0s autopkgtest [20:15:46]: starting date and time: 2024-03-25 20:15:46+0000 0s autopkgtest [20:15:46]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [20:15:46]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s4vzezol/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:fastqtl,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl,src:r-base --apt-upgrade fastqtl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=fastqtl/2.184+v7+dfsg-4build2 curl/8.5.0-2ubuntu8 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 r-base/4.3.3-2build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-2.secgroup --name adt-noble-ppc64el-fastqtl-20240325-201546-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 112s autopkgtest [20:17:38]: testbed dpkg architecture: ppc64el 112s autopkgtest [20:17:38]: testbed apt version: 2.7.12 112s autopkgtest [20:17:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup 113s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 114s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.0 kB] 114s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [7608 B] 114s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB] 114s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4041 kB] 115s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [700 kB] 115s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 115s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 115s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 115s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4231 kB] 116s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 116s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [61.7 kB] 116s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 119s Fetched 9725 kB in 4s (2624 kB/s) 119s Reading package lists... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 122s Calculating upgrade... 122s The following packages will be REMOVED: 122s libssl3 122s The following NEW packages will be installed: 122s libssl3t64 122s The following packages have been kept back: 122s curl 122s The following packages will be upgraded: 122s openssl 123s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 123s Need to get 3151 kB of archives. 123s After this operation, 73.7 kB of additional disk space will be used. 123s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 123s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 125s Fetched 3151 kB in 2s (1736 kB/s) 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 125s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 125s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 125s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 125s wget depends on libssl3 (>= 3.0.0). 125s tnftp depends on libssl3 (>= 3.0.0). 125s tcpdump depends on libssl3 (>= 3.0.0). 125s systemd-resolved depends on libssl3 (>= 3.0.0). 125s systemd depends on libssl3 (>= 3.0.0). 125s sudo depends on libssl3 (>= 3.0.0). 125s rsync depends on libssl3 (>= 3.0.0). 125s python3-cryptography depends on libssl3 (>= 3.0.0). 125s openssh-server depends on libssl3 (>= 3.0.10). 125s openssh-client depends on libssl3 (>= 3.0.10). 125s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 125s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 125s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 125s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 125s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 125s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 125s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 125s libnvme1 depends on libssl3 (>= 3.0.0). 125s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 125s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 125s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 125s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 125s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 125s kmod depends on libssl3 (>= 3.0.0). 125s dhcpcd-base depends on libssl3 (>= 3.0.0). 125s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 125s 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 125s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 125s Selecting previously unselected package libssl3t64:ppc64el. 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 125s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 125s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 125s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 125s Setting up openssl (3.0.13-0ubuntu2) ... 125s Processing triggers for man-db (2.12.0-3) ... 126s Processing triggers for libc-bin (2.39-0ubuntu6) ... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 127s sh: Attempting to set up Debian/Ubuntu apt sources automatically 127s sh: Distribution appears to be Ubuntu 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s eatmydata is already the newest version (131-1). 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s dbus is already the newest version (1.14.10-4ubuntu1). 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s rng-tools-debian is already the newest version (2.4). 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 130s The following packages will be REMOVED: 130s cloud-init* python3-configobj* python3-debconf* 130s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 130s After this operation, 3256 kB disk space will be freed. 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 130s Removing cloud-init (24.1.2-0ubuntu1) ... 131s Removing python3-configobj (5.0.8-3) ... 131s Removing python3-debconf (1.5.86) ... 131s Processing triggers for man-db (2.12.0-3) ... 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 132s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 132s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 132s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 132s invoke-rc.d: policy-rc.d denied execution of try-restart. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s linux-generic is already the newest version (6.8.0-11.11+1). 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 133s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 133s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 136s Reading package lists... 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Calculating upgrade... 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s autopkgtest [20:18:03]: rebooting testbed after setup commands that affected boot 297s autopkgtest [20:20:43]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 299s autopkgtest [20:20:45]: @@@@@@@@@@@@@@@@@@@@ apt-source fastqtl 305s Get:1 http://ftpmaster.internal/ubuntu noble/universe fastqtl 2.184+v7+dfsg-4build1 (dsc) [2280 B] 305s Get:2 http://ftpmaster.internal/ubuntu noble/universe fastqtl 2.184+v7+dfsg-4build1 (tar) [17.1 MB] 305s Get:3 http://ftpmaster.internal/ubuntu noble/universe fastqtl 2.184+v7+dfsg-4build1 (diff) [21.0 kB] 305s gpgv: Signature made Tue Dec 19 15:01:14 2023 UTC 305s gpgv: using RSA key 568BF22A66337CBFC9A6B9B72C83DBC8E9BD0E37 305s gpgv: Can't check signature: No public key 305s dpkg-source: warning: cannot verify inline signature for ./fastqtl_2.184+v7+dfsg-4build1.dsc: no acceptable signature found 305s autopkgtest [20:20:51]: testing package fastqtl version 2.184+v7+dfsg-4build1 306s autopkgtest [20:20:52]: build not needed 307s autopkgtest [20:20:53]: test run-sample-analysis: preparing testbed 308s Reading package lists... 309s Building dependency tree... 309s Reading state information... 309s Starting pkgProblemResolver with broken count: 0 309s Starting 2 pkgProblemResolver with broken count: 0 309s Done 309s The following additional packages will be installed: 309s fastqtl fastqtl-doc libblas3 libboost-iostreams1.83.0 309s libboost-program-options1.83.0 libdeflate0 libgsl27 libgslcblas0 libhts3 309s libhtscodecs2 r-mathlib 309s Suggested packages: 309s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html 309s Recommended packages: 309s r-cran-qvalue r-cran-tools r-cran-argparser r-base-core r-base-dev 309s The following NEW packages will be installed: 309s autopkgtest-satdep fastqtl fastqtl-doc libblas3 libboost-iostreams1.83.0 309s libboost-program-options1.83.0 libdeflate0 libgsl27 libgslcblas0 libhts3 309s libhtscodecs2 r-mathlib 309s 0 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. 309s Need to get 22.6 MB/22.6 MB of archives. 309s After this operation, 32.9 MB of additional disk space will be used. 309s Get:1 /tmp/autopkgtest.GKyKSn/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [712 B] 309s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 310s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-iostreams1.83.0 ppc64el 1.83.0-2ubuntu1 [340 kB] 310s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libboost-program-options1.83.0 ppc64el 1.83.0-2ubuntu1 [421 kB] 311s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgslcblas0 ppc64el 2.7.1+dfsg-6ubuntu1 [85.3 kB] 311s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el libgsl27 ppc64el 2.7.1+dfsg-6ubuntu1 [1064 kB] 311s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 311s Get:8 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 311s Get:9 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 312s Get:10 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-mathlib ppc64el 4.3.2-1build1 [2425 kB] 313s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el fastqtl ppc64el 2.184+v7+dfsg-4build1 [241 kB] 313s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el fastqtl-doc all 2.184+v7+dfsg-4build1 [17.0 MB] 315s Fetched 22.6 MB in 5s (4315 kB/s) 315s Selecting previously unselected package libblas3:ppc64el. 315s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 315s Preparing to unpack .../00-libblas3_3.12.0-3_ppc64el.deb ... 315s Unpacking libblas3:ppc64el (3.12.0-3) ... 315s Selecting previously unselected package libboost-iostreams1.83.0:ppc64el. 315s Preparing to unpack .../01-libboost-iostreams1.83.0_1.83.0-2ubuntu1_ppc64el.deb ... 315s Unpacking libboost-iostreams1.83.0:ppc64el (1.83.0-2ubuntu1) ... 315s Selecting previously unselected package libboost-program-options1.83.0:ppc64el. 315s Preparing to unpack .../02-libboost-program-options1.83.0_1.83.0-2ubuntu1_ppc64el.deb ... 315s Unpacking libboost-program-options1.83.0:ppc64el (1.83.0-2ubuntu1) ... 315s Selecting previously unselected package libgslcblas0:ppc64el. 315s Preparing to unpack .../03-libgslcblas0_2.7.1+dfsg-6ubuntu1_ppc64el.deb ... 315s Unpacking libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu1) ... 315s Selecting previously unselected package libgsl27:ppc64el. 315s Preparing to unpack .../04-libgsl27_2.7.1+dfsg-6ubuntu1_ppc64el.deb ... 315s Unpacking libgsl27:ppc64el (2.7.1+dfsg-6ubuntu1) ... 315s Selecting previously unselected package libdeflate0:ppc64el. 315s Preparing to unpack .../05-libdeflate0_1.19-1_ppc64el.deb ... 315s Unpacking libdeflate0:ppc64el (1.19-1) ... 315s Selecting previously unselected package libhtscodecs2:ppc64el. 315s Preparing to unpack .../06-libhtscodecs2_1.6.0-1_ppc64el.deb ... 315s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 315s Selecting previously unselected package libhts3:ppc64el. 315s Preparing to unpack .../07-libhts3_1.18+ds-1_ppc64el.deb ... 315s Unpacking libhts3:ppc64el (1.18+ds-1) ... 315s Selecting previously unselected package r-mathlib. 315s Preparing to unpack .../08-r-mathlib_4.3.2-1build1_ppc64el.deb ... 315s Unpacking r-mathlib (4.3.2-1build1) ... 315s Selecting previously unselected package fastqtl. 315s Preparing to unpack .../09-fastqtl_2.184+v7+dfsg-4build1_ppc64el.deb ... 315s Unpacking fastqtl (2.184+v7+dfsg-4build1) ... 315s Selecting previously unselected package fastqtl-doc. 315s Preparing to unpack .../10-fastqtl-doc_2.184+v7+dfsg-4build1_all.deb ... 315s Unpacking fastqtl-doc (2.184+v7+dfsg-4build1) ... 315s Selecting previously unselected package autopkgtest-satdep. 315s Preparing to unpack .../11-1-autopkgtest-satdep.deb ... 315s Unpacking autopkgtest-satdep (0) ... 315s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 315s Setting up libboost-program-options1.83.0:ppc64el (1.83.0-2ubuntu1) ... 315s Setting up fastqtl-doc (2.184+v7+dfsg-4build1) ... 315s Setting up libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu1) ... 315s Setting up libdeflate0:ppc64el (1.19-1) ... 315s Setting up libgsl27:ppc64el (2.7.1+dfsg-6ubuntu1) ... 315s Setting up libblas3:ppc64el (3.12.0-3) ... 315s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 315s Setting up libboost-iostreams1.83.0:ppc64el (1.83.0-2ubuntu1) ... 315s Setting up r-mathlib (4.3.2-1build1) ... 315s Setting up libhts3:ppc64el (1.18+ds-1) ... 315s Setting up fastqtl (2.184+v7+dfsg-4build1) ... 315s Setting up autopkgtest-satdep (0) ... 315s Processing triggers for man-db (2.12.0-3) ... 316s Processing triggers for libc-bin (2.39-0ubuntu6) ... 318s (Reading database ... 69846 files and directories currently installed.) 318s Removing autopkgtest-satdep (0) ... 319s autopkgtest [20:21:05]: test run-sample-analysis: [----------------------- 319s covariates.txt.gz 319s genotypes.vcf.gz 319s genotypes.vcf.gz.tbi 319s interaction.txt 319s phenotypes.bed.gz 319s phenotypes.bed.gz.tbi 319s 319s Fast QTL 319s * Authors : Olivier DELANEAU, Halit ONGEN, Alfonso BUIL & Manolis DERMITZAKIS 319s * Contact : olivier.delaneau@gmail.com 319s * Webpage : http://fastqtl.sourceforge.net/ 319s * Version : v2.184_gtex 319s 319s Perform permutation based interaction analysis (used to calculate corrected p-values for MPs) 319s * Perform 100 permutations 319s * Test interaction with term from [interaction.txt] 319s * Random number generator is seeded with 1 319s * Considering variants within 1e+06 bp of the MPs 319s * Using minor allele frequency threshold = 0.0000 319s * Using minor allele sample threshold = 0 319s * Using INFO field AF threshold = 0.0000 319s * Chunk processed 1 / 100 319s 319s Scanning phenotype data in [phenotypes.bed.gz] 319s * 364 phenotypes 319s 319s Reading phenotype data in [phenotypes.bed.gz] 319s * region = 22:17517460-17646177 319s * 373 samples included 319s * 4 phenotypes included 319s 319s Reading genotype data in [genotypes.vcf.gz] in VCF format 319s * region = 22:16517460-18646177 321s * 373 samples included 321s * 8580 sites included 321s 321s Reading covariates in [covariates.txt.gz] 321s * 373 samples included 321s * 4 covariate(s) included 321s 321s Reading interaction term in [interaction.txt] 321s * 373 samples included 321s 321s Imputing missing genotypes 321s 321s Imputing missing phenotypes 321s 321s Initialize covariate 321s 321s Processing gene [ENSG00000237438.1] 321s * Number of variants in cis = 7966 344s * Beta distribution parameters = 1.0382 2287.7101 344s * Progress = 25.0% 344s 344s Processing gene [ENSG00000177663.8] 344s * Number of variants in cis = 8165 369s * Beta distribution parameters = 0.7994 2826.0721 369s * Progress = 50.0% 369s 369s Processing gene [ENSG00000183307.3] 369s * Number of variants in cis = 8279 395s * Beta distribution parameters = 0.9595 9906.5566 395s * Progress = 75.0% 395s 395s Processing gene [ENSG00000069998.8] 395s * Number of variants in cis = 8466 422s * Beta distribution parameters = 0.9606 4564.2130 422s * Progress = 100.0% 422s 422s Running time: 103 seconds 422s autopkgtest [20:22:48]: test run-sample-analysis: -----------------------] 423s run-sample-analysis PASS 423s autopkgtest [20:22:49]: test run-sample-analysis: - - - - - - - - - - results - - - - - - - - - - 423s autopkgtest [20:22:49]: @@@@@@@@@@@@@@@@@@@@ summary 423s run-sample-analysis PASS 437s Creating nova instance adt-noble-ppc64el-fastqtl-20240325-201546-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240325.img (UUID ce50e202-ac12-4562-879d-419903f0141e)...