0s autopkgtest [15:46:44]: starting date and time: 2024-03-23 15:46:44+0000 0s autopkgtest [15:46:44]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:46:44]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.t52n93gg/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade htsjdk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-5.secgroup --name adt-noble-ppc64el-htsjdk-20240323-154644-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 315s autopkgtest [15:51:59]: testbed dpkg architecture: ppc64el 315s autopkgtest [15:51:59]: testbed apt version: 2.7.12 315s autopkgtest [15:51:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 316s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 316s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 316s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 316s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 316s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 317s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 317s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 317s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 317s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 317s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 317s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 317s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 317s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 321s Fetched 9623 kB in 3s (3512 kB/s) 321s Reading package lists... 324s Reading package lists... 324s Building dependency tree... 324s Reading state information... 324s Calculating upgrade... 324s The following packages will be REMOVED: 324s libssl3 324s The following NEW packages will be installed: 324s libssl3t64 324s The following packages have been kept back: 324s curl 324s The following packages will be upgraded: 324s openssl 324s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 324s Need to get 3151 kB of archives. 324s After this operation, 73.7 kB of additional disk space will be used. 324s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 325s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 325s Fetched 3151 kB in 1s (4572 kB/s) 325s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 325s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 325s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 325s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 325s wget depends on libssl3 (>= 3.0.0). 325s tnftp depends on libssl3 (>= 3.0.0). 325s tcpdump depends on libssl3 (>= 3.0.0). 325s systemd-resolved depends on libssl3 (>= 3.0.0). 325s systemd depends on libssl3 (>= 3.0.0). 325s sudo depends on libssl3 (>= 3.0.0). 325s rsync depends on libssl3 (>= 3.0.0). 325s python3-cryptography depends on libssl3 (>= 3.0.0). 325s openssh-server depends on libssl3 (>= 3.0.10). 325s openssh-client depends on libssl3 (>= 3.0.10). 325s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 325s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 325s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 325s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 325s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 325s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 325s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 325s libnvme1 depends on libssl3 (>= 3.0.0). 325s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 325s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 325s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 325s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 325s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 325s kmod depends on libssl3 (>= 3.0.0). 325s dhcpcd-base depends on libssl3 (>= 3.0.0). 325s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 325s 325s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 325s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 325s Selecting previously unselected package libssl3t64:ppc64el. 325s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 325s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 325s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 325s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 325s Setting up openssl (3.0.13-0ubuntu2) ... 325s Processing triggers for man-db (2.12.0-3) ... 326s Processing triggers for libc-bin (2.39-0ubuntu6) ... 326s Reading package lists... 327s Building dependency tree... 327s Reading state information... 327s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 327s sh: Attempting to set up Debian/Ubuntu apt sources automatically 327s sh: Distribution appears to be Ubuntu 328s Reading package lists... 328s Building dependency tree... 328s Reading state information... 329s eatmydata is already the newest version (131-1). 329s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 329s Reading package lists... 329s Building dependency tree... 329s Reading state information... 329s dbus is already the newest version (1.14.10-4ubuntu1). 329s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 329s Reading package lists... 329s Building dependency tree... 329s Reading state information... 329s rng-tools-debian is already the newest version (2.4). 329s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 329s Reading package lists... 329s Building dependency tree... 329s Reading state information... 330s The following packages will be REMOVED: 330s cloud-init* python3-configobj* python3-debconf* 330s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 330s After this operation, 3256 kB disk space will be freed. 330s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 330s Removing cloud-init (24.1.2-0ubuntu1) ... 330s Removing python3-configobj (5.0.8-3) ... 331s Removing python3-debconf (1.5.86) ... 331s Processing triggers for man-db (2.12.0-3) ... 331s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 331s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 332s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 332s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 332s invoke-rc.d: policy-rc.d denied execution of try-restart. 332s Reading package lists... 332s Building dependency tree... 332s Reading state information... 332s linux-generic is already the newest version (6.8.0-11.11+1). 332s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 332s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 332s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 333s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 335s Reading package lists... 335s Reading package lists... 336s Building dependency tree... 336s Reading state information... 336s Calculating upgrade... 336s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 336s Reading package lists... 336s Building dependency tree... 336s Reading state information... 336s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 336s autopkgtest [15:52:20]: rebooting testbed after setup commands that affected boot 380s autopkgtest [15:53:04]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 384s autopkgtest [15:53:08]: @@@@@@@@@@@@@@@@@@@@ apt-source htsjdk 387s Get:1 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (dsc) [2649 B] 387s Get:2 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (tar) [46.9 MB] 387s Get:3 http://ftpmaster.internal/ubuntu noble/universe htsjdk 4.1.0+dfsg-1 (diff) [39.4 kB] 388s gpgv: Signature made Sun Feb 11 21:45:33 2024 UTC 388s gpgv: using RSA key 33CB284313E90BD27DCB4523600316A6DC277476 388s gpgv: Can't check signature: No public key 388s dpkg-source: warning: cannot verify inline signature for ./htsjdk_4.1.0+dfsg-1.dsc: no acceptable signature found 390s autopkgtest [15:53:14]: testing package htsjdk version 4.1.0+dfsg-1 390s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 390s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 390s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 390s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 390s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 391s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 391s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 391s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 391s autopkgtest [15:53:15]: build not needed 484s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 484s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 484s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 484s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 484s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 484s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 484s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s autopkgtest [15:54:49]: @@@@@@@@@@@@@@@@@@@@ summary 485s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s beagle-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s chromhmm-run-sample-analysis SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s drop-seq-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s fastqc-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s jalview-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s command1 SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s picard-tools-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 485s pilon-run-unit-test SKIP Test lists explicitly supported architectures, but the current architecture ppc64el isn't listed. 516s Creating nova instance adt-noble-ppc64el-htsjdk-20240323-154644-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...