0s autopkgtest [15:44:58]: starting date and time: 2024-03-23 15:44:58+0000 0s autopkgtest [15:44:58]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [15:44:58]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.r1vr9zo2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:samtools,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade bioawk --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=samtools/1.19.2-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-8.secgroup --name adt-noble-ppc64el-bioawk-20240323-154458-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 90s autopkgtest [15:46:28]: testbed dpkg architecture: ppc64el 90s autopkgtest [15:46:28]: testbed apt version: 2.7.12 90s autopkgtest [15:46:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 91s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 91s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB] 92s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 92s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 93s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 93s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB] 93s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 93s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 93s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 93s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB] 93s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 93s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB] 93s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 96s Fetched 9623 kB in 3s (2797 kB/s) 96s Reading package lists... 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 100s The following packages will be REMOVED: 100s libssl3 100s The following NEW packages will be installed: 100s libssl3t64 100s The following packages have been kept back: 100s curl 100s The following packages will be upgraded: 100s openssl 100s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 100s Need to get 3151 kB of archives. 100s After this operation, 73.7 kB of additional disk space will be used. 100s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 100s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 101s Fetched 3151 kB in 1s (4521 kB/s) 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 101s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ... 101s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 101s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 101s wget depends on libssl3 (>= 3.0.0). 101s tnftp depends on libssl3 (>= 3.0.0). 101s tcpdump depends on libssl3 (>= 3.0.0). 101s systemd-resolved depends on libssl3 (>= 3.0.0). 101s systemd depends on libssl3 (>= 3.0.0). 101s sudo depends on libssl3 (>= 3.0.0). 101s rsync depends on libssl3 (>= 3.0.0). 101s python3-cryptography depends on libssl3 (>= 3.0.0). 101s openssh-server depends on libssl3 (>= 3.0.10). 101s openssh-client depends on libssl3 (>= 3.0.10). 101s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 101s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 101s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 101s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 101s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 101s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 101s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 101s libnvme1 depends on libssl3 (>= 3.0.0). 101s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 101s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 101s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 101s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 101s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 101s kmod depends on libssl3 (>= 3.0.0). 101s dhcpcd-base depends on libssl3 (>= 3.0.0). 101s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 101s 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 101s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 101s Selecting previously unselected package libssl3t64:ppc64el. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70145 files and directories currently installed.) 101s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 101s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 101s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 101s Setting up openssl (3.0.13-0ubuntu2) ... 101s Processing triggers for man-db (2.12.0-3) ... 102s Processing triggers for libc-bin (2.39-0ubuntu6) ... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 103s sh: Attempting to set up Debian/Ubuntu apt sources automatically 103s sh: Distribution appears to be Ubuntu 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s eatmydata is already the newest version (131-1). 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s dbus is already the newest version (1.14.10-4ubuntu1). 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s rng-tools-debian is already the newest version (2.4). 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s The following packages will be REMOVED: 105s cloud-init* python3-configobj* python3-debconf* 105s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 105s After this operation, 3256 kB disk space will be freed. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 105s Removing cloud-init (24.1.2-0ubuntu1) ... 106s Removing python3-configobj (5.0.8-3) ... 106s Removing python3-debconf (1.5.86) ... 106s Processing triggers for man-db (2.12.0-3) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69769 files and directories currently installed.) 106s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 107s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 107s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 107s invoke-rc.d: policy-rc.d denied execution of try-restart. 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s linux-generic is already the newest version (6.8.0-11.11+1). 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 108s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 108s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 110s Reading package lists... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s Calculating upgrade... 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s autopkgtest [15:46:49]: rebooting testbed after setup commands that affected boot 284s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 290s autopkgtest [15:49:48]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024 293s autopkgtest [15:49:51]: @@@@@@@@@@@@@@@@@@@@ apt-source bioawk 295s Get:1 http://ftpmaster.internal/ubuntu noble/universe bioawk 1.0-4 (dsc) [2025 B] 295s Get:2 http://ftpmaster.internal/ubuntu noble/universe bioawk 1.0-4 (tar) [72.1 kB] 295s Get:3 http://ftpmaster.internal/ubuntu noble/universe bioawk 1.0-4 (diff) [5268 B] 295s gpgv: Signature made Wed Mar 17 18:01:06 2021 UTC 295s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 295s gpgv: issuer "npatra974@gmail.com" 295s gpgv: Can't check signature: No public key 295s dpkg-source: warning: cannot verify inline signature for ./bioawk_1.0-4.dsc: no acceptable signature found 295s autopkgtest [15:49:53]: testing package bioawk version 1.0-4 295s autopkgtest [15:49:53]: build not needed 295s autopkgtest [15:49:53]: test run-unit-test: preparing testbed 297s Reading package lists... 297s Building dependency tree... 297s Reading state information... 297s Starting pkgProblemResolver with broken count: 0 297s Starting 2 pkgProblemResolver with broken count: 0 297s Done 298s The following additional packages will be installed: 298s bioawk samtools-test seqkit-examples 298s Recommended packages: 298s libio-pty-perl 298s The following NEW packages will be installed: 298s autopkgtest-satdep bioawk samtools-test seqkit-examples 298s 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 298s Need to get 42.2 MB/42.2 MB of archives. 298s After this operation, 57.7 MB of additional disk space will be used. 298s Get:1 /tmp/autopkgtest.XwnEpL/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [728 B] 298s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el bioawk ppc64el 1.0-4 [69.0 kB] 298s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools-test all 1.19.2-1 [2401 kB] 298s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el seqkit-examples all 2.3.1+ds-2 [39.7 MB] 300s Fetched 42.2 MB in 2s (24.9 MB/s) 300s Selecting previously unselected package bioawk. 300s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69714 files and directories currently installed.) 300s Preparing to unpack .../bioawk_1.0-4_ppc64el.deb ... 300s Unpacking bioawk (1.0-4) ... 300s Selecting previously unselected package samtools-test. 300s Preparing to unpack .../samtools-test_1.19.2-1_all.deb ... 300s Unpacking samtools-test (1.19.2-1) ... 300s Selecting previously unselected package seqkit-examples. 300s Preparing to unpack .../seqkit-examples_2.3.1+ds-2_all.deb ... 300s Unpacking seqkit-examples (2.3.1+ds-2) ... 300s Selecting previously unselected package autopkgtest-satdep. 300s Preparing to unpack .../1-autopkgtest-satdep.deb ... 300s Unpacking autopkgtest-satdep (0) ... 300s Setting up bioawk (1.0-4) ... 300s Setting up seqkit-examples (2.3.1+ds-2) ... 300s Setting up samtools-test (1.19.2-1) ... 300s Setting up autopkgtest-satdep (0) ... 300s Processing triggers for man-db (2.12.0-3) ... 302s (Reading database ... 70504 files and directories currently installed.) 302s Removing autopkgtest-satdep (0) ... 303s autopkgtest [15:50:01]: test run-unit-test: [----------------------- 303s Test 1 - Get length for sequences 303s ================================= 303s PASS 303s Test 2 - Get reverse compliment 303s ================================== 303s PASS 303s Test 3 - Convert FASTA to tabular form 303s ================================== 303s PASS 303s Test 4 - Print feature length 303s ================================== 303s PASS 303s Test 5 - Extract mapped reads 303s ================================== 303s PASS 304s autopkgtest [15:50:02]: test run-unit-test: -----------------------] 304s autopkgtest [15:50:02]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 304s run-unit-test PASS 304s autopkgtest [15:50:02]: @@@@@@@@@@@@@@@@@@@@ summary 304s run-unit-test PASS 317s Creating nova instance adt-noble-ppc64el-bioawk-20240323-154458-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...