s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 274s Preparing to unpack .../42-dpkg-dev_1.22.6ubuntu5_all.deb ... 274s Unpacking dpkg-dev (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 274s Preparing to unpack .../43-libdpkg-perl_1.22.6ubuntu5_all.deb ... 274s Unpacking libdpkg-perl (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 274s Selecting previously unselected package fonts-dejavu-mono. 274s Preparing to unpack .../44-fonts-dejavu-mono_2.37-8_all.deb ... 274s Unpacking fonts-dejavu-mono (2.37-8) ... 274s Selecting previously unselected package fonts-dejavu-core. 274s Preparing to unpack .../45-fonts-dejavu-core_2.37-8_all.deb ... 274s Unpacking fonts-dejavu-core (2.37-8) ... 274s Selecting previously unselected package fontconfig-config. 274s Preparing to unpack .../46-fontconfig-config_2.15.0-1.1ubuntu1_ppc64el.deb ... 274s Unpacking fontconfig-config (2.15.0-1.1ubuntu1) ... 274s Preparing to unpack .../47-libprotobuf-c1_1.4.1-1ubuntu3_ppc64el.deb ... 274s Unpacking libprotobuf-c1:ppc64el (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ... 274s Preparing to unpack .../48-gnupg-l10n_2.4.4-2ubuntu15_all.deb ... 274s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 274s Preparing to unpack .../49-libibverbs1_50.0-2build1_ppc64el.deb ... 274s Unpacking libibverbs1:ppc64el (50.0-2build1) over (50.0-2) ... 274s Preparing to unpack .../50-ibverbs-providers_50.0-2build1_ppc64el.deb ... 274s Unpacking ibverbs-providers:ppc64el (50.0-2build1) over (50.0-2) ... 275s Preparing to unpack .../51-jq_1.7.1-3_ppc64el.deb ... 275s Unpacking jq (1.7.1-3) over (1.7.1-2) ... 275s Preparing to unpack .../52-libjq1_1.7.1-3_ppc64el.deb ... 275s Unpacking libjq1:ppc64el (1.7.1-3) over (1.7.1-2) ... 275s Selecting previously unselected package libaio1t64:ppc64el. 275s Preparing to unpack .../53-libaio1t64_0.3.113-6_ppc64el.deb ... 275s Unpacking libaio1t64:ppc64el (0.3.113-6) ... 275s Selecting previously unselected package libatm1t64:ppc64el. 275s Preparing to unpack .../54-libatm1t64_1%3a2.5.1-5.1_ppc64el.deb ... 275s Unpacking libatm1t64:ppc64el (1:2.5.1-5.1) ... 275s Selecting previously unselected package libc-dev-bin. 275s Preparing to unpack .../55-libc-dev-bin_2.39-0ubuntu6_ppc64el.deb ... 275s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 275s Selecting previously unselected package libfontconfig1:ppc64el. 275s Preparing to unpack .../56-libfontconfig1_2.15.0-1.1ubuntu1_ppc64el.deb ... 275s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu1) ... 275s Selecting previously unselected package libjpeg-turbo8:ppc64el. 275s Preparing to unpack .../57-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 275s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 275s Selecting previously unselected package libjpeg8:ppc64el. 275s Preparing to unpack .../58-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 275s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 275s Selecting previously unselected package libdeflate0:ppc64el. 275s Preparing to unpack .../59-libdeflate0_1.19-1_ppc64el.deb ... 275s Unpacking libdeflate0:ppc64el (1.19-1) ... 275s Selecting previously unselected package libjbig0:ppc64el. 275s Preparing to unpack .../60-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 275s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 275s Selecting previously unselected package liblerc4:ppc64el. 275s Preparing to unpack .../61-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 275s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 275s Selecting previously unselected package libsharpyuv0:ppc64el. 275s Preparing to unpack .../62-libsharpyuv0_1.3.2-0.4build2_ppc64el.deb ... 275s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4build2) ... 275s Selecting previously unselected package libwebp7:ppc64el. 275s Preparing to unpack .../63-libwebp7_1.3.2-0.4build2_ppc64el.deb ... 275s Unpacking libwebp7:ppc64el (1.3.2-0.4build2) ... 275s Selecting previously unselected package libtiff6:ppc64el. 275s Preparing to unpack .../64-libtiff6_4.5.1+git230720-4ubuntu1_ppc64el.deb ... 275s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu1) ... 275s Selecting previously unselected package libxpm4:ppc64el. 275s Preparing to unpack .../65-libxpm4_1%3a3.5.17-1build1_ppc64el.deb ... 275s Unpacking libxpm4:ppc64el (1:3.5.17-1build1) ... 275s Selecting previously unselected package libgd3:ppc64el. 275s Preparing to unpack .../66-libgd3_2.3.3-9ubuntu3_ppc64el.deb ... 275s Unpacking libgd3:ppc64el (2.3.3-9ubuntu3) ... 275s Selecting previously unselected package libc-devtools. 275s Preparing to unpack .../67-libc-devtools_2.39-0ubuntu6_ppc64el.deb ... 275s Unpacking libc-devtools (2.39-0ubuntu6) ... 275s Selecting previously unselected package linux-libc-dev:ppc64el. 275s Preparing to unpack .../68-linux-libc-dev_6.8.0-20.20_ppc64el.deb ... 275s Unpacking linux-libc-dev:ppc64el (6.8.0-20.20) ... 275s Selecting previously unselected package libcrypt-dev:ppc64el. 275s Preparing to unpack .../69-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ... 275s Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) ... 275s Selecting previously unselected package rpcsvc-proto. 275s Preparing to unpack .../70-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ... 275s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 275s Selecting previously unselected package libc6-dev:ppc64el. 275s Preparing to unpack .../71-libc6-dev_2.39-0ubuntu6_ppc64el.deb ... 275s Unpacking libc6-dev:ppc64el (2.39-0ubuntu6) ... 275s Preparing to unpack .../72-libevent-core-2.1-7_2.1.12-stable-9build1_ppc64el.deb ... 275s Unpacking libevent-core-2.1-7:ppc64el (2.1.12-stable-9build1) over (2.1.12-stable-9) ... 275s Preparing to unpack .../73-libftdi1-2_1.5-6build4_ppc64el.deb ... 275s Unpacking libftdi1-2:ppc64el (1.5-6build4) over (1.5-6build3) ... 275s Preparing to unpack .../74-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ... 275s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 275s Selecting previously unselected package libunwind8:ppc64el. 275s Preparing to unpack .../75-libunwind8_1.6.2-3_ppc64el.deb ... 275s Unpacking libunwind8:ppc64el (1.6.2-3) ... 275s Selecting previously unselected package linux-modules-6.8.0-20-generic. 275s Preparing to unpack .../76-linux-modules-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 275s Unpacking linux-modules-6.8.0-20-generic (6.8.0-20.20) ... 276s Selecting previously unselected package linux-image-6.8.0-20-generic. 276s Preparing to unpack .../77-linux-image-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 276s Unpacking linux-image-6.8.0-20-generic (6.8.0-20.20) ... 276s Selecting previously unselected package linux-modules-extra-6.8.0-20-generic. 276s Preparing to unpack .../78-linux-modules-extra-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 276s Unpacking linux-modules-extra-6.8.0-20-generic (6.8.0-20.20) ... 277s Preparing to unpack .../79-linux-generic_6.8.0-20.20+1_ppc64el.deb ... 277s Unpacking linux-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 277s Preparing to unpack .../80-linux-image-generic_6.8.0-20.20+1_ppc64el.deb ... 277s Unpacking linux-image-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 277s Preparing to unpack .../81-linux-virtual_6.8.0-20.20+1_ppc64el.deb ... 277s Unpacking linux-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 277s Preparing to unpack .../82-linux-image-virtual_6.8.0-20.20+1_ppc64el.deb ... 277s Unpacking linux-image-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 277s Preparing to unpack .../83-linux-headers-virtual_6.8.0-20.20+1_ppc64el.deb ... 277s Unpacking linux-headers-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 277s Selecting previously unselected package linux-headers-6.8.0-20. 277s Preparing to unpack .../84-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ... 277s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ... 281s Selecting previously unselected package linux-headers-6.8.0-20-generic. 281s Preparing to unpack .../85-linux-headers-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 281s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 282s Preparing to unpack .../86-linux-headers-generic_6.8.0-20.20+1_ppc64el.deb ... 282s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 282s Selecting previously unselected package linux-tools-common. 282s Preparing to unpack .../87-linux-tools-common_6.8.0-20.20_all.deb ... 282s Unpacking linux-tools-common (6.8.0-20.20) ... 282s Selecting previously unselected package linux-tools-6.8.0-20. 282s Preparing to unpack .../88-linux-tools-6.8.0-20_6.8.0-20.20_ppc64el.deb ... 282s Unpacking linux-tools-6.8.0-20 (6.8.0-20.20) ... 282s Selecting previously unselected package linux-tools-6.8.0-20-generic. 282s Preparing to unpack .../89-linux-tools-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 282s Unpacking linux-tools-6.8.0-20-generic (6.8.0-20.20) ... 282s Selecting previously unselected package manpages-dev. 282s Preparing to unpack .../90-manpages-dev_6.05.01-1_all.deb ... 282s Unpacking manpages-dev (6.05.01-1) ... 282s Preparing to unpack .../91-python3-distutils_3.12.2-3ubuntu1.1_all.deb ... 283s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 283s Preparing to unpack .../92-python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ... 283s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 283s Preparing to unpack .../93-python3-pyrsistent_0.20.0-1build1_ppc64el.deb ... 283s Unpacking python3-pyrsistent:ppc64el (0.20.0-1build1) over (0.20.0-1) ... 283s Preparing to unpack .../94-python3-typing-extensions_4.10.0-1_all.deb ... 283s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ... 283s Selecting previously unselected package ubuntu-kernel-accessories. 283s Preparing to unpack .../95-ubuntu-kernel-accessories_1.536build1_ppc64el.deb ... 283s Unpacking ubuntu-kernel-accessories (1.536build1) ... 283s Preparing to unpack .../96-kpartx_0.9.4-5ubuntu6_ppc64el.deb ... 283s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ... 283s Setting up pinentry-curses (1.2.1-3ubuntu4) ... 283s Setting up motd-news-config (13ubuntu8) ... 283s Setting up libtext-iconv-perl:ppc64el (1.7-8build2) ... 283s Setting up libtext-charwidth-perl:ppc64el (0.04-11build2) ... 283s Setting up libsharpyuv0:ppc64el (1.3.2-0.4build2) ... 283s Setting up liburcu8t64:ppc64el (0.14.0-3.1) ... 283s Setting up tcpdump (4.99.4-3ubuntu2) ... 283s Setting up libibverbs1:ppc64el (50.0-2build1) ... 283s Setting up systemd-sysv (255.4-1ubuntu5) ... 283s Setting up ubuntu-kernel-accessories (1.536build1) ... 283s Setting up libapparmor1:ppc64el (4.0.0-beta3-0ubuntu2) ... 283s Setting up libatm1t64:ppc64el (1:2.5.1-5.1) ... 283s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 283s Setting up libgdbm6t64:ppc64el (1.23-5.1) ... 283s Setting up bsdextrautils (2.39.3-9ubuntu2) ... 283s Setting up libxpm4:ppc64el (1:3.5.17-1build1) ... 283s Setting up libgdbm-compat4t64:ppc64el (1.23-5.1) ... 283s Setting up xdg-user-dirs (0.18-1) ... 283s Setting up ibverbs-providers:ppc64el (50.0-2build1) ... 283s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ... 283s Setting up libmagic-mgc (1:5.45-3) ... 283s Setting up gawk (1:5.2.1-2build2) ... 283s Setting up libjq1:ppc64el (1.7.1-3) ... 283s Setting up manpages (6.05.01-1) ... 283s Setting up libtirpc-common (1.3.4+ds-1.1) ... 283s Setting up libbrotli1:ppc64el (1.1.0-2build1) ... 283s Setting up libsqlite3-0:ppc64el (3.45.1-1ubuntu1) ... 283s Setting up libsasl2-modules:ppc64el (2.1.28+dfsg1-5ubuntu1) ... 283s Setting up libuv1t64:ppc64el (1.48.0-1.1) ... 283s Setting up libmagic1t64:ppc64el (1:5.45-3) ... 283s Setting up rsyslog (8.2312.0-3ubuntu7) ... 283s info: The user `syslog' is already a member of `adm'. 284s Setting up libpsl5t64:ppc64el (0.21.2-1.1) ... 284s Setting up libnghttp2-14:ppc64el (1.59.0-1build1) ... 284s Setting up libdeflate0:ppc64el (1.19-1) ... 284s Setting up linux-libc-dev:ppc64el (6.8.0-20.20) ... 284s Setting up bc (1.07.1-3ubuntu2) ... 284s Setting up libnss-systemd:ppc64el (255.4-1ubuntu5) ... 284s Setting up krb5-locales (1.20.1-6ubuntu1) ... 284s Setting up libcom-err2:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 284s Setting up file (1:5.45-3) ... 284s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ... 284s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ... 284s Setting up libunwind8:ppc64el (1.6.2-3) ... 284s Setting up libprotobuf-c1:ppc64el (1.4.1-1ubuntu3) ... 284s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ... 284s Setting up xxd (2:9.1.0016-1ubuntu6) ... 284s Setting up libelf1t64:ppc64el (0.190-1.1build2) ... 284s Setting up libkrb5support0:ppc64el (1.20.1-6ubuntu1) ... 284s Setting up libdw1t64:ppc64el (0.190-1.1build2) ... 284s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 284s Setting up eject (2.39.3-9ubuntu2) ... 284s Setting up apparmor (4.0.0-beta3-0ubuntu2) ... 284s Installing new version of config file /etc/apparmor.d/abstractions/authentication ... 284s Installing new version of config file /etc/apparmor.d/abstractions/crypto ... 284s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ... 284s Installing new version of config file /etc/apparmor.d/abstractions/openssl ... 284s Installing new version of config file /etc/apparmor.d/code ... 284s Installing new version of config file /etc/apparmor.d/firefox ... 285s Reloading AppArmor profiles 286s Setting up libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 286s No schema files found: doing nothing. 286s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 286s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 286s Setting up vim-common (2:9.1.0016-1ubuntu6) ... 286s Setting up gcc-13-base:ppc64el (13.2.0-21ubuntu1) ... 286s Setting up libqrtr-glib0:ppc64el (1.2.2-1ubuntu3) ... 286s Setting up libslang2:ppc64el (2.3.3-3build1) ... 286s Setting up libnvme1t64 (1.8-3) ... 286s Setting up mtr-tiny (0.95-1.1build1) ... 286s Setting up gnupg-l10n (2.4.4-2ubuntu15) ... 286s Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build6) ... 286s Setting up libdbus-1-3:ppc64el (1.14.10-4ubuntu2) ... 286s Setting up xz-utils (5.6.0-0.2) ... 286s Setting up perl-modules-5.38 (5.38.2-3.2) ... 286s Setting up libproc2-0:ppc64el (2:4.0.4-4ubuntu2) ... 286s Setting up fonts-dejavu-mono (2.37-8) ... 286s Setting up libpng16-16t64:ppc64el (1.6.43-3) ... 286s Setting up systemd-timesyncd (255.4-1ubuntu5) ... 287s Setting up libevent-core-2.1-7:ppc64el (2.1.12-stable-9build1) ... 287s Setting up libss2:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 287s Setting up usb.ids (2024.03.18-1) ... 287s Setting up sudo (1.9.15p5-3ubuntu3) ... 287s Setting up fonts-dejavu-core (2.37-8) ... 287s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ... 287s Setting up gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) ... 287s Setting up libk5crypto3:ppc64el (1.20.1-6ubuntu1) ... 287s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 287s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ... 287s Setting up libwebp7:ppc64el (1.3.2-0.4build2) ... 287s Setting up libfdisk1:ppc64el (2.39.3-9ubuntu2) ... 287s Setting up libdb5.3t64:ppc64el (5.3.28+dfsg2-6) ... 287s Setting up libdevmapper1.02.1:ppc64el (2:1.02.185-3ubuntu2) ... 287s Setting up libaio1t64:ppc64el (0.3.113-6) ... 287s Setting up python-apt-common (2.7.7) ... 287s Setting up mount (2.39.3-9ubuntu2) ... 287s Setting up dmsetup (2:1.02.185-3ubuntu2) ... 287s Setting up uuid-runtime (2.39.3-9ubuntu2) ... 288s uuidd.service is a disabled or a static unit not running, not starting it. 288s Setting up libmm-glib0:ppc64el (1.23.4-0ubuntu1) ... 288s Setting up groff-base (1.23.0-3build1) ... 288s Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ... 288s Setting up libplymouth5:ppc64el (24.004.60-1ubuntu6) ... 288s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ... 288s Setting up jq (1.7.1-3) ... 288s Setting up procps (2:4.0.4-4ubuntu2) ... 288s Setting up gpgconf (2.4.4-2ubuntu15) ... 288s Setting up libcryptsetup12:ppc64el (2:2.7.0-1ubuntu2) ... 288s Setting up libgirepository-1.0-1:ppc64el (1.79.1-1ubuntu6) ... 288s Setting up libjson-glib-1.0-common (1.8.0-2build1) ... 288s Setting up libkrb5-3:ppc64el (1.20.1-6ubuntu1) ... 288s Setting up libpython3.11-minimal:ppc64el (3.11.8-1build4) ... 288s Setting up libusb-1.0-0:ppc64el (2:1.0.27-1) ... 288s Setting up libperl5.38t64:ppc64el (5.38.2-3.2) ... 288s Setting up tnftp (20230507-2build1) ... 288s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ... 288s Setting up libfido2-1:ppc64el (1.14.0-1build1) ... 288s Setting up libc-dev-bin (2.39-0ubuntu6) ... 288s Setting up openssl (3.0.13-0ubuntu2) ... 288s Setting up linux-modules-6.8.0-20-generic (6.8.0-20.20) ... 291s Setting up linux-tools-common (6.8.0-20.20) ... 291s Setting up readline-common (8.2-4) ... 291s Setting up libxml2:ppc64el (2.9.14+dfsg-1.3ubuntu2) ... 291s Setting up libxmuu1:ppc64el (2:1.1.3-3build1) ... 291s Setting up dbus-bin (1.14.10-4ubuntu2) ... 291s Setting up info (7.1-3build1) ... 291s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ... 291s Setting up gpg (2.4.4-2ubuntu15) ... 291s Setting up libgudev-1.0-0:ppc64el (1:238-3ubuntu2) ... 291s Setting up libpolkit-gobject-1-0:ppc64el (124-1ubuntu1) ... 291s Setting up libbpf1:ppc64el (1:1.3.0-2build1) ... 291s Setting up libmbim-glib4:ppc64el (1.31.2-0ubuntu2) ... 291s Setting up rsync (3.2.7-1build1) ... 292s rsync.service is a disabled or a static unit not running, not starting it. 292s Setting up libudisks2-0:ppc64el (2.10.1-6) ... 292s Setting up libkmod2:ppc64el (31+20240202-2ubuntu4) ... 292s Setting up bolt (0.9.6-2build1) ... 292s bolt.service is a disabled or a static unit not running, not starting it. 292s Setting up libllvm18:ppc64el (1:18.1.2-1ubuntu2) ... 292s Setting up gnupg-utils (2.4.4-2ubuntu15) ... 292s Setting up initramfs-tools-bin (0.142ubuntu23) ... 292s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 292s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ... 292s Setting up python3.11-minimal (3.11.8-1build4) ... 294s Setting up libclang1-18 (1:18.1.2-1ubuntu2) ... 294s Setting up manpages-dev (6.05.01-1) ... 294s Setting up linux-modules-extra-6.8.0-20-generic (6.8.0-20.20) ... 295s Setting up apt-utils (2.7.14) ... 295s Setting up gpg-agent (2.4.4-2ubuntu15) ... 296s Setting up libpython3.12-stdlib:ppc64el (3.12.2-4build3) ... 296s Setting up wget (1.21.4-1ubuntu2) ... 296s Setting up fontconfig-config (2.15.0-1.1ubuntu1) ... 296s Setting up libxmlb2:ppc64el (0.3.15-1build1) ... 296s Setting up libpython3.11-stdlib:ppc64el (3.11.8-1build4) ... 296s Setting up python3.12 (3.12.2-4build3) ... 298s Setting up gpgsm (2.4.4-2ubuntu15) ... 298s Setting up inetutils-telnet (2:2.5-3ubuntu3) ... 298s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ... 298s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ... 298s update-initramfs: deferring update (trigger activated) 298s e2scrub_all.service is a disabled or a static unit not running, not starting it. 298s Setting up linux-tools-6.8.0-20 (6.8.0-20.20) ... 298s Setting up libparted2t64:ppc64el (3.6-3.1build2) ... 298s Setting up linux-headers-generic (6.8.0-20.20+1) ... 298s Setting up dbus-daemon (1.14.10-4ubuntu2) ... 298s Setting up libmbim-proxy (1.31.2-0ubuntu2) ... 298s Setting up vim-tiny (2:9.1.0016-1ubuntu6) ... 298s Setting up kmod (31+20240202-2ubuntu4) ... 299s Setting up libnetplan1:ppc64el (1.0-1) ... 299s Setting up man-db (2.12.0-3build4) ... 299s Updating database of manual pages ... 302s man-db.service is a disabled or a static unit not running, not starting it. 302s Setting up fdisk (2.39.3-9ubuntu2) ... 302s Setting up libjson-glib-1.0-0:ppc64el (1.8.0-2build1) ... 302s Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-5ubuntu1) ... 302s Setting up libftdi1-2:ppc64el (1.5-6build4) ... 302s Setting up perl (5.38.2-3.2) ... 302s Setting up libfreetype6:ppc64el (2.13.2+dfsg-1build2) ... 302s Setting up linux-tools-6.8.0-20-generic (6.8.0-20.20) ... 302s Setting up gir1.2-girepository-2.0:ppc64el (1.79.1-1ubuntu6) ... 302s Setting up dbus (1.14.10-4ubuntu2) ... 302s A reboot is required to replace the running dbus-daemon. 302s Please reboot the system when convenient. 302s Setting up shared-mime-info (2.4-1build1) ... 303s Setting up libblockdev-utils3:ppc64el (3.1.0-1build1) ... 303s Setting up libgssapi-krb5-2:ppc64el (1.20.1-6ubuntu1) ... 303s Setting up udev (255.4-1ubuntu5) ... 304s Setting up ftp (20230507-2build1) ... 304s Setting up keyboxd (2.4.4-2ubuntu15) ... 304s Setting up libdpkg-perl (1.22.6ubuntu5) ... 304s Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-5ubuntu1) ... 304s Setting up libssh-4:ppc64el (0.10.6-2build1) ... 304s Setting up libblockdev-nvme3:ppc64el (3.1.0-1build1) ... 304s Setting up libblockdev-fs3:ppc64el (3.1.0-1build1) ... 304s Setting up ieee-data (20220827.1) ... 304s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu1) ... 304s Setting up kpartx (0.9.4-5ubuntu6) ... 304s Setting up libpam-systemd:ppc64el (255.4-1ubuntu5) ... 304s Setting up libpolkit-agent-1-0:ppc64el (124-1ubuntu1) ... 304s Setting up libc6-dev:ppc64el (2.39-0ubuntu6) ... 304s Setting up libgpgme11t64:ppc64el (1.18.0-4.1ubuntu3) ... 304s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu1) ... 304s Setting up netplan-generator (1.0-1) ... 304s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 304s Setting up initramfs-tools-core (0.142ubuntu23) ... 304s Setting up libclang-cpp18 (1:18.1.2-1ubuntu2) ... 304s Setting up libbpfcc:ppc64el (0.29.1+ds-1ubuntu4) ... 304s Setting up libarchive13t64:ppc64el (3.7.2-1.1ubuntu2) ... 304s Setting up libldap2:ppc64el (2.6.7+dfsg-1~exp1ubuntu6) ... 304s Setting up libpython3-stdlib:ppc64el (3.12.2-0ubuntu1) ... 304s Setting up systemd-resolved (255.4-1ubuntu5) ... 305s Setting up python3.11 (3.11.8-1build4) ... 306s Setting up telnet (0.17+2.5-3ubuntu3) ... 306s Setting up initramfs-tools (0.142ubuntu23) ... 306s update-initramfs: deferring update (trigger activated) 306s Setting up libblockdev-mdraid3:ppc64el (3.1.0-1build1) ... 306s Setting up linux-headers-virtual (6.8.0-20.20+1) ... 306s Setting up libcurl4t64:ppc64el (8.5.0-2ubuntu8) ... 306s Setting up bpftrace (0.20.2-1ubuntu1) ... 306s Setting up bind9-libs:ppc64el (1:9.18.24-0ubuntu3) ... 306s Setting up linux-image-6.8.0-20-generic (6.8.0-20.20) ... 309s I: /boot/vmlinux is now a symlink to vmlinux-6.8.0-20-generic 309s I: /boot/initrd.img is now a symlink to initrd.img-6.8.0-20-generic 309s Setting up libtirpc3t64:ppc64el (1.3.4+ds-1.1) ... 309s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ... 309s Setting up libblockdev-swap3:ppc64el (3.1.0-1build1) ... 309s Setting up plymouth (24.004.60-1ubuntu6) ... 309s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 309s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 316s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 316s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 316s Setting up iproute2 (6.1.0-1ubuntu5) ... 317s Setting up openssh-client (1:9.6p1-3ubuntu11) ... 317s Setting up libgusb2:ppc64el (0.4.8-1build1) ... 317s Setting up btrfs-progs (6.6.3-1.1build1) ... 317s Setting up libblockdev-loop3:ppc64el (3.1.0-1build1) ... 317s Setting up libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu8) ... 317s Setting up parted (3.6-3.1build2) ... 317s Setting up libqmi-glib5:ppc64el (1.35.2-0ubuntu1) ... 317s Setting up python3 (3.12.2-0ubuntu1) ... 317s Setting up libblockdev3:ppc64el (3.1.0-1build1) ... 317s Setting up libjcat1:ppc64el (0.2.0-2build2) ... 317s Setting up multipath-tools (0.9.4-5ubuntu6) ... 318s Setting up dpkg-dev (1.22.6ubuntu5) ... 318s Setting up libblockdev-part3:ppc64el (3.1.0-1build1) ... 318s Setting up dirmngr (2.4.4-2ubuntu15) ... 318s Setting up dbus-user-session (1.14.10-4ubuntu2) ... 318s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ... 318s update-initramfs: deferring update (trigger activated) 318s Setting up python3-cryptography (41.0.7-4build2) ... 318s Setting up python3-gi (3.47.0-3build1) ... 319s Setting up libgd3:ppc64el (2.3.3-9ubuntu3) ... 319s Setting up python3-typing-extensions (4.10.0-1) ... 319s Setting up lsof (4.95.0-1build2) ... 319s Setting up python3-pyrsistent:ppc64el (0.20.0-1build1) ... 319s Setting up python3-netaddr (0.8.0-2ubuntu1) ... 319s Setting up libnsl2:ppc64el (1.3.0-3build2) ... 319s Setting up gnupg (2.4.4-2ubuntu15) ... 319s Setting up python3-netplan (1.0-1) ... 319s Setting up curl (8.5.0-2ubuntu8) ... 319s Setting up libvolume-key1:ppc64el (0.3.12-7build1) ... 319s Setting up linux-image-virtual (6.8.0-20.20+1) ... 319s Setting up bind9-host (1:9.18.24-0ubuntu3) ... 319s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ... 319s Setting up python3-bpfcc (0.29.1+ds-1ubuntu4) ... 320s Setting up libc-devtools (2.39-0ubuntu6) ... 320s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... 320s Setting up python3-distutils (3.12.2-3ubuntu1.1) ... 320s python3.12: can't get files for byte-compilation 320s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ... 320s Setting up linux-image-generic (6.8.0-20.20+1) ... 320s Setting up python3-dbus (1.3.2-5build2) ... 320s Setting up python3-setuptools (68.1.2-2ubuntu1) ... 321s Setting up gpg-wks-client (2.4.4-2ubuntu15) ... 321s Setting up openssh-server (1:9.6p1-3ubuntu11) ... 321s Replacing config file /etc/ssh/sshd_config with new version 323s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket. 324s Setting up linux-generic (6.8.0-20.20+1) ... 324s Setting up libblockdev-crypto3:ppc64el (3.1.0-1build1) ... 324s Setting up python3-gdbm:ppc64el (3.12.2-3ubuntu1.1) ... 324s Setting up python3-apt (2.7.7) ... 324s Setting up libfwupd2:ppc64el (1.9.15-2) ... 324s Setting up python3-yaml (6.0.1-2build1) ... 325s Setting up libqmi-proxy (1.35.2-0ubuntu1) ... 325s Setting up netplan.io (1.0-1) ... 325s Setting up linux-virtual (6.8.0-20.20+1) ... 325s Setting up grub-common (2.12-1ubuntu5) ... 325s Setting up bpfcc-tools (0.29.1+ds-1ubuntu4) ... 325s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ... 325s Setting up ubuntu-pro-client (31.2.2) ... 327s Setting up fwupd (1.9.15-2) ... 328s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 328s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 328s Setting up ubuntu-pro-client-l10n (31.2.2) ... 328s Setting up udisks2 (2.10.1-6) ... 329s Setting up grub2-common (2.12-1ubuntu5) ... 329s Setting up grub-ieee1275-bin (2.12-1ubuntu5) ... 329s Setting up grub-ieee1275 (2.12-1ubuntu5) ... 329s Installing for powerpc-ieee1275 platform. 329s Installation finished. No error reported. 329s Sourcing file `/etc/default/grub' 329s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 329s Generating grub configuration file ... 329s Found linux image: /boot/vmlinux-6.8.0-20-generic 329s Found linux image: /boot/vmlinux-6.8.0-11-generic 329s Found initrd image: /boot/initrd.img-6.8.0-11-generic 329s Warning: os-prober will not be executed to detect other bootable partitions. 329s Systems on them will not be added to the GRUB boot configuration. 329s Check GRUB_DISABLE_OS_PROBER documentation entry. 329s Adding boot menu entry for UEFI Firmware Settings ... 329s done 329s Processing triggers for ufw (0.36.2-5) ... 330s Processing triggers for systemd (255.4-1ubuntu5) ... 330s Processing triggers for debianutils (5.17) ... 330s Processing triggers for install-info (7.1-3build1) ... 330s Processing triggers for libc-bin (2.39-0ubuntu6) ... 330s Processing triggers for initramfs-tools (0.142ubuntu23) ... 330s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 330s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 336s Processing triggers for linux-image-6.8.0-20-generic (6.8.0-20.20) ... 336s /etc/kernel/postinst.d/initramfs-tools: 336s update-initramfs: Generating /boot/initrd.img-6.8.0-20-generic 336s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 342s /etc/kernel/postinst.d/zz-update-grub: 342s Sourcing file `/etc/default/grub' 342s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 342s Generating grub configuration file ... 342s Found linux image: /boot/vmlinux-6.8.0-20-generic 342s Found initrd image: /boot/initrd.img-6.8.0-20-generic 343s Found linux image: /boot/vmlinux-6.8.0-11-generic 343s Found initrd image: /boot/initrd.img-6.8.0-11-generic 343s Warning: os-prober will not be executed to detect other bootable partitions. 343s Systems on them will not be added to the GRUB boot configuration. 343s Check GRUB_DISABLE_OS_PROBER documentation entry. 343s Adding boot menu entry for UEFI Firmware Settings ... 343s done 344s Reading package lists... 344s Building dependency tree... 344s Reading state information... 345s The following packages will be REMOVED: 345s libaio1* libnetplan0* python3-distutils* python3-lib2to3* 345s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 345s After this operation, 1613 kB disk space will be freed. 345s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 112169 files and directories currently installed.) 345s Removing libaio1:ppc64el (0.3.113-5) ... 345s Removing libnetplan0:ppc64el (0.107.1-3) ... 345s Removing python3-distutils (3.12.2-3ubuntu1.1) ... 345s Removing python3-lib2to3 (3.12.2-3ubuntu1.1) ... 345s Processing triggers for libc-bin (2.39-0ubuntu6) ... 345s autopkgtest [15:33:28]: rebooting testbed after setup commands that affected boot 438s autopkgtest [15:35:01]: testbed running kernel: Linux 6.8.0-20-generic #20-Ubuntu SMP Mon Mar 18 11:46:05 UTC 2024 440s autopkgtest [15:35:03]: @@@@@@@@@@@@@@@@@@@@ apt-source htslib 443s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe htslib 1.19+ds-1.1build2 (dsc) [2584 B] 443s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe htslib 1.19+ds-1.1build2 (tar) [1522 kB] 443s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe htslib 1.19+ds-1.1build2 (diff) [21.4 kB] 443s gpgv: Signature made Sat Mar 16 06:59:33 2024 UTC 443s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 443s gpgv: issuer "steve.langasek@ubuntu.com" 443s gpgv: Can't check signature: No public key 443s dpkg-source: warning: cannot verify inline signature for ./htslib_1.19+ds-1.1build2.dsc: no acceptable signature found 444s autopkgtest [15:35:07]: testing package htslib version 1.19+ds-1.1build2 444s autopkgtest [15:35:07]: build not needed 445s autopkgtest [15:35:08]: test run-unit-test: preparing testbed 446s Reading package lists... 446s Building dependency tree... 446s Reading state information... 447s Starting pkgProblemResolver with broken count: 0 447s Starting 2 pkgProblemResolver with broken count: 0 447s Done 447s The following additional packages will be installed: 447s autoconf automake autopoint autotools-dev build-essential cpp cpp-13 447s cpp-13-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper debugedit 447s dh-autoreconf dh-strip-nondeterminism dwz g++ g++-13 447s g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-13 447s gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext htslib-test 447s intltool-debian libarchive-zip-perl libasan8 libatomic1 libbz2-dev libcc1-0 447s libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev 447s libfile-stripnondeterminism-perl libgcc-13-dev libgomp1 libhts-dev 447s libhts3t64 libhtscodecs-dev libhtscodecs2 libisl23 libitm1 liblsan0 447s liblzma-dev libmpc3 libquadmath0 libssl-dev libstdc++-13-dev 447s libsub-override-perl libtool libtsan2 libubsan1 m4 po-debconf tabix 447s zlib1g-dev 447s Suggested packages: 447s autoconf-archive gnu-standards autoconf-doc cpp-doc gcc-13-locales 447s cpp-13-doc dh-make gcc-13-doc gcc-multilib flex bison gdb gcc-doc 447s gdb-powerpc64le-linux-gnu gettext-doc libasprintf-dev libgettextpo-dev 447s libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev 447s libssh2-1-dev pkg-config liblzma-doc libssl-doc libstdc++-13-doc libtool-doc 447s gfortran | fortran95-compiler gcj-jdk m4-doc libmail-box-perl 447s Recommended packages: 447s bzip2-doc libarchive-cpio-perl libltdl-dev libmail-sendmail-perl 447s The following NEW packages will be installed: 447s autoconf automake autopkgtest-satdep autopoint autotools-dev build-essential 447s cpp cpp-13 cpp-13-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu debhelper 447s debugedit dh-autoreconf dh-strip-nondeterminism dwz g++ g++-13 447s g++-13-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc gcc-13 447s gcc-13-powerpc64le-linux-gnu gcc-powerpc64le-linux-gnu gettext htslib-test 447s intltool-debian libarchive-zip-perl libasan8 libatomic1 libbz2-dev libcc1-0 447s libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev 447s libfile-stripnondeterminism-perl libgcc-13-dev libgomp1 libhts-dev 447s libhts3t64 libhtscodecs-dev libhtscodecs2 libisl23 libitm1 liblsan0 447s liblzma-dev libmpc3 libquadmath0 libssl-dev libstdc++-13-dev 447s libsub-override-perl libtool libtsan2 libubsan1 m4 po-debconf tabix 447s zlib1g-dev 447s 0 upgraded, 57 newly installed, 0 to remove and 0 not upgraded. 447s Need to get 78.3 MB/78.3 MB of archives. 447s After this operation, 283 MB of additional disk space will be used. 447s Get:1 /tmp/autopkgtest.twgBPe/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [832 B] 447s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el m4 ppc64el 1.4.19-4 [275 kB] 448s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el autoconf all 2.71-3 [339 kB] 448s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el autotools-dev all 20220109.1 [44.9 kB] 448s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el automake all 1:1.16.5-1.3ubuntu1 [558 kB] 448s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el autopoint all 0.21-14ubuntu1 [422 kB] 448s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libisl23 ppc64el 0.26-3 [864 kB] 448s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libmpc3 ppc64el 1.3.1-1 [61.2 kB] 448s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cpp-13-powerpc64le-linux-gnu ppc64el 13.2.0-21ubuntu1 [10.7 MB] 449s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cpp-13 ppc64el 13.2.0-21ubuntu1 [1034 B] 449s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [5330 B] 449s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el cpp ppc64el 4:13.2.0-7ubuntu1 [22.5 kB] 449s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcc1-0 ppc64el 14-20240315-1ubuntu1 [48.1 kB] 449s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgomp1 ppc64el 14-20240315-1ubuntu1 [161 kB] 449s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libitm1 ppc64el 14-20240315-1ubuntu1 [32.2 kB] 449s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libatomic1 ppc64el 14-20240315-1ubuntu1 [10.7 kB] 449s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libasan8 ppc64el 14-20240315-1ubuntu1 [2973 kB] 449s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblsan0 ppc64el 14-20240315-1ubuntu1 [1325 kB] 449s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtsan2 ppc64el 14-20240315-1ubuntu1 [2702 kB] 449s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libubsan1 ppc64el 14-20240315-1ubuntu1 [1193 kB] 449s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libquadmath0 ppc64el 14-20240315-1ubuntu1 [158 kB] 449s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-13-dev ppc64el 13.2.0-21ubuntu1 [1579 kB] 449s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13-powerpc64le-linux-gnu ppc64el 13.2.0-21ubuntu1 [20.6 MB] 450s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13 ppc64el 13.2.0-21ubuntu1 [479 kB] 450s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [1224 B] 450s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el gcc ppc64el 4:13.2.0-7ubuntu1 [5022 B] 450s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++-13-dev ppc64el 13.2.0-21ubuntu1 [2510 kB] 450s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el g++-13-powerpc64le-linux-gnu ppc64el 13.2.0-21ubuntu1 [12.1 MB] 450s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el g++-13 ppc64el 13.2.0-21ubuntu1 [14.5 kB] 450s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el g++-powerpc64le-linux-gnu ppc64el 4:13.2.0-7ubuntu1 [968 B] 450s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el g++ ppc64el 4:13.2.0-7ubuntu1 [1086 B] 450s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el build-essential ppc64el 12.10ubuntu1 [4936 B] 450s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el libdebhelper-perl all 13.14.1ubuntu5 [89.8 kB] 450s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el libtool all 2.4.7-7 [166 kB] 450s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-autoreconf all 20 [16.1 kB] 450s Get:36 http://ftpmaster.internal/ubuntu noble/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] 450s Get:37 http://ftpmaster.internal/ubuntu noble/main ppc64el libsub-override-perl all 0.10-1 [10.0 kB] 450s Get:38 http://ftpmaster.internal/ubuntu noble/main ppc64el libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] 450s Get:39 http://ftpmaster.internal/ubuntu noble/main ppc64el dh-strip-nondeterminism all 1.13.1-1 [5362 B] 450s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el debugedit ppc64el 1:5.0-5build1 [51.4 kB] 450s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dwz ppc64el 0.15-1build5 [142 kB] 450s Get:42 http://ftpmaster.internal/ubuntu noble/main ppc64el gettext ppc64el 0.21-14ubuntu1 [979 kB] 450s Get:43 http://ftpmaster.internal/ubuntu noble/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] 450s Get:44 http://ftpmaster.internal/ubuntu noble/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] 450s Get:45 http://ftpmaster.internal/ubuntu noble/main ppc64el debhelper all 13.14.1ubuntu5 [869 kB] 451s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el htslib-test all 1.19+ds-1.1build2 [1141 kB] 451s Get:47 http://ftpmaster.internal/ubuntu noble/main ppc64el libbz2-dev ppc64el 1.0.8-5ubuntu1 [51.2 kB] 451s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4-gnutls-dev ppc64el 8.5.0-2ubuntu8 [530 kB] 451s Get:49 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate-dev ppc64el 1.19-1 [69.7 kB] 451s Get:50 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 451s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhts3t64 ppc64el 1.19+ds-1.1build2 [569 kB] 451s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblzma-dev ppc64el 5.6.0-0.2 [208 kB] 451s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g-dev ppc64el 1:1.3.dfsg-3.1ubuntu1 [902 kB] 451s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhts-dev ppc64el 1.19+ds-1.1build2 [6340 kB] 451s Get:55 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs-dev ppc64el 1.6.0-1 [3007 kB] 451s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl-dev ppc64el 3.0.13-0ubuntu2 [2667 kB] 451s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el tabix ppc64el 1.19+ds-1.1build2 [710 kB] 451s Fetched 78.3 MB in 4s (19.5 MB/s) 451s Selecting previously unselected package m4. 452s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 111945 files and directories currently installed.) 452s Preparing to unpack .../00-m4_1.4.19-4_ppc64el.deb ... 452s Unpacking m4 (1.4.19-4) ... 452s Selecting previously unselected package autoconf. 452s Preparing to unpack .../01-autoconf_2.71-3_all.deb ... 452s Unpacking autoconf (2.71-3) ... 452s Selecting previously unselected package autotools-dev. 452s Preparing to unpack .../02-autotools-dev_20220109.1_all.deb ... 452s Unpacking autotools-dev (20220109.1) ... 452s Selecting previously unselected package automake. 452s Preparing to unpack .../03-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 452s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 452s Selecting previously unselected package autopoint. 452s Preparing to unpack .../04-autopoint_0.21-14ubuntu1_all.deb ... 452s Unpacking autopoint (0.21-14ubuntu1) ... 452s Selecting previously unselected package libisl23:ppc64el. 452s Preparing to unpack .../05-libisl23_0.26-3_ppc64el.deb ... 452s Unpacking libisl23:ppc64el (0.26-3) ... 452s Selecting previously unselected package libmpc3:ppc64el. 452s Preparing to unpack .../06-libmpc3_1.3.1-1_ppc64el.deb ... 452s Unpacking libmpc3:ppc64el (1.3.1-1) ... 452s Selecting previously unselected package cpp-13-powerpc64le-linux-gnu. 452s Preparing to unpack .../07-cpp-13-powerpc64le-linux-gnu_13.2.0-21ubuntu1_ppc64el.deb ... 452s Unpacking cpp-13-powerpc64le-linux-gnu (13.2.0-21ubuntu1) ... 452s Selecting previously unselected package cpp-13. 452s Preparing to unpack .../08-cpp-13_13.2.0-21ubuntu1_ppc64el.deb ... 452s Unpacking cpp-13 (13.2.0-21ubuntu1) ... 452s Selecting previously unselected package cpp-powerpc64le-linux-gnu. 452s Preparing to unpack .../09-cpp-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 452s Unpacking cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 452s Selecting previously unselected package cpp. 452s Preparing to unpack .../10-cpp_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 452s Unpacking cpp (4:13.2.0-7ubuntu1) ... 452s Selecting previously unselected package libcc1-0:ppc64el. 452s Preparing to unpack .../11-libcc1-0_14-20240315-1ubuntu1_ppc64el.deb ... 452s Unpacking libcc1-0:ppc64el (14-20240315-1ubuntu1) ... 452s Selecting previously unselected package libgomp1:ppc64el. 452s Preparing to unpack .../12-libgomp1_14-20240315-1ubuntu1_ppc64el.deb ... 452s Unpacking libgomp1:ppc64el (14-20240315-1ubuntu1) ... 452s Selecting previously unselected package libitm1:ppc64el. 452s Preparing to unpack .../13-libitm1_14-20240315-1ubuntu1_ppc64el.deb ... 452s Unpacking libitm1:ppc64el (14-20240315-1ubuntu1) ... 452s Selecting previously unselected package libatomic1:ppc64el. 452s Preparing to unpack .../14-libatomic1_14-20240315-1ubuntu1_ppc64el.deb ... 452s Unpacking libatomic1:ppc64el (14-20240315-1ubuntu1) ... 452s Selecting previously unselected package libasan8:ppc64el. 452s Preparing to unpack .../15-libasan8_14-20240315-1ubuntu1_ppc64el.deb ... 452s Unpacking libasan8:ppc64el (14-20240315-1ubuntu1) ... 452s Selecting previously unselected package liblsan0:ppc64el. 452s Preparing to unpack .../16-liblsan0_14-20240315-1ubuntu1_ppc64el.deb ... 452s Unpacking liblsan0:ppc64el (14-20240315-1ubuntu1) ... 452s Selecting previously unselected package libtsan2:ppc64el. 452s Preparing to unpack .../17-libtsan2_14-20240315-1ubuntu1_ppc64el.deb ... 452s Unpacking libtsan2:ppc64el (14-20240315-1ubuntu1) ... 452s Selecting previously unselected package libubsan1:ppc64el. 452s Preparing to unpack .../18-libubsan1_14-20240315-1ubuntu1_ppc64el.deb ... 452s Unpacking libubsan1:ppc64el (14-20240315-1ubuntu1) ... 452s Selecting previously unselected package libquadmath0:ppc64el. 453s Preparing to unpack .../19-libquadmath0_14-20240315-1ubuntu1_ppc64el.deb ... 453s Unpacking libquadmath0:ppc64el (14-20240315-1ubuntu1) ... 453s Selecting previously unselected package libgcc-13-dev:ppc64el. 453s Preparing to unpack .../20-libgcc-13-dev_13.2.0-21ubuntu1_ppc64el.deb ... 453s Unpacking libgcc-13-dev:ppc64el (13.2.0-21ubuntu1) ... 453s Selecting previously unselected package gcc-13-powerpc64le-linux-gnu. 453s Preparing to unpack .../21-gcc-13-powerpc64le-linux-gnu_13.2.0-21ubuntu1_ppc64el.deb ... 453s Unpacking gcc-13-powerpc64le-linux-gnu (13.2.0-21ubuntu1) ... 453s Selecting previously unselected package gcc-13. 453s Preparing to unpack .../22-gcc-13_13.2.0-21ubuntu1_ppc64el.deb ... 453s Unpacking gcc-13 (13.2.0-21ubuntu1) ... 453s Selecting previously unselected package gcc-powerpc64le-linux-gnu. 453s Preparing to unpack .../23-gcc-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 453s Unpacking gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 453s Selecting previously unselected package gcc. 453s Preparing to unpack .../24-gcc_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 453s Unpacking gcc (4:13.2.0-7ubuntu1) ... 453s Selecting previously unselected package libstdc++-13-dev:ppc64el. 453s Preparing to unpack .../25-libstdc++-13-dev_13.2.0-21ubuntu1_ppc64el.deb ... 453s Unpacking libstdc++-13-dev:ppc64el (13.2.0-21ubuntu1) ... 453s Selecting previously unselected package g++-13-powerpc64le-linux-gnu. 453s Preparing to unpack .../26-g++-13-powerpc64le-linux-gnu_13.2.0-21ubuntu1_ppc64el.deb ... 453s Unpacking g++-13-powerpc64le-linux-gnu (13.2.0-21ubuntu1) ... 454s Selecting previously unselected package g++-13. 454s Preparing to unpack .../27-g++-13_13.2.0-21ubuntu1_ppc64el.deb ... 454s Unpacking g++-13 (13.2.0-21ubuntu1) ... 454s Selecting previously unselected package g++-powerpc64le-linux-gnu. 454s Preparing to unpack .../28-g++-powerpc64le-linux-gnu_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 454s Unpacking g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 454s Selecting previously unselected package g++. 454s Preparing to unpack .../29-g++_4%3a13.2.0-7ubuntu1_ppc64el.deb ... 454s Unpacking g++ (4:13.2.0-7ubuntu1) ... 454s Selecting previously unselected package build-essential. 454s Preparing to unpack .../30-build-essential_12.10ubuntu1_ppc64el.deb ... 454s Unpacking build-essential (12.10ubuntu1) ... 454s Selecting previously unselected package libdebhelper-perl. 454s Preparing to unpack .../31-libdebhelper-perl_13.14.1ubuntu5_all.deb ... 454s Unpacking libdebhelper-perl (13.14.1ubuntu5) ... 454s Selecting previously unselected package libtool. 454s Preparing to unpack .../32-libtool_2.4.7-7_all.deb ... 454s Unpacking libtool (2.4.7-7) ... 454s Selecting previously unselected package dh-autoreconf. 454s Preparing to unpack .../33-dh-autoreconf_20_all.deb ... 454s Unpacking dh-autoreconf (20) ... 454s Selecting previously unselected package libarchive-zip-perl. 454s Preparing to unpack .../34-libarchive-zip-perl_1.68-1_all.deb ... 454s Unpacking libarchive-zip-perl (1.68-1) ... 454s Selecting previously unselected package libsub-override-perl. 454s Preparing to unpack .../35-libsub-override-perl_0.10-1_all.deb ... 454s Unpacking libsub-override-perl (0.10-1) ... 454s Selecting previously unselected package libfile-stripnondeterminism-perl. 454s Preparing to unpack .../36-libfile-stripnondeterminism-perl_1.13.1-1_all.deb ... 454s Unpacking libfile-stripnondeterminism-perl (1.13.1-1) ... 454s Selecting previously unselected package dh-strip-nondeterminism. 454s Preparing to unpack .../37-dh-strip-nondeterminism_1.13.1-1_all.deb ... 454s Unpacking dh-strip-nondeterminism (1.13.1-1) ... 454s Selecting previously unselected package debugedit. 454s Preparing to unpack .../38-debugedit_1%3a5.0-5build1_ppc64el.deb ... 454s Unpacking debugedit (1:5.0-5build1) ... 454s Selecting previously unselected package dwz. 454s Preparing to unpack .../39-dwz_0.15-1build5_ppc64el.deb ... 454s Unpacking dwz (0.15-1build5) ... 454s Selecting previously unselected package gettext. 454s Preparing to unpack .../40-gettext_0.21-14ubuntu1_ppc64el.deb ... 454s Unpacking gettext (0.21-14ubuntu1) ... 454s Selecting previously unselected package intltool-debian. 454s Preparing to unpack .../41-intltool-debian_0.35.0+20060710.6_all.deb ... 454s Unpacking intltool-debian (0.35.0+20060710.6) ... 454s Selecting previously unselected package po-debconf. 454s Preparing to unpack .../42-po-debconf_1.0.21+nmu1_all.deb ... 454s Unpacking po-debconf (1.0.21+nmu1) ... 454s Selecting previously unselected package debhelper. 454s Preparing to unpack .../43-debhelper_13.14.1ubuntu5_all.deb ... 454s Unpacking debhelper (13.14.1ubuntu5) ... 454s Selecting previously unselected package htslib-test. 454s Preparing to unpack .../44-htslib-test_1.19+ds-1.1build2_all.deb ... 454s Unpacking htslib-test (1.19+ds-1.1build2) ... 454s Selecting previously unselected package libbz2-dev:ppc64el. 454s Preparing to unpack .../45-libbz2-dev_1.0.8-5ubuntu1_ppc64el.deb ... 454s Unpacking libbz2-dev:ppc64el (1.0.8-5ubuntu1) ... 454s Selecting previously unselected package libcurl4-gnutls-dev:ppc64el. 454s Preparing to unpack .../46-libcurl4-gnutls-dev_8.5.0-2ubuntu8_ppc64el.deb ... 454s Unpacking libcurl4-gnutls-dev:ppc64el (8.5.0-2ubuntu8) ... 454s Selecting previously unselected package libdeflate-dev:ppc64el. 454s Preparing to unpack .../47-libdeflate-dev_1.19-1_ppc64el.deb ... 454s Unpacking libdeflate-dev:ppc64el (1.19-1) ... 454s Selecting previously unselected package libhtscodecs2:ppc64el. 454s Preparing to unpack .../48-libhtscodecs2_1.6.0-1_ppc64el.deb ... 454s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 454s Selecting previously unselected package libhts3t64:ppc64el. 454s Preparing to unpack .../49-libhts3t64_1.19+ds-1.1build2_ppc64el.deb ... 454s Unpacking libhts3t64:ppc64el (1.19+ds-1.1build2) ... 454s Selecting previously unselected package liblzma-dev:ppc64el. 454s Preparing to unpack .../50-liblzma-dev_5.6.0-0.2_ppc64el.deb ... 454s Unpacking liblzma-dev:ppc64el (5.6.0-0.2) ... 454s Selecting previously unselected package zlib1g-dev:ppc64el. 454s Preparing to unpack .../51-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu1_ppc64el.deb ... 454s Unpacking zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu1) ... 455s Selecting previously unselected package libhts-dev:ppc64el. 455s Preparing to unpack .../52-libhts-dev_1.19+ds-1.1build2_ppc64el.deb ... 455s Unpacking libhts-dev:ppc64el (1.19+ds-1.1build2) ... 455s Selecting previously unselected package libhtscodecs-dev:ppc64el. 455s Preparing to unpack .../53-libhtscodecs-dev_1.6.0-1_ppc64el.deb ... 455s Unpacking libhtscodecs-dev:ppc64el (1.6.0-1) ... 455s Selecting previously unselected package libssl-dev:ppc64el. 455s Preparing to unpack .../54-libssl-dev_3.0.13-0ubuntu2_ppc64el.deb ... 455s Unpacking libssl-dev:ppc64el (3.0.13-0ubuntu2) ... 455s Selecting previously unselected package tabix. 455s Preparing to unpack .../55-tabix_1.19+ds-1.1build2_ppc64el.deb ... 455s Unpacking tabix (1.19+ds-1.1build2) ... 455s Selecting previously unselected package autopkgtest-satdep. 455s Preparing to unpack .../56-1-autopkgtest-satdep.deb ... 455s Unpacking autopkgtest-satdep (0) ... 455s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 455s Setting up libarchive-zip-perl (1.68-1) ... 455s Setting up htslib-test (1.19+ds-1.1build2) ... 455s Setting up libdebhelper-perl (13.14.1ubuntu5) ... 455s Setting up m4 (1.4.19-4) ... 455s Setting up libgomp1:ppc64el (14-20240315-1ubuntu1) ... 455s Setting up libcurl4-gnutls-dev:ppc64el (8.5.0-2ubuntu8) ... 455s Setting up libhtscodecs-dev:ppc64el (1.6.0-1) ... 455s Setting up autotools-dev (20220109.1) ... 455s Setting up libquadmath0:ppc64el (14-20240315-1ubuntu1) ... 455s Setting up libssl-dev:ppc64el (3.0.13-0ubuntu2) ... 455s Setting up libmpc3:ppc64el (1.3.1-1) ... 455s Setting up libatomic1:ppc64el (14-20240315-1ubuntu1) ... 455s Setting up autopoint (0.21-14ubuntu1) ... 455s Setting up autoconf (2.71-3) ... 455s Setting up liblzma-dev:ppc64el (5.6.0-0.2) ... 455s Setting up libubsan1:ppc64el (14-20240315-1ubuntu1) ... 455s Setting up zlib1g-dev:ppc64el (1:1.3.dfsg-3.1ubuntu1) ... 455s Setting up dwz (0.15-1build5) ... 455s Setting up libasan8:ppc64el (14-20240315-1ubuntu1) ... 455s Setting up debugedit (1:5.0-5build1) ... 455s Setting up libhts3t64:ppc64el (1.19+ds-1.1build2) ... 455s Setting up libsub-override-perl (0.10-1) ... 455s Setting up libtsan2:ppc64el (14-20240315-1ubuntu1) ... 455s Setting up libisl23:ppc64el (0.26-3) ... 455s Setting up cpp-13-powerpc64le-linux-gnu (13.2.0-21ubuntu1) ... 455s Setting up libdeflate-dev:ppc64el (1.19-1) ... 455s Setting up tabix (1.19+ds-1.1build2) ... 455s Setting up libcc1-0:ppc64el (14-20240315-1ubuntu1) ... 455s Setting up liblsan0:ppc64el (14-20240315-1ubuntu1) ... 455s Setting up libitm1:ppc64el (14-20240315-1ubuntu1) ... 455s Setting up cpp-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 455s Setting up libbz2-dev:ppc64el (1.0.8-5ubuntu1) ... 455s Setting up automake (1:1.16.5-1.3ubuntu1) ... 455s update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode 455s Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... 455s Setting up gettext (0.21-14ubuntu1) ... 455s Setting up cpp-13 (13.2.0-21ubuntu1) ... 455s Setting up libhts-dev:ppc64el (1.19+ds-1.1build2) ... 455s Setting up intltool-debian (0.35.0+20060710.6) ... 455s Setting up dh-strip-nondeterminism (1.13.1-1) ... 455s Setting up libgcc-13-dev:ppc64el (13.2.0-21ubuntu1) ... 455s Setting up cpp (4:13.2.0-7ubuntu1) ... 455s Setting up libstdc++-13-dev:ppc64el (13.2.0-21ubuntu1) ... 455s Setting up po-debconf (1.0.21+nmu1) ... 455s Setting up gcc-13-powerpc64le-linux-gnu (13.2.0-21ubuntu1) ... 455s Setting up gcc-13 (13.2.0-21ubuntu1) ... 455s Setting up libtool (2.4.7-7) ... 455s Setting up g++-13-powerpc64le-linux-gnu (13.2.0-21ubuntu1) ... 455s Setting up dh-autoreconf (20) ... 455s Setting up gcc-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 455s Setting up g++-powerpc64le-linux-gnu (4:13.2.0-7ubuntu1) ... 455s Setting up g++-13 (13.2.0-21ubuntu1) ... 455s Setting up debhelper (13.14.1ubuntu5) ... 455s Setting up gcc (4:13.2.0-7ubuntu1) ... 455s Setting up g++ (4:13.2.0-7ubuntu1) ... 455s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 455s Setting up build-essential (12.10ubuntu1) ... 455s Setting up autopkgtest-satdep (0) ... 455s Processing triggers for man-db (2.12.0-3build4) ... 457s Processing triggers for install-info (7.1-3build1) ... 457s Processing triggers for libc-bin (2.39-0ubuntu6) ... 460s (Reading database ... 115244 files and directories currently installed.) 460s Removing autopkgtest-satdep (0) ... 461s autopkgtest [15:35:24]: test run-unit-test: [----------------------- 461s + pkg=htslib 461s + '[' /tmp/autopkgtest.twgBPe/autopkgtest_tmp = '' ']' 461s + cp -aL /usr/share/htslib-test/Makefile /usr/share/htslib-test/annot-tsv.c /usr/share/htslib-test/bcf_sr_sort.c /usr/share/htslib-test/bcf_sr_sort.h /usr/share/htslib-test/bgzf.c /usr/share/htslib-test/bgzip.c /usr/share/htslib-test/config.h /usr/share/htslib-test/config.mk /usr/share/htslib-test/config_vars.h /usr/share/htslib-test/cram /usr/share/htslib-test/errmod.c /usr/share/htslib-test/faidx.c /usr/share/htslib-test/fuzz_settings.h /usr/share/htslib-test/header.c /usr/share/htslib-test/header.h /usr/share/htslib-test/hfile.c /usr/share/htslib-test/hfile_gcs.c /usr/share/htslib-test/hfile_internal.h /usr/share/htslib-test/hfile_libcurl.c /usr/share/htslib-test/hfile_s3.c /usr/share/htslib-test/hfile_s3_write.c /usr/share/htslib-test/hts.c /usr/share/htslib-test/hts_expr.c /usr/share/htslib-test/hts_internal.h /usr/share/htslib-test/hts_os.c /usr/share/htslib-test/hts_time_funcs.h /usr/share/htslib-test/htscodecs.mk /usr/share/htslib-test/htscodecs_bundled.mk /usr/share/htslib-test/htscodecs_external.mk /usr/share/htslib-test/htsfile.c /usr/share/htslib-test/htslib.mk /usr/share/htslib-test/htslib_static.mk /usr/share/htslib-test/htslib_vars.mk /usr/share/htslib-test/kfunc.c /usr/share/htslib-test/kstring.c /usr/share/htslib-test/md5.c /usr/share/htslib-test/multipart.c /usr/share/htslib-test/os /usr/share/htslib-test/plugin.c /usr/share/htslib-test/probaln.c /usr/share/htslib-test/realn.c /usr/share/htslib-test/regidx.c /usr/share/htslib-test/region.c /usr/share/htslib-test/sam.c /usr/share/htslib-test/sam_internal.h /usr/share/htslib-test/sam_mods.c /usr/share/htslib-test/synced_bcf_reader.c /usr/share/htslib-test/tabix.c /usr/share/htslib-test/tbx.c /usr/share/htslib-test/test /usr/share/htslib-test/textutils.c /usr/share/htslib-test/textutils_internal.h /usr/share/htslib-test/thread_pool.c /usr/share/htslib-test/thread_pool_internal.h /usr/share/htslib-test/vcf.c /usr/share/htslib-test/vcf_sweep.c /usr/share/htslib-test/vcfutils.c /usr/share/htslib-test/version.h /usr/share/htslib-test/version.sh /tmp/autopkgtest.twgBPe/autopkgtest_tmp 461s + cp -aL htslib.pc.in /tmp/autopkgtest.twgBPe/autopkgtest_tmp 461s + cp -aL htslib.map /tmp/autopkgtest.twgBPe/autopkgtest_tmp 461s + cd /tmp/autopkgtest.twgBPe/autopkgtest_tmp 461s + sed -i 's#\$(HTSPREFIX)#/usr/include/#g' htslib_vars.mk 461s + sed -i 's#\$(HTSLIB)#/usr/include/#g' htslib.mk 461s + CFLAGS='-O2 -fno-strict-aliasing -fno-code-hoisting' 461s + grep sse /proc/cpuinfo 461s + export CFLAGS 461s + make -e check 461s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o kfunc.o kfunc.c 461s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o kstring.o kstring.c 462s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o bcf_sr_sort.o bcf_sr_sort.c 463s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o bgzf.o bgzf.c 464s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o errmod.o errmod.c 464s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o faidx.o faidx.c 464s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o header.o header.c 466s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o hfile.o hfile.c 467s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o hts.o hts.c 469s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o hts_expr.o hts_expr.c 470s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o hts_os.o hts_os.c 470s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o md5.o md5.c 470s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o multipart.o multipart.c 470s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o probaln.o probaln.c 471s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o realn.o realn.c 471s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o regidx.o regidx.c 471s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o region.o region.c 472s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o sam.o sam.c 476s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o sam_mods.o sam_mods.c 476s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o synced_bcf_reader.o synced_bcf_reader.c 477s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o vcf_sweep.o vcf_sweep.c 477s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o tbx.o tbx.c 477s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o textutils.o textutils.c 477s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o thread_pool.o thread_pool.c 478s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o vcf.o vcf.c 483s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o vcfutils.o vcfutils.c 484s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_codecs.o cram/cram_codecs.c 486s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_decode.o cram/cram_decode.c 488s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_encode.o cram/cram_encode.c 490s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_external.o cram/cram_external.c 490s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_index.o cram/cram_index.c 491s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_io.o cram/cram_io.c 493s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/cram_stats.o cram/cram_stats.c 494s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/mFILE.o cram/mFILE.c 494s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/open_trace_file.o cram/open_trace_file.c 494s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/pooled_alloc.o cram/pooled_alloc.c 494s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o cram/string_alloc.o cram/string_alloc.c 494s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/x86_64-linux-gnu/htslib\" -c -o plugin.o plugin.c 494s ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o plugin.o 494s ranlib libhts.a 494s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o kfunc.pico kfunc.c 494s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o kstring.pico kstring.c 495s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o bcf_sr_sort.pico bcf_sr_sort.c 496s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o bgzf.pico bgzf.c 497s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o errmod.pico errmod.c 497s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o faidx.pico faidx.c 497s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o header.pico header.c 499s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hfile.pico hfile.c 500s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hts.pico hts.c 502s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hts_expr.pico hts_expr.c 503s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hts_os.pico hts_os.c 503s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o md5.pico md5.c 503s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o multipart.pico multipart.c 503s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o probaln.pico probaln.c 504s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o realn.pico realn.c 504s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o regidx.pico regidx.c 504s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o region.pico region.c 505s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o sam.pico sam.c 508s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o sam_mods.pico sam_mods.c 509s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o synced_bcf_reader.pico synced_bcf_reader.c 510s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o vcf_sweep.pico vcf_sweep.c 510s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o tbx.pico tbx.c 510s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o textutils.pico textutils.c 510s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o thread_pool.pico thread_pool.c 510s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o vcf.pico vcf.c 515s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o vcfutils.pico vcfutils.c 516s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_codecs.pico cram/cram_codecs.c 518s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_decode.pico cram/cram_decode.c 520s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_encode.pico cram/cram_encode.c 522s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_external.pico cram/cram_external.c 523s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_index.pico cram/cram_index.c 523s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_io.pico cram/cram_io.c 525s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/cram_stats.pico cram/cram_stats.c 526s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/mFILE.pico cram/mFILE.c 526s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/open_trace_file.pico cram/open_trace_file.c 526s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/pooled_alloc.pico cram/pooled_alloc.c 526s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o cram/string_alloc.pico cram/string_alloc.c 526s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -DPLUGINPATH=\"/usr/local/lib/htslib:/usr/local/libexec/htslib:/usr/lib/x86_64-linux-gnu/htslib\" -fPIC -c -o plugin.pico plugin.c 526s gcc -shared -Wl,-soname,libhts.so.3 -Wl,-version-script,htslib.map -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o libhts.so kfunc.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico header.pico hfile.pico hts.pico hts_expr.pico hts_os.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico region.pico sam.pico sam_mods.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_stats.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/string_alloc.pico plugin.pico -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 526s ln -sf libhts.so libhts.so.3 526s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o annot-tsv.o annot-tsv.c 527s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o annot-tsv annot-tsv.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 527s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o bgzip.o bgzip.c 527s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o bgzip bgzip.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread 527s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o htsfile.o htsfile.c 528s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o htsfile htsfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread 528s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o tabix.o tabix.c 528s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o tabix tabix.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm libhts.a -lpthread 528s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hfile_libcurl.pico hfile_libcurl.c 529s gcc -shared -Wl,-E -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_libcurl.so hfile_libcurl.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcurl -lpthread 529s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hfile_gcs.pico hfile_gcs.c 529s gcc -shared -Wl,-E -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_gcs.so hfile_gcs.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 529s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hfile_s3.pico hfile_s3.c 530s gcc -shared -Wl,-E -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3.so hfile_s3.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lpthread 530s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -fPIC -c -o hfile_s3_write.pico hfile_s3_write.c 530s gcc -shared -Wl,-E -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o hfile_s3_write.so hfile_s3_write.pico libhts.so -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lcrypto -lcurl -lpthread 530s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/hts_endian.o test/hts_endian.c 531s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hts_endian test/hts_endian.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm 531s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/fieldarith.o test/fieldarith.c 531s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/fieldarith test/fieldarith.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 531s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/hfile.o test/hfile.c 531s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/hfile test/hfile.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 531s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/pileup.o test/pileup.c 531s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup test/pileup.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 531s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/pileup_mod.o test/pileup_mod.c 532s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/pileup_mod test/pileup_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 532s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/plugins-dlhts.o test/plugins-dlhts.c 532s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/plugins-dlhts test/plugins-dlhts.o -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm 532s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/sam.o test/sam.c 533s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/sam test/sam.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 533s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_bgzf.o test/test_bgzf.c 533s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_bgzf test/test_bgzf.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 533s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_expr.o test/test_expr.c 533s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_expr test/test_expr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 533s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_faidx.o test/test_faidx.c 534s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_faidx test/test_faidx.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 534s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_kfunc.o test/test_kfunc.c 534s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kfunc test/test_kfunc.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 534s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_kstring.o test/test_kstring.c 534s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_kstring test/test_kstring.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 534s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_mod.o test/test_mod.c 534s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_mod test/test_mod.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 534s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_realn.o test/test_realn.c 534s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_realn test/test_realn.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 534s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-regidx.o test/test-regidx.c 535s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-regidx test/test-regidx.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 535s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_str2int.o test/test_str2int.c 535s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_str2int test/test_str2int.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 535s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_time_funcs.o test/test_time_funcs.c 535s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_time_funcs test/test_time_funcs.o 535s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_view.o test/test_view.c 535s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_view test/test_view.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 535s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_index.o test/test_index.c 535s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_index test/test_index.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 535s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-vcf-api.o test/test-vcf-api.c 536s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-api test/test-vcf-api.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 536s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c 536s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 536s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-bcf-sr.o test/test-bcf-sr.c 536s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 536s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/fuzz/hts_open_fuzzer.o test/fuzz/hts_open_fuzzer.c 536s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-bcf-translate.o test/test-bcf-translate.c 536s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf-translate test/test-bcf-translate.o libhts.a -lz -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 536s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-parse-reg.o test/test-parse-reg.c 536s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-parse-reg test/test-parse-reg.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 536s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test_introspection.o test/test_introspection.c 536s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test_introspection test/test_introspection.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 536s gcc -O2 -fno-strict-aliasing -fno-code-hoisting -I. -Wdate-time -D_FORTIFY_SOURCE=3 -c -o test/test-bcf_set_variant_type.o test/test-bcf_set_variant_type.c 542s gcc -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,-flto -fvisibility=hidden -ffat-lto-objects -fvisibility=hidden -rdynamic -o test/test-bcf_set_variant_type test/test-bcf_set_variant_type.o libhts.a -ldeflate -lhtscodecs -llzma -lbz2 -lz -lm -lpthread 542s sed -e '/^static_libs=/s/@static_LIBS@/-lz -lm -lbz2 -llzma -lcurl/;s#@[^-][^@]*@##g' htslib.pc.in > htslib.pc.tmp 542s sed -n '/^static_libs=/s/[^=]*=/HTSLIB_static_LIBS = /p;/^static_ldflags=/s/[^=]*=/HTSLIB_static_LDFLAGS = /p' htslib.pc.tmp > htslib_static.mk 542s sed -e 's#@-includedir@#'`pwd`'#g;s#@-libdir@#'`pwd`'#g' htslib.pc.tmp > htslib-uninstalled.pc 542s test/hts_endian 542s test/test_expr 542s test/test_kfunc 542s test/test_kstring 542s test/test_str2int 542s test/test_time_funcs 542s test/fieldarith test/fieldarith.sam 542s test/hfile 542s if test "xhfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so" != "x"; then \ 542s HTS_PATH=. test/with-shlib.sh test/plugins-dlhts -g ./libhts.so; \ 542s fi 542s if test "xhfile_libcurl.so hfile_gcs.so hfile_s3.so hfile_s3_write.so" != "x"; then \ 542s HTS_PATH=. test/with-shlib.sh test/plugins-dlhts -l ./libhts.so; \ 542s fi 542s test/test_bgzf test/bgziptest.txt 543s test/test-parse-reg -t test/colons.bam 543s Expected error: [E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead 543s Expected error: [E::hts_parse_region] Range is ambiguous. Use {chr1:100-200,chr3} or {chr1}:100-200,chr3 instead 543s Expected error: cd test/faidx && ./test-faidx.sh faidx.tst 543s Testing faidx... 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -e faidx.fa.expected.fai 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t fai_line_length -e 24 trailingblank2 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_has_seq -e 1 foo 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_has_seq -e 0 absent 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_iseq -e trailingblank3 3 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_seq_len -e 33 trailingblank1 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_seq_len64 -e 72 trailingblank2 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -e fastqs.fq.expected.fai 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -Q -t fai_line_length -e 63 FAKE0005_3 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -Q -t fai_line_length -e 144 SRR014849.203935_3 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -t faidx_has_seq -e 1 SRR014849.203935_3 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -t faidx_has_seq -e 0 absent 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -t faidx_iseq -e FAKE0005_1 0 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -t faidx_seq_len -e 453 FSRRS4401CM938_1 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -t faidx_seq_len64 -e 309 FSRRS4401AOV6A_4 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai trailingblank2:28-33 trailingblank3:4-5 bar:4-5 543s [E::hts_parse_region] Mismatching braces in "{chr1" 543s Expected error: [E::hts_parse_region] Unexpected string "x" after region 543s Expected error: [E::hts_parse_region] Unexpected string "y" after region 543s Expected error: [E::hts_parse_region] Unexpected string "chr3" after region 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t fai_fetch trailingblank2:28-33 trailingblank3:4-5 bar:4-5 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t faidx_fetch_seq64 trailingblank2:28-33 trailingblank3:4-5 bar:4-5 543s PASS : $test_faidx -i faidx.fa -f faidx.fa.tmp.fai -t fai_adjust_region trailingblank2:28-33 trailingblank3:4-5 bar:4-5 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -Q FAKE0006_1:4-12 FSRRS4401BE7HA_1:81-120 FAKE0010_2 SRR014849.50939_3:71-90 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -Q -t fai_fetch FAKE0006_1:4-12 FSRRS4401BE7HA_1:81-120 FAKE0010_2 SRR014849.50939_3:71-90 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai -Q -t faidx_fetch_seq64 FAKE0006_1:4-12 FSRRS4401BE7HA_1:81-120 FAKE0010_2 SRR014849.50939_3:71-90 543s PASS : $test_faidx -i fastqs.fq -f fastqs.fq.tmp.fai FAKE0006_1:4-12 FSRRS4401BE7HA_1:81-120 FAKE0010_2 SRR014849.50939_3:71-90 543s PASS : $test_faidx -i ce.fa.tmp.gz -f ce.fa.tmp.gz.fai -g ce.fa.tmp.gz.gzi -e ../ce.fa.fai 543s PASS : $test_faidx -i ce.fa.tmp.gz -f ce.fa.tmp.gz.fai -g ce.fa.tmp.gz.gzi CHROMOSOME_I:5001-5125 CHROMOSOME_X:101-225 543s 543s Expected passes: 25 543s Unexpected passes: 0 543s Expected failures: 0 543s Unexpected failures: 0 543s cd test/sam_filter && ./filter.sh filter.tst 543s Testing sam_filter... 543s PASS : $tv -i 'filter=qname =~ "\.1" && cigar =~ "D"' ../ce#1000.sam 543s PASS : $tv -i 'filter=rname=="CHROMOSOME_II"' ../ce#5b.sam 543s PASS : $tv -i 'filter=rname=~"CHROMOSOME_II"' ../ce#5b.sam 543s PASS : $tv -i 'filter=cigar=~"D"' ../ce#1000.sam 543s PASS : $tv -i 'filter=seq =~ "(AT){2}"' ../ce#1000.sam 543s PASS : $tv -i 'filter=library=="x"' ../xx#rg.sam 543s PASS : $tv -i 'filter=library!="x"' ../xx#rg.sam 543s PASS : $tv -i 'filter=pos % 23 == 11' ../ce#1000.sam | grep -E -cv '^@' 543s PASS : $tv -i 'filter=qlen/(flag*mapq+pos)>5' ../ce#1000.sam | grep -E -cv '^@' 543s PASS : $tv -i 'filter=[NM]>=10 || [MD]=~"A.*A.*A"' -t4 ../ce#1000.sam | grep -E -cv '^@' 543s PASS : $tv -i 'filter=length(seq) != qlen' ../ce#5b.sam | grep -E -cv '^@' 543s PASS : $tv -i 'filter=min(qual) >= 20' ../ce#1000.sam | grep -E -cv '^@' 543s PASS : $tv -i 'filter=max(qual) <= 20' ../ce#1000.sam | grep -E -cv '^@' 543s PASS : $tv -i 'filter=avg(qual) >= 20 && avg(qual) <= 30' ../ce#1000.sam | grep -E -cv '^@' 543s PASS : $tv -i 'filter=sclen>=20' ../realn02.sam | grep -E -v '^@' 543s PASS : $tv -i 'filter=rlen<50' ../realn02.sam | grep -E -v '^@' 543s PASS : $tv -i 'filter=qlen>100' ../realn02.sam | grep -E -v '^@' 543s PASS : $tv -i 'filter=hclen>=4' ../c1#clip.sam | grep -E -v '^@' 543s 543s Expected passes: 18 543s Unexpected passes: 0 543s Expected failures: 0 543s Unexpected failures: 0 543s cd test/tabix && ./test-tabix.sh tabix.tst 543s Testing tabix... 543s PASS : $tabix -f -p vcf vcf_file.tbi.tmp.vcf.gz 543s PASS : $tabix vcf_file.tbi.tmp.vcf.gz 1:3000151-3000151 543s PASS : $tabix vcf_file.tbi.tmp.vcf.gz 2:3199812-3199812 544s PASS : $tabix -f -C -p vcf vcf_file.csi.tmp.vcf.gz 544s PASS : $tabix vcf_file.csi.tmp.vcf.gz 1:3000151-3000151 544s PASS : $tabix vcf_file.csi.tmp.vcf.gz 2:3199812-3199812 544s PASS : $tabix -f -p vcf large_chr.tmp.vcf.gz (must exit non-zero) 544s PASS : $tabix -f -C -p vcf large_chr.tmp.vcf.gz 544s PASS : $tabix large_chr.tmp.vcf.gz chr20:1-2147483647 544s PASS : $tabix -f -p bed bed_file.tbi.tmp.bed.gz 544s PASS : $tabix bed_file.tbi.tmp.bed.gz Y:100200-100200 544s PASS : $tabix -f -p gff gff_file.tbi.tmp.gff.gz 544s PASS : $tabix gff_file.tbi.tmp.gff.gz X:2934832-2935190 544s PASS : $tabix --separate-regions bed_file.tbi.tmp.bed.gz X:1100-1400 Y:100000-100550 Z:100000-100005 544s 544s Expected passes: 14 544s Unexpected passes: 0 544s Expected failures: 0 544s Unexpected failures: 0 544s cd test/mpileup && ./test-pileup.sh mpileup.tst 544s Testing (m)pileup... 544s PASS : $pileup mp_D.sam 544s PASS : $pileup -m mp_D.sam 544s PASS : $pileup mp_DI.sam 544s PASS : $pileup -m mp_DI.sam 544s PASS : $pileup mp_I.sam 544s PASS : $pileup -m mp_I.sam 544s PASS : $pileup mp_P.sam 544s PASS : $pileup -m mp_P.sam 544s PASS : $pileup mp_ID.sam 544s PASS : $pileup -m mp_ID.sam 544s PASS : $pileup mp_N.sam 544s PASS : $pileup -m mp_N.sam 544s PASS : $pileup mp_N2.sam 544s PASS : $pileup -m mp_N2.sam 544s PASS : $pileup c1#pad1.sam 544s PASS : $pileup -m c1#pad1.sam 544s PASS : $pileup c1#pad2.sam 544s PASS : $pileup -m c1#pad2.sam 544s PASS : $pileup c1#pad3.sam 544s PASS : $pileup -m c1#pad3.sam 544s PASS : $pileup -m small.bam 544s 544s Expected passes: 21 544s Unexpected passes: 0 544s Expected failures: 0 544s Unexpected failures: 0 544s cd test/fastq && ./test-fastq.sh 544s Testing fastq support 544s PASS : $tview minimal.fq 544s PASS : $tview minimal.fa 544s PASS : $tview multiline.fq 544s PASS : $tview multiline.fa 544s PASS : $tview -i fastq_aux longline.fq 544s PASS : $tview single.fq 544s PASS : $tview single.fa 544s PASS : $tview -i fastq_aux single.fq 544s PASS : $tview -i fastq_aux single.fa 544s PASS : $tview interleaved.fq 544s PASS : $tview interleaved.fa 544s PASS : $tview -i fastq_aux interleaved.fq 544s PASS : $tview -i fastq_aux interleaved.fa 544s PASS : $tview -i fastq_casava interleaved_casava.fq 544s PASS : $tview -i fastq_barcode=OX -i fastq_casava interleaved_casava.fq 544s PASS : $tview -i fastq_casava interleaved_casava.fa 544s PASS : $tview -i fastq_barcode=OX -i fastq_casava interleaved_casava.fa 544s PASS : $tview -i fastq_casava filter_casava.fq 544s PASS : $tview -i fastq_casava filter_casava.fa 544s PASS : $tview -i fastq_aux r1.fq 544s PASS : $tview -i fastq_aux r2.fq 544s PASS : $tview -i fastq_aux r1.fa 544s PASS : $tview -i fastq_aux r2.fa 544s PASS : $tview -i fastq_name2 name2.fq 544s PASS : $tview -i fastq_name2 name2.fa 544s PASS : $tview -f minimal.sam 544s PASS : $tview -F minimal.sam 544s PASS : $tview -f -o fastq_aux single_aux.sam 544s PASS : $tview -F -o fastq_aux single_aux.sam 544s PASS : $tview -f -o fastq_aux -o fastq_rnum inter_aux.sam 544s PASS : $tview -F -o fastq_aux -o fastq_rnum inter_aux.sam 544s PASS : $tview -f -o fastq_casava inter_casava.sam 544s PASS : $tview -f -o fastq_barcode=OX -o fastq_casava inter_casavaOX.sam 544s PASS : $tview -F -o fastq_casava inter_casava.sam 544s PASS : $tview -F -o fastq_barcode=OX -o fastq_casava inter_casavaOX.sam 544s PASS : $tview -f -o fastq_casava filter_casava.sam 544s PASS : $tview -F -o fastq_casava filter_casava.sam 544s PASS : $tview -f -o fastq_aux -o fastq_rnum r1.sam 544s PASS : $tview -f -o fastq_aux -o fastq_rnum r2.sam 544s PASS : $tview -F -o fastq_aux -o fastq_rnum r1.sam 544s PASS : $tview -F -o fastq_aux -o fastq_rnum r2.sam 544s 544s Expected passes: 41 544s Unexpected passes: 0 544s Expected failures: 0 544s Unexpected failures: 0 544s cd test/base_mods && ./base-mods.sh base-mods.tst 544s Testing base-modifications... 544s PASS : $test_mod MM-chebi.sam 544s PASS : $test_mod MM-double.sam 544s PASS : $test_mod MM-multi.sam 544s PASS : $test_mod MM-explicit.sam 544s PASS : $test_mod -x MM-explicit.sam 544s PASS : $test_mod -f 1 MM-explicit.sam 544s PASS : $test_mod MM-not-all-modded.sam 544s PASS : $pileup_mod < MM-pileup.sam 544s PASS : $pileup_mod < MM-pileup2.sam 544s PASS : $pileup_mod < MM-MNp.sam 544s PASS : $pileup_mod < MM-MNf1.sam (must exit non-zero) 544s PASS : $pileup_mod < MM-MNf2.sam (must exit non-zero) 544s 544s Expected passes: 12 544s Unexpected passes: 0 544s Expected failures: 0 544s Unexpected failures: 0 544s REF_PATH=: test/sam test/ce.fa test/faidx/faidx.fa test/faidx/fastqs.fq 544s (Expect trailing 'x' message for " -1,001x") 544s [W::hts_parse_decimal] Ignoring unknown characters after -1,001[x] 544s (Expect trailing 'k' message for "1.5e+3k") 544s [W::hts_parse_decimal] Ignoring unknown characters after 1.5e+3[k] 544s (Expect dropped fraction message for "12.3456k") 544s [W::hts_parse_decimal] Discarding fractional part of 12.3456k 544s [W::hts_parse_decimal] Discarding fractional part of 12.3456k 544s (Expect invalid numeric message for "A") 544s [W::hts_parse_decimal] Invalid numeric value A[truncated] 544s (Expect invalid numeric message for "G") 544s [W::hts_parse_decimal] Invalid numeric value G[truncated] 544s (Expect invalid numeric message for " +/-") 544s [W::hts_parse_decimal] Invalid numeric value +/-[truncated] 544s (Expect invalid numeric message for " -.e+9999") 544s [W::hts_parse_decimal] Invalid numeric value -.e+9999[truncated] 544s test/test-regidx 544s cd test && REF_PATH=: ./test.pl ${TEST_OPTS:-} 544s bgzip round-trip no threads: .. ok 544s 545s bgzip text mode round-trip no threads: .. ok 545s 545s bgzip -b no threads: .. ok 545s 545s bgzip -b -I no threads: .. ok 545s 545s bgzip multifile no threads: .. ok 545s 545s bgzip round-trip 4 threads: .. ok 545s 545s bgzip text mode round-trip 4 threads: .. ok 545s 545s bgzip -b 4 threads: .. ok 545s 545s bgzip -b -I 4 threads: .. ok 545s 546s bgzip multifile 4 threads: .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -l 0 -b -m 14 -x /tmp/s1GRbSvtoy/index.bam.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.sam > /tmp/s1GRbSvtoy/index.bam 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c /tmp/s1GRbSvtoy/index.bam 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -l 0 -b -m 0 -x /tmp/s1GRbSvtoy/index.bam.bai /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.sam > /tmp/s1GRbSvtoy/index.bam 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -b /tmp/s1GRbSvtoy/index.bam 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -l 0 -z -m 14 -x /tmp/s1GRbSvtoy/index.sam.gz.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.sam > /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -l 0 -z -m 0 -x /tmp/s1GRbSvtoy/index.sam.gz.bai /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.sam > /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -b /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -l 0 -z -m 14 -x /tmp/s1GRbSvtoy/index.sam.gz.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index_dos.sam > /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -l 0 -z -m 0 -x /tmp/s1GRbSvtoy/index.sam.gz.bai /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index_dos.sam > /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -b /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -l 0 -C -x /tmp/s1GRbSvtoy/index.cram.crai /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.sam > /tmp/s1GRbSvtoy/index.cram 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index /tmp/s1GRbSvtoy/index.cram 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -l 0 -b -m 14 -x /tmp/s1GRbSvtoy/index.bcf.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.vcf > /tmp/s1GRbSvtoy/index.bcf 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c /tmp/s1GRbSvtoy/index.bcf 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -l 0 -z -m 14 -x /tmp/s1GRbSvtoy/index.vcf.gz.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.vcf > /tmp/s1GRbSvtoy/index.vcf.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c /tmp/s1GRbSvtoy/index.vcf.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -l 0 -z -m 0 -x /tmp/s1GRbSvtoy/index.vcf.gz.tbi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.vcf > /tmp/s1GRbSvtoy/index.vcf.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -t /tmp/s1GRbSvtoy/index.vcf.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/tabix /tmp/s1GRbSvtoy/index.vcf.gz##idx##/tmp/s1GRbSvtoy/index.vcf.gz.tbi 1:10000060-10000060 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view /tmp/s1GRbSvtoy/index2.bam 1:1000000-1000000 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view /tmp/s1GRbSvtoy/index2.bam 1:2000000-2000000 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view /tmp/s1GRbSvtoy/index2.bam 2:1000000-1000000 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view /tmp/s1GRbSvtoy/index2.bam 2:2000000-2000000 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -@4 -l 0 -b -m 14 -x /tmp/s1GRbSvtoy/index.bam.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.sam > /tmp/s1GRbSvtoy/index.bam 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c /tmp/s1GRbSvtoy/index.bam 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -@4 -l 0 -b -m 0 -x /tmp/s1GRbSvtoy/index.bam.bai /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.sam > /tmp/s1GRbSvtoy/index.bam 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -b /tmp/s1GRbSvtoy/index.bam 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 14 -x /tmp/s1GRbSvtoy/index.sam.gz.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.sam > /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 0 -x /tmp/s1GRbSvtoy/index.sam.gz.bai /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.sam > /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -b /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 14 -x /tmp/s1GRbSvtoy/index.sam.gz.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index_dos.sam > /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 0 -x /tmp/s1GRbSvtoy/index.sam.gz.bai /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index_dos.sam > /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -b /tmp/s1GRbSvtoy/index.sam.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -@4 -l 0 -C -x /tmp/s1GRbSvtoy/index.cram.crai /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.sam > /tmp/s1GRbSvtoy/index.cram 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index /tmp/s1GRbSvtoy/index.cram 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -@4 -l 0 -b -m 14 -x /tmp/s1GRbSvtoy/index.bcf.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.vcf > /tmp/s1GRbSvtoy/index.bcf 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c /tmp/s1GRbSvtoy/index.bcf 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 14 -x /tmp/s1GRbSvtoy/index.vcf.gz.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.vcf > /tmp/s1GRbSvtoy/index.vcf.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c /tmp/s1GRbSvtoy/index.vcf.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -@4 -l 0 -z -m 0 -x /tmp/s1GRbSvtoy/index.vcf.gz.tbi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/index.vcf > /tmp/s1GRbSvtoy/index.vcf.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -t /tmp/s1GRbSvtoy/index.vcf.gz 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/tabix /tmp/s1GRbSvtoy/index.vcf.gz##idx##/tmp/s1GRbSvtoy/index.vcf.gz.tbi 1:10000060-10000060 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view /tmp/s1GRbSvtoy/index2.bam 1:1000000-1000000 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view /tmp/s1GRbSvtoy/index2.bam 1:2000000-2000000 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view /tmp/s1GRbSvtoy/index2.bam 2:1000000-1000000 546s .. ok 546s 546s test_index: 546s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view /tmp/s1GRbSvtoy/index2.bam 2:2000000-2000000 546s .. ok 546s 546s test_view testing multi-ref CRAM modes: 546s ./test_view -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=-1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram 546s ./test_view multi_ref.tmp.cram > multi_ref.tmp.sam_ 546s ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ 546s ./test_view -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=0 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram 547s ./test_view multi_ref.tmp.cram > multi_ref.tmp.sam_ 547s ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ 547s ./test_view -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram 547s ./test_view multi_ref.tmp.cram > multi_ref.tmp.sam_ 547s ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ 547s .. ok 547s 547s test_view testing multi-ref CRAM modes: 547s ./test_view -@4 -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=-1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram 547s ./test_view -@4 multi_ref.tmp.cram > multi_ref.tmp.sam_ 547s ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ 547s ./test_view -@4 -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=0 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram 547s ./test_view -@4 multi_ref.tmp.cram > multi_ref.tmp.sam_ 547s ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ 547s ./test_view -@4 -o seqs_per_slice=100 -o no_ref=1 -o multi_seq_per_slice=1 -S -C multi_ref.tmp.sam > multi_ref.tmp.cram 547s ./test_view -@4 multi_ref.tmp.cram > multi_ref.tmp.sam_ 547s ./compare_sam.pl multi_ref.tmp.sam multi_ref.tmp.sam_ 547s .. ok 547s 547s test_view testing auxf#values.sam, ref auxf.fa: 547s ./test_view -S -l0 -b auxf#values.sam > auxf#values.tmp.bam 547s ./test_view auxf#values.tmp.bam > auxf#values.tmp.bam.sam_ 547s ./compare_sam.pl auxf#values.sam auxf#values.tmp.bam.sam_ 547s ./test_view -t auxf.fa -S -C -o VERSION=2.1 auxf#values.sam > auxf#values.tmp.cram 547s ./test_view -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_ 547s ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_ 547s ./test_view -t auxf.fa -C -o VERSION=3.0 auxf#values.tmp.bam > auxf#values.tmp.bam.cram 547s ./test_view auxf#values.tmp.bam.cram > auxf#values.tmp.bam.cram.bam.sam_ 547s ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.bam.cram.bam.sam_ 547s ./test_view -i reference=auxf.fa auxf#values_java.cram > auxf#values_java.tmp.sam_ 547s ./compare_sam.pl -Baux -nomd auxf#values.sam auxf#values_java.tmp.sam_ 547s .. ok 547s 547s test_view testing c1#bounds.sam, ref c1.fa: 547s ./test_view -S -l0 -b c1#bounds.sam > c1#bounds.tmp.bam 547s ./test_view c1#bounds.tmp.bam > c1#bounds.tmp.bam.sam_ 547s ./compare_sam.pl c1#bounds.sam c1#bounds.tmp.bam.sam_ 547s ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#bounds.sam > c1#bounds.tmp.cram 547s ./test_view -D c1#bounds.tmp.cram > c1#bounds.tmp.cram.sam_ 547s ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.cram.sam_ 547s ./test_view -t c1.fa -C -o VERSION=3.0 c1#bounds.tmp.bam > c1#bounds.tmp.bam.cram 547s ./test_view c1#bounds.tmp.bam.cram > c1#bounds.tmp.bam.cram.bam.sam_ 547s ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.bam.cram.bam.sam_ 547s .. ok 547s 547s test_view testing c1#clip.sam, ref c1.fa: 547s ./test_view -S -l0 -b c1#clip.sam > c1#clip.tmp.bam 547s ./test_view c1#clip.tmp.bam > c1#clip.tmp.bam.sam_ 547s ./compare_sam.pl c1#clip.sam c1#clip.tmp.bam.sam_ 547s ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#clip.sam > c1#clip.tmp.cram 547s ./test_view -D c1#clip.tmp.cram > c1#clip.tmp.cram.sam_ 547s ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.cram.sam_ 547s ./test_view -t c1.fa -C -o VERSION=3.0 c1#clip.tmp.bam > c1#clip.tmp.bam.cram 547s ./test_view c1#clip.tmp.bam.cram > c1#clip.tmp.bam.cram.bam.sam_ 547s ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.bam.cram.bam.sam_ 547s .. ok 547s 547s test_view testing c1#noseq.sam, ref c1.fa: 547s ./test_view -S -l0 -b c1#noseq.sam > c1#noseq.tmp.bam 547s ./test_view c1#noseq.tmp.bam > c1#noseq.tmp.bam.sam_ 547s ./compare_sam.pl c1#noseq.sam c1#noseq.tmp.bam.sam_ 547s ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#noseq.sam > c1#noseq.tmp.cram 547s ./test_view -D c1#noseq.tmp.cram > c1#noseq.tmp.cram.sam_ 547s ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.cram.sam_ 547s ./test_view -t c1.fa -C -o VERSION=3.0 c1#noseq.tmp.bam > c1#noseq.tmp.bam.cram 547s ./test_view c1#noseq.tmp.bam.cram > c1#noseq.tmp.bam.cram.bam.sam_ 547s ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.bam.cram.bam.sam_ 547s .. ok 547s 547s test_view testing c1#pad1.sam, ref c1.fa: 547s ./test_view -S -l0 -b c1#pad1.sam > c1#pad1.tmp.bam 547s ./test_view c1#pad1.tmp.bam > c1#pad1.tmp.bam.sam_ 547s ./compare_sam.pl c1#pad1.sam c1#pad1.tmp.bam.sam_ 547s ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#pad1.sam > c1#pad1.tmp.cram 547s ./test_view -D c1#pad1.tmp.cram > c1#pad1.tmp.cram.sam_ 547s ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.cram.sam_ 547s ./test_view -t c1.fa -C -o VERSION=3.0 c1#pad1.tmp.bam > c1#pad1.tmp.bam.cram 547s ./test_view c1#pad1.tmp.bam.cram > c1#pad1.tmp.bam.cram.bam.sam_ 547s ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.bam.cram.bam.sam_ 547s .. ok 547s 547s test_view testing c1#pad2.sam, ref c1.fa: 547s ./test_view -S -l0 -b c1#pad2.sam > c1#pad2.tmp.bam 547s ./test_view c1#pad2.tmp.bam > c1#pad2.tmp.bam.sam_ 548s ./compare_sam.pl c1#pad2.sam c1#pad2.tmp.bam.sam_ 548s ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#pad2.sam > c1#pad2.tmp.cram 548s ./test_view -D c1#pad2.tmp.cram > c1#pad2.tmp.cram.sam_ 548s ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.cram.sam_ 548s ./test_view -t c1.fa -C -o VERSION=3.0 c1#pad2.tmp.bam > c1#pad2.tmp.bam.cram 548s ./test_view c1#pad2.tmp.bam.cram > c1#pad2.tmp.bam.cram.bam.sam_ 548s ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.bam.cram.bam.sam_ 548s .. ok 548s 548s test_view testing c1#pad3.sam, ref c1.fa: 548s ./test_view -S -l0 -b c1#pad3.sam > c1#pad3.tmp.bam 548s ./test_view c1#pad3.tmp.bam > c1#pad3.tmp.bam.sam_ 548s ./compare_sam.pl c1#pad3.sam c1#pad3.tmp.bam.sam_ 548s ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#pad3.sam > c1#pad3.tmp.cram 548s ./test_view -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_ 548s ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_ 548s ./test_view -t c1.fa -C -o VERSION=3.0 c1#pad3.tmp.bam > c1#pad3.tmp.bam.cram 548s ./test_view c1#pad3.tmp.bam.cram > c1#pad3.tmp.bam.cram.bam.sam_ 548s ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.bam.cram.bam.sam_ 548s .. ok 548s 548s test_view testing c1#unknown.sam, ref c1.fa: 548s ./test_view -S -l0 -b c1#unknown.sam > c1#unknown.tmp.bam 548s ./test_view c1#unknown.tmp.bam > c1#unknown.tmp.bam.sam_ 548s ./compare_sam.pl c1#unknown.sam c1#unknown.tmp.bam.sam_ 548s ./test_view -t c1.fa -S -C -o VERSION=2.1 c1#unknown.sam > c1#unknown.tmp.cram 548s ./test_view -D c1#unknown.tmp.cram > c1#unknown.tmp.cram.sam_ 548s ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.cram.sam_ 548s ./test_view -t c1.fa -C -o VERSION=3.0 c1#unknown.tmp.bam > c1#unknown.tmp.bam.cram 548s ./test_view c1#unknown.tmp.bam.cram > c1#unknown.tmp.bam.cram.bam.sam_ 548s ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.bam.cram.bam.sam_ 548s .. ok 548s 548s test_view testing c2#pad.sam, ref c2.fa: 548s ./test_view -S -l0 -b c2#pad.sam > c2#pad.tmp.bam 548s ./test_view c2#pad.tmp.bam > c2#pad.tmp.bam.sam_ 548s ./compare_sam.pl c2#pad.sam c2#pad.tmp.bam.sam_ 548s ./test_view -t c2.fa -S -C -o VERSION=2.1 c2#pad.sam > c2#pad.tmp.cram 548s ./test_view -D c2#pad.tmp.cram > c2#pad.tmp.cram.sam_ 548s ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.cram.sam_ 548s ./test_view -t c2.fa -C -o VERSION=3.0 c2#pad.tmp.bam > c2#pad.tmp.bam.cram 548s ./test_view c2#pad.tmp.bam.cram > c2#pad.tmp.bam.cram.bam.sam_ 548s ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.bam.cram.bam.sam_ 548s .. ok 548s 548s test_view testing ce#1.sam, ref ce.fa: 548s ./test_view -S -l0 -b ce#1.sam > ce#1.tmp.bam 548s ./test_view ce#1.tmp.bam > ce#1.tmp.bam.sam_ 548s ./compare_sam.pl ce#1.sam ce#1.tmp.bam.sam_ 548s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#1.sam > ce#1.tmp.cram 548s ./test_view -D ce#1.tmp.cram > ce#1.tmp.cram.sam_ 548s ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.cram.sam_ 548s ./test_view -t ce.fa -C -o VERSION=3.0 ce#1.tmp.bam > ce#1.tmp.bam.cram 548s ./test_view ce#1.tmp.bam.cram > ce#1.tmp.bam.cram.bam.sam_ 548s ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.bam.cram.bam.sam_ 548s .. ok 548s 548s test_view testing ce#1000.sam, ref ce.fa: 548s ./test_view -S -b ce#1000.sam > ce#1000.tmp.bam 548s ./test_view ce#1000.tmp.bam > ce#1000.tmp.bam.sam_ 548s ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_ 548s ./test_view -S -l0 -b ce#1000.sam > ce#1000.tmp.bam 548s ./test_view ce#1000.tmp.bam > ce#1000.tmp.bam.sam_ 548s ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_ 548s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#1000.sam > ce#1000.tmp.cram 548s ./test_view -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ 548s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ 548s ./test_view -t ce.fa -S -l0 -C -o VERSION=3.0 ce#1000.sam > ce#1000.tmp.cram 548s ./test_view -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ 548s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ 548s ./test_view -t ce.fa -C -o VERSION=3.0 ce#1000.tmp.bam > ce#1000.tmp.bam.cram 548s ./test_view ce#1000.tmp.bam.cram > ce#1000.tmp.bam.cram.bam.sam_ 548s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.bam.cram.bam.sam_ 548s .. ok 548s 548s test_view testing ce#2.sam, ref ce.fa: 548s ./test_view -S -l0 -b ce#2.sam > ce#2.tmp.bam 548s ./test_view ce#2.tmp.bam > ce#2.tmp.bam.sam_ 548s ./compare_sam.pl ce#2.sam ce#2.tmp.bam.sam_ 548s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#2.sam > ce#2.tmp.cram 548s ./test_view -D ce#2.tmp.cram > ce#2.tmp.cram.sam_ 548s ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.cram.sam_ 548s ./test_view -t ce.fa -C -o VERSION=3.0 ce#2.tmp.bam > ce#2.tmp.bam.cram 548s ./test_view ce#2.tmp.bam.cram > ce#2.tmp.bam.cram.bam.sam_ 548s ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.bam.cram.bam.sam_ 548s .. ok 548s 548s test_view testing ce#5.sam, ref ce.fa: 548s ./test_view -S -l0 -b ce#5.sam > ce#5.tmp.bam 548s ./test_view ce#5.tmp.bam > ce#5.tmp.bam.sam_ 548s ./compare_sam.pl ce#5.sam ce#5.tmp.bam.sam_ 548s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#5.sam > ce#5.tmp.cram 548s ./test_view -D ce#5.tmp.cram > ce#5.tmp.cram.sam_ 548s ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_ 548s ./test_view -t ce.fa -C -o VERSION=3.0 ce#5.tmp.bam > ce#5.tmp.bam.cram 548s ./test_view ce#5.tmp.bam.cram > ce#5.tmp.bam.cram.bam.sam_ 548s ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.bam.cram.bam.sam_ 548s .. ok 548s 548s test_view testing ce#5b.sam, ref ce.fa: 548s ./test_view -S -l0 -b ce#5b.sam > ce#5b.tmp.bam 548s ./test_view ce#5b.tmp.bam > ce#5b.tmp.bam.sam_ 548s ./compare_sam.pl ce#5b.sam ce#5b.tmp.bam.sam_ 548s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#5b.sam > ce#5b.tmp.cram 548s ./test_view -D ce#5b.tmp.cram > ce#5b.tmp.cram.sam_ 548s ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.cram.sam_ 548s ./test_view -t ce.fa -C -o VERSION=3.0 ce#5b.tmp.bam > ce#5b.tmp.bam.cram 548s ./test_view ce#5b.tmp.bam.cram > ce#5b.tmp.bam.cram.bam.sam_ 548s ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.bam.cram.bam.sam_ 549s ./test_view -i reference=ce.fa ce#5b_java.cram > ce#5b_java.tmp.sam_ 549s ./compare_sam.pl -Baux -nomd ce#5b.sam ce#5b_java.tmp.sam_ 549s .. ok 549s 549s test_view testing ce#large_seq.sam, ref ce.fa: 549s ./test_view -S -l0 -b ce#large_seq.sam > ce#large_seq.tmp.bam 549s ./test_view ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.sam_ 549s ./compare_sam.pl ce#large_seq.sam ce#large_seq.tmp.bam.sam_ 549s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#large_seq.sam > ce#large_seq.tmp.cram 549s ./test_view -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ 549s ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ 549s ./test_view -t ce.fa -C -o VERSION=3.0 ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.cram 549s ./test_view ce#large_seq.tmp.bam.cram > ce#large_seq.tmp.bam.cram.bam.sam_ 549s ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.bam.cram.bam.sam_ 549s .. ok 549s 549s test_view testing ce#supp.sam, ref ce.fa: 549s ./test_view -S -l0 -b ce#supp.sam > ce#supp.tmp.bam 549s ./test_view ce#supp.tmp.bam > ce#supp.tmp.bam.sam_ 549s ./compare_sam.pl ce#supp.sam ce#supp.tmp.bam.sam_ 549s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#supp.sam > ce#supp.tmp.cram 549s ./test_view -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_ 549s ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_ 549s ./test_view -t ce.fa -C -o VERSION=3.0 ce#supp.tmp.bam > ce#supp.tmp.bam.cram 549s ./test_view ce#supp.tmp.bam.cram > ce#supp.tmp.bam.cram.bam.sam_ 549s ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.bam.cram.bam.sam_ 549s .. ok 549s 549s test_view testing ce#tag_depadded.sam, ref ce.fa: 549s ./test_view -S -l0 -b ce#tag_depadded.sam > ce#tag_depadded.tmp.bam 549s ./test_view ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.sam_ 549s ./compare_sam.pl ce#tag_depadded.sam ce#tag_depadded.tmp.bam.sam_ 549s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#tag_depadded.sam > ce#tag_depadded.tmp.cram 549s ./test_view -D ce#tag_depadded.tmp.cram > ce#tag_depadded.tmp.cram.sam_ 549s ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.cram.sam_ 549s ./test_view -t ce.fa -C -o VERSION=3.0 ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.cram 549s ./test_view ce#tag_depadded.tmp.bam.cram > ce#tag_depadded.tmp.bam.cram.bam.sam_ 549s ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.bam.cram.bam.sam_ 549s .. ok 549s 549s test_view testing ce#tag_padded.sam, ref ce.fa: 549s ./test_view -S -l0 -b ce#tag_padded.sam > ce#tag_padded.tmp.bam 549s ./test_view ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.sam_ 549s ./compare_sam.pl ce#tag_padded.sam ce#tag_padded.tmp.bam.sam_ 549s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#tag_padded.sam > ce#tag_padded.tmp.cram 549s ./test_view -D ce#tag_padded.tmp.cram > ce#tag_padded.tmp.cram.sam_ 549s ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.cram.sam_ 549s ./test_view -t ce.fa -C -o VERSION=3.0 ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.cram 549s ./test_view ce#tag_padded.tmp.bam.cram > ce#tag_padded.tmp.bam.cram.bam.sam_ 549s ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.bam.cram.bam.sam_ 549s .. ok 549s 549s test_view testing ce#unmap.sam, ref ce.fa: 549s ./test_view -S -l0 -b ce#unmap.sam > ce#unmap.tmp.bam 549s ./test_view ce#unmap.tmp.bam > ce#unmap.tmp.bam.sam_ 549s ./compare_sam.pl ce#unmap.sam ce#unmap.tmp.bam.sam_ 549s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#unmap.sam > ce#unmap.tmp.cram 549s ./test_view -D ce#unmap.tmp.cram > ce#unmap.tmp.cram.sam_ 549s ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.cram.sam_ 549s ./test_view -t ce.fa -C -o VERSION=3.0 ce#unmap.tmp.bam > ce#unmap.tmp.bam.cram 549s ./test_view ce#unmap.tmp.bam.cram > ce#unmap.tmp.bam.cram.bam.sam_ 549s ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.bam.cram.bam.sam_ 549s .. ok 549s 549s test_view testing ce#unmap1.sam, ref ce.fa: 549s ./test_view -S -l0 -b ce#unmap1.sam > ce#unmap1.tmp.bam 549s ./test_view ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.sam_ 549s ./compare_sam.pl ce#unmap1.sam ce#unmap1.tmp.bam.sam_ 549s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#unmap1.sam > ce#unmap1.tmp.cram 549s ./test_view -D ce#unmap1.tmp.cram > ce#unmap1.tmp.cram.sam_ 549s ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.cram.sam_ 549s ./test_view -t ce.fa -C -o VERSION=3.0 ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.cram 549s ./test_view ce#unmap1.tmp.bam.cram > ce#unmap1.tmp.bam.cram.bam.sam_ 549s ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.bam.cram.bam.sam_ 549s .. ok 549s 549s test_view testing ce#unmap2.sam, ref ce.fa: 549s ./test_view -S -l0 -b ce#unmap2.sam > ce#unmap2.tmp.bam 549s ./test_view ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.sam_ 549s ./compare_sam.pl ce#unmap2.sam ce#unmap2.tmp.bam.sam_ 549s ./test_view -t ce.fa -S -C -o VERSION=2.1 ce#unmap2.sam > ce#unmap2.tmp.cram 549s ./test_view -D ce#unmap2.tmp.cram > ce#unmap2.tmp.cram.sam_ 549s ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.cram.sam_ 549s ./test_view -t ce.fa -C -o VERSION=3.0 ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.cram 549s ./test_view ce#unmap2.tmp.bam.cram > ce#unmap2.tmp.bam.cram.bam.sam_ 549s ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.bam.cram.bam.sam_ 549s .. ok 549s 549s test_view testing md#1.sam, ref md.fa: 549s ./test_view -S -l0 -b md#1.sam > md#1.tmp.bam 549s ./test_view md#1.tmp.bam > md#1.tmp.bam.sam_ 549s ./compare_sam.pl md#1.sam md#1.tmp.bam.sam_ 549s ./test_view -t md.fa -S -C -o VERSION=2.1 md#1.sam > md#1.tmp.cram 549s ./test_view -D md#1.tmp.cram > md#1.tmp.cram.sam_ 549s ./compare_sam.pl md#1.sam md#1.tmp.cram.sam_ 549s ./test_view -t md.fa -C -o VERSION=3.0 md#1.tmp.bam > md#1.tmp.bam.cram 549s ./test_view md#1.tmp.bam.cram > md#1.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl md#1.sam md#1.tmp.bam.cram.bam.sam_ 550s .. ok 550s 550s test_view testing xx#blank.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#blank.sam > xx#blank.tmp.bam 550s ./test_view xx#blank.tmp.bam > xx#blank.tmp.bam.sam_ 550s ./compare_sam.pl xx#blank.sam xx#blank.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#blank.sam > xx#blank.tmp.cram 550s ./test_view -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_ 550s ./test_view -t xx.fa -C -o VERSION=3.0 xx#blank.tmp.bam > xx#blank.tmp.bam.cram 550s ./test_view xx#blank.tmp.bam.cram > xx#blank.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.bam.cram.bam.sam_ 550s .. ok 550s 550s test_view testing xx#large_aux.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#large_aux.sam > xx#large_aux.tmp.bam 550s ./test_view xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.sam_ 550s ./compare_sam.pl xx#large_aux.sam xx#large_aux.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#large_aux.sam > xx#large_aux.tmp.cram 550s ./test_view -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ 550s ./test_view -t xx.fa -C -o VERSION=3.0 xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.cram 550s ./test_view xx#large_aux.tmp.bam.cram > xx#large_aux.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.bam.cram.bam.sam_ 550s ./test_view -i reference=xx.fa xx#large_aux_java.cram > xx#large_aux_java.tmp.sam_ 550s [W::sanitise_SQ_lines] Header @SQ length mismatch for ref xx, 30 vs 20 550s ./compare_sam.pl -Baux -nomd xx#large_aux.sam xx#large_aux_java.tmp.sam_ 550s .. ok 550s 550s test_view testing xx#large_aux2.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#large_aux2.sam > xx#large_aux2.tmp.bam 550s ./test_view xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.sam_ 550s ./compare_sam.pl xx#large_aux2.sam xx#large_aux2.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#large_aux2.sam > xx#large_aux2.tmp.cram 550s ./test_view -D xx#large_aux2.tmp.cram > xx#large_aux2.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.cram.sam_ 550s ./test_view -t xx.fa -C -o VERSION=3.0 xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.cram 550s ./test_view xx#large_aux2.tmp.bam.cram > xx#large_aux2.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.bam.cram.bam.sam_ 550s .. ok 550s 550s test_view testing xx#MD.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#MD.sam > xx#MD.tmp.bam 550s ./test_view xx#MD.tmp.bam > xx#MD.tmp.bam.sam_ 550s ./compare_sam.pl xx#MD.sam xx#MD.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#MD.sam > xx#MD.tmp.cram 550s ./test_view -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_ 550s ./test_view -t xx.fa -C -o VERSION=3.0 xx#MD.tmp.bam > xx#MD.tmp.bam.cram 550s ./test_view xx#MD.tmp.bam.cram > xx#MD.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.bam.cram.bam.sam_ 550s .. ok 550s 550s test_view testing xx#MD2.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#MD2.sam > xx#MD2.tmp.bam 550s ./test_view xx#MD2.tmp.bam > xx#MD2.tmp.bam.sam_ 550s ./compare_sam.pl xx#MD2.sam xx#MD2.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#MD2.sam > xx#MD2.tmp.cram 550s ./test_view -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.cram.sam_ 550s ./test_view -t xx.fa -C -o VERSION=3.0 xx#MD2.tmp.bam > xx#MD2.tmp.bam.cram 550s ./test_view xx#MD2.tmp.bam.cram > xx#MD2.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.bam.cram.bam.sam_ 550s .. ok 550s 550s test_view testing xx#minimal.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#minimal.sam > xx#minimal.tmp.bam 550s ./test_view xx#minimal.tmp.bam > xx#minimal.tmp.bam.sam_ 550s ./compare_sam.pl xx#minimal.sam xx#minimal.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#minimal.sam > xx#minimal.tmp.cram 550s ./test_view -D xx#minimal.tmp.cram > xx#minimal.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.cram.sam_ 550s ./test_view -t xx.fa -C -o VERSION=3.0 xx#minimal.tmp.bam > xx#minimal.tmp.bam.cram 550s ./test_view xx#minimal.tmp.bam.cram > xx#minimal.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.bam.cram.bam.sam_ 550s .. ok 550s 550s test_view testing xx#pair.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#pair.sam > xx#pair.tmp.bam 550s ./test_view xx#pair.tmp.bam > xx#pair.tmp.bam.sam_ 550s ./compare_sam.pl xx#pair.sam xx#pair.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#pair.sam > xx#pair.tmp.cram 550s ./test_view -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_ 550s ./test_view -t xx.fa -C -o VERSION=3.0 xx#pair.tmp.bam > xx#pair.tmp.bam.cram 550s ./test_view xx#pair.tmp.bam.cram > xx#pair.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.bam.cram.bam.sam_ 550s .. ok 550s 550s test_view testing xx#repeated.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#repeated.sam > xx#repeated.tmp.bam 550s ./test_view xx#repeated.tmp.bam > xx#repeated.tmp.bam.sam_ 550s ./compare_sam.pl xx#repeated.sam xx#repeated.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#repeated.sam > xx#repeated.tmp.cram 550s ./test_view -D xx#repeated.tmp.cram > xx#repeated.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.cram.sam_ 550s ./test_view -t xx.fa -C -o VERSION=3.0 xx#repeated.tmp.bam > xx#repeated.tmp.bam.cram 550s ./test_view xx#repeated.tmp.bam.cram > xx#repeated.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.bam.cram.bam.sam_ 550s .. ok 550s 550s test_view testing xx#rg.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#rg.sam > xx#rg.tmp.bam 550s ./test_view xx#rg.tmp.bam > xx#rg.tmp.bam.sam_ 550s ./compare_sam.pl xx#rg.sam xx#rg.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#rg.sam > xx#rg.tmp.cram 550s ./test_view -D xx#rg.tmp.cram > xx#rg.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.cram.sam_ 550s ./test_view -t xx.fa -C -o VERSION=3.0 xx#rg.tmp.bam > xx#rg.tmp.bam.cram 550s ./test_view xx#rg.tmp.bam.cram > xx#rg.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.bam.cram.bam.sam_ 550s .. ok 550s 550s test_view testing xx#tlen.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#tlen.sam > xx#tlen.tmp.bam 550s ./test_view xx#tlen.tmp.bam > xx#tlen.tmp.bam.sam_ 550s ./compare_sam.pl xx#tlen.sam xx#tlen.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#tlen.sam > xx#tlen.tmp.cram 550s ./test_view -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_ 550s ./test_view -t xx.fa -C -o VERSION=3.0 xx#tlen.tmp.bam > xx#tlen.tmp.bam.cram 550s ./test_view xx#tlen.tmp.bam.cram > xx#tlen.tmp.bam.cram.bam.sam_ 550s ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.bam.cram.bam.sam_ 550s .. ok 550s 550s test_view testing xx#tlen2.sam, ref xx.fa: 550s ./test_view -S -l0 -b xx#tlen2.sam > xx#tlen2.tmp.bam 550s ./test_view xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.sam_ 550s ./compare_sam.pl xx#tlen2.sam xx#tlen2.tmp.bam.sam_ 550s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#tlen2.sam > xx#tlen2.tmp.cram 550s ./test_view -D xx#tlen2.tmp.cram > xx#tlen2.tmp.cram.sam_ 550s ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.cram.sam_ 551s ./test_view -t xx.fa -C -o VERSION=3.0 xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.cram 551s ./test_view xx#tlen2.tmp.bam.cram > xx#tlen2.tmp.bam.cram.bam.sam_ 551s ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.bam.cram.bam.sam_ 551s .. ok 551s 551s test_view testing xx#triplet.sam, ref xx.fa: 551s ./test_view -S -l0 -b xx#triplet.sam > xx#triplet.tmp.bam 551s ./test_view xx#triplet.tmp.bam > xx#triplet.tmp.bam.sam_ 551s ./compare_sam.pl xx#triplet.sam xx#triplet.tmp.bam.sam_ 551s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#triplet.sam > xx#triplet.tmp.cram 551s ./test_view -D xx#triplet.tmp.cram > xx#triplet.tmp.cram.sam_ 551s ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.cram.sam_ 551s ./test_view -t xx.fa -C -o VERSION=3.0 xx#triplet.tmp.bam > xx#triplet.tmp.bam.cram 551s ./test_view xx#triplet.tmp.bam.cram > xx#triplet.tmp.bam.cram.bam.sam_ 551s ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.bam.cram.bam.sam_ 551s .. ok 551s 551s test_view testing xx#unsorted.sam, ref xx.fa: 551s ./test_view -S -l0 -b xx#unsorted.sam > xx#unsorted.tmp.bam 551s ./test_view xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.sam_ 551s ./compare_sam.pl xx#unsorted.sam xx#unsorted.tmp.bam.sam_ 551s ./test_view -t xx.fa -S -C -o VERSION=2.1 xx#unsorted.sam > xx#unsorted.tmp.cram 551s ./test_view -D xx#unsorted.tmp.cram > xx#unsorted.tmp.cram.sam_ 551s ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.cram.sam_ 551s ./test_view -t xx.fa -C -o VERSION=3.0 xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.cram 551s ./test_view xx#unsorted.tmp.bam.cram > xx#unsorted.tmp.bam.cram.bam.sam_ 551s ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.bam.cram.bam.sam_ 551s .. ok 551s 551s test_view testing embed_ref=2: 551s ./test_view -C -p ce#1000_er.tmp.cram ce#1000.sam 551s [W::cram_get_ref] Failed to populate reference for id 0 551s [W::cram_write_SAM_hdr] No M5 tags present and could not find reference 551s [W::cram_write_SAM_hdr] Enabling embed_ref=2 option 551s [W::cram_write_SAM_hdr] NOTE: the CRAM file will be bigger than using an external reference 551s ./test_view -p ce#1000_er.tmp.cram.sam ce#1000_er.tmp.cram 551s ./compare_sam.pl ce#1000.sam ce#1000_er.tmp.cram.sam 551s .. ok 551s 551s test_view testing region queries: 551s ./test_view -i reference=ce.fa range.cram CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp 551s ./compare_sam.pl range.tmp range.out 551s ./test_view range.bam CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp 551s ./compare_sam.pl range.tmp range.out 551s .. ok 551s 551s test_view testing BAM files with absent @SQ lines: 551s ./test_view -p no_hdr_sq_1.tmp.sam no_hdr_sq_1.bam 551s ./compare_sam.pl no_hdr_sq_1.tmp.sam no_hdr_sq_1.expected.sam 551s ./test_view -p no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.bam CHROMOSOME_I 551s ./compare_sam.pl no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.expected.sam 551s .. ok 551s 551s test_view testing large (> 2Gbases) positions: 551s ./test_view -z -p longrefs/longref.tmp.sam.gz -x longrefs/longref.tmp.sam.gz.csi.otf -m 14 longrefs/longref.sam 551s ./test_view -p longrefs/longref.tmp.sam_ longrefs/longref.tmp.sam.gz 551s ./compare_sam.pl longrefs/longref.sam longrefs/longref.tmp.sam_ 551s test_view: 551s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c longrefs/longref.tmp.sam.gz 551s .. ok 551s 551s ./test_view -p longrefs/longref_itr.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003 551s ./compare_sam.pl longrefs/longref_itr.expected.sam longrefs/longref_itr.tmp.sam 551s ./test_view -M -p longrefs/longref_multi.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003 CHROMOSOME_I:10000000100-10000000110 551s ./compare_sam.pl longrefs/longref_multi.expected.sam longrefs/longref_multi.tmp.sam 551s .. ok 551s 551s test_view testing auxf#values.sam, ref auxf.fa: 551s ./test_view -@4 -S -l0 -b auxf#values.sam > auxf#values.tmp.bam 551s ./test_view -@4 auxf#values.tmp.bam > auxf#values.tmp.bam.sam_ 551s ./compare_sam.pl auxf#values.sam auxf#values.tmp.bam.sam_ 551s ./test_view -@4 -t auxf.fa -S -C -o VERSION=2.1 auxf#values.sam > auxf#values.tmp.cram 551s ./test_view -@4 -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_ 551s ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_ 551s ./test_view -@4 -t auxf.fa -C -o VERSION=3.0 auxf#values.tmp.bam > auxf#values.tmp.bam.cram 551s ./test_view -@4 auxf#values.tmp.bam.cram > auxf#values.tmp.bam.cram.bam.sam_ 551s ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.bam.cram.bam.sam_ 551s ./test_view -@4 -t auxf.fa -S -l7 -C -o VERSION=3.1 -o archive auxf#values.sam > auxf#values.tmp.cram 551s ./test_view -@4 -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_ 551s ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_ 551s ./test_view -@4 -t auxf.fa -S -l7 -C -o VERSION=4.0 -o archive auxf#values.sam > auxf#values.tmp.cram 551s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 551s This is a technology demonstration that should not be used for archival data. 551s ./test_view -@4 -D auxf#values.tmp.cram > auxf#values.tmp.cram.sam_ 551s ./compare_sam.pl -nomd auxf#values.sam auxf#values.tmp.cram.sam_ 553s ./test_view -@4 -i reference=auxf.fa auxf#values_java.cram > auxf#values_java.tmp.sam_ 553s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 553s This is a technology demonstration that should not be used for archival data. 553s ./compare_sam.pl -Baux -nomd auxf#values.sam auxf#values_java.tmp.sam_ 553s .. ok 553s 553s test_view testing c1#bounds.sam, ref c1.fa: 553s ./test_view -@4 -S -l0 -b c1#bounds.sam > c1#bounds.tmp.bam 553s ./test_view -@4 c1#bounds.tmp.bam > c1#bounds.tmp.bam.sam_ 553s ./compare_sam.pl c1#bounds.sam c1#bounds.tmp.bam.sam_ 553s ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#bounds.sam > c1#bounds.tmp.cram 553s ./test_view -@4 -D c1#bounds.tmp.cram > c1#bounds.tmp.cram.sam_ 553s ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.cram.sam_ 553s ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#bounds.tmp.bam > c1#bounds.tmp.bam.cram 553s ./test_view -@4 c1#bounds.tmp.bam.cram > c1#bounds.tmp.bam.cram.bam.sam_ 553s ./compare_sam.pl -nomd c1#bounds.sam c1#bounds.tmp.bam.cram.bam.sam_ 553s .. ok 553s 553s test_view testing c1#clip.sam, ref c1.fa: 553s ./test_view -@4 -S -l0 -b c1#clip.sam > c1#clip.tmp.bam 553s ./test_view -@4 c1#clip.tmp.bam > c1#clip.tmp.bam.sam_ 553s ./compare_sam.pl c1#clip.sam c1#clip.tmp.bam.sam_ 553s ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#clip.sam > c1#clip.tmp.cram 553s ./test_view -@4 -D c1#clip.tmp.cram > c1#clip.tmp.cram.sam_ 553s ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.cram.sam_ 553s ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#clip.tmp.bam > c1#clip.tmp.bam.cram 553s ./test_view -@4 c1#clip.tmp.bam.cram > c1#clip.tmp.bam.cram.bam.sam_ 553s ./compare_sam.pl -nomd c1#clip.sam c1#clip.tmp.bam.cram.bam.sam_ 553s .. ok 553s 553s test_view testing c1#noseq.sam, ref c1.fa: 553s ./test_view -@4 -S -l0 -b c1#noseq.sam > c1#noseq.tmp.bam 553s ./test_view -@4 c1#noseq.tmp.bam > c1#noseq.tmp.bam.sam_ 553s ./compare_sam.pl c1#noseq.sam c1#noseq.tmp.bam.sam_ 553s ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#noseq.sam > c1#noseq.tmp.cram 553s ./test_view -@4 -D c1#noseq.tmp.cram > c1#noseq.tmp.cram.sam_ 553s ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.cram.sam_ 553s ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#noseq.tmp.bam > c1#noseq.tmp.bam.cram 553s ./test_view -@4 c1#noseq.tmp.bam.cram > c1#noseq.tmp.bam.cram.bam.sam_ 553s ./compare_sam.pl -nomd c1#noseq.sam c1#noseq.tmp.bam.cram.bam.sam_ 553s .. ok 553s 553s test_view testing c1#pad1.sam, ref c1.fa: 553s ./test_view -@4 -S -l0 -b c1#pad1.sam > c1#pad1.tmp.bam 553s ./test_view -@4 c1#pad1.tmp.bam > c1#pad1.tmp.bam.sam_ 553s ./compare_sam.pl c1#pad1.sam c1#pad1.tmp.bam.sam_ 553s ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#pad1.sam > c1#pad1.tmp.cram 553s ./test_view -@4 -D c1#pad1.tmp.cram > c1#pad1.tmp.cram.sam_ 553s ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.cram.sam_ 553s ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#pad1.tmp.bam > c1#pad1.tmp.bam.cram 553s ./test_view -@4 c1#pad1.tmp.bam.cram > c1#pad1.tmp.bam.cram.bam.sam_ 553s ./compare_sam.pl -nomd c1#pad1.sam c1#pad1.tmp.bam.cram.bam.sam_ 553s .. ok 553s 553s test_view testing c1#pad2.sam, ref c1.fa: 553s ./test_view -@4 -S -l0 -b c1#pad2.sam > c1#pad2.tmp.bam 553s ./test_view -@4 c1#pad2.tmp.bam > c1#pad2.tmp.bam.sam_ 553s ./compare_sam.pl c1#pad2.sam c1#pad2.tmp.bam.sam_ 553s ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#pad2.sam > c1#pad2.tmp.cram 553s ./test_view -@4 -D c1#pad2.tmp.cram > c1#pad2.tmp.cram.sam_ 553s ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.cram.sam_ 553s ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#pad2.tmp.bam > c1#pad2.tmp.bam.cram 553s ./test_view -@4 c1#pad2.tmp.bam.cram > c1#pad2.tmp.bam.cram.bam.sam_ 553s ./compare_sam.pl -nomd c1#pad2.sam c1#pad2.tmp.bam.cram.bam.sam_ 553s .. ok 553s 553s test_view testing c1#pad3.sam, ref c1.fa: 553s ./test_view -@4 -S -l0 -b c1#pad3.sam > c1#pad3.tmp.bam 553s ./test_view -@4 c1#pad3.tmp.bam > c1#pad3.tmp.bam.sam_ 553s ./compare_sam.pl c1#pad3.sam c1#pad3.tmp.bam.sam_ 553s ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#pad3.sam > c1#pad3.tmp.cram 553s ./test_view -@4 -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_ 553s ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_ 553s ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#pad3.tmp.bam > c1#pad3.tmp.bam.cram 553s ./test_view -@4 c1#pad3.tmp.bam.cram > c1#pad3.tmp.bam.cram.bam.sam_ 553s ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.bam.cram.bam.sam_ 553s ./test_view -@4 -t c1.fa -S -l7 -C -o VERSION=3.1 -o archive c1#pad3.sam > c1#pad3.tmp.cram 553s ./test_view -@4 -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_ 553s ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_ 553s ./test_view -@4 -t c1.fa -S -l7 -C -o VERSION=4.0 -o archive c1#pad3.sam > c1#pad3.tmp.cram 553s ./test_view -@4 -D c1#pad3.tmp.cram > c1#pad3.tmp.cram.sam_ 553s ./compare_sam.pl -nomd c1#pad3.sam c1#pad3.tmp.cram.sam_ 553s .. ok 553s 553s test_view testing c1#unknown.sam, ref c1.fa: 553s ./test_view -@4 -S -l0 -b c1#unknown.sam > c1#unknown.tmp.bam 553s ./test_view -@4 c1#unknown.tmp.bam > c1#unknown.tmp.bam.sam_ 553s ./compare_sam.pl c1#unknown.sam c1#unknown.tmp.bam.sam_ 553s ./test_view -@4 -t c1.fa -S -C -o VERSION=2.1 c1#unknown.sam > c1#unknown.tmp.cram 553s ./test_view -@4 -D c1#unknown.tmp.cram > c1#unknown.tmp.cram.sam_ 553s ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.cram.sam_ 553s ./test_view -@4 -t c1.fa -C -o VERSION=3.0 c1#unknown.tmp.bam > c1#unknown.tmp.bam.cram 553s ./test_view -@4 c1#unknown.tmp.bam.cram > c1#unknown.tmp.bam.cram.bam.sam_ 553s ./compare_sam.pl -nomd c1#unknown.sam c1#unknown.tmp.bam.cram.bam.sam_ 553s .. ok 553s 553s test_view testing c2#pad.sam, ref c2.fa: 553s ./test_view -@4 -S -l0 -b c2#pad.sam > c2#pad.tmp.bam 553s ./test_view -@4 c2#pad.tmp.bam > c2#pad.tmp.bam.sam_ 553s ./compare_sam.pl c2#pad.sam c2#pad.tmp.bam.sam_ 553s ./test_view -@4 -t c2.fa -S -C -o VERSION=2.1 c2#pad.sam > c2#pad.tmp.cram 553s ./test_view -@4 -D c2#pad.tmp.cram > c2#pad.tmp.cram.sam_ 553s ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.cram.sam_ 553s ./test_view -@4 -t c2.fa -C -o VERSION=3.0 c2#pad.tmp.bam > c2#pad.tmp.bam.cram 553s ./test_view -@4 c2#pad.tmp.bam.cram > c2#pad.tmp.bam.cram.bam.sam_ 553s ./compare_sam.pl -nomd c2#pad.sam c2#pad.tmp.bam.cram.bam.sam_ 553s .. ok 553s 553s test_view testing ce#1.sam, ref ce.fa: 553s ./test_view -@4 -S -l0 -b ce#1.sam > ce#1.tmp.bam 553s ./test_view -@4 ce#1.tmp.bam > ce#1.tmp.bam.sam_ 553s ./compare_sam.pl ce#1.sam ce#1.tmp.bam.sam_ 553s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#1.sam > ce#1.tmp.cram 553s ./test_view -@4 -D ce#1.tmp.cram > ce#1.tmp.cram.sam_ 553s ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.cram.sam_ 553s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#1.tmp.bam > ce#1.tmp.bam.cram 553s ./test_view -@4 ce#1.tmp.bam.cram > ce#1.tmp.bam.cram.bam.sam_ 553s ./compare_sam.pl -nomd ce#1.sam ce#1.tmp.bam.cram.bam.sam_ 553s .. ok 553s 553s test_view testing ce#1000.sam, ref ce.fa: 553s ./test_view -@4 -S -b ce#1000.sam > ce#1000.tmp.bam 553s ./test_view -@4 ce#1000.tmp.bam > ce#1000.tmp.bam.sam_ 553s ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_ 553s ./test_view -@4 -S -l0 -b ce#1000.sam > ce#1000.tmp.bam 553s ./test_view -@4 ce#1000.tmp.bam > ce#1000.tmp.bam.sam_ 553s ./compare_sam.pl ce#1000.sam ce#1000.tmp.bam.sam_ 553s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#1000.sam > ce#1000.tmp.cram 553s ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ 553s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ 553s ./test_view -@4 -t ce.fa -S -l0 -C -o VERSION=3.0 ce#1000.sam > ce#1000.tmp.cram 553s ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ 553s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ 553s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#1000.tmp.bam > ce#1000.tmp.bam.cram 553s ./test_view -@4 ce#1000.tmp.bam.cram > ce#1000.tmp.bam.cram.bam.sam_ 553s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.bam.cram.bam.sam_ 553s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#1000.tmp.bam.cram > ce#1000.tmp.bam.cram.ms 553s ./test_view -@4 ce#1000.tmp.bam.cram.ms > ce#1000.tmp.bam.cram.sam_ 553s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.bam.cram.sam_ 553s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o fast ce#1000.sam > ce#1000.tmp.cram 553s ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ 553s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ 553s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o normal ce#1000.sam > ce#1000.tmp.cram 553s ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ 553s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ 553s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o small ce#1000.sam > ce#1000.tmp.cram 553s ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ 553s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ 553s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#1000.sam > ce#1000.tmp.cram 553s ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ 554s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ 554s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#1000.sam > ce#1000.tmp.cram 554s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 554s This is a technology demonstration that should not be used for archival data. 554s ./test_view -@4 -D ce#1000.tmp.cram > ce#1000.tmp.cram.sam_ 554s ./compare_sam.pl -nomd ce#1000.sam ce#1000.tmp.cram.sam_ 554s .. ok 554s 554s test_view testing ce#1000_er.tmp.cram.sam, ref ce.fa: 554s ./test_view -@4 -S -l0 -b ce#1000_er.tmp.cram.sam > ce#1000_er.tmp.cram.tmp.bam 554s ./test_view -@4 ce#1000_er.tmp.cram.tmp.bam > ce#1000_er.tmp.cram.tmp.bam.sam_ 554s ./compare_sam.pl ce#1000_er.tmp.cram.sam ce#1000_er.tmp.cram.tmp.bam.sam_ 554s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#1000_er.tmp.cram.sam > ce#1000_er.tmp.cram.tmp.cram 554s ./test_view -@4 -D ce#1000_er.tmp.cram.tmp.cram > ce#1000_er.tmp.cram.tmp.cram.sam_ 554s ./compare_sam.pl -nomd ce#1000_er.tmp.cram.sam ce#1000_er.tmp.cram.tmp.cram.sam_ 554s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#1000_er.tmp.cram.tmp.bam > ce#1000_er.tmp.cram.tmp.bam.cram 554s ./test_view -@4 ce#1000_er.tmp.cram.tmp.bam.cram > ce#1000_er.tmp.cram.tmp.bam.cram.bam.sam_ 554s ./compare_sam.pl -nomd ce#1000_er.tmp.cram.sam ce#1000_er.tmp.cram.tmp.bam.cram.bam.sam_ 554s .. ok 554s 554s test_view testing ce#2.sam, ref ce.fa: 554s ./test_view -@4 -S -l0 -b ce#2.sam > ce#2.tmp.bam 554s ./test_view -@4 ce#2.tmp.bam > ce#2.tmp.bam.sam_ 554s ./compare_sam.pl ce#2.sam ce#2.tmp.bam.sam_ 554s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#2.sam > ce#2.tmp.cram 554s ./test_view -@4 -D ce#2.tmp.cram > ce#2.tmp.cram.sam_ 554s ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.cram.sam_ 554s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#2.tmp.bam > ce#2.tmp.bam.cram 554s ./test_view -@4 ce#2.tmp.bam.cram > ce#2.tmp.bam.cram.bam.sam_ 554s ./compare_sam.pl -nomd ce#2.sam ce#2.tmp.bam.cram.bam.sam_ 554s .. ok 554s 554s test_view testing ce#5.sam, ref ce.fa: 554s ./test_view -@4 -S -l0 -b ce#5.sam > ce#5.tmp.bam 554s ./test_view -@4 ce#5.tmp.bam > ce#5.tmp.bam.sam_ 554s ./compare_sam.pl ce#5.sam ce#5.tmp.bam.sam_ 554s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#5.sam > ce#5.tmp.cram 554s ./test_view -@4 -D ce#5.tmp.cram > ce#5.tmp.cram.sam_ 554s ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_ 554s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#5.tmp.bam > ce#5.tmp.bam.cram 554s ./test_view -@4 ce#5.tmp.bam.cram > ce#5.tmp.bam.cram.bam.sam_ 554s ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.bam.cram.bam.sam_ 554s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#5.tmp.bam.cram > ce#5.tmp.bam.cram.ms 554s ./test_view -@4 ce#5.tmp.bam.cram.ms > ce#5.tmp.bam.cram.sam_ 554s ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.bam.cram.sam_ 554s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#5.sam > ce#5.tmp.cram 554s ./test_view -@4 -D ce#5.tmp.cram > ce#5.tmp.cram.sam_ 554s ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_ 554s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#5.sam > ce#5.tmp.cram 554s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 554s This is a technology demonstration that should not be used for archival data. 554s ./test_view -@4 -D ce#5.tmp.cram > ce#5.tmp.cram.sam_ 554s ./compare_sam.pl -nomd ce#5.sam ce#5.tmp.cram.sam_ 555s .. ok 555s 555s test_view testing ce#5b.sam, ref ce.fa: 555s ./test_view -@4 -S -l0 -b ce#5b.sam > ce#5b.tmp.bam 555s ./test_view -@4 ce#5b.tmp.bam > ce#5b.tmp.bam.sam_ 555s ./compare_sam.pl ce#5b.sam ce#5b.tmp.bam.sam_ 555s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#5b.sam > ce#5b.tmp.cram 555s ./test_view -@4 -D ce#5b.tmp.cram > ce#5b.tmp.cram.sam_ 555s ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.cram.sam_ 555s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#5b.tmp.bam > ce#5b.tmp.bam.cram 555s ./test_view -@4 ce#5b.tmp.bam.cram > ce#5b.tmp.bam.cram.bam.sam_ 555s ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.bam.cram.bam.sam_ 555s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#5b.tmp.bam.cram > ce#5b.tmp.bam.cram.ms 555s ./test_view -@4 ce#5b.tmp.bam.cram.ms > ce#5b.tmp.bam.cram.sam_ 555s ./compare_sam.pl -nomd ce#5b.sam ce#5b.tmp.bam.cram.sam_ 555s ./test_view -@4 -i reference=ce.fa ce#5b_java.cram > ce#5b_java.tmp.sam_ 555s ./compare_sam.pl -Baux -nomd ce#5b.sam ce#5b_java.tmp.sam_ 555s .. ok 555s 555s test_view testing ce#large_seq.sam, ref ce.fa: 555s ./test_view -@4 -S -l0 -b ce#large_seq.sam > ce#large_seq.tmp.bam 555s ./test_view -@4 ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.sam_ 555s ./compare_sam.pl ce#large_seq.sam ce#large_seq.tmp.bam.sam_ 555s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#large_seq.sam > ce#large_seq.tmp.cram 555s ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ 555s ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ 555s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#large_seq.tmp.bam > ce#large_seq.tmp.bam.cram 555s ./test_view -@4 ce#large_seq.tmp.bam.cram > ce#large_seq.tmp.bam.cram.bam.sam_ 555s ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.bam.cram.bam.sam_ 555s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#large_seq.sam > ce#large_seq.tmp.cram 556s ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ 556s ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ 556s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o fast ce#large_seq.sam > ce#large_seq.tmp.cram 556s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 556s This is a technology demonstration that should not be used for archival data. 556s ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ 556s ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ 556s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o normal ce#large_seq.sam > ce#large_seq.tmp.cram 556s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 556s This is a technology demonstration that should not be used for archival data. 556s ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ 556s ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ 556s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o small ce#large_seq.sam > ce#large_seq.tmp.cram 556s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 556s This is a technology demonstration that should not be used for archival data. 556s ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ 556s ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ 557s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 557s This is a technology demonstration that should not be used for archival data. 557s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#large_seq.sam > ce#large_seq.tmp.cram 557s ./test_view -@4 -D ce#large_seq.tmp.cram > ce#large_seq.tmp.cram.sam_ 557s ./compare_sam.pl -nomd ce#large_seq.sam ce#large_seq.tmp.cram.sam_ 557s .. ok 557s 557s test_view testing ce#supp.sam, ref ce.fa: 557s ./test_view -@4 -S -l0 -b ce#supp.sam > ce#supp.tmp.bam 557s ./test_view -@4 ce#supp.tmp.bam > ce#supp.tmp.bam.sam_ 557s ./compare_sam.pl ce#supp.sam ce#supp.tmp.bam.sam_ 557s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#supp.sam > ce#supp.tmp.cram 557s ./test_view -@4 -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_ 557s ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_ 557s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#supp.tmp.bam > ce#supp.tmp.bam.cram 557s ./test_view -@4 ce#supp.tmp.bam.cram > ce#supp.tmp.bam.cram.bam.sam_ 557s ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.bam.cram.bam.sam_ 557s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=3.1 -o archive ce#supp.sam > ce#supp.tmp.cram 557s ./test_view -@4 -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_ 557s ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_ 557s ./test_view -@4 -t ce.fa -S -l7 -C -o VERSION=4.0 -o archive ce#supp.sam > ce#supp.tmp.cram 557s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 557s This is a technology demonstration that should not be used for archival data. 557s ./test_view -@4 -D ce#supp.tmp.cram > ce#supp.tmp.cram.sam_ 557s ./compare_sam.pl -nomd ce#supp.sam ce#supp.tmp.cram.sam_ 557s .. ok 557s 557s test_view testing ce#tag_depadded.sam, ref ce.fa: 557s ./test_view -@4 -S -l0 -b ce#tag_depadded.sam > ce#tag_depadded.tmp.bam 557s ./test_view -@4 ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.sam_ 557s ./compare_sam.pl ce#tag_depadded.sam ce#tag_depadded.tmp.bam.sam_ 557s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#tag_depadded.sam > ce#tag_depadded.tmp.cram 557s ./test_view -@4 -D ce#tag_depadded.tmp.cram > ce#tag_depadded.tmp.cram.sam_ 557s ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.cram.sam_ 557s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#tag_depadded.tmp.bam > ce#tag_depadded.tmp.bam.cram 557s ./test_view -@4 ce#tag_depadded.tmp.bam.cram > ce#tag_depadded.tmp.bam.cram.bam.sam_ 557s ./compare_sam.pl -nomd ce#tag_depadded.sam ce#tag_depadded.tmp.bam.cram.bam.sam_ 557s .. ok 557s 557s test_view testing ce#tag_padded.sam, ref ce.fa: 557s ./test_view -@4 -S -l0 -b ce#tag_padded.sam > ce#tag_padded.tmp.bam 557s ./test_view -@4 ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.sam_ 557s ./compare_sam.pl ce#tag_padded.sam ce#tag_padded.tmp.bam.sam_ 557s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#tag_padded.sam > ce#tag_padded.tmp.cram 557s ./test_view -@4 -D ce#tag_padded.tmp.cram > ce#tag_padded.tmp.cram.sam_ 557s ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.cram.sam_ 557s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#tag_padded.tmp.bam > ce#tag_padded.tmp.bam.cram 557s ./test_view -@4 ce#tag_padded.tmp.bam.cram > ce#tag_padded.tmp.bam.cram.bam.sam_ 558s ./compare_sam.pl -nomd ce#tag_padded.sam ce#tag_padded.tmp.bam.cram.bam.sam_ 558s .. ok 558s 558s test_view testing ce#unmap.sam, ref ce.fa: 558s ./test_view -@4 -S -l0 -b ce#unmap.sam > ce#unmap.tmp.bam 558s ./test_view -@4 ce#unmap.tmp.bam > ce#unmap.tmp.bam.sam_ 558s ./compare_sam.pl ce#unmap.sam ce#unmap.tmp.bam.sam_ 558s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#unmap.sam > ce#unmap.tmp.cram 558s ./test_view -@4 -D ce#unmap.tmp.cram > ce#unmap.tmp.cram.sam_ 558s ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.cram.sam_ 558s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#unmap.tmp.bam > ce#unmap.tmp.bam.cram 558s ./test_view -@4 ce#unmap.tmp.bam.cram > ce#unmap.tmp.bam.cram.bam.sam_ 558s ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.bam.cram.bam.sam_ 558s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#unmap.tmp.bam.cram > ce#unmap.tmp.bam.cram.ms 558s ./test_view -@4 ce#unmap.tmp.bam.cram.ms > ce#unmap.tmp.bam.cram.sam_ 558s ./compare_sam.pl -nomd ce#unmap.sam ce#unmap.tmp.bam.cram.sam_ 558s .. ok 558s 558s test_view testing ce#unmap1.sam, ref ce.fa: 558s ./test_view -@4 -S -l0 -b ce#unmap1.sam > ce#unmap1.tmp.bam 558s ./test_view -@4 ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.sam_ 558s ./compare_sam.pl ce#unmap1.sam ce#unmap1.tmp.bam.sam_ 558s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#unmap1.sam > ce#unmap1.tmp.cram 558s ./test_view -@4 -D ce#unmap1.tmp.cram > ce#unmap1.tmp.cram.sam_ 558s ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.cram.sam_ 558s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#unmap1.tmp.bam > ce#unmap1.tmp.bam.cram 558s ./test_view -@4 ce#unmap1.tmp.bam.cram > ce#unmap1.tmp.bam.cram.bam.sam_ 558s ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.bam.cram.bam.sam_ 558s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#unmap1.tmp.bam.cram > ce#unmap1.tmp.bam.cram.ms 558s ./test_view -@4 ce#unmap1.tmp.bam.cram.ms > ce#unmap1.tmp.bam.cram.sam_ 558s ./compare_sam.pl -nomd ce#unmap1.sam ce#unmap1.tmp.bam.cram.sam_ 558s .. ok 558s 558s test_view testing ce#unmap2.sam, ref ce.fa: 558s ./test_view -@4 -S -l0 -b ce#unmap2.sam > ce#unmap2.tmp.bam 558s ./test_view -@4 ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.sam_ 558s ./compare_sam.pl ce#unmap2.sam ce#unmap2.tmp.bam.sam_ 558s ./test_view -@4 -t ce.fa -S -C -o VERSION=2.1 ce#unmap2.sam > ce#unmap2.tmp.cram 558s ./test_view -@4 -D ce#unmap2.tmp.cram > ce#unmap2.tmp.cram.sam_ 558s ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.cram.sam_ 558s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 ce#unmap2.tmp.bam > ce#unmap2.tmp.bam.cram 558s ./test_view -@4 ce#unmap2.tmp.bam.cram > ce#unmap2.tmp.bam.cram.bam.sam_ 558s ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.bam.cram.bam.sam_ 558s ./test_view -@4 -t ce.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 ce#unmap2.tmp.bam.cram > ce#unmap2.tmp.bam.cram.ms 558s ./test_view -@4 ce#unmap2.tmp.bam.cram.ms > ce#unmap2.tmp.bam.cram.sam_ 558s ./compare_sam.pl -nomd ce#unmap2.sam ce#unmap2.tmp.bam.cram.sam_ 558s .. ok 558s 558s test_view testing md#1.sam, ref md.fa: 558s ./test_view -@4 -S -l0 -b md#1.sam > md#1.tmp.bam 558s ./test_view -@4 md#1.tmp.bam > md#1.tmp.bam.sam_ 558s ./compare_sam.pl md#1.sam md#1.tmp.bam.sam_ 558s ./test_view -@4 -t md.fa -S -C -o VERSION=2.1 md#1.sam > md#1.tmp.cram 558s ./test_view -@4 -D md#1.tmp.cram > md#1.tmp.cram.sam_ 558s ./compare_sam.pl md#1.sam md#1.tmp.cram.sam_ 558s ./test_view -@4 -t md.fa -C -o VERSION=3.0 md#1.tmp.bam > md#1.tmp.bam.cram 558s ./test_view -@4 md#1.tmp.bam.cram > md#1.tmp.bam.cram.bam.sam_ 558s ./compare_sam.pl md#1.sam md#1.tmp.bam.cram.bam.sam_ 558s .. ok 558s 558s test_view testing xx#blank.sam, ref xx.fa: 558s ./test_view -@4 -S -l0 -b xx#blank.sam > xx#blank.tmp.bam 558s ./test_view -@4 xx#blank.tmp.bam > xx#blank.tmp.bam.sam_ 558s ./compare_sam.pl xx#blank.sam xx#blank.tmp.bam.sam_ 558s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#blank.sam > xx#blank.tmp.cram 558s ./test_view -@4 -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_ 558s ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_ 558s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#blank.tmp.bam > xx#blank.tmp.bam.cram 558s ./test_view -@4 xx#blank.tmp.bam.cram > xx#blank.tmp.bam.cram.bam.sam_ 558s ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.bam.cram.bam.sam_ 558s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#blank.tmp.bam.cram > xx#blank.tmp.bam.cram.ms 558s ./test_view -@4 xx#blank.tmp.bam.cram.ms > xx#blank.tmp.bam.cram.sam_ 558s ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.bam.cram.sam_ 558s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#blank.sam > xx#blank.tmp.cram 558s ./test_view -@4 -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_ 558s ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_ 558s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#blank.sam > xx#blank.tmp.cram 558s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 558s This is a technology demonstration that should not be used for archival data. 558s ./test_view -@4 -D xx#blank.tmp.cram > xx#blank.tmp.cram.sam_ 558s ./compare_sam.pl -nomd xx#blank.sam xx#blank.tmp.cram.sam_ 558s .. ok 558s 558s test_view testing xx#large_aux.sam, ref xx.fa: 558s ./test_view -@4 -S -l0 -b xx#large_aux.sam > xx#large_aux.tmp.bam 558s ./test_view -@4 xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.sam_ 558s ./compare_sam.pl xx#large_aux.sam xx#large_aux.tmp.bam.sam_ 558s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#large_aux.sam > xx#large_aux.tmp.cram 558s ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ 559s ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ 559s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#large_aux.tmp.bam > xx#large_aux.tmp.bam.cram 559s ./test_view -@4 xx#large_aux.tmp.bam.cram > xx#large_aux.tmp.bam.cram.bam.sam_ 559s ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.bam.cram.bam.sam_ 559s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#large_aux.sam > xx#large_aux.tmp.cram 559s ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ 559s ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ 559s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o fast xx#large_aux.sam > xx#large_aux.tmp.cram 559s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 559s This is a technology demonstration that should not be used for archival data. 559s ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ 559s ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ 559s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o normal xx#large_aux.sam > xx#large_aux.tmp.cram 559s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 559s This is a technology demonstration that should not be used for archival data. 559s ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ 559s ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ 559s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o small xx#large_aux.sam > xx#large_aux.tmp.cram 559s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 559s This is a technology demonstration that should not be used for archival data. 559s ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ 559s ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ 559s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#large_aux.sam > xx#large_aux.tmp.cram 559s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 559s This is a technology demonstration that should not be used for archival data. 559s ./test_view -@4 -D xx#large_aux.tmp.cram > xx#large_aux.tmp.cram.sam_ 559s ./compare_sam.pl -nomd xx#large_aux.sam xx#large_aux.tmp.cram.sam_ 559s ./test_view -@4 -i reference=xx.fa xx#large_aux_java.cram > xx#large_aux_java.tmp.sam_ 559s [W::sanitise_SQ_lines] Header @SQ length mismatch for ref xx, 30 vs 20 559s ./compare_sam.pl -Baux -nomd xx#large_aux.sam xx#large_aux_java.tmp.sam_ 559s .. ok 559s 559s test_view testing xx#large_aux2.sam, ref xx.fa: 559s ./test_view -@4 -S -l0 -b xx#large_aux2.sam > xx#large_aux2.tmp.bam 559s ./test_view -@4 xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.sam_ 559s ./compare_sam.pl xx#large_aux2.sam xx#large_aux2.tmp.bam.sam_ 559s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#large_aux2.sam > xx#large_aux2.tmp.cram 559s ./test_view -@4 -D xx#large_aux2.tmp.cram > xx#large_aux2.tmp.cram.sam_ 559s ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.cram.sam_ 559s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#large_aux2.tmp.bam > xx#large_aux2.tmp.bam.cram 559s ./test_view -@4 xx#large_aux2.tmp.bam.cram > xx#large_aux2.tmp.bam.cram.bam.sam_ 559s ./compare_sam.pl -nomd xx#large_aux2.sam xx#large_aux2.tmp.bam.cram.bam.sam_ 559s .. ok 559s 559s test_view testing xx#MD.sam, ref xx.fa: 559s ./test_view -@4 -S -l0 -b xx#MD.sam > xx#MD.tmp.bam 559s ./test_view -@4 xx#MD.tmp.bam > xx#MD.tmp.bam.sam_ 559s ./compare_sam.pl xx#MD.sam xx#MD.tmp.bam.sam_ 559s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#MD.sam > xx#MD.tmp.cram 559s ./test_view -@4 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ 559s ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_ 559s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#MD.tmp.bam > xx#MD.tmp.bam.cram 559s ./test_view -@4 xx#MD.tmp.bam.cram > xx#MD.tmp.bam.cram.bam.sam_ 559s ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.bam.cram.bam.sam_ 559s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#MD.sam > xx#MD.tmp.cram 559s ./test_view -@4 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ 559s ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_ 559s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#MD.sam > xx#MD.tmp.cram 559s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 559s This is a technology demonstration that should not be used for archival data. 559s ./test_view -@4 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ 559s ./compare_sam.pl -nomd xx#MD.sam xx#MD.tmp.cram.sam_ 559s .. ok 559s 559s test_view testing xx#MD2.sam, ref xx.fa: 559s ./test_view -@4 -S -l0 -b xx#MD2.sam > xx#MD2.tmp.bam 559s ./test_view -@4 xx#MD2.tmp.bam > xx#MD2.tmp.bam.sam_ 559s ./compare_sam.pl xx#MD2.sam xx#MD2.tmp.bam.sam_ 560s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#MD2.sam > xx#MD2.tmp.cram 560s ./test_view -@4 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_ 560s ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.cram.sam_ 560s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#MD2.tmp.bam > xx#MD2.tmp.bam.cram 560s ./test_view -@4 xx#MD2.tmp.bam.cram > xx#MD2.tmp.bam.cram.bam.sam_ 560s ./compare_sam.pl -nomd xx#MD2.sam xx#MD2.tmp.bam.cram.bam.sam_ 560s .. ok 560s 560s test_view testing xx#minimal.sam, ref xx.fa: 560s ./test_view -@4 -S -l0 -b xx#minimal.sam > xx#minimal.tmp.bam 560s ./test_view -@4 xx#minimal.tmp.bam > xx#minimal.tmp.bam.sam_ 560s ./compare_sam.pl xx#minimal.sam xx#minimal.tmp.bam.sam_ 560s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#minimal.sam > xx#minimal.tmp.cram 560s ./test_view -@4 -D xx#minimal.tmp.cram > xx#minimal.tmp.cram.sam_ 560s ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.cram.sam_ 560s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#minimal.tmp.bam > xx#minimal.tmp.bam.cram 560s ./test_view -@4 xx#minimal.tmp.bam.cram > xx#minimal.tmp.bam.cram.bam.sam_ 560s ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.bam.cram.bam.sam_ 560s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#minimal.tmp.bam.cram > xx#minimal.tmp.bam.cram.ms 560s ./test_view -@4 xx#minimal.tmp.bam.cram.ms > xx#minimal.tmp.bam.cram.sam_ 560s ./compare_sam.pl -nomd xx#minimal.sam xx#minimal.tmp.bam.cram.sam_ 560s .. ok 560s 560s test_view testing xx#pair.sam, ref xx.fa: 560s ./test_view -@4 -S -l0 -b xx#pair.sam > xx#pair.tmp.bam 560s ./test_view -@4 xx#pair.tmp.bam > xx#pair.tmp.bam.sam_ 560s ./compare_sam.pl xx#pair.sam xx#pair.tmp.bam.sam_ 560s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#pair.sam > xx#pair.tmp.cram 560s ./test_view -@4 -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_ 560s ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_ 560s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#pair.tmp.bam > xx#pair.tmp.bam.cram 560s ./test_view -@4 xx#pair.tmp.bam.cram > xx#pair.tmp.bam.cram.bam.sam_ 560s ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.bam.cram.bam.sam_ 560s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#pair.sam > xx#pair.tmp.cram 560s ./test_view -@4 -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_ 560s ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_ 560s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#pair.sam > xx#pair.tmp.cram 560s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 560s This is a technology demonstration that should not be used for archival data. 560s ./test_view -@4 -D xx#pair.tmp.cram > xx#pair.tmp.cram.sam_ 560s ./compare_sam.pl -nomd xx#pair.sam xx#pair.tmp.cram.sam_ 560s .. ok 560s 560s test_view testing xx#repeated.sam, ref xx.fa: 560s ./test_view -@4 -S -l0 -b xx#repeated.sam > xx#repeated.tmp.bam 560s ./test_view -@4 xx#repeated.tmp.bam > xx#repeated.tmp.bam.sam_ 560s ./compare_sam.pl xx#repeated.sam xx#repeated.tmp.bam.sam_ 560s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#repeated.sam > xx#repeated.tmp.cram 560s ./test_view -@4 -D xx#repeated.tmp.cram > xx#repeated.tmp.cram.sam_ 560s ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.cram.sam_ 560s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#repeated.tmp.bam > xx#repeated.tmp.bam.cram 560s ./test_view -@4 xx#repeated.tmp.bam.cram > xx#repeated.tmp.bam.cram.bam.sam_ 560s ./compare_sam.pl -nomd xx#repeated.sam xx#repeated.tmp.bam.cram.bam.sam_ 560s .. ok 560s 560s test_view testing xx#rg.sam, ref xx.fa: 560s ./test_view -@4 -S -l0 -b xx#rg.sam > xx#rg.tmp.bam 560s ./test_view -@4 xx#rg.tmp.bam > xx#rg.tmp.bam.sam_ 560s ./compare_sam.pl xx#rg.sam xx#rg.tmp.bam.sam_ 560s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#rg.sam > xx#rg.tmp.cram 560s ./test_view -@4 -D xx#rg.tmp.cram > xx#rg.tmp.cram.sam_ 560s ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.cram.sam_ 560s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#rg.tmp.bam > xx#rg.tmp.bam.cram 560s ./test_view -@4 xx#rg.tmp.bam.cram > xx#rg.tmp.bam.cram.bam.sam_ 560s ./compare_sam.pl -nomd xx#rg.sam xx#rg.tmp.bam.cram.bam.sam_ 560s .. ok 560s 560s test_view testing xx#tlen.sam, ref xx.fa: 560s ./test_view -@4 -S -l0 -b xx#tlen.sam > xx#tlen.tmp.bam 560s ./test_view -@4 xx#tlen.tmp.bam > xx#tlen.tmp.bam.sam_ 560s ./compare_sam.pl xx#tlen.sam xx#tlen.tmp.bam.sam_ 560s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#tlen.sam > xx#tlen.tmp.cram 560s ./test_view -@4 -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_ 560s ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_ 560s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#tlen.tmp.bam > xx#tlen.tmp.bam.cram 560s ./test_view -@4 xx#tlen.tmp.bam.cram > xx#tlen.tmp.bam.cram.bam.sam_ 560s ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.bam.cram.bam.sam_ 560s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#tlen.tmp.bam.cram > xx#tlen.tmp.bam.cram.ms 560s ./test_view -@4 xx#tlen.tmp.bam.cram.ms > xx#tlen.tmp.bam.cram.sam_ 560s ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.bam.cram.sam_ 560s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=3.1 -o archive xx#tlen.sam > xx#tlen.tmp.cram 560s ./test_view -@4 -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_ 560s ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_ 561s ./test_view -@4 -t xx.fa -S -l7 -C -o VERSION=4.0 -o archive xx#tlen.sam > xx#tlen.tmp.cram 561s [W::cram_set_voption] CRAM version 4.0 is still a draft and subject to change. 561s This is a technology demonstration that should not be used for archival data. 561s ./test_view -@4 -D xx#tlen.tmp.cram > xx#tlen.tmp.cram.sam_ 561s ./compare_sam.pl -nomd xx#tlen.sam xx#tlen.tmp.cram.sam_ 561s .. ok 561s 561s test_view testing xx#tlen2.sam, ref xx.fa: 561s ./test_view -@4 -S -l0 -b xx#tlen2.sam > xx#tlen2.tmp.bam 561s ./test_view -@4 xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.sam_ 561s ./compare_sam.pl xx#tlen2.sam xx#tlen2.tmp.bam.sam_ 561s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#tlen2.sam > xx#tlen2.tmp.cram 561s ./test_view -@4 -D xx#tlen2.tmp.cram > xx#tlen2.tmp.cram.sam_ 561s ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.cram.sam_ 561s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#tlen2.tmp.bam > xx#tlen2.tmp.bam.cram 561s ./test_view -@4 xx#tlen2.tmp.bam.cram > xx#tlen2.tmp.bam.cram.bam.sam_ 561s ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.bam.cram.bam.sam_ 561s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#tlen2.tmp.bam.cram > xx#tlen2.tmp.bam.cram.ms 561s ./test_view -@4 xx#tlen2.tmp.bam.cram.ms > xx#tlen2.tmp.bam.cram.sam_ 561s ./compare_sam.pl -nomd xx#tlen2.sam xx#tlen2.tmp.bam.cram.sam_ 561s .. ok 561s 561s test_view testing xx#triplet.sam, ref xx.fa: 561s ./test_view -@4 -S -l0 -b xx#triplet.sam > xx#triplet.tmp.bam 561s ./test_view -@4 xx#triplet.tmp.bam > xx#triplet.tmp.bam.sam_ 561s ./compare_sam.pl xx#triplet.sam xx#triplet.tmp.bam.sam_ 561s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#triplet.sam > xx#triplet.tmp.cram 561s ./test_view -@4 -D xx#triplet.tmp.cram > xx#triplet.tmp.cram.sam_ 561s ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.cram.sam_ 561s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#triplet.tmp.bam > xx#triplet.tmp.bam.cram 561s ./test_view -@4 xx#triplet.tmp.bam.cram > xx#triplet.tmp.bam.cram.bam.sam_ 561s ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.bam.cram.bam.sam_ 561s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 -o seqs_per_slice=7 -o slices_per_container=5 xx#triplet.tmp.bam.cram > xx#triplet.tmp.bam.cram.ms 561s ./test_view -@4 xx#triplet.tmp.bam.cram.ms > xx#triplet.tmp.bam.cram.sam_ 561s ./compare_sam.pl -nomd xx#triplet.sam xx#triplet.tmp.bam.cram.sam_ 561s .. ok 561s 561s test_view testing xx#unsorted.sam, ref xx.fa: 561s ./test_view -@4 -S -l0 -b xx#unsorted.sam > xx#unsorted.tmp.bam 561s ./test_view -@4 xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.sam_ 561s ./compare_sam.pl xx#unsorted.sam xx#unsorted.tmp.bam.sam_ 561s ./test_view -@4 -t xx.fa -S -C -o VERSION=2.1 xx#unsorted.sam > xx#unsorted.tmp.cram 561s ./test_view -@4 -D xx#unsorted.tmp.cram > xx#unsorted.tmp.cram.sam_ 561s ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.cram.sam_ 561s ./test_view -@4 -t xx.fa -C -o VERSION=3.0 xx#unsorted.tmp.bam > xx#unsorted.tmp.bam.cram 561s ./test_view -@4 xx#unsorted.tmp.bam.cram > xx#unsorted.tmp.bam.cram.bam.sam_ 561s ./compare_sam.pl -nomd xx#unsorted.sam xx#unsorted.tmp.bam.cram.bam.sam_ 561s .. ok 561s 561s test_view testing embed_ref=2: 561s ./test_view -@4 -C -p ce#1000_er.tmp.cram ce#1000.sam 561s [W::cram_get_ref] Failed to populate reference for id 0 561s [W::cram_write_SAM_hdr] No M5 tags present and could not find reference 561s [W::cram_write_SAM_hdr] Enabling embed_ref=2 option 561s [W::cram_write_SAM_hdr] NOTE: the CRAM file will be bigger than using an external reference 561s ./test_view -@4 -p ce#1000_er.tmp.cram.sam ce#1000_er.tmp.cram 561s ./compare_sam.pl ce#1000.sam ce#1000_er.tmp.cram.sam 561s .. ok 561s 561s test_view testing region queries: 561s ./test_view -@4 -i reference=ce.fa range.cram CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp 561s ./compare_sam.pl range.tmp range.out 561s ./test_view -@4 range.bam CHROMOSOME_II:2980-2980 CHROMOSOME_IV:1500-1500 CHROMOSOME_II:2980-2980 CHROMOSOME_I:1000-1100 > range.tmp 561s ./compare_sam.pl range.tmp range.out 561s .. ok 561s 561s test_view testing BAM files with absent @SQ lines: 561s ./test_view -@4 -p no_hdr_sq_1.tmp.sam no_hdr_sq_1.bam 561s ./compare_sam.pl no_hdr_sq_1.tmp.sam no_hdr_sq_1.expected.sam 561s ./test_view -@4 -p no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.bam CHROMOSOME_I 561s ./compare_sam.pl no_hdr_sq_1.chr1.tmp.sam no_hdr_sq_1.expected.sam 561s .. ok 561s 561s test_view testing large (> 2Gbases) positions: 561s ./test_view -@4 -z -p longrefs/longref.tmp.sam.gz -x longrefs/longref.tmp.sam.gz.csi.otf -m 14 longrefs/longref.sam 561s ./test_view -@4 -p longrefs/longref.tmp.sam_ longrefs/longref.tmp.sam.gz 561s ./compare_sam.pl longrefs/longref.sam longrefs/longref.tmp.sam_ 561s test_view: 561s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_index -c longrefs/longref.tmp.sam.gz 561s .. ok 561s 561s ./test_view -@4 -p longrefs/longref_itr.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003 561s ./compare_sam.pl longrefs/longref_itr.expected.sam longrefs/longref_itr.tmp.sam 561s ./test_view -@4 -M -p longrefs/longref_multi.tmp.sam longrefs/longref.tmp.sam.gz CHROMOSOME_I:10000000000-10000000003 CHROMOSOME_I:10000000100-10000000110 561s ./compare_sam.pl longrefs/longref_multi.expected.sam longrefs/longref_multi.tmp.sam 561s .. ok 561s 561s 561s test_MD testing xx#MD.sam, ref xx.fa: 561s ./test_view -o store_nm=1 -o store_md=1 -t xx.fa -C xx#MD.sam > xx#MD.tmp.cram 561s ./test_view -i decode_md=0 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ 561s ./compare_sam.pl xx#MD.sam xx#MD.tmp.cram.sam_ 561s ./test_view -t xx.fa -C xx#MD.sam > xx#MD.tmp.cram 561s ./test_view -i decode_md=0 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ 561s ./compare_sam.pl -partialmd=2 xx#MD.sam xx#MD.tmp.cram.sam_ 561s Checking for MD/NM in xx#MD.sam 561s ./test_view -t xx.fa -C xx#MD.sam > xx#MD.tmp.cram 561s ./test_view -i decode_md=1 -D xx#MD.tmp.cram > xx#MD.tmp.cram.sam_ 561s ./compare_sam.pl -partialmd=1 xx#MD.sam xx#MD.tmp.cram.sam_ 561s .. ok 561s 561s 561s test_MD testing xx#MD2.sam, ref xx.fa: 561s ./test_view -o store_nm=1 -o store_md=1 -t xx.fa -C xx#MD2.sam > xx#MD2.tmp.cram 561s ./test_view -i decode_md=0 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_ 561s ./compare_sam.pl xx#MD2.sam xx#MD2.tmp.cram.sam_ 561s ./test_view -t xx.fa -C xx#MD2.sam > xx#MD2.tmp.cram 562s ./test_view -i decode_md=0 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_ 562s ./compare_sam.pl -partialmd=2 xx#MD2.sam xx#MD2.tmp.cram.sam_ 562s ./test_view -t xx.fa -C xx#MD2.sam > xx#MD2.tmp.cram 562s ./test_view -i decode_md=1 -D xx#MD2.tmp.cram > xx#MD2.tmp.cram.sam_ 562s ./compare_sam.pl -partialmd=1 xx#MD2.sam xx#MD2.tmp.cram.sam_ 562s .. ok 562s 562s test_vcf_api: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-vcf-api /tmp/s1GRbSvtoy/test-vcf-api.bcf 562s .. ok 562s 562s test_bcf2vcf: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/tabix/vcf_file.bcf 562s .. ok 562s 562s test_vcf_sweep: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-vcf-sweep /tmp/s1GRbSvtoy/test-vcf-api.bcf 562s .. ok 562s 562s test_vcf_various: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/htsfile -ch /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-vcf-hdr-in.vcf 562s .. ok 562s 562s test_vcf_various: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/htsfile -c /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/formatcols.vcf 562s .. ok 562s 562s test_vcf_various: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/htsfile -c /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/noroundtrip.vcf 562s .. ok 562s 562s test_vcf_various: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/htsfile -c /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/formatmissing.vcf 562s .. ok 562s 562s test_vcf_various: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/htsfile -c /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/vcf_meta_meta.vcf 562s .. ok 562s 562s test_vcf_various: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/modhdr.vcf.gz chr22:1-2 562s .. ok 562s 562s test-bcf-sr: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/s1GRbSvtoy -s 74452500 562s .. ok 562s 562s test-bcf-sr: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/s1GRbSvtoy -s 34270147 562s .. ok 562s 562s test-bcf-sr: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/s1GRbSvtoy -s 11108528 562s .. ok 562s 562s test-bcf-sr: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/s1GRbSvtoy -s 42233895 562s .. ok 562s 562s test-bcf-sr: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/s1GRbSvtoy -s 8111117 562s .. ok 562s 562s test-bcf-sr: 562s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/s1GRbSvtoy -s 85644070 563s .. ok 563s 563s test-bcf-sr: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/s1GRbSvtoy -s 49879942 563s .. ok 563s 563s test-bcf-sr: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/s1GRbSvtoy -s 47881429 563s .. ok 563s 563s test-bcf-sr: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/s1GRbSvtoy -s 69081244 563s .. ok 563s 563s test-bcf-sr: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr.pl -t /tmp/s1GRbSvtoy -s 83459376 563s .. ok 563s 563s test_bcf_sr_no_index: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr --no-index -p all --args /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bcf-sr/merge.noidx.a.vcf /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bcf-sr/merge.noidx.b.vcf /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bcf-sr/merge.noidx.c.vcf 2> /tmp/s1GRbSvtoy/no_index_1.err 563s .. ok 563s 563s test_bcf_sr_no_index: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr --no-index -p all --args /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bcf-sr/merge.noidx.a.vcf /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bcf-sr/merge.noidx.hdr_order.vcf > /tmp/s1GRbSvtoy/no_index_2.out 2> /tmp/s1GRbSvtoy/no_index_2.err (expected fail) 563s .. ok 563s 563s test_bcf_sr_no_index: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr --no-index -p all --args /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bcf-sr/merge.noidx.a.vcf /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bcf-sr/merge.noidx.rec_order.vcf > /tmp/s1GRbSvtoy/no_index_3.out 2> /tmp/s1GRbSvtoy/no_index_3.err (expected fail) 563s .. ok 563s 563s test_bcf_sr_no_index: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr --no-index -p all --args /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bcf-sr/merge.noidx.rec_order.vcf /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bcf-sr/merge.noidx.a.vcf > /tmp/s1GRbSvtoy/no_index_4.out 2> /tmp/s1GRbSvtoy/no_index_4.err (expected fail) 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -b -p /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf -x /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf.csi /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bcf-sr/weird-chr-names.vcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_1.out.vcf -r '1' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_2.out.vcf -r '1:1-2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_3.out.vcf -r '1:1,1:2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_4.out.vcf -r '1:1-1' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_5.out.vcf -r '{1:1}' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_6.out.vcf -r '{1:1}:1-2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_7.out.vcf -r '{1:1}:1,{1:1}:2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_8.out.vcf -r '{1:1}:1-1' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_9.out.vcf -r '{1:1-1}' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_10.out.vcf -r '{1:1-1}:1-2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_11.out.vcf -r '{1:1-1}:1,{1:1-1}:2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_12.out.vcf -r '{1:1-1}:1-1' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_13.out.vcf -r '{1:1-1}-2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf (expected fail) 563s [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2 563s Failed to set regions 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_14.out.vcf -t '1' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_15.out.vcf -t '1:1-2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_16.out.vcf -t '1:1,1:2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_17.out.vcf -t '1:1-1' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_18.out.vcf -t '{1:1}' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_19.out.vcf -t '{1:1}:1-2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_20.out.vcf -t '{1:1}:1,{1:1}:2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_21.out.vcf -t '{1:1}:1-1' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_22.out.vcf -t '{1:1-1}' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_23.out.vcf -t '{1:1-1}:1-2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_24.out.vcf -t '{1:1-1}:1,{1:1-1}:2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_25.out.vcf -t '{1:1-1}:1-1' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf 563s [E::_regions_init_string] Could not parse the region(s): {1:1-1}-2 563s Failed to set targets 563s .. ok 563s 563s test_bcf_sr_range: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-sr -O vcf -o /tmp/s1GRbSvtoy/range_test_26.out.vcf -t '{1:1-1}-2' --args /tmp/s1GRbSvtoy/weird-chr-names.vcf.bcf (expected fail) 563s .. ok 563s 563s test_command: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf-translate - 563s .. ok 563s 563s test_convert_padded_header: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -t ce.fa -C /tmp/s1GRbSvtoy/headernul0.bam 563s .. ok 563s 563s test_convert_padded_header: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -t ce.fa -C /tmp/s1GRbSvtoy/headernul1.bam 563s .. ok 563s 563s test_convert_padded_header: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_view -t ce.fa -C /tmp/s1GRbSvtoy/headernul678.bam 563s .. ok 563s 563s test_rebgzip: Alternate zlib/deflate library detected 563s test_rebgzip: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/bgzip -I /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bgziptest.txt.tmp.gz.gzi -c -g /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/bgziptest.txt 563s .. ok 563s 563s test-logging: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-logging.pl 563s .. ok 563s 563s test_plugin_loading: 563s HTS_PATH=/tmp/autopkgtest.twgBPe/autopkgtest_tmp /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/with-shlib.sh /tmp/autopkgtest.twgBPe/autopkgtest_tmp/htsfile https://localhost:99999/invalid_port 563s .. ok 563s 563s test_realn: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_realn -f /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn01.fa -i /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn01.sam -o - 563s .. ok 563s 563s test_realn: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_realn -f /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02.sam -o - 563s .. ok 563s 563s test_realn: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_realn -a -f /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn01.fa -i /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn01.sam -o - 563s .. ok 563s 563s test_realn: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_realn -a -f /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02.sam -o - 563s .. ok 563s 563s test_realn: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_realn -e -f /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn01.fa -i /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn01.sam -o - 563s .. ok 563s 563s test_realn: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_realn -e -f /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02.sam -o - 563s .. ok 563s 563s test_realn: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_realn -r -f /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02-r.sam -o - 563s .. ok 563s 563s test_realn: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_realn -a -f /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02_exp.sam -o - 563s .. ok 563s 563s test_realn: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_realn -f /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02.fa -i /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn02_exp-a.sam -o - 563s .. ok 563s 563s test_realn: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test_realn -f /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn03.fa -e -i /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/realn03.sam -o - 563s .. ok 563s 563s test-bcf_set_variant_type: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/test-bcf_set_variant_type 563s .. ok 563s 563s run_annot_tsv: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 563s .. ok 563s 563s run_annot_tsv: 563s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt 563s .. ok 563s 563s run_annot_tsv: 563s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 563s .. ok 563s 563s run_annot_tsv: 563s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 563s .. ok 563s 563s run_annot_tsv: 563s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt 563s .. ok 563s 563s run_annot_tsv: 563s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -c chr,beg,end -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -c chr,beg,end -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -c chr,beg,end -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl,value:overlap,value -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl,value:overlap,value -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl,value:overlap,value -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -O 0.5 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -O 0.5 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -O 0.5 -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -rO 0.5 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -rO 0.5 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -rO 0.5 -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups --max-annots 2 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups --max-annots 2 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.1.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap --allow-dups --max-annots 2 -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.1.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4,value:5,value -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4,value:5,value -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4,value:5,value -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -a nbp,frac -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -a nbp,frac -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f value,4:value,5 -a nbp,frac -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups --max-annots 2 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups --max-annots 2 -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.2.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:1,2,3 -f 4:5 --allow-dups --max-annots 2 -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.2.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -a nbp,frac -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.3.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.3.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.3.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -a nbp,frac -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.3.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.3.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl:overlap -a nbp,frac -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.3.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -m 1:1 -f 1:1 -a nbp,frac -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.4.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.4.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.4.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -m 1:1 -f 1:1 -a nbp,frac -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.4.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.4.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -m 1:1 -f 1:1 -a nbp,frac -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.4.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -a nbp,frac -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.5.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.5.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.5.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -a nbp,frac -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.5.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.5.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 2,3,4:2,3,4 -a nbp,frac -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.5.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -a nbp -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.6.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.6.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.6.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -a nbp -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.6.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.6.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -a nbp -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.6.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -f overlap -H -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.7.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.7.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.7.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -f overlap -H -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.7.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.7.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,2:1,2,2 -f overlap -H -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.7.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c chr,beg,end:chr,start,end -m sample -f is_tp -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.8.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.8.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.8.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c chr,beg,end:chr,start,end -m sample -f is_tp -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.8.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.8.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c chr,beg,end:chr,start,end -m sample -f is_tp -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.8.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:chr,beg,end -a nbp,frac,cnt -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.9.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.9.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.9.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:chr,beg,end -a nbp,frac,cnt -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.9.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.9.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -c 1,2,3:chr,beg,end -a nbp,frac,cnt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.9.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -f smpl -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -x -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -x -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -x -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -m smpl -f smpl -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -m smpl -f smpl -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -m smpl -f smpl -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -m smpl -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -m smpl -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -m smpl -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -m smpl -x -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -m smpl -x -s /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt 564s .. ok 564s 564s run_annot_tsv: 564s cat /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/src.10.txt | /tmp/autopkgtest.twgBPe/autopkgtest_tmp/annot-tsv -m smpl -x -t /tmp/autopkgtest.twgBPe/autopkgtest_tmp/test/annot-tsv/dst.10.txt 564s .. ok 564s 564s 564s Number of tests: 564s total .. 291 564s passed .. 291 564s failed .. 0 564s 564s + echo PASS 564s PASS 564s autopkgtest [15:37:07]: test run-unit-test: -----------------------] 565s autopkgtest [15:37:08]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 565s run-unit-test PASS 565s autopkgtest [15:37:08]: @@@@@@@@@@@@@@@@@@@@ summary 565s run-unit-test PASS 694s Creating nova instance adt-noble-ppc64el-htslib-20240327-152743-juju-7f2275-prod-proposed-migration-environment-3-d8ad0338-8b96-44c2-b417-9cbcc705d99d from image adt/ubuntu-noble-ppc64el-server-20240327.img (UUID 74f6a06c-176c-47b3-992a-25e3d3e7cc4c)...