0s autopkgtest [23:45:57]: starting date and time: 2024-04-18 23:45:57+0000
  0s autopkgtest [23:45:57]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline
  0s autopkgtest [23:45:57]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.u4geg0k_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gsl --apt-upgrade fastani --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gsl/2.7.1+dfsg-6ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-5.secgroup --name adt-noble-ppc64el-fastani-20240418-234557-juju-7f2275-prod-proposed-migration-environment-3-72d234c7-d790-429d-9fd2-a3a03eeb63c9 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
103s autopkgtest [23:47:40]: testbed dpkg architecture: ppc64el
103s autopkgtest [23:47:40]: testbed apt version: 2.7.14build2
103s autopkgtest [23:47:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup
104s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
104s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B]
104s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [57.5 kB]
104s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.2 kB]
104s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [381 kB]
105s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [112 kB]
105s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
105s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [976 B]
105s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
105s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [587 kB]
105s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
105s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [1004 B]
105s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
107s Fetched 1282 kB in 1s (1153 kB/s)
107s Reading package lists...
109s sh: 4: dhclient: not found
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
110s Calculating upgrade...
110s The following packages will be upgraded:
110s   libkeyutils1 libnuma1 make netcat-openbsd numactl
110s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
110s Need to get 343 kB of archives.
110s After this operation, 16.4 kB disk space will be freed.
110s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libkeyutils1 ppc64el 1.6.3-3build1 [11.0 kB]
111s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el netcat-openbsd ppc64el 1.226-1ubuntu2 [46.2 kB]
111s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libnuma1 ppc64el 2.0.18-1build1 [28.2 kB]
111s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el make ppc64el 4.3-4.1build2 [214 kB]
111s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el numactl ppc64el 2.0.18-1build1 [43.9 kB]
111s Fetched 343 kB in 1s (654 kB/s)
111s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71981 files and directories currently installed.)
111s Preparing to unpack .../libkeyutils1_1.6.3-3build1_ppc64el.deb ...
111s Unpacking libkeyutils1:ppc64el (1.6.3-3build1) over (1.6.3-3) ...
111s Preparing to unpack .../netcat-openbsd_1.226-1ubuntu2_ppc64el.deb ...
111s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ...
111s Preparing to unpack .../libnuma1_2.0.18-1build1_ppc64el.deb ...
111s Unpacking libnuma1:ppc64el (2.0.18-1build1) over (2.0.18-1) ...
111s Preparing to unpack .../make_4.3-4.1build2_ppc64el.deb ...
111s Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ...
111s Preparing to unpack .../numactl_2.0.18-1build1_ppc64el.deb ...
111s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ...
111s Setting up libkeyutils1:ppc64el (1.6.3-3build1) ...
111s Setting up netcat-openbsd (1.226-1ubuntu2) ...
111s Setting up make (4.3-4.1build2) ...
111s Setting up libnuma1:ppc64el (2.0.18-1build1) ...
111s Setting up numactl (2.0.18-1build1) ...
111s Processing triggers for man-db (2.12.0-4build1) ...
112s Processing triggers for libc-bin (2.39-0ubuntu8) ...
112s Reading package lists...
112s Building dependency tree...
112s Reading state information...
113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
113s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
113s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
113s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
113s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
114s Reading package lists...
114s Reading package lists...
115s Building dependency tree...
115s Reading state information...
115s Calculating upgrade...
115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
115s Reading package lists...
115s Building dependency tree...
115s Reading state information...
115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
118s autopkgtest [23:47:55]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr  4 22:47:57 UTC 2024
118s autopkgtest [23:47:55]: @@@@@@@@@@@@@@@@@@@@ apt-source fastani
121s Get:1 http://ftpmaster.internal/ubuntu noble/universe fastani 1.33-3 (dsc) [1376 B]
121s Get:2 http://ftpmaster.internal/ubuntu noble/universe fastani 1.33-3 (tar) [2979 kB]
121s Get:3 http://ftpmaster.internal/ubuntu noble/universe fastani 1.33-3 (diff) [6712 B]
121s gpgv: Signature made Tue Sep 12 16:57:28 2023 UTC
121s gpgv:                using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA
121s gpgv: Can't check signature: No public key
121s dpkg-source: warning: cannot verify inline signature for ./fastani_1.33-3.dsc: no acceptable signature found
121s autopkgtest [23:47:58]: testing package fastani version 1.33-3
121s autopkgtest [23:47:58]: build not needed
122s autopkgtest [23:47:59]: test run-unit-test: preparing testbed
124s Reading package lists...
124s Building dependency tree...
124s Reading state information...
124s Starting pkgProblemResolver with broken count: 0
124s Starting 2 pkgProblemResolver with broken count: 0
124s Done
124s The following additional packages will be installed:
124s   fastani fontconfig libblas3 libcairo2 libdatrie1 libgfortran5 libgomp1
124s   libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libice6 liblapack3
124s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
124s   libpaper1 libpixman-1-0 libsm6 libtcl8.6 libthai-data libthai0 libtk8.6
124s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler
124s   r-base-core r-cran-ade4 r-cran-genoplotr r-cran-lattice r-cran-littler
124s   r-cran-mass r-cran-pixmap r-cran-pkgkitten r-cran-rcpp r-cran-rcpparmadillo
124s   r-cran-sp unzip x11-common xdg-utils zip
124s Suggested packages:
124s   gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html tcl8.6 tk8.6
124s   elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html r-cran-adegraphics
124s   r-cran-adephylo r-cran-ape r-cran-deldir r-cran-spdep r-cran-waveslim
124s   r-cran-progress r-cran-foreach r-cran-doparallel r-cran-iterators
124s   r-cran-getopt r-cran-inline
124s Recommended packages:
124s   r-recommended r-base-dev r-doc-html r-cran-rcolorbrewer r-cran-gstat
124s   r-cran-deldir r-cran-knitr r-cran-rmarkdown r-cran-sf r-cran-terra
124s   r-cran-raster libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
124s   x11-utils x11-xserver-utils
124s The following NEW packages will be installed:
124s   autopkgtest-satdep fastani fontconfig libblas3 libcairo2 libdatrie1
124s   libgfortran5 libgomp1 libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b
124s   libice6 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
124s   libpaper-utils libpaper1 libpixman-1-0 libsm6 libtcl8.6 libthai-data
124s   libthai0 libtk8.6 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1
124s   libxt6t64 littler r-base-core r-cran-ade4 r-cran-genoplotr r-cran-lattice
124s   r-cran-littler r-cran-mass r-cran-pixmap r-cran-pkgkitten r-cran-rcpp
124s   r-cran-rcpparmadillo r-cran-sp unzip x11-common xdg-utils zip
124s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded.
124s Need to get 51.4 MB/51.4 MB of archives.
124s After this operation, 112 MB of additional disk space will be used.
124s Get:1 /tmp/autopkgtest.VTMHTL/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B]
124s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libgomp1 ppc64el 14-20240412-0ubuntu1 [161 kB]
125s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgslcblas0 ppc64el 2.7.1+dfsg-6ubuntu2 [86.6 kB]
125s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgsl27 ppc64el 2.7.1+dfsg-6ubuntu2 [1090 kB]
125s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el fastani ppc64el 1.33-3 [118 kB]
125s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig ppc64el 2.15.0-1.1ubuntu2 [192 kB]
125s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB]
125s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libpixman-1-0 ppc64el 0.42.2-1build1 [336 kB]
125s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-render0 ppc64el 1.15-1 [17.2 kB]
125s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el libxcb-shm0 ppc64el 1.15-1 [5896 B]
125s Get:11 http://ftpmaster.internal/ubuntu noble/main ppc64el libxrender1 ppc64el 1:0.9.10-1.1build1 [23.1 kB]
125s Get:12 http://ftpmaster.internal/ubuntu noble/main ppc64el libcairo2 ppc64el 1.18.0-3build1 [751 kB]
125s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el libdatrie1 ppc64el 0.2.13-3build1 [22.7 kB]
125s Get:14 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240412-0ubuntu1 [574 kB]
125s Get:15 http://ftpmaster.internal/ubuntu noble/main ppc64el libgraphite2-3 ppc64el 1.3.14-2build1 [84.6 kB]
125s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el libharfbuzz0b ppc64el 8.3.0-2build2 [580 kB]
125s Get:17 http://ftpmaster.internal/ubuntu noble/main ppc64el x11-common all 1:7.7+23ubuntu3 [21.7 kB]
125s Get:18 http://ftpmaster.internal/ubuntu noble/main ppc64el libice6 ppc64el 2:1.0.10-1build3 [49.1 kB]
125s Get:19 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB]
126s Get:20 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai-data all 0.1.29-2build1 [158 kB]
126s Get:21 http://ftpmaster.internal/ubuntu noble/main ppc64el libthai0 ppc64el 0.1.29-2build1 [21.8 kB]
126s Get:22 http://ftpmaster.internal/ubuntu noble/main ppc64el libpango-1.0-0 ppc64el 1.52.1+ds-1build1 [271 kB]
126s Get:23 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangoft2-1.0-0 ppc64el 1.52.1+ds-1build1 [50.5 kB]
126s Get:24 http://ftpmaster.internal/ubuntu noble/main ppc64el libpangocairo-1.0-0 ppc64el 1.52.1+ds-1build1 [31.1 kB]
126s Get:25 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper1 ppc64el 1.1.29build1 [13.7 kB]
126s Get:26 http://ftpmaster.internal/ubuntu noble/main ppc64el libpaper-utils ppc64el 1.1.29build1 [8742 B]
126s Get:27 http://ftpmaster.internal/ubuntu noble/main ppc64el libsm6 ppc64el 2:1.2.3-1build3 [17.6 kB]
126s Get:28 http://ftpmaster.internal/ubuntu noble/main ppc64el libtcl8.6 ppc64el 8.6.14+dfsg-1build1 [1204 kB]
126s Get:29 http://ftpmaster.internal/ubuntu noble/main ppc64el libxft2 ppc64el 2.3.6-1build1 [61.5 kB]
126s Get:30 http://ftpmaster.internal/ubuntu noble/main ppc64el libxss1 ppc64el 1:1.2.3-1build3 [7980 B]
126s Get:31 http://ftpmaster.internal/ubuntu noble/main ppc64el libtk8.6 ppc64el 8.6.14-1build1 [944 kB]
126s Get:32 http://ftpmaster.internal/ubuntu noble/main ppc64el libxt6t64 ppc64el 1:1.2.1-1.2build1 [202 kB]
126s Get:33 http://ftpmaster.internal/ubuntu noble/main ppc64el zip ppc64el 3.0-13build1 [198 kB]
126s Get:34 http://ftpmaster.internal/ubuntu noble/main ppc64el unzip ppc64el 6.0-28ubuntu4 [192 kB]
126s Get:35 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
126s Get:36 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-base-core ppc64el 4.3.3-2build2 [27.4 MB]
128s Get:37 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-littler ppc64el 0.3.19-1 [95.1 kB]
128s Get:38 http://ftpmaster.internal/ubuntu noble/universe ppc64el littler all 0.3.19-1 [2472 B]
128s Get:39 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-mass ppc64el 7.3-60.0.1-1 [1126 kB]
128s Get:40 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pixmap all 0.4-12-1 [201 kB]
128s Get:41 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-lattice ppc64el 0.22-5-1 [1343 kB]
128s Get:42 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-sp ppc64el 1:2.1-2+dfsg-1 [1451 kB]
128s Get:43 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
128s Get:44 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rcpp ppc64el 1.0.12-1 [1989 kB]
128s Get:45 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-rcpparmadillo ppc64el 0.12.8.1.0-1build1 [875 kB]
128s Get:46 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-ade4 ppc64el 1.7-22-1 [5351 kB]
128s Get:47 http://ftpmaster.internal/ubuntu noble/universe ppc64el r-cran-genoplotr all 0.8.11+dfsg-2 [875 kB]
129s Preconfiguring packages ...
129s Fetched 51.4 MB in 4s (12.5 MB/s)
129s Selecting previously unselected package libgomp1:ppc64el.
129s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71981 files and directories currently installed.)
129s Preparing to unpack .../00-libgomp1_14-20240412-0ubuntu1_ppc64el.deb ...
129s Unpacking libgomp1:ppc64el (14-20240412-0ubuntu1) ...
129s Selecting previously unselected package libgslcblas0:ppc64el.
129s Preparing to unpack .../01-libgslcblas0_2.7.1+dfsg-6ubuntu2_ppc64el.deb ...
129s Unpacking libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ...
129s Selecting previously unselected package libgsl27:ppc64el.
129s Preparing to unpack .../02-libgsl27_2.7.1+dfsg-6ubuntu2_ppc64el.deb ...
129s Unpacking libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ...
129s Selecting previously unselected package fastani.
129s Preparing to unpack .../03-fastani_1.33-3_ppc64el.deb ...
129s Unpacking fastani (1.33-3) ...
129s Selecting previously unselected package fontconfig.
129s Preparing to unpack .../04-fontconfig_2.15.0-1.1ubuntu2_ppc64el.deb ...
129s Unpacking fontconfig (2.15.0-1.1ubuntu2) ...
129s Selecting previously unselected package libblas3:ppc64el.
129s Preparing to unpack .../05-libblas3_3.12.0-3build1_ppc64el.deb ...
129s Unpacking libblas3:ppc64el (3.12.0-3build1) ...
129s Selecting previously unselected package libpixman-1-0:ppc64el.
129s Preparing to unpack .../06-libpixman-1-0_0.42.2-1build1_ppc64el.deb ...
129s Unpacking libpixman-1-0:ppc64el (0.42.2-1build1) ...
129s Selecting previously unselected package libxcb-render0:ppc64el.
129s Preparing to unpack .../07-libxcb-render0_1.15-1_ppc64el.deb ...
129s Unpacking libxcb-render0:ppc64el (1.15-1) ...
129s Selecting previously unselected package libxcb-shm0:ppc64el.
129s Preparing to unpack .../08-libxcb-shm0_1.15-1_ppc64el.deb ...
129s Unpacking libxcb-shm0:ppc64el (1.15-1) ...
129s Selecting previously unselected package libxrender1:ppc64el.
129s Preparing to unpack .../09-libxrender1_1%3a0.9.10-1.1build1_ppc64el.deb ...
129s Unpacking libxrender1:ppc64el (1:0.9.10-1.1build1) ...
129s Selecting previously unselected package libcairo2:ppc64el.
129s Preparing to unpack .../10-libcairo2_1.18.0-3build1_ppc64el.deb ...
129s Unpacking libcairo2:ppc64el (1.18.0-3build1) ...
129s Selecting previously unselected package libdatrie1:ppc64el.
129s Preparing to unpack .../11-libdatrie1_0.2.13-3build1_ppc64el.deb ...
129s Unpacking libdatrie1:ppc64el (0.2.13-3build1) ...
129s Selecting previously unselected package libgfortran5:ppc64el.
129s Preparing to unpack .../12-libgfortran5_14-20240412-0ubuntu1_ppc64el.deb ...
129s Unpacking libgfortran5:ppc64el (14-20240412-0ubuntu1) ...
129s Selecting previously unselected package libgraphite2-3:ppc64el.
129s Preparing to unpack .../13-libgraphite2-3_1.3.14-2build1_ppc64el.deb ...
129s Unpacking libgraphite2-3:ppc64el (1.3.14-2build1) ...
129s Selecting previously unselected package libharfbuzz0b:ppc64el.
129s Preparing to unpack .../14-libharfbuzz0b_8.3.0-2build2_ppc64el.deb ...
129s Unpacking libharfbuzz0b:ppc64el (8.3.0-2build2) ...
129s Selecting previously unselected package x11-common.
129s Preparing to unpack .../15-x11-common_1%3a7.7+23ubuntu3_all.deb ...
129s Unpacking x11-common (1:7.7+23ubuntu3) ...
129s Selecting previously unselected package libice6:ppc64el.
129s Preparing to unpack .../16-libice6_2%3a1.0.10-1build3_ppc64el.deb ...
129s Unpacking libice6:ppc64el (2:1.0.10-1build3) ...
129s Selecting previously unselected package liblapack3:ppc64el.
129s Preparing to unpack .../17-liblapack3_3.12.0-3build1_ppc64el.deb ...
129s Unpacking liblapack3:ppc64el (3.12.0-3build1) ...
129s Selecting previously unselected package libthai-data.
129s Preparing to unpack .../18-libthai-data_0.1.29-2build1_all.deb ...
129s Unpacking libthai-data (0.1.29-2build1) ...
129s Selecting previously unselected package libthai0:ppc64el.
129s Preparing to unpack .../19-libthai0_0.1.29-2build1_ppc64el.deb ...
129s Unpacking libthai0:ppc64el (0.1.29-2build1) ...
129s Selecting previously unselected package libpango-1.0-0:ppc64el.
129s Preparing to unpack .../20-libpango-1.0-0_1.52.1+ds-1build1_ppc64el.deb ...
129s Unpacking libpango-1.0-0:ppc64el (1.52.1+ds-1build1) ...
129s Selecting previously unselected package libpangoft2-1.0-0:ppc64el.
129s Preparing to unpack .../21-libpangoft2-1.0-0_1.52.1+ds-1build1_ppc64el.deb ...
129s Unpacking libpangoft2-1.0-0:ppc64el (1.52.1+ds-1build1) ...
129s Selecting previously unselected package libpangocairo-1.0-0:ppc64el.
129s Preparing to unpack .../22-libpangocairo-1.0-0_1.52.1+ds-1build1_ppc64el.deb ...
129s Unpacking libpangocairo-1.0-0:ppc64el (1.52.1+ds-1build1) ...
129s Selecting previously unselected package libpaper1:ppc64el.
129s Preparing to unpack .../23-libpaper1_1.1.29build1_ppc64el.deb ...
129s Unpacking libpaper1:ppc64el (1.1.29build1) ...
129s Selecting previously unselected package libpaper-utils.
129s Preparing to unpack .../24-libpaper-utils_1.1.29build1_ppc64el.deb ...
129s Unpacking libpaper-utils (1.1.29build1) ...
129s Selecting previously unselected package libsm6:ppc64el.
129s Preparing to unpack .../25-libsm6_2%3a1.2.3-1build3_ppc64el.deb ...
129s Unpacking libsm6:ppc64el (2:1.2.3-1build3) ...
129s Selecting previously unselected package libtcl8.6:ppc64el.
129s Preparing to unpack .../26-libtcl8.6_8.6.14+dfsg-1build1_ppc64el.deb ...
129s Unpacking libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ...
129s Selecting previously unselected package libxft2:ppc64el.
129s Preparing to unpack .../27-libxft2_2.3.6-1build1_ppc64el.deb ...
129s Unpacking libxft2:ppc64el (2.3.6-1build1) ...
129s Selecting previously unselected package libxss1:ppc64el.
129s Preparing to unpack .../28-libxss1_1%3a1.2.3-1build3_ppc64el.deb ...
129s Unpacking libxss1:ppc64el (1:1.2.3-1build3) ...
129s Selecting previously unselected package libtk8.6:ppc64el.
129s Preparing to unpack .../29-libtk8.6_8.6.14-1build1_ppc64el.deb ...
129s Unpacking libtk8.6:ppc64el (8.6.14-1build1) ...
129s Selecting previously unselected package libxt6t64:ppc64el.
129s Preparing to unpack .../30-libxt6t64_1%3a1.2.1-1.2build1_ppc64el.deb ...
129s Unpacking libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
129s Selecting previously unselected package zip.
129s Preparing to unpack .../31-zip_3.0-13build1_ppc64el.deb ...
129s Unpacking zip (3.0-13build1) ...
129s Selecting previously unselected package unzip.
129s Preparing to unpack .../32-unzip_6.0-28ubuntu4_ppc64el.deb ...
129s Unpacking unzip (6.0-28ubuntu4) ...
129s Selecting previously unselected package xdg-utils.
129s Preparing to unpack .../33-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
129s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
130s Selecting previously unselected package r-base-core.
130s Preparing to unpack .../34-r-base-core_4.3.3-2build2_ppc64el.deb ...
130s Unpacking r-base-core (4.3.3-2build2) ...
130s Selecting previously unselected package r-cran-littler.
130s Preparing to unpack .../35-r-cran-littler_0.3.19-1_ppc64el.deb ...
130s Unpacking r-cran-littler (0.3.19-1) ...
130s Selecting previously unselected package littler.
130s Preparing to unpack .../36-littler_0.3.19-1_all.deb ...
130s Unpacking littler (0.3.19-1) ...
130s Selecting previously unselected package r-cran-mass.
130s Preparing to unpack .../37-r-cran-mass_7.3-60.0.1-1_ppc64el.deb ...
130s Unpacking r-cran-mass (7.3-60.0.1-1) ...
130s Selecting previously unselected package r-cran-pixmap.
130s Preparing to unpack .../38-r-cran-pixmap_0.4-12-1_all.deb ...
130s Unpacking r-cran-pixmap (0.4-12-1) ...
130s Selecting previously unselected package r-cran-lattice.
130s Preparing to unpack .../39-r-cran-lattice_0.22-5-1_ppc64el.deb ...
130s Unpacking r-cran-lattice (0.22-5-1) ...
130s Selecting previously unselected package r-cran-sp.
130s Preparing to unpack .../40-r-cran-sp_1%3a2.1-2+dfsg-1_ppc64el.deb ...
130s Unpacking r-cran-sp (1:2.1-2+dfsg-1) ...
130s Selecting previously unselected package r-cran-pkgkitten.
130s Preparing to unpack .../41-r-cran-pkgkitten_0.2.3-1_all.deb ...
130s Unpacking r-cran-pkgkitten (0.2.3-1) ...
130s Selecting previously unselected package r-cran-rcpp.
130s Preparing to unpack .../42-r-cran-rcpp_1.0.12-1_ppc64el.deb ...
130s Unpacking r-cran-rcpp (1.0.12-1) ...
130s Selecting previously unselected package r-cran-rcpparmadillo.
130s Preparing to unpack .../43-r-cran-rcpparmadillo_0.12.8.1.0-1build1_ppc64el.deb ...
130s Unpacking r-cran-rcpparmadillo (0.12.8.1.0-1build1) ...
130s Selecting previously unselected package r-cran-ade4.
130s Preparing to unpack .../44-r-cran-ade4_1.7-22-1_ppc64el.deb ...
130s Unpacking r-cran-ade4 (1.7-22-1) ...
131s Selecting previously unselected package r-cran-genoplotr.
131s Preparing to unpack .../45-r-cran-genoplotr_0.8.11+dfsg-2_all.deb ...
131s Unpacking r-cran-genoplotr (0.8.11+dfsg-2) ...
131s Selecting previously unselected package autopkgtest-satdep.
131s Preparing to unpack .../46-1-autopkgtest-satdep.deb ...
131s Unpacking autopkgtest-satdep (0) ...
131s Setting up libgraphite2-3:ppc64el (1.3.14-2build1) ...
131s Setting up libpixman-1-0:ppc64el (0.42.2-1build1) ...
131s Setting up libpaper1:ppc64el (1.1.29build1) ...
131s 
131s Creating config file /etc/papersize with new version
131s Setting up fontconfig (2.15.0-1.1ubuntu2) ...
133s Regenerating fonts cache... done.
133s Setting up libxrender1:ppc64el (1:0.9.10-1.1build1) ...
133s Setting up libdatrie1:ppc64el (0.2.13-3build1) ...
133s Setting up libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ...
133s Setting up libxcb-render0:ppc64el (1.15-1) ...
133s Setting up unzip (6.0-28ubuntu4) ...
133s Setting up x11-common (1:7.7+23ubuntu3) ...
133s Setting up libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ...
133s Setting up libxcb-shm0:ppc64el (1.15-1) ...
133s Setting up libpaper-utils (1.1.29build1) ...
133s Setting up libgomp1:ppc64el (14-20240412-0ubuntu1) ...
133s Setting up libcairo2:ppc64el (1.18.0-3build1) ...
133s Setting up zip (3.0-13build1) ...
133s Setting up libblas3:ppc64el (3.12.0-3build1) ...
133s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode
133s Setting up fastani (1.33-3) ...
133s Setting up libtcl8.6:ppc64el (8.6.14+dfsg-1build1) ...
133s Setting up libgfortran5:ppc64el (14-20240412-0ubuntu1) ...
133s Setting up libharfbuzz0b:ppc64el (8.3.0-2build2) ...
133s Setting up libthai-data (0.1.29-2build1) ...
133s Setting up libxss1:ppc64el (1:1.2.3-1build3) ...
133s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
133s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
133s Setting up libice6:ppc64el (2:1.0.10-1build3) ...
133s Setting up liblapack3:ppc64el (3.12.0-3build1) ...
133s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode
133s Setting up libxft2:ppc64el (2.3.6-1build1) ...
133s Setting up libtk8.6:ppc64el (8.6.14-1build1) ...
133s Setting up libthai0:ppc64el (0.1.29-2build1) ...
133s Setting up libsm6:ppc64el (2:1.2.3-1build3) ...
133s Setting up libpango-1.0-0:ppc64el (1.52.1+ds-1build1) ...
133s Setting up libxt6t64:ppc64el (1:1.2.1-1.2build1) ...
133s Setting up libpangoft2-1.0-0:ppc64el (1.52.1+ds-1build1) ...
133s Setting up libpangocairo-1.0-0:ppc64el (1.52.1+ds-1build1) ...
133s Setting up r-base-core (4.3.3-2build2) ...
134s 
134s Creating config file /etc/R/Renviron with new version
134s Setting up r-cran-lattice (0.22-5-1) ...
134s Setting up r-cran-pixmap (0.4-12-1) ...
134s Setting up r-cran-pkgkitten (0.2.3-1) ...
134s Setting up r-cran-littler (0.3.19-1) ...
134s Setting up r-cran-rcpp (1.0.12-1) ...
134s Setting up littler (0.3.19-1) ...
134s Setting up r-cran-mass (7.3-60.0.1-1) ...
134s Setting up r-cran-sp (1:2.1-2+dfsg-1) ...
134s Setting up r-cran-rcpparmadillo (0.12.8.1.0-1build1) ...
134s Setting up r-cran-ade4 (1.7-22-1) ...
134s Setting up r-cran-genoplotr (0.8.11+dfsg-2) ...
134s Setting up autopkgtest-satdep (0) ...
134s Processing triggers for man-db (2.12.0-4build1) ...
134s Processing triggers for install-info (7.1-3build2) ...
134s Processing triggers for libc-bin (2.39-0ubuntu8) ...
137s (Reading database ... 75962 files and directories currently installed.)
137s Removing autopkgtest-satdep (0) ...
138s autopkgtest [23:48:15]: test run-unit-test: [-----------------------
138s Test functionality
138s >>>>>>>>>>>>>>>>>>
138s Reference = [Escherichia_coli_str_K12_MG1655.fna]
138s Query = [Shigella_flexneri_2a_01.fna]
138s Kmer size = 16
138s Fragment length = 3000
138s Threads = 1
138s ANI output file = fastani.out
138s >>>>>>>>>>>>>>>>>>
138s INFO [thread 0], skch::main, Count of threads executing parallel_for : 1
138s INFO [thread 0], skch::Sketch::build, window size for minimizer sampling  = 24
138s INFO [thread 0], skch::Sketch::build, minimizers picked from reference = 371301
138s INFO [thread 0], skch::Sketch::index, unique minimizers = 361568
138s INFO [thread 0], skch::Sketch::computeFreqHist, Frequency histogram of minimizers = (1, 357382) ... (59, 1)
138s INFO [thread 0], skch::Sketch::computeFreqHist, consider all minimizers during lookup.
138s INFO [thread 0], skch::main, Time spent sketching the reference : 0.358073 sec
140s INFO [thread 0], skch::main, Time spent mapping fragments in query #1 : 1.40877 sec
140s INFO [thread 0], skch::main, Time spent post mapping : 0.00230356 sec
140s INFO [thread 0], skch::main, ready to exit the loop
140s INFO, skch::main, parallel_for execution finished
140s Shigella_flexneri_2a_01.fna	Escherichia_coli_str_K12_MG1655.fna	97.7507	1303	1608
140s Loading required package: ade4
140s Loading required package: grid
142s null device 
142s           1 
142s PASS
142s autopkgtest [23:48:19]: test run-unit-test: -----------------------]
142s run-unit-test        PASS
142s autopkgtest [23:48:19]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
143s autopkgtest [23:48:20]: @@@@@@@@@@@@@@@@@@@@ summary
143s run-unit-test        PASS
154s Creating nova instance adt-noble-ppc64el-fastani-20240418-234557-juju-7f2275-prod-proposed-migration-environment-3-72d234c7-d790-429d-9fd2-a3a03eeb63c9 from image adt/ubuntu-noble-ppc64el-server-20240418.img (UUID eb57e9e5-70fe-4878-ae85-dd88e864cb24)...