0s autopkgtest [23:45:28]: starting date and time: 2024-04-18 23:45:28+0000 0s autopkgtest [23:45:28]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [23:45:28]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8iva_z2q/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:gsl --apt-upgrade eigensoft --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=gsl/2.7.1+dfsg-6ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-ppc64el-18.secgroup --name adt-noble-ppc64el-eigensoft-20240418-234528-juju-7f2275-prod-proposed-migration-environment-2-b769877f-71e7-4405-a29d-67045c0f5911 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 615s autopkgtest [23:55:43]: testbed dpkg architecture: ppc64el 616s autopkgtest [23:55:44]: testbed apt version: 2.7.14build2 616s autopkgtest [23:55:44]: @@@@@@@@@@@@@@@@@@@@ test bed setup 616s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 617s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [2340 B] 617s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [12.2 kB] 617s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [57.5 kB] 617s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [381 kB] 617s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [112 kB] 617s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 617s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [976 B] 617s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 617s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [587 kB] 617s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 617s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [1004 B] 617s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 619s Fetched 1282 kB in 1s (1279 kB/s) 619s Reading package lists... 621s sh: 4: dhclient: not found 622s Reading package lists... 622s Building dependency tree... 622s Reading state information... 622s Calculating upgrade... 622s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 622s Reading package lists... 622s Building dependency tree... 622s Reading state information... 623s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 623s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 623s Get:2 http://ftpmaster.internal/ubuntu noble InRelease [255 kB] 624s Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [89.7 kB] 624s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 624s Get:5 http://ftpmaster.internal/ubuntu noble/main Sources [1383 kB] 625s Get:6 http://ftpmaster.internal/ubuntu noble/universe Sources [20.0 MB] 628s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el Packages [1337 kB] 628s Get:8 http://ftpmaster.internal/ubuntu noble/universe ppc64el Packages [15.1 MB] 634s Fetched 38.1 MB in 11s (3591 kB/s) 635s Reading package lists... 635s Reading package lists... 635s Building dependency tree... 635s Reading state information... 635s Calculating upgrade... 635s The following packages will be upgraded: 635s libnuma1 make netcat-openbsd numactl 635s 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 635s Need to get 332 kB of archives. 635s After this operation, 16.4 kB disk space will be freed. 635s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el netcat-openbsd ppc64el 1.226-1ubuntu2 [46.2 kB] 636s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libnuma1 ppc64el 2.0.18-1build1 [28.2 kB] 636s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el make ppc64el 4.3-4.1build2 [214 kB] 636s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el numactl ppc64el 2.0.18-1build1 [43.9 kB] 636s Fetched 332 kB in 1s (589 kB/s) 636s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 636s Preparing to unpack .../netcat-openbsd_1.226-1ubuntu2_ppc64el.deb ... 636s Unpacking netcat-openbsd (1.226-1ubuntu2) over (1.226-1ubuntu1) ... 636s Preparing to unpack .../libnuma1_2.0.18-1build1_ppc64el.deb ... 636s Unpacking libnuma1:ppc64el (2.0.18-1build1) over (2.0.18-1) ... 636s Preparing to unpack .../make_4.3-4.1build2_ppc64el.deb ... 636s Unpacking make (4.3-4.1build2) over (4.3-4.1build1) ... 636s Preparing to unpack .../numactl_2.0.18-1build1_ppc64el.deb ... 636s Unpacking numactl (2.0.18-1build1) over (2.0.18-1) ... 636s Setting up netcat-openbsd (1.226-1ubuntu2) ... 636s Setting up make (4.3-4.1build2) ... 636s Setting up libnuma1:ppc64el (2.0.18-1build1) ... 636s Setting up numactl (2.0.18-1build1) ... 636s Processing triggers for man-db (2.12.0-4build1) ... 637s Processing triggers for libc-bin (2.39-0ubuntu8) ... 637s Reading package lists... 638s Building dependency tree... 638s Reading state information... 638s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 641s autopkgtest [23:56:09]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP Thu Apr 4 22:47:57 UTC 2024 641s autopkgtest [23:56:09]: @@@@@@@@@@@@@@@@@@@@ apt-source eigensoft 643s Get:1 http://ftpmaster.internal/ubuntu noble/universe eigensoft 8.0.0+dfsg-2 (dsc) [2132 B] 643s Get:2 http://ftpmaster.internal/ubuntu noble/universe eigensoft 8.0.0+dfsg-2 (tar) [231 kB] 643s Get:3 http://ftpmaster.internal/ubuntu noble/universe eigensoft 8.0.0+dfsg-2 (diff) [6240 B] 643s gpgv: Signature made Wed Jan 31 18:19:21 2024 UTC 643s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 643s gpgv: issuer "tille@debian.org" 643s gpgv: Can't check signature: No public key 643s dpkg-source: warning: cannot verify inline signature for ./eigensoft_8.0.0+dfsg-2.dsc: no acceptable signature found 643s autopkgtest [23:56:11]: testing package eigensoft version 8.0.0+dfsg-2 643s autopkgtest [23:56:11]: build not needed 644s autopkgtest [23:56:12]: test test-working: preparing testbed 645s Reading package lists... 646s Building dependency tree... 646s Reading state information... 646s Starting pkgProblemResolver with broken count: 0 646s Starting 2 pkgProblemResolver with broken count: 0 646s Done 646s The following additional packages will be installed: 646s eigensoft libblas3 libgfortran5 libgsl27 libgslcblas0 liblapack3 liblapacke 646s libtmglib3 646s Suggested packages: 646s gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html 646s Recommended packages: 646s gnuplot 646s The following NEW packages will be installed: 646s autopkgtest-satdep eigensoft libblas3 libgfortran5 libgsl27 libgslcblas0 646s liblapack3 liblapacke libtmglib3 646s 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded. 646s Need to get 5757 kB/5758 kB of archives. 646s After this operation, 20.6 MB of additional disk space will be used. 646s Get:1 /tmp/autopkgtest.Cp0QiF/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [708 B] 646s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3build1 [227 kB] 647s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgslcblas0 ppc64el 2.7.1+dfsg-6ubuntu2 [86.6 kB] 647s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libgsl27 ppc64el 2.7.1+dfsg-6ubuntu2 [1090 kB] 648s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240412-0ubuntu1 [574 kB] 648s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3build1 [2804 kB] 649s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el libtmglib3 ppc64el 3.12.0-3build1 [144 kB] 649s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapacke ppc64el 3.12.0-3build1 [465 kB] 649s Get:9 http://ftpmaster.internal/ubuntu noble/universe ppc64el eigensoft ppc64el 8.0.0+dfsg-2 [368 kB] 649s Fetched 5757 kB in 3s (2166 kB/s) 649s Selecting previously unselected package libblas3:ppc64el. 649s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71981 files and directories currently installed.) 649s Preparing to unpack .../0-libblas3_3.12.0-3build1_ppc64el.deb ... 649s Unpacking libblas3:ppc64el (3.12.0-3build1) ... 649s Selecting previously unselected package libgslcblas0:ppc64el. 649s Preparing to unpack .../1-libgslcblas0_2.7.1+dfsg-6ubuntu2_ppc64el.deb ... 649s Unpacking libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ... 649s Selecting previously unselected package libgsl27:ppc64el. 649s Preparing to unpack .../2-libgsl27_2.7.1+dfsg-6ubuntu2_ppc64el.deb ... 649s Unpacking libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ... 649s Selecting previously unselected package libgfortran5:ppc64el. 649s Preparing to unpack .../3-libgfortran5_14-20240412-0ubuntu1_ppc64el.deb ... 649s Unpacking libgfortran5:ppc64el (14-20240412-0ubuntu1) ... 649s Selecting previously unselected package liblapack3:ppc64el. 649s Preparing to unpack .../4-liblapack3_3.12.0-3build1_ppc64el.deb ... 649s Unpacking liblapack3:ppc64el (3.12.0-3build1) ... 650s Selecting previously unselected package libtmglib3:ppc64el. 650s Preparing to unpack .../5-libtmglib3_3.12.0-3build1_ppc64el.deb ... 650s Unpacking libtmglib3:ppc64el (3.12.0-3build1) ... 650s Selecting previously unselected package liblapacke:ppc64el. 650s Preparing to unpack .../6-liblapacke_3.12.0-3build1_ppc64el.deb ... 650s Unpacking liblapacke:ppc64el (3.12.0-3build1) ... 650s Selecting previously unselected package eigensoft. 650s Preparing to unpack .../7-eigensoft_8.0.0+dfsg-2_ppc64el.deb ... 650s Unpacking eigensoft (8.0.0+dfsg-2) ... 650s Selecting previously unselected package autopkgtest-satdep. 650s Preparing to unpack .../8-1-autopkgtest-satdep.deb ... 650s Unpacking autopkgtest-satdep (0) ... 650s Setting up libgslcblas0:ppc64el (2.7.1+dfsg-6ubuntu2) ... 650s Setting up libgsl27:ppc64el (2.7.1+dfsg-6ubuntu2) ... 650s Setting up libblas3:ppc64el (3.12.0-3build1) ... 650s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 650s Setting up libgfortran5:ppc64el (14-20240412-0ubuntu1) ... 650s Setting up liblapack3:ppc64el (3.12.0-3build1) ... 650s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 650s Setting up libtmglib3:ppc64el (3.12.0-3build1) ... 650s Setting up liblapacke:ppc64el (3.12.0-3build1) ... 650s Setting up eigensoft (8.0.0+dfsg-2) ... 650s Setting up autopkgtest-satdep (0) ... 650s Processing triggers for man-db (2.12.0-4build1) ... 650s Processing triggers for libc-bin (2.39-0ubuntu8) ... 652s (Reading database ... 72245 files and directories currently installed.) 652s Removing autopkgtest-satdep (0) ... 653s autopkgtest [23:56:21]: test test-working: [----------------------- 653s error: eigenstrat do not print usage information 653s error: eigenstratQTL do not print usage information 653s error: pca do not print usage information 654s autopkgtest [23:56:22]: test test-working: -----------------------] 654s autopkgtest [23:56:22]: test test-working: - - - - - - - - - - results - - - - - - - - - - 654s test-working PASS 654s autopkgtest [23:56:22]: @@@@@@@@@@@@@@@@@@@@ summary 654s test-working PASS 686s Creating nova instance adt-noble-ppc64el-eigensoft-20240418-234528-juju-7f2275-prod-proposed-migration-environment-2-b769877f-71e7-4405-a29d-67045c0f5911 from image adt/ubuntu-noble-ppc64el-server-20240418.img (UUID af0116ce-26c5-4050-9dd9-30d9ab0ee27b)...