0s autopkgtest [04:22:25]: starting date and time: 2024-03-23 04:22:25+0000 0s autopkgtest [04:22:25]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [04:22:25]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bu6q7l66/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:libseqlib,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade freebayes --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=libseqlib/1.2.0+dfsg-11build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-17.secgroup --name adt-noble-ppc64el-freebayes-20240323-042225-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 346s autopkgtest [04:28:11]: testbed dpkg architecture: ppc64el 346s autopkgtest [04:28:11]: testbed apt version: 2.7.12 346s autopkgtest [04:28:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 347s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 347s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [57.7 kB] 347s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4001 kB] 347s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 347s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [495 kB] 347s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [668 kB] 347s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 347s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 347s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 347s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4259 kB] 348s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 348s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [61.5 kB] 348s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 351s Fetched 9679 kB in 3s (3709 kB/s) 352s Reading package lists... 354s Reading package lists... 354s Building dependency tree... 354s Reading state information... 355s Calculating upgrade... 355s The following packages will be REMOVED: 355s libssl3 355s The following NEW packages will be installed: 355s libssl3t64 355s The following packages have been kept back: 355s curl 355s The following packages will be upgraded: 355s libbsd0 openssl 355s 2 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 355s Need to get 3208 kB of archives. 355s After this operation, 73.7 kB of additional disk space will be used. 355s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 355s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 355s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libbsd0 ppc64el 0.12.1-1 [56.9 kB] 356s Fetched 3208 kB in 1s (4547 kB/s) 356s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 356s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 356s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 356s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 356s wget depends on libssl3 (>= 3.0.0). 356s tnftp depends on libssl3 (>= 3.0.0). 356s tcpdump depends on libssl3 (>= 3.0.0). 356s systemd-resolved depends on libssl3 (>= 3.0.0). 356s systemd depends on libssl3 (>= 3.0.0). 356s sudo depends on libssl3 (>= 3.0.0). 356s rsync depends on libssl3 (>= 3.0.0). 356s python3-cryptography depends on libssl3 (>= 3.0.0). 356s openssh-server depends on libssl3 (>= 3.0.10). 356s openssh-client depends on libssl3 (>= 3.0.10). 356s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 356s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 356s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 356s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 356s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 356s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 356s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 356s libnvme1 depends on libssl3 (>= 3.0.0). 356s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 356s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 356s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 356s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 356s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 356s kmod depends on libssl3 (>= 3.0.0). 356s dhcpcd-base depends on libssl3 (>= 3.0.0). 356s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 356s 356s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 356s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 356s Selecting previously unselected package libssl3t64:ppc64el. 356s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 356s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 356s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 356s Preparing to unpack .../libbsd0_0.12.1-1_ppc64el.deb ... 356s Unpacking libbsd0:ppc64el (0.12.1-1) over (0.11.8-1) ... 356s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 356s Setting up openssl (3.0.13-0ubuntu2) ... 356s Setting up libbsd0:ppc64el (0.12.1-1) ... 356s Processing triggers for man-db (2.12.0-3) ... 357s Processing triggers for libc-bin (2.39-0ubuntu2) ... 357s Reading package lists... 357s Building dependency tree... 357s Reading state information... 358s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 358s sh: Attempting to set up Debian/Ubuntu apt sources automatically 358s sh: Distribution appears to be Ubuntu 359s Reading package lists... 359s Building dependency tree... 359s Reading state information... 359s eatmydata is already the newest version (131-1). 359s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 359s Reading package lists... 360s Building dependency tree... 360s Reading state information... 360s dbus is already the newest version (1.14.10-4ubuntu1). 360s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 360s Reading package lists... 360s Building dependency tree... 360s Reading state information... 360s rng-tools-debian is already the newest version (2.4). 360s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 360s Reading package lists... 360s Building dependency tree... 360s Reading state information... 361s The following packages will be REMOVED: 361s cloud-init* python3-configobj* python3-debconf* 361s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 361s After this operation, 3256 kB disk space will be freed. 361s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 361s Removing cloud-init (24.1.2-0ubuntu1) ... 361s Removing python3-configobj (5.0.8-3) ... 361s Removing python3-debconf (1.5.86) ... 361s Processing triggers for man-db (2.12.0-3) ... 362s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 362s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 363s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 363s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 363s invoke-rc.d: policy-rc.d denied execution of try-restart. 363s Reading package lists... 363s Building dependency tree... 363s Reading state information... 363s linux-generic is already the newest version (6.8.0-11.11+1). 363s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 363s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 363s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 364s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 366s Reading package lists... 366s Reading package lists... 366s Building dependency tree... 366s Reading state information... 367s Calculating upgrade... 367s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 367s Reading package lists... 367s Building dependency tree... 367s Reading state information... 367s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 367s autopkgtest [04:28:32]: rebooting testbed after setup commands that affected boot 555s autopkgtest [04:31:40]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 557s autopkgtest [04:31:42]: @@@@@@@@@@@@@@@@@@@@ apt-source freebayes 560s Get:1 http://ftpmaster.internal/ubuntu noble/universe freebayes 1.3.7-1 (dsc) [2185 B] 560s Get:2 http://ftpmaster.internal/ubuntu noble/universe freebayes 1.3.7-1 (tar) [2902 kB] 560s Get:3 http://ftpmaster.internal/ubuntu noble/universe freebayes 1.3.7-1 (diff) [11.8 kB] 560s gpgv: Signature made Mon Aug 21 12:17:20 2023 UTC 560s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 560s gpgv: Can't check signature: No public key 560s dpkg-source: warning: cannot verify inline signature for ./freebayes_1.3.7-1.dsc: no acceptable signature found 561s autopkgtest [04:31:46]: testing package freebayes version 1.3.7-1 561s autopkgtest [04:31:46]: build not needed 562s autopkgtest [04:31:47]: test run-unit-test: preparing testbed 565s Reading package lists... 565s Building dependency tree... 565s Reading state information... 565s Starting pkgProblemResolver with broken count: 0 565s Starting 2 pkgProblemResolver with broken count: 0 565s Done 566s The following additional packages will be installed: 566s freebayes libdeflate0 libdisorder0 libfastahack0 libfml0 libhts3 566s libhtscodecs2 libjsoncpp25 libseqlib2 libsmithwaterman0 libssw0 libtabixpp0 566s libvcflib2 libwfa2-0 566s Recommended packages: 566s parallel 566s The following NEW packages will be installed: 566s autopkgtest-satdep freebayes libdeflate0 libdisorder0 libfastahack0 libfml0 566s libhts3 libhtscodecs2 libjsoncpp25 libseqlib2 libsmithwaterman0 libssw0 566s libtabixpp0 libvcflib2 libwfa2-0 566s 0 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. 566s Need to get 3057 kB/3057 kB of archives. 566s After this operation, 7890 kB of additional disk space will be used. 566s Get:1 /tmp/autopkgtest.FNoIXJ/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [704 B] 566s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfml0 ppc64el 0.1+git20190320.b499514-1 [79.9 kB] 566s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 566s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 566s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 566s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el libjsoncpp25 ppc64el 1.9.5-6 [86.8 kB] 566s Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el libssw0 ppc64el 1.1-14 [23.9 kB] 566s Get:8 http://ftpmaster.internal/ubuntu noble/universe ppc64el libseqlib2 ppc64el 1.2.0+dfsg-11 [198 kB] 566s Get:9 http://ftpmaster.internal/ubuntu noble/universe ppc64el libtabixpp0 ppc64el 1.1.2-2 [10.0 kB] 566s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el libdisorder0 ppc64el 0.0.2+git20130809.8062ee1-4 [5134 B] 566s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el libfastahack0 ppc64el 1.0.0+dfsg-11 [32.2 kB] 566s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el libsmithwaterman0 ppc64el 0.0+git20160702.2610e25-12 [46.6 kB] 566s Get:13 http://ftpmaster.internal/ubuntu noble/universe ppc64el libwfa2-0 ppc64el 2.3.3-2 [75.7 kB] 566s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el libvcflib2 ppc64el 1.0.9+dfsg1-3 [220 kB] 566s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el freebayes ppc64el 1.3.7-1 [1555 kB] 567s Fetched 3057 kB in 1s (2277 kB/s) 567s Selecting previously unselected package libfml0:ppc64el. 567s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 567s Preparing to unpack .../00-libfml0_0.1+git20190320.b499514-1_ppc64el.deb ... 567s Unpacking libfml0:ppc64el (0.1+git20190320.b499514-1) ... 567s Selecting previously unselected package libdeflate0:ppc64el. 567s Preparing to unpack .../01-libdeflate0_1.19-1_ppc64el.deb ... 567s Unpacking libdeflate0:ppc64el (1.19-1) ... 567s Selecting previously unselected package libhtscodecs2:ppc64el. 567s Preparing to unpack .../02-libhtscodecs2_1.6.0-1_ppc64el.deb ... 567s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 567s Selecting previously unselected package libhts3:ppc64el. 567s Preparing to unpack .../03-libhts3_1.18+ds-1_ppc64el.deb ... 567s Unpacking libhts3:ppc64el (1.18+ds-1) ... 567s Selecting previously unselected package libjsoncpp25:ppc64el. 567s Preparing to unpack .../04-libjsoncpp25_1.9.5-6_ppc64el.deb ... 567s Unpacking libjsoncpp25:ppc64el (1.9.5-6) ... 567s Selecting previously unselected package libssw0:ppc64el. 567s Preparing to unpack .../05-libssw0_1.1-14_ppc64el.deb ... 567s Unpacking libssw0:ppc64el (1.1-14) ... 567s Selecting previously unselected package libseqlib2:ppc64el. 567s Preparing to unpack .../06-libseqlib2_1.2.0+dfsg-11_ppc64el.deb ... 567s Unpacking libseqlib2:ppc64el (1.2.0+dfsg-11) ... 567s Selecting previously unselected package libtabixpp0:ppc64el. 567s Preparing to unpack .../07-libtabixpp0_1.1.2-2_ppc64el.deb ... 567s Unpacking libtabixpp0:ppc64el (1.1.2-2) ... 567s Selecting previously unselected package libdisorder0:ppc64el. 567s Preparing to unpack .../08-libdisorder0_0.0.2+git20130809.8062ee1-4_ppc64el.deb ... 567s Unpacking libdisorder0:ppc64el (0.0.2+git20130809.8062ee1-4) ... 567s Selecting previously unselected package libfastahack0:ppc64el. 567s Preparing to unpack .../09-libfastahack0_1.0.0+dfsg-11_ppc64el.deb ... 567s Unpacking libfastahack0:ppc64el (1.0.0+dfsg-11) ... 567s Selecting previously unselected package libsmithwaterman0:ppc64el. 567s Preparing to unpack .../10-libsmithwaterman0_0.0+git20160702.2610e25-12_ppc64el.deb ... 567s Unpacking libsmithwaterman0:ppc64el (0.0+git20160702.2610e25-12) ... 567s Selecting previously unselected package libwfa2-0:ppc64el. 567s Preparing to unpack .../11-libwfa2-0_2.3.3-2_ppc64el.deb ... 567s Unpacking libwfa2-0:ppc64el (2.3.3-2) ... 567s Selecting previously unselected package libvcflib2:ppc64el. 567s Preparing to unpack .../12-libvcflib2_1.0.9+dfsg1-3_ppc64el.deb ... 567s Unpacking libvcflib2:ppc64el (1.0.9+dfsg1-3) ... 568s Selecting previously unselected package freebayes. 568s Preparing to unpack .../13-freebayes_1.3.7-1_ppc64el.deb ... 568s Unpacking freebayes (1.3.7-1) ... 568s Selecting previously unselected package autopkgtest-satdep. 568s Preparing to unpack .../14-1-autopkgtest-satdep.deb ... 568s Unpacking autopkgtest-satdep (0) ... 568s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 568s Setting up libdisorder0:ppc64el (0.0.2+git20130809.8062ee1-4) ... 568s Setting up libwfa2-0:ppc64el (2.3.3-2) ... 568s Setting up libsmithwaterman0:ppc64el (0.0+git20160702.2610e25-12) ... 568s Setting up libdeflate0:ppc64el (1.19-1) ... 568s Setting up libfml0:ppc64el (0.1+git20190320.b499514-1) ... 568s Setting up libfastahack0:ppc64el (1.0.0+dfsg-11) ... 568s Setting up libjsoncpp25:ppc64el (1.9.5-6) ... 568s Setting up libssw0:ppc64el (1.1-14) ... 568s Setting up libhts3:ppc64el (1.18+ds-1) ... 568s Setting up libtabixpp0:ppc64el (1.1.2-2) ... 568s Setting up libseqlib2:ppc64el (1.2.0+dfsg-11) ... 568s Setting up libvcflib2:ppc64el (1.0.9+dfsg1-3) ... 568s Setting up freebayes (1.3.7-1) ... 568s Setting up autopkgtest-satdep (0) ... 568s Processing triggers for man-db (2.12.0-3) ... 568s Processing triggers for libc-bin (2.39-0ubuntu2) ... 570s (Reading database ... 69873 files and directories currently installed.) 570s Removing autopkgtest-satdep (0) ... 571s autopkgtest [04:31:56]: test run-unit-test: [----------------------- 571s .: 571s README.test_data 571s data 571s freebayes-env.yaml 571s performance 571s pipeline.sh 571s regression 571s runner.sh 571s snakemake-freebayes-parallel.smk 571s splice 571s t 571s targets.bed 571s test.alt 571s test.bam 571s test.bam.bai 571s test.bed 571s test.ref 571s test.ref.fai 571s test.vcf 571s tiny 571s 571s ./data: 571s targets.bed 571s test.alt 571s test.bam 571s test.bam.bai 571s test.bed 571s test.ref 571s test.ref.fai 571s test.vcf 571s 571s ./performance: 571s benchmark.md 571s 571s ./regression: 571s NA12878.chr22.tiny.vcf 571s README.md 571s 571s ./splice: 571s 1:883884-887618.bam 571s 1:883884-887618.bam.bai 571s 1:883884-887618.fa 571s 1:883884-887618.fa.fai 571s 571s ./t: 571s 00_region_and_target_handling.t 571s 01_call_variants.t 571s 01b_call_variants.t 571s 02_multi_bam.t 571s 03_reference_bases.t 571s 571s ./tiny: 571s 1read.bam 571s 1read.bam.bai 571s NA12878.chr22.tiny.bam 571s NA12878.chr22.tiny.bam.bai 571s NA12878.chr22.tiny.cram 571s NA12878.chr22.tiny.giab.vcf 571s NA12878.chr22.tiny.hla.bam 571s NA12878.chr22.tiny.hla.bam.bai 571s hla.fa 571s hla.fa.fai 571s hla.vcf.gz 571s hla.vcf.gz.tbi 571s q with spaces.fa 571s q with spaces.fa.fai 571s q with spaces.regions 571s q.fa 571s q.fa.fai 571s q.regions 571s q.vcf.gz 571s q.vcf.gz.tbi 571s q_spiked.vcf.gz 571s q_spiked.vcf.gz.tbi 571s Test 1 571s Passed 571s 571s Test 2 571s Passed 571s 571s Test 3 571s Passed 571s 571s Test 4 571s Passed 571s 571s Test 5 571s Passed 571s 571s Test 6 571s Passed 571s 571s Test 7 572s Passed 572s 572s Test 8 572s Passed 572s 572s Test 9 572s Passed 572s 572s Test 10 572s Passed 572s 572s Test 11 572s Passed 572s 572s Test 12 573s Passed 573s 573s Test 13 573s Passed 573s 573s Test 14 573s Passed 573s 573s Test 15 573s Passed 573s 573s Test 16 573s Passed 573s 573s Test 17 574s Passed 574s 574s Test 18 574s Passed 574s 574s Test 19 574s Passed 574s 574s Test 20 575s Passed 575s 575s Test 21 575s Passed 575s 575s Test 22 575s Passed 575s 575s Test 23 575s Passed 575s 575s Test 24 576s Passed 576s 576s Test 25 576s Passed 576s 576s Test 26 576s Passed 576s 577s autopkgtest [04:32:02]: test run-unit-test: -----------------------] 577s autopkgtest [04:32:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 577s run-unit-test PASS 577s autopkgtest [04:32:02]: @@@@@@@@@@@@@@@@@@@@ summary 577s run-unit-test PASS 603s Creating nova instance adt-noble-ppc64el-freebayes-20240323-042225-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-ppc64el-server-20240322.img (UUID 8499323f-6fcd-4f77-8a53-77410adea6d3)...