0s autopkgtest [20:05:45]: starting date and time: 2024-03-25 20:05:45+0000 0s autopkgtest [20:05:45]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [20:05:45]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0d2jy29b/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:cyvcf2,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade cyvcf2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=cyvcf2/0.30.28-1build1 curl/8.5.0-2ubuntu8 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-10.secgroup --name adt-noble-ppc64el-cyvcf2-20240325-200545-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 111s autopkgtest [20:07:36]: testbed dpkg architecture: ppc64el 112s autopkgtest [20:07:37]: testbed apt version: 2.7.12 112s autopkgtest [20:07:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 113s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 113s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3992 kB] 113s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB] 113s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [7608 B] 113s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.0 kB] 113s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [700 kB] 113s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 113s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 113s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 113s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4231 kB] 114s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 114s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [61.7 kB] 114s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 117s Fetched 9677 kB in 2s (4006 kB/s) 117s Reading package lists... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s Calculating upgrade... 120s The following packages will be REMOVED: 120s libssl3 120s The following NEW packages will be installed: 120s libssl3t64 120s The following packages have been kept back: 120s curl 120s The following packages will be upgraded: 120s openssl 121s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 121s Need to get 3151 kB of archives. 121s After this operation, 73.7 kB of additional disk space will be used. 121s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 121s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 122s Fetched 3151 kB in 2s (1984 kB/s) 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 122s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 122s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 123s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 123s wget depends on libssl3 (>= 3.0.0). 123s tnftp depends on libssl3 (>= 3.0.0). 123s tcpdump depends on libssl3 (>= 3.0.0). 123s systemd-resolved depends on libssl3 (>= 3.0.0). 123s systemd depends on libssl3 (>= 3.0.0). 123s sudo depends on libssl3 (>= 3.0.0). 123s rsync depends on libssl3 (>= 3.0.0). 123s python3-cryptography depends on libssl3 (>= 3.0.0). 123s openssh-server depends on libssl3 (>= 3.0.10). 123s openssh-client depends on libssl3 (>= 3.0.10). 123s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 123s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 123s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 123s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 123s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 123s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 123s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 123s libnvme1 depends on libssl3 (>= 3.0.0). 123s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 123s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 123s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 123s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 123s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 123s kmod depends on libssl3 (>= 3.0.0). 123s dhcpcd-base depends on libssl3 (>= 3.0.0). 123s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 123s 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 123s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 123s Selecting previously unselected package libssl3t64:ppc64el. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 123s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 123s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 123s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 123s Setting up openssl (3.0.13-0ubuntu2) ... 123s Processing triggers for man-db (2.12.0-3) ... 123s Processing triggers for libc-bin (2.39-0ubuntu6) ... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 125s sh: Attempting to set up Debian/Ubuntu apt sources automatically 125s sh: Distribution appears to be Ubuntu 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s eatmydata is already the newest version (131-1). 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s dbus is already the newest version (1.14.10-4ubuntu1). 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s rng-tools-debian is already the newest version (2.4). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s The following packages will be REMOVED: 127s cloud-init* python3-configobj* python3-debconf* 127s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 127s After this operation, 3256 kB disk space will be freed. 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 127s Removing cloud-init (24.1.2-0ubuntu1) ... 128s Removing python3-configobj (5.0.8-3) ... 128s Removing python3-debconf (1.5.86) ... 128s Processing triggers for man-db (2.12.0-3) ... 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 128s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 129s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 129s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 129s invoke-rc.d: policy-rc.d denied execution of try-restart. 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s linux-generic is already the newest version (6.8.0-11.11+1). 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 130s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 130s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 132s Reading package lists... 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s Calculating upgrade... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s autopkgtest [20:07:58]: rebooting testbed after setup commands that affected boot 176s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 184s autopkgtest [20:08:49]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 187s autopkgtest [20:08:52]: @@@@@@@@@@@@@@@@@@@@ apt-source cyvcf2 189s Get:1 http://ftpmaster.internal/ubuntu noble/universe cyvcf2 0.30.28-1 (dsc) [2426 B] 189s Get:2 http://ftpmaster.internal/ubuntu noble/universe cyvcf2 0.30.28-1 (tar) [420 kB] 189s Get:3 http://ftpmaster.internal/ubuntu noble/universe cyvcf2 0.30.28-1 (diff) [6612 B] 189s gpgv: Signature made Sun Feb 18 08:27:59 2024 UTC 189s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 189s gpgv: Can't check signature: No public key 189s dpkg-source: warning: cannot verify inline signature for ./cyvcf2_0.30.28-1.dsc: no acceptable signature found 189s autopkgtest [20:08:54]: testing package cyvcf2 version 0.30.28-1 190s autopkgtest [20:08:55]: build not needed 191s autopkgtest [20:08:56]: test run-unit-test: preparing testbed 193s Reading package lists... 194s Building dependency tree... 194s Reading state information... 194s Starting pkgProblemResolver with broken count: 0 194s Starting 2 pkgProblemResolver with broken count: 0 194s Done 194s The following additional packages will be installed: 194s libblas3 libdeflate0 libgfortran5 libhts3 libhtscodecs2 liblapack3 194s python3-all python3-click python3-colorama python3-coloredlogs 194s python3-cyvcf2 python3-humanfriendly python3-iniconfig python3-numpy 194s python3-packaging python3-pluggy python3-pytest 194s Suggested packages: 194s gcc gfortran python3-dev 194s The following NEW packages will be installed: 194s autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3 libhtscodecs2 194s liblapack3 python3-all python3-click python3-colorama python3-coloredlogs 194s python3-cyvcf2 python3-humanfriendly python3-iniconfig python3-numpy 194s python3-packaging python3-pluggy python3-pytest 194s 0 upgraded, 18 newly installed, 0 to remove and 0 not upgraded. 194s Need to get 11.6 MB/11.6 MB of archives. 194s After this operation, 57.3 MB of additional disk space will be used. 194s Get:1 /tmp/autopkgtest.ukTDIZ/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 194s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 195s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 195s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 195s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 195s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 196s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 197s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-all ppc64el 3.12.1-0ubuntu2 [904 B] 197s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 197s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-click all 8.1.6-1 [79.0 kB] 197s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-humanfriendly all 10.0-4 [70.5 kB] 197s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-coloredlogs all 15.0.1-1 [38.2 kB] 197s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 200s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cyvcf2 ppc64el 0.30.28-1 [1132 kB] 200s Get:15 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-iniconfig all 1.1.1-2 [6024 B] 200s Get:16 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-packaging all 23.2-1 [40.6 kB] 200s Get:17 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pluggy all 1.4.0-1 [20.4 kB] 200s Get:18 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pytest all 7.4.4-1 [305 kB] 200s Fetched 11.6 MB in 6s (1898 kB/s) 200s Selecting previously unselected package libblas3:ppc64el. 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 201s Preparing to unpack .../00-libblas3_3.12.0-3_ppc64el.deb ... 201s Unpacking libblas3:ppc64el (3.12.0-3) ... 201s Selecting previously unselected package libdeflate0:ppc64el. 201s Preparing to unpack .../01-libdeflate0_1.19-1_ppc64el.deb ... 201s Unpacking libdeflate0:ppc64el (1.19-1) ... 201s Selecting previously unselected package libgfortran5:ppc64el. 201s Preparing to unpack .../02-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 201s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 201s Selecting previously unselected package libhtscodecs2:ppc64el. 201s Preparing to unpack .../03-libhtscodecs2_1.6.0-1_ppc64el.deb ... 201s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 201s Selecting previously unselected package libhts3:ppc64el. 201s Preparing to unpack .../04-libhts3_1.18+ds-1_ppc64el.deb ... 201s Unpacking libhts3:ppc64el (1.18+ds-1) ... 201s Selecting previously unselected package liblapack3:ppc64el. 201s Preparing to unpack .../05-liblapack3_3.12.0-3_ppc64el.deb ... 201s Unpacking liblapack3:ppc64el (3.12.0-3) ... 201s Selecting previously unselected package python3-all. 201s Preparing to unpack .../06-python3-all_3.12.1-0ubuntu2_ppc64el.deb ... 201s Unpacking python3-all (3.12.1-0ubuntu2) ... 201s Selecting previously unselected package python3-colorama. 201s Preparing to unpack .../07-python3-colorama_0.4.6-4_all.deb ... 201s Unpacking python3-colorama (0.4.6-4) ... 201s Selecting previously unselected package python3-click. 201s Preparing to unpack .../08-python3-click_8.1.6-1_all.deb ... 201s Unpacking python3-click (8.1.6-1) ... 201s Selecting previously unselected package python3-humanfriendly. 201s Preparing to unpack .../09-python3-humanfriendly_10.0-4_all.deb ... 201s Unpacking python3-humanfriendly (10.0-4) ... 201s Selecting previously unselected package python3-coloredlogs. 201s Preparing to unpack .../10-python3-coloredlogs_15.0.1-1_all.deb ... 201s Unpacking python3-coloredlogs (15.0.1-1) ... 201s Selecting previously unselected package python3-numpy. 201s Preparing to unpack .../11-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 201s Unpacking python3-numpy (1:1.24.2-2) ... 201s Selecting previously unselected package python3-cyvcf2. 201s Preparing to unpack .../12-python3-cyvcf2_0.30.28-1_ppc64el.deb ... 201s Unpacking python3-cyvcf2 (0.30.28-1) ... 201s Selecting previously unselected package python3-iniconfig. 201s Preparing to unpack .../13-python3-iniconfig_1.1.1-2_all.deb ... 201s Unpacking python3-iniconfig (1.1.1-2) ... 201s Selecting previously unselected package python3-packaging. 201s Preparing to unpack .../14-python3-packaging_23.2-1_all.deb ... 201s Unpacking python3-packaging (23.2-1) ... 201s Selecting previously unselected package python3-pluggy. 201s Preparing to unpack .../15-python3-pluggy_1.4.0-1_all.deb ... 201s Unpacking python3-pluggy (1.4.0-1) ... 201s Selecting previously unselected package python3-pytest. 201s Preparing to unpack .../16-python3-pytest_7.4.4-1_all.deb ... 201s Unpacking python3-pytest (7.4.4-1) ... 201s Selecting previously unselected package autopkgtest-satdep. 201s Preparing to unpack .../17-1-autopkgtest-satdep.deb ... 201s Unpacking autopkgtest-satdep (0) ... 201s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 201s Setting up python3-iniconfig (1.1.1-2) ... 202s Setting up python3-colorama (0.4.6-4) ... 202s Setting up libdeflate0:ppc64el (1.19-1) ... 202s Setting up python3-all (3.12.1-0ubuntu2) ... 202s Setting up python3-click (8.1.6-1) ... 202s Setting up libblas3:ppc64el (3.12.0-3) ... 202s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 202s Setting up python3-packaging (23.2-1) ... 202s Setting up python3-humanfriendly (10.0-4) ... 202s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 202s Setting up python3-pluggy (1.4.0-1) ... 202s Setting up python3-coloredlogs (15.0.1-1) ... 202s Setting up liblapack3:ppc64el (3.12.0-3) ... 202s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 202s Setting up libhts3:ppc64el (1.18+ds-1) ... 202s Setting up python3-pytest (7.4.4-1) ... 203s Setting up python3-numpy (1:1.24.2-2) ... 205s Setting up python3-cyvcf2 (0.30.28-1) ... 205s Setting up autopkgtest-satdep (0) ... 205s Processing triggers for man-db (2.12.0-3) ... 206s Processing triggers for libc-bin (2.39-0ubuntu6) ... 208s (Reading database ... 71102 files and directories currently installed.) 208s Removing autopkgtest-satdep (0) ... 209s autopkgtest [20:09:14]: test run-unit-test: [----------------------- 209s Testing with python3.12 in /tmp/autopkgtest.ukTDIZ/autopkgtest_tmp: 209s ============================= test session starts ============================== 209s platform linux -- Python 3.12.2, pytest-7.4.4, pluggy-1.4.0 -- /usr/bin/python3.12 209s cachedir: .pytest_cache 209s rootdir: /tmp/autopkgtest.ukTDIZ/autopkgtest_tmp 209s collecting ... collected 112 items 209s 209s cyvcf2/tests/test_cli.py::test_version PASSED [ 0%] 210s cyvcf2/tests/test_hemi.py::test_hemi PASSED [ 1%] 210s cyvcf2/tests/test_reader.py::test_init PASSED [ 2%] 210s cyvcf2/tests/test_reader.py::test_type PASSED [ 3%] 210s cyvcf2/tests/test_reader.py::test_type_mnp PASSED [ 4%] 210s cyvcf2/tests/test_reader.py::test_format_str PASSED [ 5%] 210s cyvcf2/tests/test_reader.py::test_missing_samples PASSED [ 6%] 210s cyvcf2/tests/test_reader.py::test_ibd PASSED [ 7%] 210s cyvcf2/tests/test_reader.py::test_relatedness PASSED [ 8%] 210s cyvcf2/tests/test_reader.py::test_pls PASSED [ 8%] 210s cyvcf2/tests/test_reader.py::test_gt_alt_freqs PASSED [ 9%] 210s cyvcf2/tests/test_reader.py::test_str PASSED [ 10%] 210s cyvcf2/tests/test_reader.py::test_region PASSED [ 11%] 210s cyvcf2/tests/test_reader.py::test_empty_info PASSED [ 12%] 210s cyvcf2/tests/test_reader.py::test_phases PASSED [ 13%] 210s cyvcf2/tests/test_reader.py::test_bad_init PASSED [ 14%] 210s cyvcf2/tests/test_reader.py::test_samples PASSED [ 15%] 210s cyvcf2/tests/test_reader.py::test_next PASSED [ 16%] 210s cyvcf2/tests/test_reader.py::test_variant PASSED [ 16%] 210s cyvcf2/tests/test_reader.py::test_info_dict PASSED [ 17%] 210s cyvcf2/tests/test_reader.py::test_attrs PASSED [ 18%] 210s cyvcf2/tests/test_reader.py::test_empty PASSED [ 19%] 210s cyvcf2/tests/test_reader.py::test_format_field PASSED [ 20%] 210s cyvcf2/tests/test_reader.py::test_writer_from_string PASSED [ 21%] 210s cyvcf2/tests/test_reader.py::test_isa PASSED [ 22%] 210s cyvcf2/tests/test_reader.py::test_writer PASSED [ 23%] 210s cyvcf2/tests/test_reader.py::test_filters PASSED [ 24%] 210s cyvcf2/tests/test_reader.py::test_add_info_to_header PASSED [ 25%] 210s cyvcf2/tests/test_reader.py::test_read_flag PASSED [ 25%] 210s cyvcf2/tests/test_reader.py::test_add_flag PASSED [ 26%] 210s cyvcf2/tests/test_reader.py::test_issue198 PASSED [ 27%] 210s cyvcf2/tests/test_reader.py::test_constants PASSED [ 28%] 210s cyvcf2/tests/test_reader.py::test_add_filter_to_header PASSED [ 29%] 210s cyvcf2/tests/test_reader.py::test_seqnames PASSED [ 30%] 210s cyvcf2/tests/test_reader.py::test_different_index PASSED [ 31%] 210s cyvcf2/tests/test_reader.py::test_var_type PASSED [ 32%] 210s cyvcf2/tests/test_reader.py::test_header_info PASSED [ 33%] 210s cyvcf2/tests/test_reader.py::test_snpeff_header PASSED [ 33%] 210s cyvcf2/tests/test_reader.py::test_gt_types PASSED [ 34%] 210s cyvcf2/tests/test_reader.py::test_raw_header PASSED [ 35%] 210s cyvcf2/tests/test_reader.py::test_iterate PASSED [ 36%] 210s cyvcf2/tests/test_reader.py::test_empty_call PASSED [ 37%] 210s cyvcf2/tests/test_reader.py::test_haploid PASSED [ 38%] 210s cyvcf2/tests/test_reader.py::test_diploid PASSED [ 39%] 210s cyvcf2/tests/test_reader.py::test_format PASSED [ 40%] 210s cyvcf2/tests/test_reader.py::test_header_stuff PASSED [ 41%] 210s cyvcf2/tests/test_reader.py::test_bcf PASSED [ 41%] 210s cyvcf2/tests/test_reader.py::test_vcf_no_intervals PASSED [ 42%] 210s cyvcf2/tests/test_reader.py::test_issue12 PASSED [ 43%] 210s cyvcf2/tests/test_reader.py::test_gt_bases_nondiploid PASSED [ 44%] 210s cyvcf2/tests/test_reader.py::test_set_format_float PASSED [ 45%] 210s cyvcf2/tests/test_reader.py::test_set_format_int_a PASSED [ 46%] 210s cyvcf2/tests/test_reader.py::test_set_format_int_b PASSED [ 47%] 210s cyvcf2/tests/test_reader.py::test_set_format_int_c PASSED [ 48%] 210s cyvcf2/tests/test_reader.py::test_set_format_int3 PASSED [ 49%] 210s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_second_longer PASSED [ 50%] 210s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_first_longer PASSED [ 50%] 210s cyvcf2/tests/test_reader.py::test_set_format_str_bytes_number3 PASSED [ 51%] 210s cyvcf2/tests/test_reader.py::test_set_gts PASSED [ 52%] 210s cyvcf2/tests/test_reader.py::test_info_del PASSED [ 53%] 210s cyvcf2/tests/test_reader.py::test_filter_id PASSED [ 54%] 210s cyvcf2/tests/test_reader.py::test_access_gts PASSED [ 55%] 210s cyvcf2/tests/test_reader.py::test_access_genotype PASSED [ 56%] 210s cyvcf2/tests/test_reader.py::test_access_genotype_array PASSED [ 57%] 210s cyvcf2/tests/test_reader.py::test_alt_homozygous_gt PASSED [ 58%] 210s cyvcf2/tests/test_reader.py::test_write_missing_contig PASSED [ 58%] 210s cyvcf2/tests/test_reader.py::test_set_samples PASSED [ 59%] 210s cyvcf2/tests/test_reader.py::test_hrec PASSED [ 60%] 210s cyvcf2/tests/test_reader.py::test_issue44 PASSED [ 61%] 210s cyvcf2/tests/test_reader.py::test_id_field_updates PASSED [ 62%] 210s cyvcf2/tests/test_reader.py::test_set_pos PASSED [ 63%] 210s cyvcf2/tests/test_reader.py::test_set_chrom_when_contig_not_in_header PASSED [ 64%] 210s cyvcf2/tests/test_reader.py::test_set_chrom_after_contig_is_added_to_header PASSED [ 65%] 210s cyvcf2/tests/test_reader.py::test_set_qual PASSED [ 66%] 210s cyvcf2/tests/test_reader.py::test_strict_gt_option_flag PASSED [ 66%] 210s cyvcf2/tests/test_reader.py::test_alt_repr PASSED [ 67%] 210s cyvcf2/tests/test_reader.py::test_closed_iter PASSED [ 68%] 210s cyvcf2/tests/test_reader.py::test_issue72 PASSED [ 69%] 210s cyvcf2/tests/test_reader.py::test_is_transition PASSED [ 70%] 210s cyvcf2/tests/test_reader.py::test_decomposed PASSED [ 71%] 210s cyvcf2/tests/test_reader.py::test_fd PASSED [ 72%] 210s cyvcf2/tests/test_reader.py::test_set_reference PASSED [ 73%] 210s cyvcf2/tests/test_reader.py::test_set_alternates PASSED [ 74%] 210s cyvcf2/tests/test_reader.py::test_no_seqlen PASSED [ 75%] 210s cyvcf2/tests/test_reader.py::test_set_unknown_format PASSED [ 75%] 210s cyvcf2/tests/test_reader.py::test_invalid_header PASSED [ 76%] 210s cyvcf2/tests/test_reader.py::test_genotypes PASSED [ 77%] 210s cyvcf2/tests/test_reader.py::test_issue236 PASSED [ 78%] 210s cyvcf2/tests/test_reader.py::test_issue17_no_gt PASSED [ 79%] 210s cyvcf2/tests/test_reader.py::test_num_records_indexed[test.vcf.gz] PASSED [ 80%] 210s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-multiallelic-homozygous-alt.vcf.gz] PASSED [ 81%] 210s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-strict-gt-option-flag.vcf.gz0] PASSED [ 82%] 210s cyvcf2/tests/test_reader.py::test_num_records_indexed[test-strict-gt-option-flag.vcf.gz1] PASSED [ 83%] 210s cyvcf2/tests/test_reader.py::test_num_records_indexed[multi-contig.vcf.gz] PASSED [ 83%] 210s cyvcf2/tests/test_reader.py::test_num_records_indexed[multi-contig.bcf] PASSED [ 84%] 210s cyvcf2/tests/test_reader.py::test_num_records_indexed[test.snpeff.bcf] PASSED [ 85%] 210s cyvcf2/tests/test_reader.py::test_num_records_indexed_csi_tabix[csi] PASSED [ 86%] 210s cyvcf2/tests/test_reader.py::test_num_records_indexed_csi_tabix[tbi] PASSED [ 87%] 210s cyvcf2/tests/test_reader.py::test_num_records_set_index_multiple_times PASSED [ 88%] 210s cyvcf2/tests/test_reader.py::test_num_records_set_wrong_index PASSED [ 89%] 210s cyvcf2/tests/test_reader.py::test_num_records_no_index[test-genotypes.vcf] PASSED [ 90%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithVcfFname_returnsUncompressedVcf PASSED [ 91%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithBcfFname_returnsCompressedBcf PASSED [ 91%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithBcfFnameAndUncompressedMode_returnsUncompressedBcf PASSED [ 92%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithCompressedBcfFname_returnsCompressedBcf PASSED [ 93%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithCompressedVcfFname_returnsCompressedVcf PASSED [ 94%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithStdOut_returnsUncompressedVcf PASSED [ 95%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithNonVcfName_returnsUncompressedVcf PASSED [ 96%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithIntFname_returnsUncompressedVcf PASSED [ 97%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithHandle_returnsUncompressedVcf PASSED [ 98%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_defaultModeWithPosixPath_returnsUncompressedVcf PASSED [ 99%] 210s cyvcf2/tests/test_writer.py::TestFileModeInference::test_explicitMode_doesNotInferFromFname PASSED [100%] 210s 210s ============================= 112 passed in 1.28s ============================== 211s autopkgtest [20:09:16]: test run-unit-test: -----------------------] 211s run-unit-test PASS 211s autopkgtest [20:09:16]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 212s autopkgtest [20:09:17]: test autodep8-python3: preparing testbed 327s autopkgtest [20:11:12]: testbed dpkg architecture: ppc64el 327s autopkgtest [20:11:12]: testbed apt version: 2.7.12 327s autopkgtest [20:11:12]: @@@@@@@@@@@@@@@@@@@@ test bed setup 328s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 329s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3992 kB] 330s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.0 kB] 330s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [7608 B] 330s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB] 330s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [700 kB] 330s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 330s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 330s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 330s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4231 kB] 331s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 331s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [61.7 kB] 331s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 334s Fetched 9677 kB in 3s (2923 kB/s) 334s Reading package lists... 337s Reading package lists... 337s Building dependency tree... 337s Reading state information... 337s Calculating upgrade... 337s The following packages will be REMOVED: 337s libssl3 337s The following NEW packages will be installed: 337s libssl3t64 337s The following packages have been kept back: 337s curl 337s The following packages will be upgraded: 337s openssl 337s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 337s Need to get 3151 kB of archives. 337s After this operation, 73.7 kB of additional disk space will be used. 337s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 338s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 338s Fetched 3151 kB in 1s (2646 kB/s) 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 339s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 339s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 339s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 339s wget depends on libssl3 (>= 3.0.0). 339s tnftp depends on libssl3 (>= 3.0.0). 339s tcpdump depends on libssl3 (>= 3.0.0). 339s systemd-resolved depends on libssl3 (>= 3.0.0). 339s systemd depends on libssl3 (>= 3.0.0). 339s sudo depends on libssl3 (>= 3.0.0). 339s rsync depends on libssl3 (>= 3.0.0). 339s python3-cryptography depends on libssl3 (>= 3.0.0). 339s openssh-server depends on libssl3 (>= 3.0.10). 339s openssh-client depends on libssl3 (>= 3.0.10). 339s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 339s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 339s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 339s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 339s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 339s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 339s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 339s libnvme1 depends on libssl3 (>= 3.0.0). 339s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 339s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 339s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 339s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 339s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 339s kmod depends on libssl3 (>= 3.0.0). 339s dhcpcd-base depends on libssl3 (>= 3.0.0). 339s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 339s 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 339s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 339s Selecting previously unselected package libssl3t64:ppc64el. 339s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 339s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 339s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 339s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 339s Setting up openssl (3.0.13-0ubuntu2) ... 339s Processing triggers for man-db (2.12.0-3) ... 339s Processing triggers for libc-bin (2.39-0ubuntu6) ... 340s Reading package lists... 340s Building dependency tree... 340s Reading state information... 340s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 341s sh: Attempting to set up Debian/Ubuntu apt sources automatically 341s sh: Distribution appears to be Ubuntu 341s Reading package lists... 342s Building dependency tree... 342s Reading state information... 342s eatmydata is already the newest version (131-1). 342s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 342s Reading package lists... 342s Building dependency tree... 342s Reading state information... 342s dbus is already the newest version (1.14.10-4ubuntu1). 342s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 342s Reading package lists... 342s Building dependency tree... 342s Reading state information... 342s rng-tools-debian is already the newest version (2.4). 342s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 342s Reading package lists... 343s Building dependency tree... 343s Reading state information... 343s The following packages will be REMOVED: 343s cloud-init* python3-configobj* python3-debconf* 343s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 343s After this operation, 3256 kB disk space will be freed. 343s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 343s Removing cloud-init (24.1.2-0ubuntu1) ... 343s Removing python3-configobj (5.0.8-3) ... 343s Removing python3-debconf (1.5.86) ... 344s Processing triggers for man-db (2.12.0-3) ... 344s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 344s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 344s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 344s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 344s invoke-rc.d: policy-rc.d denied execution of try-restart. 345s Reading package lists... 345s Building dependency tree... 345s Reading state information... 345s linux-generic is already the newest version (6.8.0-11.11+1). 345s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 345s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 345s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 346s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 348s Reading package lists... 348s Reading package lists... 348s Building dependency tree... 348s Reading state information... 348s Calculating upgrade... 348s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 348s Reading package lists... 349s Building dependency tree... 349s Reading state information... 349s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 349s autopkgtest [20:11:34]: rebooting testbed after setup commands that affected boot 516s Reading package lists... 516s Building dependency tree... 516s Reading state information... 517s Starting pkgProblemResolver with broken count: 0 517s Starting 2 pkgProblemResolver with broken count: 0 517s Done 517s The following additional packages will be installed: 517s libblas3 libdeflate0 libgfortran5 libhts3 libhtscodecs2 liblapack3 517s python3-all python3-click python3-colorama python3-coloredlogs 517s python3-cyvcf2 python3-humanfriendly python3-numpy 517s Suggested packages: 517s gcc gfortran python3-dev python3-pytest 517s The following NEW packages will be installed: 517s autopkgtest-satdep libblas3 libdeflate0 libgfortran5 libhts3 libhtscodecs2 517s liblapack3 python3-all python3-click python3-colorama python3-coloredlogs 517s python3-cyvcf2 python3-humanfriendly python3-numpy 517s 0 upgraded, 14 newly installed, 0 to remove and 0 not upgraded. 517s Need to get 11.3 MB/11.3 MB of archives. 517s After this operation, 55.8 MB of additional disk space will be used. 517s Get:1 /tmp/autopkgtest.ukTDIZ/2-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [720 B] 517s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libblas3 ppc64el 3.12.0-3 [227 kB] 517s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 518s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el libgfortran5 ppc64el 14-20240303-1ubuntu1 [574 kB] 518s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 518s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB] 518s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el liblapack3 ppc64el 3.12.0-3 [2804 kB] 518s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-all ppc64el 3.12.1-0ubuntu2 [904 B] 518s Get:9 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-colorama all 0.4.6-4 [32.1 kB] 518s Get:10 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-click all 8.1.6-1 [79.0 kB] 518s Get:11 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-humanfriendly all 10.0-4 [70.5 kB] 518s Get:12 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-coloredlogs all 15.0.1-1 [38.2 kB] 518s Get:13 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-numpy ppc64el 1:1.24.2-2 [5581 kB] 519s Get:14 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-cyvcf2 ppc64el 0.30.28-1 [1132 kB] 519s Fetched 11.3 MB in 2s (5096 kB/s) 519s Selecting previously unselected package libblas3:ppc64el. 520s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 520s Preparing to unpack .../00-libblas3_3.12.0-3_ppc64el.deb ... 520s Unpacking libblas3:ppc64el (3.12.0-3) ... 520s Selecting previously unselected package libdeflate0:ppc64el. 520s Preparing to unpack .../01-libdeflate0_1.19-1_ppc64el.deb ... 520s Unpacking libdeflate0:ppc64el (1.19-1) ... 520s Selecting previously unselected package libgfortran5:ppc64el. 520s Preparing to unpack .../02-libgfortran5_14-20240303-1ubuntu1_ppc64el.deb ... 520s Unpacking libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 520s Selecting previously unselected package libhtscodecs2:ppc64el. 520s Preparing to unpack .../03-libhtscodecs2_1.6.0-1_ppc64el.deb ... 520s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 520s Selecting previously unselected package libhts3:ppc64el. 520s Preparing to unpack .../04-libhts3_1.18+ds-1_ppc64el.deb ... 520s Unpacking libhts3:ppc64el (1.18+ds-1) ... 520s Selecting previously unselected package liblapack3:ppc64el. 520s Preparing to unpack .../05-liblapack3_3.12.0-3_ppc64el.deb ... 520s Unpacking liblapack3:ppc64el (3.12.0-3) ... 520s Selecting previously unselected package python3-all. 520s Preparing to unpack .../06-python3-all_3.12.1-0ubuntu2_ppc64el.deb ... 520s Unpacking python3-all (3.12.1-0ubuntu2) ... 520s Selecting previously unselected package python3-colorama. 520s Preparing to unpack .../07-python3-colorama_0.4.6-4_all.deb ... 520s Unpacking python3-colorama (0.4.6-4) ... 520s Selecting previously unselected package python3-click. 520s Preparing to unpack .../08-python3-click_8.1.6-1_all.deb ... 520s Unpacking python3-click (8.1.6-1) ... 520s Selecting previously unselected package python3-humanfriendly. 520s Preparing to unpack .../09-python3-humanfriendly_10.0-4_all.deb ... 520s Unpacking python3-humanfriendly (10.0-4) ... 520s Selecting previously unselected package python3-coloredlogs. 520s Preparing to unpack .../10-python3-coloredlogs_15.0.1-1_all.deb ... 520s Unpacking python3-coloredlogs (15.0.1-1) ... 520s Selecting previously unselected package python3-numpy. 520s Preparing to unpack .../11-python3-numpy_1%3a1.24.2-2_ppc64el.deb ... 520s Unpacking python3-numpy (1:1.24.2-2) ... 520s Selecting previously unselected package python3-cyvcf2. 520s Preparing to unpack .../12-python3-cyvcf2_0.30.28-1_ppc64el.deb ... 520s Unpacking python3-cyvcf2 (0.30.28-1) ... 520s Selecting previously unselected package autopkgtest-satdep. 520s Preparing to unpack .../13-2-autopkgtest-satdep.deb ... 520s Unpacking autopkgtest-satdep (0) ... 520s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 520s Setting up python3-colorama (0.4.6-4) ... 520s Setting up libdeflate0:ppc64el (1.19-1) ... 520s Setting up python3-all (3.12.1-0ubuntu2) ... 520s Setting up python3-click (8.1.6-1) ... 521s Setting up libblas3:ppc64el (3.12.0-3) ... 521s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode 521s Setting up python3-humanfriendly (10.0-4) ... 521s Setting up libgfortran5:ppc64el (14-20240303-1ubuntu1) ... 521s Setting up python3-coloredlogs (15.0.1-1) ... 521s Setting up liblapack3:ppc64el (3.12.0-3) ... 521s update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode 521s Setting up libhts3:ppc64el (1.18+ds-1) ... 521s Setting up python3-numpy (1:1.24.2-2) ... 523s Setting up python3-cyvcf2 (0.30.28-1) ... 523s Setting up autopkgtest-satdep (0) ... 523s Processing triggers for man-db (2.12.0-3) ... 524s Processing triggers for libc-bin (2.39-0ubuntu6) ... 526s (Reading database ... 70938 files and directories currently installed.) 526s Removing autopkgtest-satdep (0) ... 528s autopkgtest [20:14:33]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import cyvcf2; print(cyvcf2)" ; done 528s autopkgtest [20:14:33]: test autodep8-python3: [----------------------- 529s Testing with python3.12: 529s 529s autopkgtest [20:14:34]: test autodep8-python3: -----------------------] 529s autopkgtest [20:14:34]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 529s autodep8-python3 PASS (superficial) 530s autopkgtest [20:14:35]: @@@@@@@@@@@@@@@@@@@@ summary 530s run-unit-test PASS 530s autodep8-python3 PASS (superficial) 541s Creating nova instance adt-noble-ppc64el-cyvcf2-20240325-200545-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240325.img (UUID ce50e202-ac12-4562-879d-419903f0141e)... 541s Creating nova instance adt-noble-ppc64el-cyvcf2-20240325-200545-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240325.img (UUID ce50e202-ac12-4562-879d-419903f0141e)...