0s autopkgtest [21:59:27]: starting date and time: 2024-03-23 21:59:27+0000 0s autopkgtest [21:59:27]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [21:59:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.einlotri/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:sra-sdk --apt-upgrade htsjdk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=sra-sdk/3.0.3+dfsg-6ubuntu4 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-9.secgroup --name adt-noble-ppc64el-htsjdk-20240323-215927-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 108s autopkgtest [22:01:15]: testbed dpkg architecture: ppc64el 109s autopkgtest [22:01:16]: testbed apt version: 2.7.12 109s autopkgtest [22:01:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 110s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 110s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 110s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 110s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4028 kB] 112s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [661 kB] 112s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 112s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 112s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 112s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4284 kB] 113s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 113s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 113s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 121s Fetched 9722 kB in 4s (2296 kB/s) 121s Reading package lists... 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s Calculating upgrade... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s sh: Attempting to set up Debian/Ubuntu apt sources automatically 125s sh: Distribution appears to be Ubuntu 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s eatmydata is already the newest version (131-1). 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s dbus is already the newest version (1.14.10-4ubuntu1). 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s rng-tools-debian is already the newest version (2.4). 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s The following packages will be REMOVED: 127s cloud-init* python3-configobj* python3-debconf* 127s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 127s After this operation, 3256 kB disk space will be freed. 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 127s Removing cloud-init (24.1.2-0ubuntu1) ... 127s Removing python3-configobj (5.0.8-3) ... 127s Removing python3-debconf (1.5.86) ... 128s Processing triggers for man-db (2.12.0-3) ... 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69767 files and directories currently installed.) 128s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 129s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 129s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 129s invoke-rc.d: policy-rc.d denied execution of try-restart. 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s linux-generic is already the newest version (6.8.0-11.11+1). 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 130s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 130s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 132s Reading package lists... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Calculating upgrade... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s autopkgtest [22:01:40]: rebooting testbed after setup commands that affected boot 303s autopkgtest [22:04:30]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 311s autopkgtest [22:04:38]: @@@@@@@@@@@@@@@@@@@@ apt-source htsjdk 316s Get:1 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (dsc) [2649 B] 316s Get:2 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (tar) [46.9 MB] 316s Get:3 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (diff) [39.4 kB] 316s gpgv: Signature made Sun Feb 11 21:45:33 2024 UTC 316s gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 316s gpgv: Can't check signature: No public key 316s dpkg-source: warning: cannot verify inline signature for ./htsjdk_4.1.0+dfsg-1.dsc: no acceptable signature found 317s autopkgtest [22:04:44]: testing package htsjdk version 4.1.0+dfsg-1 317s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 318s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 318s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 318s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 318s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 318s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 318s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 318s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 318s autopkgtest [22:04:45]: build not needed 361s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 361s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 361s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 361s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s autopkgtest [22:05:29]: @@@@@@@@@@@@@@@@@@@@ summary 362s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 362s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 374s Creating nova instance adt-noble-ppc64el-htsjdk-20240323-215927-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...