0s autopkgtest [11:53:36]: starting date and time: 2024-03-27 11:53:36+0000 0s autopkgtest [11:53:36]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [11:53:36]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cj27n_1r/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed --apt-upgrade bcftools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=bcftools/1.19-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos02-ppc64el-9.secgroup --name adt-noble-ppc64el-bcftools-20240327-115336-juju-7f2275-prod-proposed-migration-environment-3-1fbe8d76-a780-48a8-a370-211342df4941 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 301s autopkgtest [11:58:37]: testbed dpkg architecture: ppc64el 301s autopkgtest [11:58:37]: testbed apt version: 2.7.12 301s autopkgtest [11:58:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 302s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 302s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [55.4 kB] 302s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB] 303s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3958 kB] 303s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [8504 B] 303s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [692 kB] 303s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B] 303s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B] 303s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B] 303s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4210 kB] 304s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B] 304s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [62.2 kB] 304s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B] 307s Fetched 9610 kB in 3s (3116 kB/s) 308s Reading package lists... 309s Reading package lists... 310s Building dependency tree... 310s Reading state information... 310s Calculating upgrade... 310s The following packages will be upgraded: 310s binutils binutils-common binutils-powerpc64le-linux-gnu libbinutils 310s libctf-nobfd0 libctf0 libexpat1 libsframe1 310s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 310s Need to get 3734 kB of archives. 310s After this operation, 2048 B disk space will be freed. 310s Get:1 http://ftpmaster.internal/ubuntu noble/main ppc64el libexpat1 ppc64el 2.6.1-2 [101 kB] 310s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libctf0 ppc64el 2.42-4ubuntu1 [112 kB] 310s Get:3 http://ftpmaster.internal/ubuntu noble/main ppc64el libctf-nobfd0 ppc64el 2.42-4ubuntu1 [112 kB] 310s Get:4 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.42-4ubuntu1 [2473 kB] 311s Get:5 http://ftpmaster.internal/ubuntu noble/main ppc64el libbinutils ppc64el 2.42-4ubuntu1 [699 kB] 311s Get:6 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils ppc64el 2.42-4ubuntu1 [3078 B] 311s Get:7 http://ftpmaster.internal/ubuntu noble/main ppc64el binutils-common ppc64el 2.42-4ubuntu1 [217 kB] 311s Get:8 http://ftpmaster.internal/ubuntu noble/main ppc64el libsframe1 ppc64el 2.42-4ubuntu1 [16.0 kB] 311s Fetched 3734 kB in 1s (4445 kB/s) 311s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 311s Preparing to unpack .../0-libexpat1_2.6.1-2_ppc64el.deb ... 311s Unpacking libexpat1:ppc64el (2.6.1-2) over (2.6.0-1) ... 311s Preparing to unpack .../1-libctf0_2.42-4ubuntu1_ppc64el.deb ... 311s Unpacking libctf0:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 311s Preparing to unpack .../2-libctf-nobfd0_2.42-4ubuntu1_ppc64el.deb ... 311s Unpacking libctf-nobfd0:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 311s Preparing to unpack .../3-binutils-powerpc64le-linux-gnu_2.42-4ubuntu1_ppc64el.deb ... 311s Unpacking binutils-powerpc64le-linux-gnu (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 311s Preparing to unpack .../4-libbinutils_2.42-4ubuntu1_ppc64el.deb ... 311s Unpacking libbinutils:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 311s Preparing to unpack .../5-binutils_2.42-4ubuntu1_ppc64el.deb ... 311s Unpacking binutils (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 311s Preparing to unpack .../6-binutils-common_2.42-4ubuntu1_ppc64el.deb ... 311s Unpacking binutils-common:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 312s Preparing to unpack .../7-libsframe1_2.42-4ubuntu1_ppc64el.deb ... 312s Unpacking libsframe1:ppc64el (2.42-4ubuntu1) over (2.42-3ubuntu1) ... 312s Setting up libexpat1:ppc64el (2.6.1-2) ... 312s Setting up binutils-common:ppc64el (2.42-4ubuntu1) ... 312s Setting up libctf-nobfd0:ppc64el (2.42-4ubuntu1) ... 312s Setting up libsframe1:ppc64el (2.42-4ubuntu1) ... 312s Setting up libbinutils:ppc64el (2.42-4ubuntu1) ... 312s Setting up libctf0:ppc64el (2.42-4ubuntu1) ... 312s Setting up binutils-powerpc64le-linux-gnu (2.42-4ubuntu1) ... 312s Setting up binutils (2.42-4ubuntu1) ... 312s Processing triggers for libc-bin (2.39-0ubuntu6) ... 312s Processing triggers for man-db (2.12.0-3) ... 312s Reading package lists... 312s Building dependency tree... 312s Reading state information... 313s 0 upgraded, 0 newly installed, 0 to remove and 240 not upgraded. 313s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 313s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 313s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 313s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 315s Reading package lists... 315s Reading package lists... 315s Building dependency tree... 315s Reading state information... 315s Calculating upgrade... 315s The following packages were automatically installed and are no longer required: 315s libaio1 libnetplan0 python3-distutils python3-lib2to3 315s Use 'sudo apt autoremove' to remove them. 315s The following packages will be REMOVED: 315s libapt-pkg6.0 libarchive13 libatm1 libcurl3-gnutls libcurl4 libdb5.3 libelf1 315s libext2fs2 libgdbm-compat4 libgdbm6 libglib2.0-0 libgnutls30 libgpgme11 315s libhogweed6 libmagic1 libnettle8 libnpth0 libnvme1 libparted2 libperl5.38 315s libpng16-16 libpsl5 libreadline8 libreiserfscore0 libssl3 libtirpc3 liburcu8 315s libuv1 315s The following NEW packages will be installed: 315s bpfcc-tools bpftrace fontconfig-config fonts-dejavu-core fonts-dejavu-mono 315s ieee-data libaio1t64 libapt-pkg6.0t64 libarchive13t64 libatm1t64 libbpfcc 315s libc-dev-bin libc-devtools libc6-dev libclang-cpp18 libclang1-18 315s libcrypt-dev libcurl3t64-gnutls libcurl4t64 libdb5.3t64 libdeflate0 315s libdw1t64 libelf1t64 libext2fs2t64 libfontconfig1 libgd3 libgdbm-compat4t64 315s libgdbm6t64 libglib2.0-0t64 libgnutls30t64 libgpgme11t64 libhogweed6t64 315s libjbig0 libjpeg-turbo8 libjpeg8 liblerc4 libllvm18 libmagic1t64 libnetplan1 315s libnettle8t64 libnpth0t64 libnvme1t64 libparted2t64 libperl5.38t64 315s libpng16-16t64 libpsl5t64 libreadline8t64 libreiserfscore0t64 libsharpyuv0 315s libssl3t64 libtiff6 libtirpc3t64 libunwind8 liburcu8t64 libuv1t64 libwebp7 315s libxpm4 linux-headers-6.8.0-20 linux-headers-6.8.0-20-generic 315s linux-image-6.8.0-20-generic linux-libc-dev linux-modules-6.8.0-20-generic 315s linux-modules-extra-6.8.0-20-generic linux-tools-6.8.0-20 315s linux-tools-6.8.0-20-generic linux-tools-common manpages manpages-dev 315s python3-bpfcc python3-netaddr rpcsvc-proto ubuntu-kernel-accessories 315s xdg-user-dirs 315s The following packages will be upgraded: 315s apparmor apt apt-utils base-files bash bc bind9-dnsutils bind9-host 315s bind9-libs bolt bsdextrautils bsdutils btrfs-progs coreutils cryptsetup-bin 315s curl dbus dbus-bin dbus-daemon dbus-session-bus-common 315s dbus-system-bus-common dbus-user-session dhcpcd-base dirmngr dmsetup dpkg 315s dpkg-dev e2fsprogs e2fsprogs-l10n eject fdisk file ftp fwupd gawk 315s gcc-13-base gcc-14-base gir1.2-girepository-2.0 gir1.2-glib-2.0 gnupg 315s gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpgconf gpgsm gpgv 315s groff-base grub-common grub-ieee1275 grub-ieee1275-bin grub2-common 315s ibverbs-providers inetutils-telnet info initramfs-tools initramfs-tools-bin 315s initramfs-tools-core install-info iproute2 jq keyboxd kmod kpartx 315s krb5-locales libapparmor1 libaudit-common libaudit1 libblkid1 315s libblockdev-crypto3 libblockdev-fs3 libblockdev-loop3 libblockdev-mdraid3 315s libblockdev-nvme3 libblockdev-part3 libblockdev-swap3 libblockdev-utils3 315s libblockdev3 libbpf1 libbrotli1 libcap-ng0 libcom-err2 libcryptsetup12 315s libdbus-1-3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl 315s libevent-core-2.1-7 libfdisk1 libfido2-1 libfreetype6 libftdi1-2 libfwupd2 315s libgcc-s1 libgirepository-1.0-1 libglib2.0-data libgssapi-krb5-2 315s libgudev-1.0-0 libgusb2 libibverbs1 libjcat1 libjq1 libjson-glib-1.0-0 315s libjson-glib-1.0-common libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 315s libldap-common libldap2 liblocale-gettext-perl liblzma5 libmagic-mgc 315s libmbim-glib4 libmbim-proxy libmm-glib0 libmount1 libnghttp2-14 libnsl2 315s libnss-systemd libpam-modules libpam-modules-bin libpam-runtime 315s libpam-systemd libpam0g libplymouth5 libpolkit-agent-1-0 315s libpolkit-gobject-1-0 libproc2-0 libprotobuf-c1 libpython3-stdlib 315s libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal 315s libpython3.12-stdlib libqmi-glib5 libqmi-proxy libqrtr-glib0 librtmp1 315s libsasl2-2 libsasl2-modules libsasl2-modules-db libseccomp2 libselinux1 315s libsemanage-common libsemanage2 libslang2 libsmartcols1 libsqlite3-0 libss2 315s libssh-4 libstdc++6 libsystemd-shared libsystemd0 libtext-charwidth-perl 315s libtext-iconv-perl libtirpc-common libudev1 libudisks2-0 libusb-1.0-0 315s libuuid1 libvolume-key1 libxml2 libxmlb2 libxmuu1 linux-generic 315s linux-headers-generic linux-headers-virtual linux-image-generic 315s linux-image-virtual linux-virtual logsave lshw lsof man-db motd-news-config 315s mount mtr-tiny multipath-tools netplan-generator netplan.io openssh-client 315s openssh-server openssh-sftp-server openssl parted perl perl-base 315s perl-modules-5.38 pinentry-curses plymouth plymouth-theme-ubuntu-text procps 315s python-apt-common python3 python3-apt python3-cryptography python3-dbus 315s python3-distutils python3-gdbm python3-gi python3-lib2to3 python3-minimal 315s python3-netplan python3-pkg-resources python3-pyrsistent python3-setuptools 315s python3-typing-extensions python3-yaml python3.11 python3.11-minimal 315s python3.12 python3.12-minimal readline-common rsync rsyslog shared-mime-info 315s sudo systemd systemd-dev systemd-resolved systemd-sysv systemd-timesyncd 315s tcpdump telnet tnftp ubuntu-pro-client ubuntu-pro-client-l10n udev udisks2 315s usb.ids util-linux uuid-runtime vim-common vim-tiny wget xxd xz-utils zlib1g 316s 240 upgraded, 73 newly installed, 28 to remove and 0 not upgraded. 316s Need to get 386 MB of archives. 316s After this operation, 640 MB of additional disk space will be used. 316s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el motd-news-config all 13ubuntu8 [5098 B] 316s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el base-files ppc64el 13ubuntu8 [74.5 kB] 316s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bash ppc64el 5.2.21-2ubuntu3 [977 kB] 316s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bsdutils ppc64el 1:2.39.3-9ubuntu2 [98.3 kB] 316s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el coreutils ppc64el 9.4-3ubuntu3 [1523 kB] 317s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudisks2-0 ppc64el 2.10.1-6 [182 kB] 317s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el udisks2 ppc64el 2.10.1-6 [344 kB] 317s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el shared-mime-info ppc64el 2.4-1build1 [481 kB] 317s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gir1.2-girepository-2.0 ppc64el 1.79.1-1ubuntu6 [24.8 kB] 317s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gir1.2-glib-2.0 ppc64el 2.79.3-3ubuntu5 [182 kB] 317s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgirepository-1.0-1 ppc64el 1.79.1-1ubuntu6 [93.8 kB] 317s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-gi ppc64el 3.47.0-3build1 [261 kB] 317s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-dbus ppc64el 1.3.2-5build2 [107 kB] 317s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnetplan1 ppc64el 1.0-1 [136 kB] 317s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-netplan ppc64el 1.0-1 [21.8 kB] 317s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el netplan-generator ppc64el 1.0-1 [59.2 kB] 317s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools-bin ppc64el 0.142ubuntu23 [21.0 kB] 317s Get:18 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools-core all 0.142ubuntu23 [50.1 kB] 317s Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el initramfs-tools all 0.142ubuntu23 [9058 B] 317s Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el netplan.io ppc64el 1.0-1 [66.2 kB] 317s Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxmlb2 ppc64el 0.3.15-1build1 [82.6 kB] 317s Get:22 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgpgme11t64 ppc64el 1.18.0-4.1ubuntu3 [173 kB] 317s Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libvolume-key1 ppc64el 0.3.12-7build1 [47.9 kB] 317s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqrtr-glib0 ppc64el 1.2.2-1ubuntu3 [18.3 kB] 317s Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqmi-glib5 ppc64el 1.35.2-0ubuntu1 [966 kB] 317s Get:26 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libqmi-proxy ppc64el 1.35.2-0ubuntu1 [6208 B] 317s Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpolkit-agent-1-0 ppc64el 124-1ubuntu1 [18.8 kB] 317s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpolkit-gobject-1-0 ppc64el 124-1ubuntu1 [52.7 kB] 317s Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmm-glib0 ppc64el 1.23.4-0ubuntu1 [282 kB] 317s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmbim-glib4 ppc64el 1.31.2-0ubuntu2 [253 kB] 317s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmbim-proxy ppc64el 1.31.2-0ubuntu2 [6274 B] 317s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjson-glib-1.0-common all 1.8.0-2build1 [4210 B] 317s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjson-glib-1.0-0 ppc64el 1.8.0-2build1 [73.6 kB] 317s Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgusb2 ppc64el 0.4.8-1build1 [43.0 kB] 317s Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgudev-1.0-0 ppc64el 1:238-3ubuntu2 [15.8 kB] 317s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el tnftp ppc64el 20230507-2build1 [116 kB] 317s Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el tcpdump ppc64el 4.99.4-3ubuntu2 [543 kB] 318s Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd0 ppc64el 255.4-1ubuntu5 [526 kB] 318s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-dev all 255.4-1ubuntu5 [103 kB] 318s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnss-systemd ppc64el 255.4-1ubuntu5 [208 kB] 318s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libudev1 ppc64el 255.4-1ubuntu5 [200 kB] 318s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB] 318s Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd ppc64el 255.4-1ubuntu5 [3771 kB] 318s Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el udev ppc64el 255.4-1ubuntu5 [2038 kB] 318s Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-sysv ppc64el 255.4-1ubuntu5 [11.9 kB] 318s Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-systemd ppc64el 255.4-1ubuntu5 [304 kB] 318s Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-timesyncd ppc64el 255.4-1ubuntu5 [37.9 kB] 318s Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsystemd-shared ppc64el 255.4-1ubuntu5 [2351 kB] 319s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el systemd-resolved ppc64el 255.4-1ubuntu5 [346 kB] 319s Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el sudo ppc64el 1.9.15p5-3ubuntu3 [1005 kB] 319s Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el rsync ppc64el 3.2.7-1build1 [487 kB] 319s Get:52 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-cryptography ppc64el 41.0.7-4build2 [860 kB] 319s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB] 319s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-sftp-server ppc64el 1:9.6p1-3ubuntu11 [43.7 kB] 319s Get:55 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-client ppc64el 1:9.6p1-3ubuntu11 [1112 kB] 319s Get:56 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssh-server ppc64el 1:9.6p1-3ubuntu11 [627 kB] 319s Get:57 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssh-4 ppc64el 0.10.6-2build1 [234 kB] 319s Get:58 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-modules ppc64el 2.1.28+dfsg1-5ubuntu1 [83.1 kB] 319s Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.12 ppc64el 3.12.2-4build3 [645 kB] 319s Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.12-minimal ppc64el 3.12.2-4build3 [2447 kB] 319s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.12-minimal ppc64el 3.12.2-4build3 [836 kB] 320s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-ieee1275 ppc64el 2.12-1ubuntu5 [63.1 kB] 320s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub2-common ppc64el 2.12-1ubuntu5 [752 kB] 320s Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-common ppc64el 2.12-1ubuntu5 [2356 kB] 320s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el grub-ieee1275-bin ppc64el 2.12-1ubuntu5 [687 kB] 320s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libparted2t64 ppc64el 3.6-3.1build2 [184 kB] 320s Get:67 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el parted ppc64el 3.6-3.1build2 [58.9 kB] 320s Get:68 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.11 ppc64el 3.11.8-1build4 [589 kB] 320s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3.11-minimal ppc64el 3.11.8-1build4 [2292 kB] 320s Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.11-minimal ppc64el 3.11.8-1build4 [846 kB] 320s Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.11-stdlib ppc64el 3.11.8-1build4 [1977 kB] 320s Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg-utils ppc64el 2.4.4-2ubuntu15 [123 kB] 320s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg-agent ppc64el 2.4.4-2ubuntu15 [275 kB] 320s Get:74 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg-wks-client ppc64el 2.4.4-2ubuntu15 [85.0 kB] 320s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpg ppc64el 2.4.4-2ubuntu15 [706 kB] 320s Get:76 http://ftpmaster.internal/ubuntu noble/main ppc64el libnpth0t64 ppc64el 1.6-3.1 [8864 B] 320s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgv ppc64el 2.4.4-2ubuntu15 [198 kB] 320s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dirmngr ppc64el 2.4.4-2ubuntu15 [391 kB] 320s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg all 2.4.4-2ubuntu15 [359 kB] 320s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el keyboxd ppc64el 2.4.4-2ubuntu15 [94.3 kB] 320s Get:81 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgconf ppc64el 2.4.4-2ubuntu15 [115 kB] 320s Get:82 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gpgsm ppc64el 2.4.4-2ubuntu15 [292 kB] 320s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libreadline8t64 ppc64el 8.2-4 [182 kB] 320s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gawk ppc64el 1:5.2.1-2build2 [528 kB] 320s Get:85 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fdisk ppc64el 2.39.3-9ubuntu2 [132 kB] 321s Get:86 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bc ppc64el 1.07.1-3ubuntu2 [93.2 kB] 321s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3.12-stdlib ppc64el 3.12.2-4build3 [2082 kB] 321s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-base ppc64el 5.38.2-3.2 [1916 kB] 321s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl-modules-5.38 all 5.38.2-3.2 [3110 kB] 321s Get:90 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-gdbm ppc64el 3.12.2-3ubuntu1.1 [19.8 kB] 321s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el man-db ppc64el 2.12.0-3build4 [1274 kB] 321s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm6t64 ppc64el 1.23-5.1 [41.9 kB] 321s Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgdbm-compat4t64 ppc64el 1.23-5.1 [6972 B] 321s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libperl5.38t64 ppc64el 5.38.2-3.2 [4957 kB] 321s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el perl ppc64el 5.38.2-3.2 [231 kB] 321s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdb5.3t64 ppc64el 5.3.28+dfsg2-6 [875 kB] 322s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-modules-db ppc64el 2.1.28+dfsg1-5ubuntu1 [23.4 kB] 322s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsasl2-2 ppc64el 2.1.28+dfsg1-5ubuntu1 [68.0 kB] 322s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnvme1t64 ppc64el 1.8-3 [98.2 kB] 322s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el wget ppc64el 1.21.4-1ubuntu2 [382 kB] 322s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl4t64 ppc64el 8.5.0-2ubuntu8 [428 kB] 322s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el curl ppc64el 8.5.0-2ubuntu8 [234 kB] 322s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpsl5t64 ppc64el 0.21.2-1.1 [59.0 kB] 322s Get:104 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libarchive13t64 ppc64el 3.7.2-1.1ubuntu2 [518 kB] 322s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el fwupd ppc64el 1.9.15-2 [4634 kB] 324s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcurl3t64-gnutls ppc64el 8.5.0-2ubuntu8 [419 kB] 324s Get:107 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfwupd2 ppc64el 1.9.15-2 [136 kB] 324s Get:108 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev3 ppc64el 3.1.0-1build1 [55.2 kB] 324s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-utils3 ppc64el 3.1.0-1build1 [20.3 kB] 324s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-swap3 ppc64el 3.1.0-1build1 [8616 B] 324s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-part3 ppc64el 3.1.0-1build1 [17.5 kB] 324s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-nvme3 ppc64el 3.1.0-1build1 [20.1 kB] 324s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-mdraid3 ppc64el 3.1.0-1build1 [14.3 kB] 324s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-loop3 ppc64el 3.1.0-1build1 [7742 B] 324s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el e2fsprogs-l10n all 1.47.0-2.4~exp1ubuntu2 [5996 B] 324s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el logsave ppc64el 1.47.0-2.4~exp1ubuntu2 [22.9 kB] 324s Get:117 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libext2fs2t64 ppc64el 1.47.0-2.4~exp1ubuntu2 [270 kB] 324s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el e2fsprogs ppc64el 1.47.0-2.4~exp1ubuntu2 [663 kB] 324s Get:119 http://ftpmaster.internal/ubuntu noble/main ppc64el libreiserfscore0t64 ppc64el 1:3.6.27-7.1 [92.7 kB] 324s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el btrfs-progs ppc64el 6.6.3-1.1build1 [1352 kB] 324s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-fs3 ppc64el 3.1.0-1build1 [41.2 kB] 324s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblockdev-crypto3 ppc64el 3.1.0-1build1 [22.5 kB] 324s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bolt ppc64el 0.9.6-2build1 [171 kB] 324s Get:124 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-0t64 ppc64el 2.79.3-3ubuntu5 [1773 kB] 324s Get:125 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjcat1 ppc64el 0.2.0-2build2 [40.0 kB] 324s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libldap2 ppc64el 2.6.7+dfsg-1~exp1ubuntu6 [233 kB] 324s Get:127 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ubuntu-pro-client-l10n ppc64el 31.2.2 [19.4 kB] 324s Get:128 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ubuntu-pro-client ppc64el 31.2.2 [215 kB] 324s Get:129 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-apt ppc64el 2.7.7 [181 kB] 324s Get:130 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt-utils ppc64el 2.7.14 [226 kB] 324s Get:131 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapt-pkg6.0t64 ppc64el 2.7.14 [1063 kB] 324s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnettle8t64 ppc64el 3.9.1-2.2 [226 kB] 325s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libhogweed6t64 ppc64el 3.9.1-2.2 [208 kB] 325s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgnutls30t64 ppc64el 3.8.3-1.1ubuntu2 [1154 kB] 325s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apt ppc64el 2.7.14 [1401 kB] 325s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2build6 [64.4 kB] 325s Get:137 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblzma5 ppc64el 5.6.0-0.2 [156 kB] 325s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libblkid1 ppc64el 2.39.3-9ubuntu2 [155 kB] 325s Get:139 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el kmod ppc64el 31+20240202-2ubuntu4 [122 kB] 325s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkmod2 ppc64el 31+20240202-2ubuntu4 [64.4 kB] 325s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libselinux1 ppc64el 3.5-2ubuntu1 [101 kB] 325s Get:142 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libaudit-common all 1:3.1.2-2.1 [5674 B] 325s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcap-ng0 ppc64el 0.8.4-2build1 [16.2 kB] 325s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libaudit1 ppc64el 1:3.1.2-2.1 [52.8 kB] 325s Get:145 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam0g ppc64el 1.5.3-5ubuntu3 [75.7 kB] 325s Get:146 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-modules-bin ppc64el 1.5.3-5ubuntu3 [57.9 kB] 325s Get:147 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-modules ppc64el 1.5.3-5ubuntu3 [320 kB] 325s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpam-runtime all 1.5.3-5ubuntu3 [40.8 kB] 325s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-session-bus-common all 1.14.10-4ubuntu2 [80.3 kB] 325s Get:150 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-user-session ppc64el 1.14.10-4ubuntu2 [9960 B] 325s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libapparmor1 ppc64el 4.0.0-beta3-0ubuntu2 [55.0 kB] 325s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-system-bus-common all 1.14.10-4ubuntu2 [81.5 kB] 325s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-bin ppc64el 1.14.10-4ubuntu2 [48.1 kB] 325s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus ppc64el 1.14.10-4ubuntu2 [26.9 kB] 325s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dbus-daemon ppc64el 1.14.10-4ubuntu2 [136 kB] 325s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdbus-1-3 ppc64el 1.14.10-4ubuntu2 [244 kB] 325s Get:157 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.185-3ubuntu2 [182 kB] 325s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libuuid1 ppc64el 2.39.3-9ubuntu2 [39.3 kB] 325s Get:159 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcryptsetup12 ppc64el 2:2.7.0-1ubuntu2 [376 kB] 325s Get:160 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfdisk1 ppc64el 2.39.3-9ubuntu2 [171 kB] 325s Get:161 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libseccomp2 ppc64el 2.5.5-1ubuntu2 [62.5 kB] 325s Get:162 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el mount ppc64el 2.39.3-9ubuntu2 [125 kB] 325s Get:163 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmount1 ppc64el 2.39.3-9ubuntu2 [169 kB] 325s Get:164 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el zlib1g ppc64el 1:1.3.dfsg-3.1ubuntu1 [72.8 kB] 325s Get:165 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-minimal ppc64el 3.12.2-0ubuntu1 [27.1 kB] 325s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3 ppc64el 3.12.2-0ubuntu1 [24.1 kB] 325s Get:167 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libplymouth5 ppc64el 24.004.60-1ubuntu6 [166 kB] 325s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpng16-16t64 ppc64el 1.6.43-3 [242 kB] 325s Get:169 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbrotli1 ppc64el 1.1.0-2build1 [410 kB] 325s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfreetype6 ppc64el 2.13.2+dfsg-1build2 [545 kB] 325s Get:171 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsqlite3-0 ppc64el 3.45.1-1ubuntu1 [804 kB] 325s Get:172 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el pinentry-curses ppc64el 1.2.1-3ubuntu4 [38.7 kB] 325s Get:173 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-14-base ppc64el 14-20240315-1ubuntu1 [47.0 kB] 325s Get:174 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgcc-s1 ppc64el 14-20240315-1ubuntu1 [39.2 kB] 325s Get:175 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libstdc++6 ppc64el 14-20240315-1ubuntu1 [897 kB] 325s Get:176 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python-apt-common all 2.7.7 [19.8 kB] 325s Get:177 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsmartcols1 ppc64el 2.39.3-9ubuntu2 [79.0 kB] 325s Get:178 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el readline-common all 8.2-4 [56.4 kB] 325s Get:179 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bsdextrautils ppc64el 2.39.3-9ubuntu2 [78.6 kB] 325s Get:180 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el groff-base ppc64el 1.23.0-3build1 [1112 kB] 326s Get:181 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libpython3-stdlib ppc64el 3.12.2-0ubuntu1 [9798 B] 326s Get:182 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libfido2-1 ppc64el 1.14.0-1build1 [111 kB] 326s Get:183 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgssapi-krb5-2 ppc64el 1.20.1-6ubuntu1 [185 kB] 326s Get:184 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkrb5-3 ppc64el 1.20.1-6ubuntu1 [432 kB] 326s Get:185 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libkrb5support0 ppc64el 1.20.1-6ubuntu1 [38.5 kB] 326s Get:186 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libk5crypto3 ppc64el 1.20.1-6ubuntu1 [108 kB] 326s Get:187 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libcom-err2 ppc64el 1.47.0-2.4~exp1ubuntu2 [22.9 kB] 326s Get:188 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libproc2-0 ppc64el 2:4.0.4-4ubuntu2 [68.8 kB] 326s Get:189 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el procps ppc64el 2:4.0.4-4ubuntu2 [736 kB] 326s Get:190 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnghttp2-14 ppc64el 1.59.0-1build1 [89.0 kB] 326s Get:191 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dpkg ppc64el 1.22.6ubuntu5 [1343 kB] 326s Get:192 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el util-linux ppc64el 2.39.3-9ubuntu2 [1195 kB] 326s Get:193 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.3ubuntu2 [840 kB] 326s Get:194 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libbpf1 ppc64el 1:1.3.0-2build1 [216 kB] 326s Get:195 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el iproute2 ppc64el 6.1.0-1ubuntu5 [1384 kB] 326s Get:196 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libelf1t64 ppc64el 0.190-1.1build2 [69.3 kB] 326s Get:197 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dhcpcd-base ppc64el 1:10.0.6-1ubuntu2 [276 kB] 326s Get:198 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el file ppc64el 1:5.45-3 [22.7 kB] 326s Get:199 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmagic-mgc ppc64el 1:5.45-3 [307 kB] 326s Get:200 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libmagic1t64 ppc64el 1:5.45-3 [106 kB] 326s Get:201 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc-common all 1.3.4+ds-1.1 [8018 B] 326s Get:202 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el lsof ppc64el 4.95.0-1build2 [256 kB] 326s Get:203 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libnsl2 ppc64el 1.3.0-3build2 [48.9 kB] 327s Get:204 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtirpc3t64 ppc64el 1.3.4+ds-1.1 [102 kB] 327s Get:205 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el multipath-tools ppc64el 0.9.4-5ubuntu6 [341 kB] 327s Get:206 http://ftpmaster.internal/ubuntu noble/main ppc64el liburcu8t64 ppc64el 0.14.0-3.1 [73.6 kB] 327s Get:207 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-host ppc64el 1:9.18.24-0ubuntu3 [54.5 kB] 327s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-dnsutils ppc64el 1:9.18.24-0ubuntu3 [167 kB] 327s Get:209 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el bind9-libs ppc64el 1:9.18.24-0ubuntu3 [1436 kB] 327s Get:210 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libuv1t64 ppc64el 1.48.0-1.1 [117 kB] 327s Get:211 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el liblocale-gettext-perl ppc64el 1.07-6ubuntu4 [16.1 kB] 327s Get:212 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el uuid-runtime ppc64el 2.39.3-9ubuntu2 [33.8 kB] 327s Get:213 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdebconfclient0 ppc64el 0.271ubuntu2 [11.2 kB] 327s Get:214 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsemanage-common all 3.5-1build4 [10.1 kB] 327s Get:215 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsemanage2 ppc64el 3.5-1build4 [115 kB] 327s Get:216 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el install-info ppc64el 7.1-3build1 [64.5 kB] 327s Get:217 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gcc-13-base ppc64el 13.2.0-21ubuntu1 [48.3 kB] 327s Get:218 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libss2 ppc64el 1.47.0-2.4~exp1ubuntu2 [18.0 kB] 327s Get:219 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dmsetup ppc64el 2:1.02.185-3ubuntu2 [91.8 kB] 327s Get:220 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el eject ppc64el 2.39.3-9ubuntu2 [28.2 kB] 327s Get:221 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el krb5-locales all 1.20.1-6ubuntu1 [13.8 kB] 327s Get:222 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 327s Get:223 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libslang2 ppc64el 2.3.3-3build1 [501 kB] 327s Get:224 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtext-charwidth-perl ppc64el 0.04-11build2 [9506 B] 327s Get:225 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtext-iconv-perl ppc64el 1.7-8build2 [13.7 kB] 327s Get:226 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-yaml ppc64el 6.0.1-2build1 [123 kB] 327s Get:227 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-setuptools all 68.1.2-2ubuntu1 [396 kB] 327s Get:228 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-pkg-resources all 68.1.2-2ubuntu1 [168 kB] 327s Get:229 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el rsyslog ppc64el 8.2312.0-3ubuntu7 [629 kB] 327s Get:230 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el vim-tiny ppc64el 2:9.1.0016-1ubuntu6 [1042 kB] 328s Get:231 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el vim-common all 2:9.1.0016-1ubuntu6 [385 kB] 328s Get:232 http://ftpmaster.internal/ubuntu noble/main ppc64el xdg-user-dirs ppc64el 0.18-1 [20.0 kB] 328s Get:233 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el xxd ppc64el 2:9.1.0016-1ubuntu6 [63.7 kB] 328s Get:234 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el apparmor ppc64el 4.0.0-beta3-0ubuntu2 [747 kB] 328s Get:235 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ftp all 20230507-2build1 [4724 B] 328s Get:236 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el inetutils-telnet ppc64el 2:2.5-3ubuntu3 [115 kB] 328s Get:237 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el info ppc64el 7.1-3build1 [188 kB] 328s Get:238 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libusb-1.0-0 ppc64el 2:1.0.27-1 [64.0 kB] 328s Get:239 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxmuu1 ppc64el 2:1.1.3-3build1 [9488 B] 328s Get:240 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el lshw ppc64el 02.19.git.2021.06.19.996aaad9c7-2build2 [334 kB] 328s Get:241 http://ftpmaster.internal/ubuntu noble/main ppc64el manpages all 6.05.01-1 [1340 kB] 328s Get:242 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el mtr-tiny ppc64el 0.95-1.1build1 [62.8 kB] 328s Get:243 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el plymouth-theme-ubuntu-text ppc64el 24.004.60-1ubuntu6 [11.1 kB] 328s Get:244 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el plymouth ppc64el 24.004.60-1ubuntu6 [155 kB] 328s Get:245 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el telnet all 0.17+2.5-3ubuntu3 [3682 B] 328s Get:246 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el usb.ids all 2024.03.18-1 [223 kB] 328s Get:247 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el xz-utils ppc64el 5.6.0-0.2 [281 kB] 328s Get:248 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libllvm18 ppc64el 1:18.1.2-1ubuntu2 [28.9 MB] 330s Get:249 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libclang-cpp18 ppc64el 1:18.1.2-1ubuntu2 [14.6 MB] 330s Get:250 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libbpfcc ppc64el 0.29.1+ds-1ubuntu4 [707 kB] 330s Get:251 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el python3-bpfcc all 0.29.1+ds-1ubuntu4 [40.2 kB] 330s Get:252 http://ftpmaster.internal/ubuntu noble/main ppc64el ieee-data all 20220827.1 [2113 kB] 330s Get:253 http://ftpmaster.internal/ubuntu noble/main ppc64el python3-netaddr all 0.8.0-2ubuntu1 [319 kB] 330s Get:254 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el bpfcc-tools all 0.29.1+ds-1ubuntu4 [687 kB] 331s Get:255 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libclang1-18 ppc64el 1:18.1.2-1ubuntu2 [8725 kB] 331s Get:256 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdw1t64 ppc64el 0.190-1.1build2 [301 kB] 331s Get:257 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el bpftrace ppc64el 0.20.2-1ubuntu1 [1058 kB] 331s Get:258 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el cryptsetup-bin ppc64el 2:2.7.0-1ubuntu2 [227 kB] 331s Get:259 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el dpkg-dev all 1.22.6ubuntu5 [1074 kB] 331s Get:260 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libdpkg-perl all 1.22.6ubuntu5 [269 kB] 331s Get:261 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-mono all 2.37-8 [502 kB] 331s Get:262 http://ftpmaster.internal/ubuntu noble/main ppc64el fonts-dejavu-core all 2.37-8 [835 kB] 331s Get:263 http://ftpmaster.internal/ubuntu noble/main ppc64el fontconfig-config ppc64el 2.15.0-1.1ubuntu1 [37.4 kB] 331s Get:264 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libprotobuf-c1 ppc64el 1.4.1-1ubuntu3 [25.9 kB] 331s Get:265 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el gnupg-l10n all 2.4.4-2ubuntu15 [65.8 kB] 331s Get:266 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libibverbs1 ppc64el 50.0-2build1 [74.4 kB] 331s Get:267 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el ibverbs-providers ppc64el 50.0-2build1 [420 kB] 331s Get:268 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el jq ppc64el 1.7.1-3 [66.1 kB] 331s Get:269 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libjq1 ppc64el 1.7.1-3 [173 kB] 331s Get:270 http://ftpmaster.internal/ubuntu noble/main ppc64el libaio1t64 ppc64el 0.3.113-6 [8188 B] 331s Get:271 http://ftpmaster.internal/ubuntu noble/main ppc64el libatm1t64 ppc64el 1:2.5.1-5.1 [26.9 kB] 331s Get:272 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-dev-bin ppc64el 2.39-0ubuntu6 [21.3 kB] 331s Get:273 http://ftpmaster.internal/ubuntu noble/main ppc64el libfontconfig1 ppc64el 2.15.0-1.1ubuntu1 [190 kB] 331s Get:274 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg-turbo8 ppc64el 2.1.5-2ubuntu1 [212 kB] 331s Get:275 http://ftpmaster.internal/ubuntu noble/main ppc64el libjpeg8 ppc64el 8c-2ubuntu11 [2148 B] 331s Get:276 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB] 331s Get:277 http://ftpmaster.internal/ubuntu noble/main ppc64el libjbig0 ppc64el 2.1-6.1ubuntu1 [34.7 kB] 331s Get:278 http://ftpmaster.internal/ubuntu noble/main ppc64el liblerc4 ppc64el 4.0.0+ds-4ubuntu1 [266 kB] 331s Get:279 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libsharpyuv0 ppc64el 1.3.2-0.4build2 [28.8 kB] 331s Get:280 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libwebp7 ppc64el 1.3.2-0.4build2 [312 kB] 331s Get:281 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libtiff6 ppc64el 4.5.1+git230720-4ubuntu1 [274 kB] 331s Get:282 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libxpm4 ppc64el 1:3.5.17-1build1 [50.2 kB] 331s Get:283 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libgd3 ppc64el 2.3.3-9ubuntu3 [162 kB] 332s Get:284 http://ftpmaster.internal/ubuntu noble/main ppc64el libc-devtools ppc64el 2.39-0ubuntu6 [29.6 kB] 332s Get:285 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-libc-dev ppc64el 6.8.0-20.20 [1586 kB] 332s Get:286 http://ftpmaster.internal/ubuntu noble/main ppc64el libcrypt-dev ppc64el 1:4.4.36-4 [167 kB] 332s Get:287 http://ftpmaster.internal/ubuntu noble/main ppc64el rpcsvc-proto ppc64el 1.4.2-0ubuntu6 [82.3 kB] 332s Get:288 http://ftpmaster.internal/ubuntu noble/main ppc64el libc6-dev ppc64el 2.39-0ubuntu6 [2102 kB] 332s Get:289 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libevent-core-2.1-7 ppc64el 2.1.12-stable-9build1 [110 kB] 332s Get:290 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libftdi1-2 ppc64el 1.5-6build4 [32.5 kB] 332s Get:291 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libldap-common all 2.6.7+dfsg-1~exp1ubuntu6 [31.3 kB] 332s Get:292 http://ftpmaster.internal/ubuntu noble/main ppc64el libunwind8 ppc64el 1.6.2-3 [59.9 kB] 332s Get:293 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-modules-6.8.0-20-generic ppc64el 6.8.0-20.20 [31.3 MB] 334s Get:294 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-6.8.0-20-generic ppc64el 6.8.0-20.20 [63.9 MB] 340s Get:295 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-modules-extra-6.8.0-20-generic ppc64el 6.8.0-20.20 [103 MB] 352s Get:296 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-generic ppc64el 6.8.0-20.20+1 [1734 B] 352s Get:297 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-generic ppc64el 6.8.0-20.20+1 [9698 B] 352s Get:298 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-virtual ppc64el 6.8.0-20.20+1 [1686 B] 352s Get:299 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-image-virtual ppc64el 6.8.0-20.20+1 [9702 B] 352s Get:300 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-virtual ppc64el 6.8.0-20.20+1 [1648 B] 352s Get:301 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-6.8.0-20 all 6.8.0-20.20 [13.6 MB] 354s Get:302 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-6.8.0-20-generic ppc64el 6.8.0-20.20 [3728 kB] 354s Get:303 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-headers-generic ppc64el 6.8.0-20.20+1 [9612 B] 355s Get:304 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-common all 6.8.0-20.20 [437 kB] 355s Get:305 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-6.8.0-20 ppc64el 6.8.0-20.20 [2924 kB] 355s Get:306 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el linux-tools-6.8.0-20-generic ppc64el 6.8.0-20.20 [1730 B] 355s Get:307 http://ftpmaster.internal/ubuntu noble/main ppc64el manpages-dev all 6.05.01-1 [2018 kB] 356s Get:308 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-distutils all 3.12.2-3ubuntu1.1 [133 kB] 356s Get:309 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB] 356s Get:310 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-pyrsistent ppc64el 0.20.0-1build1 [60.4 kB] 356s Get:311 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el python3-typing-extensions all 4.10.0-1 [60.7 kB] 356s Get:312 http://ftpmaster.internal/ubuntu noble/main ppc64el ubuntu-kernel-accessories ppc64el 1.536build1 [10.5 kB] 356s Get:313 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el kpartx ppc64el 0.9.4-5ubuntu6 [34.4 kB] 356s Preconfiguring packages ... 357s Fetched 386 MB in 40s (9575 kB/s) 357s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 357s Preparing to unpack .../motd-news-config_13ubuntu8_all.deb ... 357s Unpacking motd-news-config (13ubuntu8) over (13ubuntu7) ... 357s Preparing to unpack .../base-files_13ubuntu8_ppc64el.deb ... 357s Unpacking base-files (13ubuntu8) over (13ubuntu7) ... 357s Setting up base-files (13ubuntu8) ... 358s motd-news.service is a disabled or a static unit not running, not starting it. 358s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 358s Preparing to unpack .../bash_5.2.21-2ubuntu3_ppc64el.deb ... 358s Unpacking bash (5.2.21-2ubuntu3) over (5.2.21-2ubuntu2) ... 358s Setting up bash (5.2.21-2ubuntu3) ... 358s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 358s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 358s Preparing to unpack .../bsdutils_1%3a2.39.3-9ubuntu2_ppc64el.deb ... 358s Unpacking bsdutils (1:2.39.3-9ubuntu2) over (1:2.39.3-6ubuntu2) ... 358s Setting up bsdutils (1:2.39.3-9ubuntu2) ... 358s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 358s Preparing to unpack .../coreutils_9.4-3ubuntu3_ppc64el.deb ... 358s Unpacking coreutils (9.4-3ubuntu3) over (9.4-2ubuntu4) ... 358s Setting up coreutils (9.4-3ubuntu3) ... 358s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70153 files and directories currently installed.) 358s Preparing to unpack .../00-libudisks2-0_2.10.1-6_ppc64el.deb ... 358s Unpacking libudisks2-0:ppc64el (2.10.1-6) over (2.10.1-1ubuntu2) ... 358s Preparing to unpack .../01-udisks2_2.10.1-6_ppc64el.deb ... 358s Unpacking udisks2 (2.10.1-6) over (2.10.1-1ubuntu2) ... 358s Preparing to unpack .../02-shared-mime-info_2.4-1build1_ppc64el.deb ... 358s Unpacking shared-mime-info (2.4-1build1) over (2.4-1) ... 358s Preparing to unpack .../03-gir1.2-girepository-2.0_1.79.1-1ubuntu6_ppc64el.deb ... 358s Unpacking gir1.2-girepository-2.0:ppc64el (1.79.1-1ubuntu6) over (1.79.1-1) ... 358s Preparing to unpack .../04-gir1.2-glib-2.0_2.79.3-3ubuntu5_ppc64el.deb ... 358s Unpacking gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 358s Preparing to unpack .../05-libgirepository-1.0-1_1.79.1-1ubuntu6_ppc64el.deb ... 358s Unpacking libgirepository-1.0-1:ppc64el (1.79.1-1ubuntu6) over (1.79.1-1) ... 358s Preparing to unpack .../06-python3-gi_3.47.0-3build1_ppc64el.deb ... 358s Unpacking python3-gi (3.47.0-3build1) over (3.47.0-3) ... 358s Preparing to unpack .../07-python3-dbus_1.3.2-5build2_ppc64el.deb ... 358s Unpacking python3-dbus (1.3.2-5build2) over (1.3.2-5build1) ... 358s Selecting previously unselected package libnetplan1:ppc64el. 358s Preparing to unpack .../08-libnetplan1_1.0-1_ppc64el.deb ... 358s Unpacking libnetplan1:ppc64el (1.0-1) ... 358s Preparing to unpack .../09-python3-netplan_1.0-1_ppc64el.deb ... 358s Unpacking python3-netplan (1.0-1) over (0.107.1-3) ... 358s Preparing to unpack .../10-netplan-generator_1.0-1_ppc64el.deb ... 358s Adding 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 358s Unpacking netplan-generator (1.0-1) over (0.107.1-3) ... 359s Preparing to unpack .../11-initramfs-tools-bin_0.142ubuntu23_ppc64el.deb ... 359s Unpacking initramfs-tools-bin (0.142ubuntu23) over (0.142ubuntu20) ... 359s Preparing to unpack .../12-initramfs-tools-core_0.142ubuntu23_all.deb ... 359s Unpacking initramfs-tools-core (0.142ubuntu23) over (0.142ubuntu20) ... 359s Preparing to unpack .../13-initramfs-tools_0.142ubuntu23_all.deb ... 359s Unpacking initramfs-tools (0.142ubuntu23) over (0.142ubuntu20) ... 359s Preparing to unpack .../14-netplan.io_1.0-1_ppc64el.deb ... 359s Unpacking netplan.io (1.0-1) over (0.107.1-3) ... 359s Preparing to unpack .../15-libxmlb2_0.3.15-1build1_ppc64el.deb ... 359s Unpacking libxmlb2:ppc64el (0.3.15-1build1) over (0.3.15-1) ... 359s dpkg: libgpgme11:ppc64el: dependency problems, but removing anyway as you requested: 359s libvolume-key1:ppc64el depends on libgpgme11 (>= 1.4.1). 359s libjcat1:ppc64el depends on libgpgme11 (>= 1.2.0). 359s 359s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 359s Removing libgpgme11:ppc64el (1.18.0-4ubuntu1) ... 359s Selecting previously unselected package libgpgme11t64:ppc64el. 359s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70151 files and directories currently installed.) 359s Preparing to unpack .../00-libgpgme11t64_1.18.0-4.1ubuntu3_ppc64el.deb ... 359s Unpacking libgpgme11t64:ppc64el (1.18.0-4.1ubuntu3) ... 359s Preparing to unpack .../01-libvolume-key1_0.3.12-7build1_ppc64el.deb ... 359s Unpacking libvolume-key1:ppc64el (0.3.12-7build1) over (0.3.12-5build2) ... 359s Preparing to unpack .../02-libqrtr-glib0_1.2.2-1ubuntu3_ppc64el.deb ... 359s Unpacking libqrtr-glib0:ppc64el (1.2.2-1ubuntu3) over (1.2.2-1ubuntu2) ... 359s Preparing to unpack .../03-libqmi-glib5_1.35.2-0ubuntu1_ppc64el.deb ... 359s Unpacking libqmi-glib5:ppc64el (1.35.2-0ubuntu1) over (1.34.0-2) ... 359s Preparing to unpack .../04-libqmi-proxy_1.35.2-0ubuntu1_ppc64el.deb ... 359s Unpacking libqmi-proxy (1.35.2-0ubuntu1) over (1.34.0-2) ... 359s Preparing to unpack .../05-libpolkit-agent-1-0_124-1ubuntu1_ppc64el.deb ... 359s Unpacking libpolkit-agent-1-0:ppc64el (124-1ubuntu1) over (124-1) ... 359s Preparing to unpack .../06-libpolkit-gobject-1-0_124-1ubuntu1_ppc64el.deb ... 359s Unpacking libpolkit-gobject-1-0:ppc64el (124-1ubuntu1) over (124-1) ... 359s Preparing to unpack .../07-libmm-glib0_1.23.4-0ubuntu1_ppc64el.deb ... 359s Unpacking libmm-glib0:ppc64el (1.23.4-0ubuntu1) over (1.22.0-3) ... 359s Preparing to unpack .../08-libmbim-glib4_1.31.2-0ubuntu2_ppc64el.deb ... 359s Unpacking libmbim-glib4:ppc64el (1.31.2-0ubuntu2) over (1.30.0-1) ... 359s Preparing to unpack .../09-libmbim-proxy_1.31.2-0ubuntu2_ppc64el.deb ... 359s Unpacking libmbim-proxy (1.31.2-0ubuntu2) over (1.30.0-1) ... 359s Preparing to unpack .../10-libjson-glib-1.0-common_1.8.0-2build1_all.deb ... 359s Unpacking libjson-glib-1.0-common (1.8.0-2build1) over (1.8.0-2) ... 359s Preparing to unpack .../11-libjson-glib-1.0-0_1.8.0-2build1_ppc64el.deb ... 359s Unpacking libjson-glib-1.0-0:ppc64el (1.8.0-2build1) over (1.8.0-2) ... 359s Preparing to unpack .../12-libgusb2_0.4.8-1build1_ppc64el.deb ... 359s Unpacking libgusb2:ppc64el (0.4.8-1build1) over (0.4.8-1) ... 359s Preparing to unpack .../13-libgudev-1.0-0_1%3a238-3ubuntu2_ppc64el.deb ... 359s Unpacking libgudev-1.0-0:ppc64el (1:238-3ubuntu2) over (1:238-3) ... 359s Preparing to unpack .../14-tnftp_20230507-2build1_ppc64el.deb ... 359s Unpacking tnftp (20230507-2build1) over (20230507-2) ... 359s Preparing to unpack .../15-tcpdump_4.99.4-3ubuntu2_ppc64el.deb ... 359s Unpacking tcpdump (4.99.4-3ubuntu2) over (4.99.4-3ubuntu1) ... 359s Preparing to unpack .../16-libsystemd0_255.4-1ubuntu5_ppc64el.deb ... 359s Unpacking libsystemd0:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 359s Setting up libsystemd0:ppc64el (255.4-1ubuntu5) ... 359s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 359s Preparing to unpack .../systemd-dev_255.4-1ubuntu5_all.deb ... 359s Unpacking systemd-dev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 359s Preparing to unpack .../libnss-systemd_255.4-1ubuntu5_ppc64el.deb ... 359s Unpacking libnss-systemd:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 359s Preparing to unpack .../libudev1_255.4-1ubuntu5_ppc64el.deb ... 359s Unpacking libudev1:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 359s Setting up libudev1:ppc64el (255.4-1ubuntu5) ... 359s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested: 359s wget depends on libssl3 (>= 3.0.0). 359s systemd-resolved depends on libssl3 (>= 3.0.0). 359s systemd depends on libssl3 (>= 3.0.0). 359s sudo depends on libssl3 (>= 3.0.0). 359s rsync depends on libssl3 (>= 3.0.0). 359s python3-cryptography depends on libssl3 (>= 3.0.0). 359s openssl depends on libssl3 (>= 3.0.9). 359s openssh-server depends on libssl3 (>= 3.0.10). 359s openssh-client depends on libssl3 (>= 3.0.10). 359s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 359s libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0). 359s libssh-4:ppc64el depends on libssl3 (>= 3.0.0). 359s libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0). 359s libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0). 359s libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0). 359s libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0). 359s libnvme1 depends on libssl3 (>= 3.0.0). 359s libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0). 359s libkmod2:ppc64el depends on libssl3 (>= 3.0.0). 359s libfido2-1:ppc64el depends on libssl3 (>= 3.0.0). 359s libcurl4:ppc64el depends on libssl3 (>= 3.0.0). 359s libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0). 359s kmod depends on libssl3 (>= 3.0.0). 359s dhcpcd-base depends on libssl3 (>= 3.0.0). 359s coreutils depends on libssl3 (>= 3.0.0). 359s bind9-libs:ppc64el depends on libssl3 (>= 3.0.0). 359s 359s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70158 files and directories currently installed.) 359s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ... 359s Selecting previously unselected package libssl3t64:ppc64el. 359s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70147 files and directories currently installed.) 359s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ... 359s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 359s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ... 360s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 360s Preparing to unpack .../systemd_255.4-1ubuntu5_ppc64el.deb ... 360s Unpacking systemd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 360s Preparing to unpack .../udev_255.4-1ubuntu5_ppc64el.deb ... 360s Unpacking udev (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 360s Preparing to unpack .../libsystemd-shared_255.4-1ubuntu5_ppc64el.deb ... 360s Unpacking libsystemd-shared:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 360s Setting up libsystemd-shared:ppc64el (255.4-1ubuntu5) ... 360s Setting up systemd-dev (255.4-1ubuntu5) ... 360s Setting up systemd (255.4-1ubuntu5) ... 361s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 361s Preparing to unpack .../00-systemd-sysv_255.4-1ubuntu5_ppc64el.deb ... 361s Unpacking systemd-sysv (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 361s Preparing to unpack .../01-libpam-systemd_255.4-1ubuntu5_ppc64el.deb ... 361s Unpacking libpam-systemd:ppc64el (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 361s Preparing to unpack .../02-systemd-timesyncd_255.4-1ubuntu5_ppc64el.deb ... 361s Unpacking systemd-timesyncd (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 361s Preparing to unpack .../03-systemd-resolved_255.4-1ubuntu5_ppc64el.deb ... 361s Unpacking systemd-resolved (255.4-1ubuntu5) over (255.2-3ubuntu2) ... 361s Preparing to unpack .../04-sudo_1.9.15p5-3ubuntu3_ppc64el.deb ... 361s Unpacking sudo (1.9.15p5-3ubuntu3) over (1.9.15p5-3ubuntu1) ... 361s Preparing to unpack .../05-rsync_3.2.7-1build1_ppc64el.deb ... 361s Unpacking rsync (3.2.7-1build1) over (3.2.7-1) ... 361s Preparing to unpack .../06-python3-cryptography_41.0.7-4build2_ppc64el.deb ... 361s Unpacking python3-cryptography (41.0.7-4build2) over (41.0.7-3) ... 361s Preparing to unpack .../07-openssl_3.0.13-0ubuntu2_ppc64el.deb ... 361s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 361s Preparing to unpack .../08-openssh-sftp-server_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 361s Unpacking openssh-sftp-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 361s Preparing to unpack .../09-openssh-client_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 361s Unpacking openssh-client (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 361s Preparing to unpack .../10-openssh-server_1%3a9.6p1-3ubuntu11_ppc64el.deb ... 362s Unpacking openssh-server (1:9.6p1-3ubuntu11) over (1:9.6p1-3ubuntu2) ... 362s Preparing to unpack .../11-libssh-4_0.10.6-2build1_ppc64el.deb ... 362s Unpacking libssh-4:ppc64el (0.10.6-2build1) over (0.10.6-2) ... 362s Preparing to unpack .../12-libsasl2-modules_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ... 362s Unpacking libsasl2-modules:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 362s Preparing to unpack .../13-python3.12_3.12.2-4build3_ppc64el.deb ... 362s Unpacking python3.12 (3.12.2-4build3) over (3.12.2-1) ... 362s Preparing to unpack .../14-python3.12-minimal_3.12.2-4build3_ppc64el.deb ... 362s Unpacking python3.12-minimal (3.12.2-4build3) over (3.12.2-1) ... 362s Preparing to unpack .../15-libpython3.12-minimal_3.12.2-4build3_ppc64el.deb ... 362s Unpacking libpython3.12-minimal:ppc64el (3.12.2-4build3) over (3.12.2-1) ... 362s Preparing to unpack .../16-grub-ieee1275_2.12-1ubuntu5_ppc64el.deb ... 362s Unpacking grub-ieee1275 (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 362s Preparing to unpack .../17-grub2-common_2.12-1ubuntu5_ppc64el.deb ... 362s Unpacking grub2-common (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 362s Preparing to unpack .../18-grub-common_2.12-1ubuntu5_ppc64el.deb ... 362s Unpacking grub-common (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 362s Preparing to unpack .../19-grub-ieee1275-bin_2.12-1ubuntu5_ppc64el.deb ... 362s Unpacking grub-ieee1275-bin (2.12-1ubuntu5) over (2.12-1ubuntu4) ... 362s dpkg: libparted2:ppc64el: dependency problems, but removing anyway as you requested: 362s parted depends on libparted2 (= 3.6-3). 362s 362s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 362s Removing libparted2:ppc64el (3.6-3) ... 362s Selecting previously unselected package libparted2t64:ppc64el. 362s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70154 files and directories currently installed.) 362s Preparing to unpack .../0-libparted2t64_3.6-3.1build2_ppc64el.deb ... 362s Unpacking libparted2t64:ppc64el (3.6-3.1build2) ... 362s Preparing to unpack .../1-parted_3.6-3.1build2_ppc64el.deb ... 362s Unpacking parted (3.6-3.1build2) over (3.6-3) ... 363s Preparing to unpack .../2-python3.11_3.11.8-1build4_ppc64el.deb ... 363s Unpacking python3.11 (3.11.8-1build4) over (3.11.8-1) ... 363s Preparing to unpack .../3-python3.11-minimal_3.11.8-1build4_ppc64el.deb ... 363s Unpacking python3.11-minimal (3.11.8-1build4) over (3.11.8-1) ... 363s Preparing to unpack .../4-libpython3.11-minimal_3.11.8-1build4_ppc64el.deb ... 363s Unpacking libpython3.11-minimal:ppc64el (3.11.8-1build4) over (3.11.8-1) ... 363s Preparing to unpack .../5-libpython3.11-stdlib_3.11.8-1build4_ppc64el.deb ... 363s Unpacking libpython3.11-stdlib:ppc64el (3.11.8-1build4) over (3.11.8-1) ... 363s Preparing to unpack .../6-gnupg-utils_2.4.4-2ubuntu15_ppc64el.deb ... 363s Unpacking gnupg-utils (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 363s Preparing to unpack .../7-gpg-agent_2.4.4-2ubuntu15_ppc64el.deb ... 363s Unpacking gpg-agent (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 363s Preparing to unpack .../8-gpg-wks-client_2.4.4-2ubuntu15_ppc64el.deb ... 363s Unpacking gpg-wks-client (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 363s Preparing to unpack .../9-gpg_2.4.4-2ubuntu15_ppc64el.deb ... 363s Unpacking gpg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 363s dpkg: libnpth0:ppc64el: dependency problems, but removing anyway as you requested: 363s keyboxd depends on libnpth0 (>= 0.90). 363s gpgv depends on libnpth0 (>= 0.90). 363s gpgsm depends on libnpth0 (>= 0.90). 363s dirmngr depends on libnpth0 (>= 0.90). 363s 363s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70159 files and directories currently installed.) 363s Removing libnpth0:ppc64el (1.6-3build2) ... 363s Selecting previously unselected package libnpth0t64:ppc64el. 363s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70154 files and directories currently installed.) 363s Preparing to unpack .../libnpth0t64_1.6-3.1_ppc64el.deb ... 363s Unpacking libnpth0t64:ppc64el (1.6-3.1) ... 363s Setting up libnpth0t64:ppc64el (1.6-3.1) ... 363s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 363s Preparing to unpack .../gpgv_2.4.4-2ubuntu15_ppc64el.deb ... 363s Unpacking gpgv (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 363s Setting up gpgv (2.4.4-2ubuntu15) ... 363s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 363s Preparing to unpack .../dirmngr_2.4.4-2ubuntu15_ppc64el.deb ... 363s Unpacking dirmngr (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 363s Preparing to unpack .../gnupg_2.4.4-2ubuntu15_all.deb ... 363s Unpacking gnupg (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 363s Preparing to unpack .../keyboxd_2.4.4-2ubuntu15_ppc64el.deb ... 363s Unpacking keyboxd (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 363s Preparing to unpack .../gpgconf_2.4.4-2ubuntu15_ppc64el.deb ... 363s Unpacking gpgconf (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 364s Preparing to unpack .../gpgsm_2.4.4-2ubuntu15_ppc64el.deb ... 364s Unpacking gpgsm (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 364s dpkg: libreadline8:ppc64el: dependency problems, but removing anyway as you requested: 364s libpython3.12-stdlib:ppc64el depends on libreadline8 (>= 7.0~beta). 364s gawk depends on libreadline8 (>= 6.0). 364s fdisk depends on libreadline8 (>= 6.0). 364s bc depends on libreadline8 (>= 6.0). 364s 364s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70160 files and directories currently installed.) 364s Removing libreadline8:ppc64el (8.2-3) ... 364s Selecting previously unselected package libreadline8t64:ppc64el. 364s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70148 files and directories currently installed.) 364s Preparing to unpack .../libreadline8t64_8.2-4_ppc64el.deb ... 364s Adding 'diversion of /lib/powerpc64le-linux-gnu/libhistory.so.8 to /lib/powerpc64le-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 364s Adding 'diversion of /lib/powerpc64le-linux-gnu/libhistory.so.8.2 to /lib/powerpc64le-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 364s Adding 'diversion of /lib/powerpc64le-linux-gnu/libreadline.so.8 to /lib/powerpc64le-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 364s Adding 'diversion of /lib/powerpc64le-linux-gnu/libreadline.so.8.2 to /lib/powerpc64le-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 364s Unpacking libreadline8t64:ppc64el (8.2-4) ... 364s Setting up libreadline8t64:ppc64el (8.2-4) ... 364s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 364s Preparing to unpack .../gawk_1%3a5.2.1-2build2_ppc64el.deb ... 364s Unpacking gawk (1:5.2.1-2build2) over (1:5.2.1-2) ... 364s Preparing to unpack .../fdisk_2.39.3-9ubuntu2_ppc64el.deb ... 364s Unpacking fdisk (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 364s Preparing to unpack .../bc_1.07.1-3ubuntu2_ppc64el.deb ... 364s Unpacking bc (1.07.1-3ubuntu2) over (1.07.1-3build1) ... 364s Preparing to unpack .../libpython3.12-stdlib_3.12.2-4build3_ppc64el.deb ... 364s Unpacking libpython3.12-stdlib:ppc64el (3.12.2-4build3) over (3.12.2-1) ... 364s Preparing to unpack .../perl-base_5.38.2-3.2_ppc64el.deb ... 364s Unpacking perl-base (5.38.2-3.2) over (5.38.2-3) ... 364s Setting up perl-base (5.38.2-3.2) ... 364s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70166 files and directories currently installed.) 364s Preparing to unpack .../perl-modules-5.38_5.38.2-3.2_all.deb ... 364s Unpacking perl-modules-5.38 (5.38.2-3.2) over (5.38.2-3) ... 365s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_ppc64el.deb ... 365s Unpacking python3-gdbm:ppc64el (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 365s Preparing to unpack .../man-db_2.12.0-3build4_ppc64el.deb ... 365s Unpacking man-db (2.12.0-3build4) over (2.12.0-3) ... 365s dpkg: libgdbm-compat4:ppc64el: dependency problems, but removing anyway as you requested: 365s libperl5.38:ppc64el depends on libgdbm-compat4 (>= 1.18-3). 365s 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70166 files and directories currently installed.) 365s Removing libgdbm-compat4:ppc64el (1.23-5) ... 365s dpkg: libgdbm6:ppc64el: dependency problems, but removing anyway as you requested: 365s libperl5.38:ppc64el depends on libgdbm6 (>= 1.21). 365s 365s Removing libgdbm6:ppc64el (1.23-5) ... 365s Selecting previously unselected package libgdbm6t64:ppc64el. 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70156 files and directories currently installed.) 365s Preparing to unpack .../libgdbm6t64_1.23-5.1_ppc64el.deb ... 365s Unpacking libgdbm6t64:ppc64el (1.23-5.1) ... 365s Selecting previously unselected package libgdbm-compat4t64:ppc64el. 365s Preparing to unpack .../libgdbm-compat4t64_1.23-5.1_ppc64el.deb ... 365s Unpacking libgdbm-compat4t64:ppc64el (1.23-5.1) ... 365s dpkg: libperl5.38:ppc64el: dependency problems, but removing anyway as you requested: 365s perl depends on libperl5.38 (= 5.38.2-3). 365s 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 365s Removing libperl5.38:ppc64el (5.38.2-3) ... 365s Selecting previously unselected package libperl5.38t64:ppc64el. 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 69645 files and directories currently installed.) 365s Preparing to unpack .../libperl5.38t64_5.38.2-3.2_ppc64el.deb ... 365s Unpacking libperl5.38t64:ppc64el (5.38.2-3.2) ... 366s Preparing to unpack .../perl_5.38.2-3.2_ppc64el.deb ... 366s Unpacking perl (5.38.2-3.2) over (5.38.2-3) ... 366s dpkg: libdb5.3:ppc64el: dependency problems, but removing anyway as you requested: 366s libsasl2-modules-db:ppc64el depends on libdb5.3. 366s libpam-modules:ppc64el depends on libdb5.3. 366s iproute2 depends on libdb5.3. 366s apt-utils depends on libdb5.3. 366s 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 366s Removing libdb5.3:ppc64el (5.3.28+dfsg2-4) ... 366s Selecting previously unselected package libdb5.3t64:ppc64el. 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70162 files and directories currently installed.) 366s Preparing to unpack .../libdb5.3t64_5.3.28+dfsg2-6_ppc64el.deb ... 366s Unpacking libdb5.3t64:ppc64el (5.3.28+dfsg2-6) ... 366s Preparing to unpack .../libsasl2-modules-db_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ... 366s Unpacking libsasl2-modules-db:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 366s Preparing to unpack .../libsasl2-2_2.1.28+dfsg1-5ubuntu1_ppc64el.deb ... 366s Unpacking libsasl2-2:ppc64el (2.1.28+dfsg1-5ubuntu1) over (2.1.28+dfsg1-4) ... 366s dpkg: libnvme1: dependency problems, but removing anyway as you requested: 366s libblockdev-nvme3:ppc64el depends on libnvme1 (>= 1.7.1). 366s 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70168 files and directories currently installed.) 366s Removing libnvme1 (1.8-2) ... 366s Selecting previously unselected package libnvme1t64. 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70161 files and directories currently installed.) 366s Preparing to unpack .../libnvme1t64_1.8-3_ppc64el.deb ... 366s Unpacking libnvme1t64 (1.8-3) ... 366s Preparing to unpack .../wget_1.21.4-1ubuntu2_ppc64el.deb ... 366s Unpacking wget (1.21.4-1ubuntu2) over (1.21.4-1ubuntu1) ... 366s dpkg: libcurl4:ppc64el: dependency problems, but removing anyway as you requested: 366s curl depends on libcurl4 (= 8.5.0-2ubuntu2). 366s 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70169 files and directories currently installed.) 366s Removing libcurl4:ppc64el (8.5.0-2ubuntu2) ... 366s Selecting previously unselected package libcurl4t64:ppc64el. 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70164 files and directories currently installed.) 366s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu8_ppc64el.deb ... 366s Unpacking libcurl4t64:ppc64el (8.5.0-2ubuntu8) ... 366s Preparing to unpack .../curl_8.5.0-2ubuntu8_ppc64el.deb ... 366s Unpacking curl (8.5.0-2ubuntu8) over (8.5.0-2ubuntu2) ... 366s dpkg: libpsl5:ppc64el: dependency problems, but removing anyway as you requested: 366s libcurl3-gnutls:ppc64el depends on libpsl5 (>= 0.16.0). 366s 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70170 files and directories currently installed.) 366s Removing libpsl5:ppc64el (0.21.2-1build1) ... 366s Selecting previously unselected package libpsl5t64:ppc64el. 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 366s Preparing to unpack .../libpsl5t64_0.21.2-1.1_ppc64el.deb ... 366s Unpacking libpsl5t64:ppc64el (0.21.2-1.1) ... 366s dpkg: libarchive13:ppc64el: dependency problems, but removing anyway as you requested: 366s fwupd depends on libarchive13 (>= 3.2.1). 366s 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70171 files and directories currently installed.) 366s Removing libarchive13:ppc64el (3.7.2-1ubuntu2) ... 366s Selecting previously unselected package libarchive13t64:ppc64el. 366s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 366s Preparing to unpack .../libarchive13t64_3.7.2-1.1ubuntu2_ppc64el.deb ... 366s Unpacking libarchive13t64:ppc64el (3.7.2-1.1ubuntu2) ... 366s Preparing to unpack .../fwupd_1.9.15-2_ppc64el.deb ... 366s Unpacking fwupd (1.9.15-2) over (1.9.14-1) ... 367s dpkg: libcurl3-gnutls:ppc64el: dependency problems, but removing anyway as you requested: 367s libfwupd2:ppc64el depends on libcurl3-gnutls (>= 7.63.0). 367s 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70172 files and directories currently installed.) 367s Removing libcurl3-gnutls:ppc64el (8.5.0-2ubuntu2) ... 367s Selecting previously unselected package libcurl3t64-gnutls:ppc64el. 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 367s Preparing to unpack .../00-libcurl3t64-gnutls_8.5.0-2ubuntu8_ppc64el.deb ... 367s Unpacking libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu8) ... 367s Preparing to unpack .../01-libfwupd2_1.9.15-2_ppc64el.deb ... 367s Unpacking libfwupd2:ppc64el (1.9.15-2) over (1.9.14-1) ... 367s Preparing to unpack .../02-libblockdev3_3.1.0-1build1_ppc64el.deb ... 367s Unpacking libblockdev3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 367s Preparing to unpack .../03-libblockdev-utils3_3.1.0-1build1_ppc64el.deb ... 367s Unpacking libblockdev-utils3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 367s Preparing to unpack .../04-libblockdev-swap3_3.1.0-1build1_ppc64el.deb ... 367s Unpacking libblockdev-swap3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 367s Preparing to unpack .../05-libblockdev-part3_3.1.0-1build1_ppc64el.deb ... 367s Unpacking libblockdev-part3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 367s Preparing to unpack .../06-libblockdev-nvme3_3.1.0-1build1_ppc64el.deb ... 367s Unpacking libblockdev-nvme3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 367s Preparing to unpack .../07-libblockdev-mdraid3_3.1.0-1build1_ppc64el.deb ... 367s Unpacking libblockdev-mdraid3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 367s Preparing to unpack .../08-libblockdev-loop3_3.1.0-1build1_ppc64el.deb ... 367s Unpacking libblockdev-loop3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 367s Preparing to unpack .../09-e2fsprogs-l10n_1.47.0-2.4~exp1ubuntu2_all.deb ... 367s Unpacking e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 367s Preparing to unpack .../10-logsave_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 367s Unpacking logsave (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 367s dpkg: libext2fs2:ppc64el: dependency problems, but removing anyway as you requested: 367s libblockdev-fs3:ppc64el depends on libext2fs2 (>= 1.42.11). 367s e2fsprogs depends on libext2fs2 (= 1.47.0-2ubuntu1). 367s btrfs-progs depends on libext2fs2 (>= 1.42). 367s 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70172 files and directories currently installed.) 367s Removing libext2fs2:ppc64el (1.47.0-2ubuntu1) ... 367s Selecting previously unselected package libext2fs2t64:ppc64el. 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70165 files and directories currently installed.) 367s Preparing to unpack .../libext2fs2t64_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 367s Adding 'diversion of /lib/powerpc64le-linux-gnu/libe2p.so.2 to /lib/powerpc64le-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' 367s Adding 'diversion of /lib/powerpc64le-linux-gnu/libe2p.so.2.3 to /lib/powerpc64le-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' 367s Adding 'diversion of /lib/powerpc64le-linux-gnu/libext2fs.so.2 to /lib/powerpc64le-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' 367s Adding 'diversion of /lib/powerpc64le-linux-gnu/libext2fs.so.2.4 to /lib/powerpc64le-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' 367s Unpacking libext2fs2t64:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 367s Setting up libext2fs2t64:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70181 files and directories currently installed.) 367s Preparing to unpack .../e2fsprogs_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 367s Unpacking e2fsprogs (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 367s dpkg: libreiserfscore0: dependency problems, but removing anyway as you requested: 367s btrfs-progs depends on libreiserfscore0 (>= 1:3.6.27). 367s 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70181 files and directories currently installed.) 367s Removing libreiserfscore0 (1:3.6.27-7) ... 367s Selecting previously unselected package libreiserfscore0t64. 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70176 files and directories currently installed.) 367s Preparing to unpack .../libreiserfscore0t64_1%3a3.6.27-7.1_ppc64el.deb ... 367s Unpacking libreiserfscore0t64 (1:3.6.27-7.1) ... 367s Preparing to unpack .../btrfs-progs_6.6.3-1.1build1_ppc64el.deb ... 367s Unpacking btrfs-progs (6.6.3-1.1build1) over (6.6.3-1.1) ... 367s Preparing to unpack .../libblockdev-fs3_3.1.0-1build1_ppc64el.deb ... 367s Unpacking libblockdev-fs3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 367s Preparing to unpack .../libblockdev-crypto3_3.1.0-1build1_ppc64el.deb ... 367s Unpacking libblockdev-crypto3:ppc64el (3.1.0-1build1) over (3.1.0-1) ... 367s Preparing to unpack .../bolt_0.9.6-2build1_ppc64el.deb ... 367s Unpacking bolt (0.9.6-2build1) over (0.9.6-2) ... 367s dpkg: libglib2.0-0:ppc64el: dependency problems, but removing anyway as you requested: 367s libnetplan0:ppc64el depends on libglib2.0-0 (>= 2.75.3). 367s libjcat1:ppc64el depends on libglib2.0-0 (>= 2.75.3). 367s 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70182 files and directories currently installed.) 367s Removing libglib2.0-0:ppc64el (2.79.2-1~ubuntu1) ... 367s Selecting previously unselected package libglib2.0-0t64:ppc64el. 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70157 files and directories currently installed.) 367s Preparing to unpack .../0-libglib2.0-0t64_2.79.3-3ubuntu5_ppc64el.deb ... 367s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 367s removed '/var/lib/dpkg/info/libglib2.0-0:ppc64el.postrm' 367s Unpacking libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 368s Preparing to unpack .../1-libjcat1_0.2.0-2build2_ppc64el.deb ... 368s Unpacking libjcat1:ppc64el (0.2.0-2build2) over (0.2.0-2) ... 368s Preparing to unpack .../2-libldap2_2.6.7+dfsg-1~exp1ubuntu6_ppc64el.deb ... 368s Unpacking libldap2:ppc64el (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 368s Preparing to unpack .../3-ubuntu-pro-client-l10n_31.2.2_ppc64el.deb ... 368s Unpacking ubuntu-pro-client-l10n (31.2.2) over (31.1) ... 368s Preparing to unpack .../4-ubuntu-pro-client_31.2.2_ppc64el.deb ... 368s Unpacking ubuntu-pro-client (31.2.2) over (31.1) ... 368s Preparing to unpack .../5-python3-apt_2.7.7_ppc64el.deb ... 368s Unpacking python3-apt (2.7.7) over (2.7.6) ... 368s Preparing to unpack .../6-apt-utils_2.7.14_ppc64el.deb ... 368s Unpacking apt-utils (2.7.14) over (2.7.12) ... 368s dpkg: libapt-pkg6.0:ppc64el: dependency problems, but removing anyway as you requested: 368s apt depends on libapt-pkg6.0 (>= 2.7.12). 368s 368s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70180 files and directories currently installed.) 368s Removing libapt-pkg6.0:ppc64el (2.7.12) ... 368s dpkg: libnettle8:ppc64el: dependency problems, but removing anyway as you requested: 368s librtmp1:ppc64el depends on libnettle8. 368s libhogweed6:ppc64el depends on libnettle8. 368s libgnutls30:ppc64el depends on libnettle8 (>= 3.9~). 368s 368s Removing libnettle8:ppc64el (3.9.1-2) ... 368s Selecting previously unselected package libapt-pkg6.0t64:ppc64el. 368s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70124 files and directories currently installed.) 368s Preparing to unpack .../libapt-pkg6.0t64_2.7.14_ppc64el.deb ... 368s Unpacking libapt-pkg6.0t64:ppc64el (2.7.14) ... 368s Setting up libapt-pkg6.0t64:ppc64el (2.7.14) ... 368s Selecting previously unselected package libnettle8t64:ppc64el. 368s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70174 files and directories currently installed.) 368s Preparing to unpack .../libnettle8t64_3.9.1-2.2_ppc64el.deb ... 368s Unpacking libnettle8t64:ppc64el (3.9.1-2.2) ... 368s Setting up libnettle8t64:ppc64el (3.9.1-2.2) ... 368s dpkg: libhogweed6:ppc64el: dependency problems, but removing anyway as you requested: 368s librtmp1:ppc64el depends on libhogweed6. 368s libgnutls30:ppc64el depends on libhogweed6 (>= 3.6). 368s 369s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70182 files and directories currently installed.) 369s Removing libhogweed6:ppc64el (3.9.1-2) ... 369s Selecting previously unselected package libhogweed6t64:ppc64el. 369s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70177 files and directories currently installed.) 369s Preparing to unpack .../libhogweed6t64_3.9.1-2.2_ppc64el.deb ... 369s Unpacking libhogweed6t64:ppc64el (3.9.1-2.2) ... 369s Setting up libhogweed6t64:ppc64el (3.9.1-2.2) ... 369s dpkg: libgnutls30:ppc64el: dependency problems, but removing anyway as you requested: 369s librtmp1:ppc64el depends on libgnutls30 (>= 3.7.2). 369s apt depends on libgnutls30 (>= 3.8.1). 369s 369s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70183 files and directories currently installed.) 369s Removing libgnutls30:ppc64el (3.8.3-1ubuntu1) ... 369s Selecting previously unselected package libgnutls30t64:ppc64el. 369s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70174 files and directories currently installed.) 369s Preparing to unpack .../libgnutls30t64_3.8.3-1.1ubuntu2_ppc64el.deb ... 369s Unpacking libgnutls30t64:ppc64el (3.8.3-1.1ubuntu2) ... 369s Setting up libgnutls30t64:ppc64el (3.8.3-1.1ubuntu2) ... 369s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 369s Preparing to unpack .../apt_2.7.14_ppc64el.deb ... 369s Unpacking apt (2.7.14) over (2.7.12) ... 369s Setting up apt (2.7.14) ... 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 370s Preparing to unpack .../librtmp1_2.4+20151223.gitfa8646d.1-2build6_ppc64el.deb ... 370s Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build6) over (2.4+20151223.gitfa8646d.1-2build4) ... 370s Preparing to unpack .../liblzma5_5.6.0-0.2_ppc64el.deb ... 370s Unpacking liblzma5:ppc64el (5.6.0-0.2) over (5.4.5-0.3) ... 370s Setting up liblzma5:ppc64el (5.6.0-0.2) ... 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 370s Preparing to unpack .../libblkid1_2.39.3-9ubuntu2_ppc64el.deb ... 370s Unpacking libblkid1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 370s Setting up libblkid1:ppc64el (2.39.3-9ubuntu2) ... 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 370s Preparing to unpack .../kmod_31+20240202-2ubuntu4_ppc64el.deb ... 370s Unpacking kmod (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 370s Preparing to unpack .../libkmod2_31+20240202-2ubuntu4_ppc64el.deb ... 370s Unpacking libkmod2:ppc64el (31+20240202-2ubuntu4) over (30+20230601-2ubuntu1) ... 370s Preparing to unpack .../libselinux1_3.5-2ubuntu1_ppc64el.deb ... 370s Unpacking libselinux1:ppc64el (3.5-2ubuntu1) over (3.5-2build1) ... 370s Setting up libselinux1:ppc64el (3.5-2ubuntu1) ... 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 370s Preparing to unpack .../libaudit-common_1%3a3.1.2-2.1_all.deb ... 370s Unpacking libaudit-common (1:3.1.2-2.1) over (1:3.1.2-2) ... 370s Setting up libaudit-common (1:3.1.2-2.1) ... 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 370s Preparing to unpack .../libcap-ng0_0.8.4-2build1_ppc64el.deb ... 370s Unpacking libcap-ng0:ppc64el (0.8.4-2build1) over (0.8.4-2) ... 370s Setting up libcap-ng0:ppc64el (0.8.4-2build1) ... 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 370s Preparing to unpack .../libaudit1_1%3a3.1.2-2.1_ppc64el.deb ... 370s Unpacking libaudit1:ppc64el (1:3.1.2-2.1) over (1:3.1.2-2) ... 370s Setting up libaudit1:ppc64el (1:3.1.2-2.1) ... 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 370s Preparing to unpack .../libpam0g_1.5.3-5ubuntu3_ppc64el.deb ... 370s Unpacking libpam0g:ppc64el (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 370s Setting up libpam0g:ppc64el (1.5.3-5ubuntu3) ... 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 370s Preparing to unpack .../libpam-modules-bin_1.5.3-5ubuntu3_ppc64el.deb ... 370s Unpacking libpam-modules-bin (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 370s Setting up libpam-modules-bin (1.5.3-5ubuntu3) ... 371s pam_namespace.service is a disabled or a static unit not running, not starting it. 371s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 371s Preparing to unpack .../libpam-modules_1.5.3-5ubuntu3_ppc64el.deb ... 371s Unpacking libpam-modules:ppc64el (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 371s Setting up libpam-modules:ppc64el (1.5.3-5ubuntu3) ... 371s Installing new version of config file /etc/security/namespace.init ... 371s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 371s Preparing to unpack .../libpam-runtime_1.5.3-5ubuntu3_all.deb ... 371s Unpacking libpam-runtime (1.5.3-5ubuntu3) over (1.5.2-9.1ubuntu3) ... 371s Setting up libpam-runtime (1.5.3-5ubuntu3) ... 371s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 371s Preparing to unpack .../0-dbus-session-bus-common_1.14.10-4ubuntu2_all.deb ... 371s Unpacking dbus-session-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 371s Preparing to unpack .../1-dbus-user-session_1.14.10-4ubuntu2_ppc64el.deb ... 371s Unpacking dbus-user-session (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 371s Preparing to unpack .../2-libapparmor1_4.0.0-beta3-0ubuntu2_ppc64el.deb ... 371s Unpacking libapparmor1:ppc64el (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 371s Preparing to unpack .../3-dbus-system-bus-common_1.14.10-4ubuntu2_all.deb ... 371s Unpacking dbus-system-bus-common (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 371s Preparing to unpack .../4-dbus-bin_1.14.10-4ubuntu2_ppc64el.deb ... 371s Unpacking dbus-bin (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 371s Preparing to unpack .../5-dbus_1.14.10-4ubuntu2_ppc64el.deb ... 371s Unpacking dbus (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 371s Preparing to unpack .../6-dbus-daemon_1.14.10-4ubuntu2_ppc64el.deb ... 371s Unpacking dbus-daemon (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 372s Preparing to unpack .../7-libdbus-1-3_1.14.10-4ubuntu2_ppc64el.deb ... 372s Unpacking libdbus-1-3:ppc64el (1.14.10-4ubuntu2) over (1.14.10-4ubuntu1) ... 372s Preparing to unpack .../8-libdevmapper1.02.1_2%3a1.02.185-3ubuntu2_ppc64el.deb ... 372s Unpacking libdevmapper1.02.1:ppc64el (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 372s Preparing to unpack .../9-libuuid1_2.39.3-9ubuntu2_ppc64el.deb ... 372s Unpacking libuuid1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 372s Setting up libuuid1:ppc64el (2.39.3-9ubuntu2) ... 372s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 372s Preparing to unpack .../libcryptsetup12_2%3a2.7.0-1ubuntu2_ppc64el.deb ... 372s Unpacking libcryptsetup12:ppc64el (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 372s Preparing to unpack .../libfdisk1_2.39.3-9ubuntu2_ppc64el.deb ... 372s Unpacking libfdisk1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 372s Preparing to unpack .../libseccomp2_2.5.5-1ubuntu2_ppc64el.deb ... 372s Unpacking libseccomp2:ppc64el (2.5.5-1ubuntu2) over (2.5.5-1ubuntu1) ... 372s Setting up libseccomp2:ppc64el (2.5.5-1ubuntu2) ... 372s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 372s Preparing to unpack .../mount_2.39.3-9ubuntu2_ppc64el.deb ... 372s Unpacking mount (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 372s Preparing to unpack .../libmount1_2.39.3-9ubuntu2_ppc64el.deb ... 372s Unpacking libmount1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 372s Setting up libmount1:ppc64el (2.39.3-9ubuntu2) ... 372s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 372s Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu1_ppc64el.deb ... 372s Unpacking zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 372s Setting up zlib1g:ppc64el (1:1.3.dfsg-3.1ubuntu1) ... 372s Setting up libpython3.12-minimal:ppc64el (3.12.2-4build3) ... 372s Setting up python3.12-minimal (3.12.2-4build3) ... 373s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 373s Preparing to unpack .../python3-minimal_3.12.2-0ubuntu1_ppc64el.deb ... 373s Unpacking python3-minimal (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 373s Setting up python3-minimal (3.12.2-0ubuntu1) ... 373s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 373s Preparing to unpack .../python3_3.12.2-0ubuntu1_ppc64el.deb ... 373s Unpacking python3 (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 373s Preparing to unpack .../libplymouth5_24.004.60-1ubuntu6_ppc64el.deb ... 373s Unpacking libplymouth5:ppc64el (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 373s dpkg: libpng16-16:ppc64el: dependency problems, but removing anyway as you requested: 373s libfreetype6:ppc64el depends on libpng16-16 (>= 1.6.2-1). 373s 374s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70200 files and directories currently installed.) 374s Removing libpng16-16:ppc64el (1.6.43-1) ... 374s Selecting previously unselected package libpng16-16t64:ppc64el. 374s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70190 files and directories currently installed.) 374s Preparing to unpack .../0-libpng16-16t64_1.6.43-3_ppc64el.deb ... 374s Unpacking libpng16-16t64:ppc64el (1.6.43-3) ... 374s Preparing to unpack .../1-libbrotli1_1.1.0-2build1_ppc64el.deb ... 374s Unpacking libbrotli1:ppc64el (1.1.0-2build1) over (1.1.0-2) ... 374s Preparing to unpack .../2-libfreetype6_2.13.2+dfsg-1build2_ppc64el.deb ... 374s Unpacking libfreetype6:ppc64el (2.13.2+dfsg-1build2) over (2.13.2+dfsg-1) ... 374s Preparing to unpack .../3-libsqlite3-0_3.45.1-1ubuntu1_ppc64el.deb ... 374s Unpacking libsqlite3-0:ppc64el (3.45.1-1ubuntu1) over (3.45.1-1) ... 374s Preparing to unpack .../4-pinentry-curses_1.2.1-3ubuntu4_ppc64el.deb ... 374s Unpacking pinentry-curses (1.2.1-3ubuntu4) over (1.2.1-3ubuntu1) ... 374s Preparing to unpack .../5-gcc-14-base_14-20240315-1ubuntu1_ppc64el.deb ... 374s Unpacking gcc-14-base:ppc64el (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 374s Setting up gcc-14-base:ppc64el (14-20240315-1ubuntu1) ... 374s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 374s Preparing to unpack .../libgcc-s1_14-20240315-1ubuntu1_ppc64el.deb ... 374s Unpacking libgcc-s1:ppc64el (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 374s Setting up libgcc-s1:ppc64el (14-20240315-1ubuntu1) ... 374s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 374s Preparing to unpack .../libstdc++6_14-20240315-1ubuntu1_ppc64el.deb ... 374s Unpacking libstdc++6:ppc64el (14-20240315-1ubuntu1) over (14-20240303-1ubuntu1) ... 374s Setting up libstdc++6:ppc64el (14-20240315-1ubuntu1) ... 374s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 374s Preparing to unpack .../python-apt-common_2.7.7_all.deb ... 374s Unpacking python-apt-common (2.7.7) over (2.7.6) ... 374s Preparing to unpack .../libsmartcols1_2.39.3-9ubuntu2_ppc64el.deb ... 374s Unpacking libsmartcols1:ppc64el (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 374s Setting up libsmartcols1:ppc64el (2.39.3-9ubuntu2) ... 374s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70201 files and directories currently installed.) 374s Preparing to unpack .../00-readline-common_8.2-4_all.deb ... 374s Unpacking readline-common (8.2-4) over (8.2-3) ... 374s Preparing to unpack .../01-bsdextrautils_2.39.3-9ubuntu2_ppc64el.deb ... 374s Unpacking bsdextrautils (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 374s Preparing to unpack .../02-groff-base_1.23.0-3build1_ppc64el.deb ... 374s Unpacking groff-base (1.23.0-3build1) over (1.23.0-3) ... 374s Preparing to unpack .../03-libpython3-stdlib_3.12.2-0ubuntu1_ppc64el.deb ... 374s Unpacking libpython3-stdlib:ppc64el (3.12.2-0ubuntu1) over (3.12.1-0ubuntu2) ... 374s Preparing to unpack .../04-libfido2-1_1.14.0-1build1_ppc64el.deb ... 374s Unpacking libfido2-1:ppc64el (1.14.0-1build1) over (1.14.0-1) ... 374s Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-6ubuntu1_ppc64el.deb ... 374s Unpacking libgssapi-krb5-2:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 374s Preparing to unpack .../06-libkrb5-3_1.20.1-6ubuntu1_ppc64el.deb ... 374s Unpacking libkrb5-3:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 374s Preparing to unpack .../07-libkrb5support0_1.20.1-6ubuntu1_ppc64el.deb ... 374s Unpacking libkrb5support0:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 374s Preparing to unpack .../08-libk5crypto3_1.20.1-6ubuntu1_ppc64el.deb ... 374s Unpacking libk5crypto3:ppc64el (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 374s Preparing to unpack .../09-libcom-err2_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 374s Unpacking libcom-err2:ppc64el (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 374s Preparing to unpack .../10-libproc2-0_2%3a4.0.4-4ubuntu2_ppc64el.deb ... 374s Unpacking libproc2-0:ppc64el (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 374s Preparing to unpack .../11-procps_2%3a4.0.4-4ubuntu2_ppc64el.deb ... 374s Unpacking procps (2:4.0.4-4ubuntu2) over (2:4.0.4-4ubuntu1) ... 374s Preparing to unpack .../12-libnghttp2-14_1.59.0-1build1_ppc64el.deb ... 374s Unpacking libnghttp2-14:ppc64el (1.59.0-1build1) over (1.59.0-1) ... 374s Preparing to unpack .../13-dpkg_1.22.6ubuntu5_ppc64el.deb ... 374s Unpacking dpkg (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 375s Setting up dpkg (1.22.6ubuntu5) ... 375s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 375s Preparing to unpack .../util-linux_2.39.3-9ubuntu2_ppc64el.deb ... 375s Unpacking util-linux (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 375s Setting up util-linux (2.39.3-9ubuntu2) ... 376s fstrim.service is a disabled or a static unit not running, not starting it. 376s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 376s Preparing to unpack .../libxml2_2.9.14+dfsg-1.3ubuntu2_ppc64el.deb ... 376s Unpacking libxml2:ppc64el (2.9.14+dfsg-1.3ubuntu2) over (2.9.14+dfsg-1.3ubuntu1) ... 376s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 376s Removing libatm1:ppc64el (1:2.5.1-5) ... 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70197 files and directories currently installed.) 377s Preparing to unpack .../libbpf1_1%3a1.3.0-2build1_ppc64el.deb ... 377s Unpacking libbpf1:ppc64el (1:1.3.0-2build1) over (1:1.3.0-2) ... 377s Preparing to unpack .../iproute2_6.1.0-1ubuntu5_ppc64el.deb ... 377s Unpacking iproute2 (6.1.0-1ubuntu5) over (6.1.0-1ubuntu2) ... 377s dpkg: libelf1:ppc64el: dependency problems, but removing anyway as you requested: 377s linux-headers-6.8.0-11-generic depends on libelf1 (>= 0.144). 377s 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70197 files and directories currently installed.) 377s Removing libelf1:ppc64el (0.190-1) ... 377s Selecting previously unselected package libelf1t64:ppc64el. 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70192 files and directories currently installed.) 377s Preparing to unpack .../libelf1t64_0.190-1.1build2_ppc64el.deb ... 377s Unpacking libelf1t64:ppc64el (0.190-1.1build2) ... 377s Preparing to unpack .../dhcpcd-base_1%3a10.0.6-1ubuntu2_ppc64el.deb ... 377s Unpacking dhcpcd-base (1:10.0.6-1ubuntu2) over (1:10.0.6-1ubuntu1) ... 377s Preparing to unpack .../file_1%3a5.45-3_ppc64el.deb ... 377s Unpacking file (1:5.45-3) over (1:5.45-2) ... 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70197 files and directories currently installed.) 377s Removing libmagic1:ppc64el (1:5.45-2) ... 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70187 files and directories currently installed.) 377s Preparing to unpack .../libmagic-mgc_1%3a5.45-3_ppc64el.deb ... 377s Unpacking libmagic-mgc (1:5.45-3) over (1:5.45-2) ... 377s Selecting previously unselected package libmagic1t64:ppc64el. 377s Preparing to unpack .../libmagic1t64_1%3a5.45-3_ppc64el.deb ... 377s Unpacking libmagic1t64:ppc64el (1:5.45-3) ... 377s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 377s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 377s Preparing to unpack .../lsof_4.95.0-1build2_ppc64el.deb ... 377s Unpacking lsof (4.95.0-1build2) over (4.95.0-1build1) ... 377s Preparing to unpack .../libnsl2_1.3.0-3build2_ppc64el.deb ... 377s Unpacking libnsl2:ppc64el (1.3.0-3build2) over (1.3.0-3) ... 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70198 files and directories currently installed.) 377s Removing libtirpc3:ppc64el (1.3.4+ds-1build1) ... 377s Selecting previously unselected package libtirpc3t64:ppc64el. 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70192 files and directories currently installed.) 377s Preparing to unpack .../libtirpc3t64_1.3.4+ds-1.1_ppc64el.deb ... 377s Adding 'diversion of /lib/powerpc64le-linux-gnu/libtirpc.so.3 to /lib/powerpc64le-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 377s Adding 'diversion of /lib/powerpc64le-linux-gnu/libtirpc.so.3.0.0 to /lib/powerpc64le-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 377s Unpacking libtirpc3t64:ppc64el (1.3.4+ds-1.1) ... 377s Preparing to unpack .../multipath-tools_0.9.4-5ubuntu6_ppc64el.deb ... 377s Unpacking multipath-tools (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ... 377s dpkg: liburcu8:ppc64el: dependency problems, but removing anyway as you requested: 377s xfsprogs depends on liburcu8 (>= 0.13.0). 377s 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70202 files and directories currently installed.) 377s Removing liburcu8:ppc64el (0.14.0-3) ... 377s Selecting previously unselected package liburcu8t64:ppc64el. 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70183 files and directories currently installed.) 377s Preparing to unpack .../liburcu8t64_0.14.0-3.1_ppc64el.deb ... 377s Unpacking liburcu8t64:ppc64el (0.14.0-3.1) ... 377s Preparing to unpack .../bind9-host_1%3a9.18.24-0ubuntu3_ppc64el.deb ... 377s Unpacking bind9-host (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 377s Preparing to unpack .../bind9-dnsutils_1%3a9.18.24-0ubuntu3_ppc64el.deb ... 377s Unpacking bind9-dnsutils (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 377s Preparing to unpack .../bind9-libs_1%3a9.18.24-0ubuntu3_ppc64el.deb ... 377s Unpacking bind9-libs:ppc64el (1:9.18.24-0ubuntu3) over (1:9.18.21-0ubuntu1) ... 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70203 files and directories currently installed.) 377s Removing libuv1:ppc64el (1.48.0-1) ... 377s Selecting previously unselected package libuv1t64:ppc64el. 377s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70198 files and directories currently installed.) 377s Preparing to unpack .../libuv1t64_1.48.0-1.1_ppc64el.deb ... 377s Unpacking libuv1t64:ppc64el (1.48.0-1.1) ... 378s Preparing to unpack .../liblocale-gettext-perl_1.07-6ubuntu4_ppc64el.deb ... 378s Unpacking liblocale-gettext-perl (1.07-6ubuntu4) over (1.07-6build1) ... 378s Preparing to unpack .../uuid-runtime_2.39.3-9ubuntu2_ppc64el.deb ... 378s Unpacking uuid-runtime (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 378s Preparing to unpack .../libdebconfclient0_0.271ubuntu2_ppc64el.deb ... 378s Unpacking libdebconfclient0:ppc64el (0.271ubuntu2) over (0.271ubuntu1) ... 378s Setting up libdebconfclient0:ppc64el (0.271ubuntu2) ... 378s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 378s Preparing to unpack .../libsemanage-common_3.5-1build4_all.deb ... 378s Unpacking libsemanage-common (3.5-1build4) over (3.5-1build2) ... 378s Setting up libsemanage-common (3.5-1build4) ... 378s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 378s Preparing to unpack .../libsemanage2_3.5-1build4_ppc64el.deb ... 378s Unpacking libsemanage2:ppc64el (3.5-1build4) over (3.5-1build2) ... 378s Setting up libsemanage2:ppc64el (3.5-1build4) ... 378s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 378s Preparing to unpack .../install-info_7.1-3build1_ppc64el.deb ... 378s Unpacking install-info (7.1-3build1) over (7.1-3) ... 378s Setting up install-info (7.1-3build1) ... 378s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 70204 files and directories currently installed.) 378s Preparing to unpack .../00-gcc-13-base_13.2.0-21ubuntu1_ppc64el.deb ... 378s Unpacking gcc-13-base:ppc64el (13.2.0-21ubuntu1) over (13.2.0-17ubuntu2) ... 378s Preparing to unpack .../01-libss2_1.47.0-2.4~exp1ubuntu2_ppc64el.deb ... 378s Unpacking libss2:ppc64el (1.47.0-2.4~exp1ubuntu2) over (1.47.0-2ubuntu1) ... 378s Preparing to unpack .../02-dmsetup_2%3a1.02.185-3ubuntu2_ppc64el.deb ... 378s Unpacking dmsetup (2:1.02.185-3ubuntu2) over (2:1.02.185-3ubuntu1) ... 378s Preparing to unpack .../03-eject_2.39.3-9ubuntu2_ppc64el.deb ... 378s Unpacking eject (2.39.3-9ubuntu2) over (2.39.3-6ubuntu2) ... 378s Preparing to unpack .../04-krb5-locales_1.20.1-6ubuntu1_all.deb ... 378s Unpacking krb5-locales (1.20.1-6ubuntu1) over (1.20.1-5build1) ... 378s Preparing to unpack .../05-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 378s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 378s Preparing to unpack .../06-libslang2_2.3.3-3build1_ppc64el.deb ... 378s Unpacking libslang2:ppc64el (2.3.3-3build1) over (2.3.3-3) ... 378s Preparing to unpack .../07-libtext-charwidth-perl_0.04-11build2_ppc64el.deb ... 378s Unpacking libtext-charwidth-perl:ppc64el (0.04-11build2) over (0.04-11build1) ... 378s Preparing to unpack .../08-libtext-iconv-perl_1.7-8build2_ppc64el.deb ... 378s Unpacking libtext-iconv-perl:ppc64el (1.7-8build2) over (1.7-8build1) ... 378s Preparing to unpack .../09-python3-yaml_6.0.1-2build1_ppc64el.deb ... 378s Unpacking python3-yaml (6.0.1-2build1) over (6.0.1-2) ... 378s Preparing to unpack .../10-python3-setuptools_68.1.2-2ubuntu1_all.deb ... 378s Unpacking python3-setuptools (68.1.2-2ubuntu1) over (68.1.2-2) ... 378s Preparing to unpack .../11-python3-pkg-resources_68.1.2-2ubuntu1_all.deb ... 378s Unpacking python3-pkg-resources (68.1.2-2ubuntu1) over (68.1.2-2) ... 378s Preparing to unpack .../12-rsyslog_8.2312.0-3ubuntu7_ppc64el.deb ... 379s Unpacking rsyslog (8.2312.0-3ubuntu7) over (8.2312.0-3ubuntu3) ... 379s Preparing to unpack .../13-vim-tiny_2%3a9.1.0016-1ubuntu6_ppc64el.deb ... 379s Unpacking vim-tiny (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 379s Preparing to unpack .../14-vim-common_2%3a9.1.0016-1ubuntu6_all.deb ... 379s Unpacking vim-common (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 379s Selecting previously unselected package xdg-user-dirs. 379s Preparing to unpack .../15-xdg-user-dirs_0.18-1_ppc64el.deb ... 379s Unpacking xdg-user-dirs (0.18-1) ... 379s Preparing to unpack .../16-xxd_2%3a9.1.0016-1ubuntu6_ppc64el.deb ... 379s Unpacking xxd (2:9.1.0016-1ubuntu6) over (2:9.1.0016-1ubuntu2) ... 379s Preparing to unpack .../17-apparmor_4.0.0-beta3-0ubuntu2_ppc64el.deb ... 379s Unpacking apparmor (4.0.0-beta3-0ubuntu2) over (4.0.0~alpha4-0ubuntu1) ... 379s Preparing to unpack .../18-ftp_20230507-2build1_all.deb ... 379s Unpacking ftp (20230507-2build1) over (20230507-2) ... 379s Preparing to unpack .../19-inetutils-telnet_2%3a2.5-3ubuntu3_ppc64el.deb ... 379s Unpacking inetutils-telnet (2:2.5-3ubuntu3) over (2:2.5-3ubuntu1) ... 379s Preparing to unpack .../20-info_7.1-3build1_ppc64el.deb ... 379s Unpacking info (7.1-3build1) over (7.1-3) ... 379s Preparing to unpack .../21-libusb-1.0-0_2%3a1.0.27-1_ppc64el.deb ... 379s Unpacking libusb-1.0-0:ppc64el (2:1.0.27-1) over (2:1.0.26-1) ... 380s Preparing to unpack .../22-libxmuu1_2%3a1.1.3-3build1_ppc64el.deb ... 380s Unpacking libxmuu1:ppc64el (2:1.1.3-3build1) over (2:1.1.3-3) ... 380s Preparing to unpack .../23-lshw_02.19.git.2021.06.19.996aaad9c7-2build2_ppc64el.deb ... 380s Unpacking lshw (02.19.git.2021.06.19.996aaad9c7-2build2) over (02.19.git.2021.06.19.996aaad9c7-2build1) ... 380s Selecting previously unselected package manpages. 380s Preparing to unpack .../24-manpages_6.05.01-1_all.deb ... 380s Unpacking manpages (6.05.01-1) ... 380s Preparing to unpack .../25-mtr-tiny_0.95-1.1build1_ppc64el.deb ... 380s Unpacking mtr-tiny (0.95-1.1build1) over (0.95-1.1) ... 380s Preparing to unpack .../26-plymouth-theme-ubuntu-text_24.004.60-1ubuntu6_ppc64el.deb ... 380s Unpacking plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 380s Preparing to unpack .../27-plymouth_24.004.60-1ubuntu6_ppc64el.deb ... 380s Unpacking plymouth (24.004.60-1ubuntu6) over (24.004.60-1ubuntu3) ... 380s Preparing to unpack .../28-telnet_0.17+2.5-3ubuntu3_all.deb ... 380s Unpacking telnet (0.17+2.5-3ubuntu3) over (0.17+2.5-3ubuntu1) ... 380s Preparing to unpack .../29-usb.ids_2024.03.18-1_all.deb ... 380s Unpacking usb.ids (2024.03.18-1) over (2024.01.30-1) ... 380s Preparing to unpack .../30-xz-utils_5.6.0-0.2_ppc64el.deb ... 380s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ... 380s Selecting previously unselected package libllvm18:ppc64el. 380s Preparing to unpack .../31-libllvm18_1%3a18.1.2-1ubuntu2_ppc64el.deb ... 380s Unpacking libllvm18:ppc64el (1:18.1.2-1ubuntu2) ... 381s Selecting previously unselected package libclang-cpp18. 381s Preparing to unpack .../32-libclang-cpp18_1%3a18.1.2-1ubuntu2_ppc64el.deb ... 381s Unpacking libclang-cpp18 (1:18.1.2-1ubuntu2) ... 381s Selecting previously unselected package libbpfcc:ppc64el. 381s Preparing to unpack .../33-libbpfcc_0.29.1+ds-1ubuntu4_ppc64el.deb ... 381s Unpacking libbpfcc:ppc64el (0.29.1+ds-1ubuntu4) ... 381s Selecting previously unselected package python3-bpfcc. 381s Preparing to unpack .../34-python3-bpfcc_0.29.1+ds-1ubuntu4_all.deb ... 382s Unpacking python3-bpfcc (0.29.1+ds-1ubuntu4) ... 382s Selecting previously unselected package ieee-data. 382s Preparing to unpack .../35-ieee-data_20220827.1_all.deb ... 382s Unpacking ieee-data (20220827.1) ... 382s Selecting previously unselected package python3-netaddr. 382s Preparing to unpack .../36-python3-netaddr_0.8.0-2ubuntu1_all.deb ... 382s Unpacking python3-netaddr (0.8.0-2ubuntu1) ... 382s Selecting previously unselected package bpfcc-tools. 382s Preparing to unpack .../37-bpfcc-tools_0.29.1+ds-1ubuntu4_all.deb ... 382s Unpacking bpfcc-tools (0.29.1+ds-1ubuntu4) ... 382s Selecting previously unselected package libclang1-18. 382s Preparing to unpack .../38-libclang1-18_1%3a18.1.2-1ubuntu2_ppc64el.deb ... 382s Unpacking libclang1-18 (1:18.1.2-1ubuntu2) ... 382s Selecting previously unselected package libdw1t64:ppc64el. 382s Preparing to unpack .../39-libdw1t64_0.190-1.1build2_ppc64el.deb ... 382s Unpacking libdw1t64:ppc64el (0.190-1.1build2) ... 382s Selecting previously unselected package bpftrace. 382s Preparing to unpack .../40-bpftrace_0.20.2-1ubuntu1_ppc64el.deb ... 382s Unpacking bpftrace (0.20.2-1ubuntu1) ... 382s Preparing to unpack .../41-cryptsetup-bin_2%3a2.7.0-1ubuntu2_ppc64el.deb ... 382s Unpacking cryptsetup-bin (2:2.7.0-1ubuntu2) over (2:2.7.0-1ubuntu1) ... 382s Preparing to unpack .../42-dpkg-dev_1.22.6ubuntu5_all.deb ... 382s Unpacking dpkg-dev (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 382s Preparing to unpack .../43-libdpkg-perl_1.22.6ubuntu5_all.deb ... 382s Unpacking libdpkg-perl (1.22.6ubuntu5) over (1.22.4ubuntu5) ... 382s Selecting previously unselected package fonts-dejavu-mono. 382s Preparing to unpack .../44-fonts-dejavu-mono_2.37-8_all.deb ... 382s Unpacking fonts-dejavu-mono (2.37-8) ... 382s Selecting previously unselected package fonts-dejavu-core. 382s Preparing to unpack .../45-fonts-dejavu-core_2.37-8_all.deb ... 382s Unpacking fonts-dejavu-core (2.37-8) ... 382s Selecting previously unselected package fontconfig-config. 382s Preparing to unpack .../46-fontconfig-config_2.15.0-1.1ubuntu1_ppc64el.deb ... 383s Unpacking fontconfig-config (2.15.0-1.1ubuntu1) ... 383s Preparing to unpack .../47-libprotobuf-c1_1.4.1-1ubuntu3_ppc64el.deb ... 383s Unpacking libprotobuf-c1:ppc64el (1.4.1-1ubuntu3) over (1.4.1-1ubuntu2) ... 383s Preparing to unpack .../48-gnupg-l10n_2.4.4-2ubuntu15_all.deb ... 383s Unpacking gnupg-l10n (2.4.4-2ubuntu15) over (2.4.4-2ubuntu7) ... 383s Preparing to unpack .../49-libibverbs1_50.0-2build1_ppc64el.deb ... 383s Unpacking libibverbs1:ppc64el (50.0-2build1) over (50.0-2) ... 383s Preparing to unpack .../50-ibverbs-providers_50.0-2build1_ppc64el.deb ... 383s Unpacking ibverbs-providers:ppc64el (50.0-2build1) over (50.0-2) ... 383s Preparing to unpack .../51-jq_1.7.1-3_ppc64el.deb ... 383s Unpacking jq (1.7.1-3) over (1.7.1-2) ... 383s Preparing to unpack .../52-libjq1_1.7.1-3_ppc64el.deb ... 383s Unpacking libjq1:ppc64el (1.7.1-3) over (1.7.1-2) ... 383s Selecting previously unselected package libaio1t64:ppc64el. 383s Preparing to unpack .../53-libaio1t64_0.3.113-6_ppc64el.deb ... 383s Unpacking libaio1t64:ppc64el (0.3.113-6) ... 383s Selecting previously unselected package libatm1t64:ppc64el. 383s Preparing to unpack .../54-libatm1t64_1%3a2.5.1-5.1_ppc64el.deb ... 383s Unpacking libatm1t64:ppc64el (1:2.5.1-5.1) ... 383s Selecting previously unselected package libc-dev-bin. 383s Preparing to unpack .../55-libc-dev-bin_2.39-0ubuntu6_ppc64el.deb ... 383s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 383s Selecting previously unselected package libfontconfig1:ppc64el. 383s Preparing to unpack .../56-libfontconfig1_2.15.0-1.1ubuntu1_ppc64el.deb ... 383s Unpacking libfontconfig1:ppc64el (2.15.0-1.1ubuntu1) ... 383s Selecting previously unselected package libjpeg-turbo8:ppc64el. 383s Preparing to unpack .../57-libjpeg-turbo8_2.1.5-2ubuntu1_ppc64el.deb ... 383s Unpacking libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 383s Selecting previously unselected package libjpeg8:ppc64el. 383s Preparing to unpack .../58-libjpeg8_8c-2ubuntu11_ppc64el.deb ... 383s Unpacking libjpeg8:ppc64el (8c-2ubuntu11) ... 383s Selecting previously unselected package libdeflate0:ppc64el. 383s Preparing to unpack .../59-libdeflate0_1.19-1_ppc64el.deb ... 383s Unpacking libdeflate0:ppc64el (1.19-1) ... 383s Selecting previously unselected package libjbig0:ppc64el. 383s Preparing to unpack .../60-libjbig0_2.1-6.1ubuntu1_ppc64el.deb ... 383s Unpacking libjbig0:ppc64el (2.1-6.1ubuntu1) ... 383s Selecting previously unselected package liblerc4:ppc64el. 383s Preparing to unpack .../61-liblerc4_4.0.0+ds-4ubuntu1_ppc64el.deb ... 383s Unpacking liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 383s Selecting previously unselected package libsharpyuv0:ppc64el. 383s Preparing to unpack .../62-libsharpyuv0_1.3.2-0.4build2_ppc64el.deb ... 383s Unpacking libsharpyuv0:ppc64el (1.3.2-0.4build2) ... 383s Selecting previously unselected package libwebp7:ppc64el. 383s Preparing to unpack .../63-libwebp7_1.3.2-0.4build2_ppc64el.deb ... 383s Unpacking libwebp7:ppc64el (1.3.2-0.4build2) ... 383s Selecting previously unselected package libtiff6:ppc64el. 383s Preparing to unpack .../64-libtiff6_4.5.1+git230720-4ubuntu1_ppc64el.deb ... 383s Unpacking libtiff6:ppc64el (4.5.1+git230720-4ubuntu1) ... 383s Selecting previously unselected package libxpm4:ppc64el. 383s Preparing to unpack .../65-libxpm4_1%3a3.5.17-1build1_ppc64el.deb ... 383s Unpacking libxpm4:ppc64el (1:3.5.17-1build1) ... 383s Selecting previously unselected package libgd3:ppc64el. 383s Preparing to unpack .../66-libgd3_2.3.3-9ubuntu3_ppc64el.deb ... 383s Unpacking libgd3:ppc64el (2.3.3-9ubuntu3) ... 383s Selecting previously unselected package libc-devtools. 383s Preparing to unpack .../67-libc-devtools_2.39-0ubuntu6_ppc64el.deb ... 383s Unpacking libc-devtools (2.39-0ubuntu6) ... 383s Selecting previously unselected package linux-libc-dev:ppc64el. 383s Preparing to unpack .../68-linux-libc-dev_6.8.0-20.20_ppc64el.deb ... 383s Unpacking linux-libc-dev:ppc64el (6.8.0-20.20) ... 383s Selecting previously unselected package libcrypt-dev:ppc64el. 383s Preparing to unpack .../69-libcrypt-dev_1%3a4.4.36-4_ppc64el.deb ... 383s Unpacking libcrypt-dev:ppc64el (1:4.4.36-4) ... 383s Selecting previously unselected package rpcsvc-proto. 383s Preparing to unpack .../70-rpcsvc-proto_1.4.2-0ubuntu6_ppc64el.deb ... 383s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 383s Selecting previously unselected package libc6-dev:ppc64el. 383s Preparing to unpack .../71-libc6-dev_2.39-0ubuntu6_ppc64el.deb ... 383s Unpacking libc6-dev:ppc64el (2.39-0ubuntu6) ... 383s Preparing to unpack .../72-libevent-core-2.1-7_2.1.12-stable-9build1_ppc64el.deb ... 383s Unpacking libevent-core-2.1-7:ppc64el (2.1.12-stable-9build1) over (2.1.12-stable-9) ... 383s Preparing to unpack .../73-libftdi1-2_1.5-6build4_ppc64el.deb ... 383s Unpacking libftdi1-2:ppc64el (1.5-6build4) over (1.5-6build3) ... 383s Preparing to unpack .../74-libldap-common_2.6.7+dfsg-1~exp1ubuntu6_all.deb ... 383s Unpacking libldap-common (2.6.7+dfsg-1~exp1ubuntu6) over (2.6.7+dfsg-1~exp1ubuntu1) ... 383s Selecting previously unselected package libunwind8:ppc64el. 383s Preparing to unpack .../75-libunwind8_1.6.2-3_ppc64el.deb ... 383s Unpacking libunwind8:ppc64el (1.6.2-3) ... 383s Selecting previously unselected package linux-modules-6.8.0-20-generic. 383s Preparing to unpack .../76-linux-modules-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 383s Unpacking linux-modules-6.8.0-20-generic (6.8.0-20.20) ... 384s Selecting previously unselected package linux-image-6.8.0-20-generic. 384s Preparing to unpack .../77-linux-image-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 384s Unpacking linux-image-6.8.0-20-generic (6.8.0-20.20) ... 384s Selecting previously unselected package linux-modules-extra-6.8.0-20-generic. 384s Preparing to unpack .../78-linux-modules-extra-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 384s Unpacking linux-modules-extra-6.8.0-20-generic (6.8.0-20.20) ... 386s Preparing to unpack .../79-linux-generic_6.8.0-20.20+1_ppc64el.deb ... 386s Unpacking linux-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 386s Preparing to unpack .../80-linux-image-generic_6.8.0-20.20+1_ppc64el.deb ... 386s Unpacking linux-image-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 386s Preparing to unpack .../81-linux-virtual_6.8.0-20.20+1_ppc64el.deb ... 386s Unpacking linux-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 386s Preparing to unpack .../82-linux-image-virtual_6.8.0-20.20+1_ppc64el.deb ... 386s Unpacking linux-image-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 386s Preparing to unpack .../83-linux-headers-virtual_6.8.0-20.20+1_ppc64el.deb ... 386s Unpacking linux-headers-virtual (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 386s Selecting previously unselected package linux-headers-6.8.0-20. 386s Preparing to unpack .../84-linux-headers-6.8.0-20_6.8.0-20.20_all.deb ... 386s Unpacking linux-headers-6.8.0-20 (6.8.0-20.20) ... 389s Selecting previously unselected package linux-headers-6.8.0-20-generic. 390s Preparing to unpack .../85-linux-headers-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 390s Unpacking linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 390s Preparing to unpack .../86-linux-headers-generic_6.8.0-20.20+1_ppc64el.deb ... 390s Unpacking linux-headers-generic (6.8.0-20.20+1) over (6.8.0-11.11+1) ... 390s Selecting previously unselected package linux-tools-common. 390s Preparing to unpack .../87-linux-tools-common_6.8.0-20.20_all.deb ... 390s Unpacking linux-tools-common (6.8.0-20.20) ... 390s Selecting previously unselected package linux-tools-6.8.0-20. 390s Preparing to unpack .../88-linux-tools-6.8.0-20_6.8.0-20.20_ppc64el.deb ... 390s Unpacking linux-tools-6.8.0-20 (6.8.0-20.20) ... 391s Selecting previously unselected package linux-tools-6.8.0-20-generic. 391s Preparing to unpack .../89-linux-tools-6.8.0-20-generic_6.8.0-20.20_ppc64el.deb ... 391s Unpacking linux-tools-6.8.0-20-generic (6.8.0-20.20) ... 391s Selecting previously unselected package manpages-dev. 391s Preparing to unpack .../90-manpages-dev_6.05.01-1_all.deb ... 391s Unpacking manpages-dev (6.05.01-1) ... 391s Preparing to unpack .../91-python3-distutils_3.12.2-3ubuntu1.1_all.deb ... 391s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 391s Preparing to unpack .../92-python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ... 391s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 391s Preparing to unpack .../93-python3-pyrsistent_0.20.0-1build1_ppc64el.deb ... 391s Unpacking python3-pyrsistent:ppc64el (0.20.0-1build1) over (0.20.0-1) ... 391s Preparing to unpack .../94-python3-typing-extensions_4.10.0-1_all.deb ... 391s Unpacking python3-typing-extensions (4.10.0-1) over (4.9.0-1) ... 391s Selecting previously unselected package ubuntu-kernel-accessories. 391s Preparing to unpack .../95-ubuntu-kernel-accessories_1.536build1_ppc64el.deb ... 391s Unpacking ubuntu-kernel-accessories (1.536build1) ... 391s Preparing to unpack .../96-kpartx_0.9.4-5ubuntu6_ppc64el.deb ... 391s Unpacking kpartx (0.9.4-5ubuntu6) over (0.9.4-5ubuntu3) ... 391s Setting up pinentry-curses (1.2.1-3ubuntu4) ... 391s Setting up motd-news-config (13ubuntu8) ... 391s Setting up libtext-iconv-perl:ppc64el (1.7-8build2) ... 391s Setting up libtext-charwidth-perl:ppc64el (0.04-11build2) ... 391s Setting up libsharpyuv0:ppc64el (1.3.2-0.4build2) ... 391s Setting up liburcu8t64:ppc64el (0.14.0-3.1) ... 391s Setting up tcpdump (4.99.4-3ubuntu2) ... 392s Setting up libibverbs1:ppc64el (50.0-2build1) ... 392s Setting up systemd-sysv (255.4-1ubuntu5) ... 392s Setting up ubuntu-kernel-accessories (1.536build1) ... 392s Setting up libapparmor1:ppc64el (4.0.0-beta3-0ubuntu2) ... 392s Setting up libatm1t64:ppc64el (1:2.5.1-5.1) ... 392s Setting up liblerc4:ppc64el (4.0.0+ds-4ubuntu1) ... 392s Setting up libgdbm6t64:ppc64el (1.23-5.1) ... 392s Setting up bsdextrautils (2.39.3-9ubuntu2) ... 392s Setting up libxpm4:ppc64el (1:3.5.17-1build1) ... 392s Setting up libgdbm-compat4t64:ppc64el (1.23-5.1) ... 392s Setting up xdg-user-dirs (0.18-1) ... 392s Setting up ibverbs-providers:ppc64el (50.0-2build1) ... 392s Setting up linux-headers-6.8.0-20 (6.8.0-20.20) ... 392s Setting up libmagic-mgc (1:5.45-3) ... 392s Setting up gawk (1:5.2.1-2build2) ... 392s Setting up libjq1:ppc64el (1.7.1-3) ... 392s Setting up manpages (6.05.01-1) ... 392s Setting up libtirpc-common (1.3.4+ds-1.1) ... 392s Setting up libbrotli1:ppc64el (1.1.0-2build1) ... 392s Setting up libsqlite3-0:ppc64el (3.45.1-1ubuntu1) ... 392s Setting up libsasl2-modules:ppc64el (2.1.28+dfsg1-5ubuntu1) ... 392s Setting up libuv1t64:ppc64el (1.48.0-1.1) ... 392s Setting up libmagic1t64:ppc64el (1:5.45-3) ... 392s Setting up rsyslog (8.2312.0-3ubuntu7) ... 392s info: The user `syslog' is already a member of `adm'. 393s Setting up libpsl5t64:ppc64el (0.21.2-1.1) ... 393s Setting up libnghttp2-14:ppc64el (1.59.0-1build1) ... 393s Setting up libdeflate0:ppc64el (1.19-1) ... 393s Setting up linux-libc-dev:ppc64el (6.8.0-20.20) ... 393s Setting up bc (1.07.1-3ubuntu2) ... 393s Setting up libnss-systemd:ppc64el (255.4-1ubuntu5) ... 393s Setting up krb5-locales (1.20.1-6ubuntu1) ... 393s Setting up libcom-err2:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 393s Setting up file (1:5.45-3) ... 393s Setting up lshw (02.19.git.2021.06.19.996aaad9c7-2build2) ... 393s Setting up libldap-common (2.6.7+dfsg-1~exp1ubuntu6) ... 393s Setting up libunwind8:ppc64el (1.6.2-3) ... 393s Setting up libprotobuf-c1:ppc64el (1.4.1-1ubuntu3) ... 393s Setting up libjbig0:ppc64el (2.1-6.1ubuntu1) ... 393s Setting up xxd (2:9.1.0016-1ubuntu6) ... 393s Setting up libelf1t64:ppc64el (0.190-1.1build2) ... 393s Setting up libkrb5support0:ppc64el (1.20.1-6ubuntu1) ... 393s Setting up libdw1t64:ppc64el (0.190-1.1build2) ... 393s Setting up linux-headers-6.8.0-20-generic (6.8.0-20.20) ... 393s Setting up eject (2.39.3-9ubuntu2) ... 393s Setting up apparmor (4.0.0-beta3-0ubuntu2) ... 393s Installing new version of config file /etc/apparmor.d/abstractions/authentication ... 393s Installing new version of config file /etc/apparmor.d/abstractions/crypto ... 393s Installing new version of config file /etc/apparmor.d/abstractions/kde-open5 ... 393s Installing new version of config file /etc/apparmor.d/abstractions/openssl ... 393s Installing new version of config file /etc/apparmor.d/code ... 393s Installing new version of config file /etc/apparmor.d/firefox ... 394s Reloading AppArmor profiles 395s Setting up libglib2.0-0t64:ppc64el (2.79.3-3ubuntu5) ... 395s No schema files found: doing nothing. 395s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 395s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 395s Setting up vim-common (2:9.1.0016-1ubuntu6) ... 395s Setting up gcc-13-base:ppc64el (13.2.0-21ubuntu1) ... 395s Setting up libqrtr-glib0:ppc64el (1.2.2-1ubuntu3) ... 395s Setting up libslang2:ppc64el (2.3.3-3build1) ... 395s Setting up libnvme1t64 (1.8-3) ... 395s Setting up mtr-tiny (0.95-1.1build1) ... 395s Setting up gnupg-l10n (2.4.4-2ubuntu15) ... 395s Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2build6) ... 395s Setting up libdbus-1-3:ppc64el (1.14.10-4ubuntu2) ... 395s Setting up xz-utils (5.6.0-0.2) ... 395s Setting up perl-modules-5.38 (5.38.2-3.2) ... 395s Setting up libproc2-0:ppc64el (2:4.0.4-4ubuntu2) ... 395s Setting up fonts-dejavu-mono (2.37-8) ... 395s Setting up libpng16-16t64:ppc64el (1.6.43-3) ... 395s Setting up systemd-timesyncd (255.4-1ubuntu5) ... 395s Setting up libevent-core-2.1-7:ppc64el (2.1.12-stable-9build1) ... 395s Setting up libss2:ppc64el (1.47.0-2.4~exp1ubuntu2) ... 395s Setting up usb.ids (2024.03.18-1) ... 395s Setting up sudo (1.9.15p5-3ubuntu3) ... 395s Setting up fonts-dejavu-core (2.37-8) ... 395s Setting up dhcpcd-base (1:10.0.6-1ubuntu2) ... 395s Setting up gir1.2-glib-2.0:ppc64el (2.79.3-3ubuntu5) ... 395s Setting up libk5crypto3:ppc64el (1.20.1-6ubuntu1) ... 395s Setting up libjpeg-turbo8:ppc64el (2.1.5-2ubuntu1) ... 395s Setting up logsave (1.47.0-2.4~exp1ubuntu2) ... 395s Setting up libwebp7:ppc64el (1.3.2-0.4build2) ... 395s Setting up libfdisk1:ppc64el (2.39.3-9ubuntu2) ... 395s Setting up libdb5.3t64:ppc64el (5.3.28+dfsg2-6) ... 395s Setting up libdevmapper1.02.1:ppc64el (2:1.02.185-3ubuntu2) ... 395s Setting up libaio1t64:ppc64el (0.3.113-6) ... 395s Setting up python-apt-common (2.7.7) ... 395s Setting up mount (2.39.3-9ubuntu2) ... 395s Setting up dmsetup (2:1.02.185-3ubuntu2) ... 395s Setting up uuid-runtime (2.39.3-9ubuntu2) ... 396s uuidd.service is a disabled or a static unit not running, not starting it. 396s Setting up libmm-glib0:ppc64el (1.23.4-0ubuntu1) ... 396s Setting up groff-base (1.23.0-3build1) ... 396s Setting up libcrypt-dev:ppc64el (1:4.4.36-4) ... 396s Setting up libplymouth5:ppc64el (24.004.60-1ubuntu6) ... 396s Setting up dbus-session-bus-common (1.14.10-4ubuntu2) ... 396s Setting up jq (1.7.1-3) ... 396s Setting up procps (2:4.0.4-4ubuntu2) ... 397s Setting up gpgconf (2.4.4-2ubuntu15) ... 397s Setting up libcryptsetup12:ppc64el (2:2.7.0-1ubuntu2) ... 397s Setting up libgirepository-1.0-1:ppc64el (1.79.1-1ubuntu6) ... 397s Setting up libjson-glib-1.0-common (1.8.0-2build1) ... 397s Setting up libkrb5-3:ppc64el (1.20.1-6ubuntu1) ... 397s Setting up libpython3.11-minimal:ppc64el (3.11.8-1build4) ... 397s Setting up libusb-1.0-0:ppc64el (2:1.0.27-1) ... 397s Setting up libperl5.38t64:ppc64el (5.38.2-3.2) ... 397s Setting up tnftp (20230507-2build1) ... 397s Setting up dbus-system-bus-common (1.14.10-4ubuntu2) ... 397s Setting up libfido2-1:ppc64el (1.14.0-1build1) ... 397s Setting up libc-dev-bin (2.39-0ubuntu6) ... 397s Setting up openssl (3.0.13-0ubuntu2) ... 397s Setting up linux-modules-6.8.0-20-generic (6.8.0-20.20) ... 400s Setting up linux-tools-common (6.8.0-20.20) ... 400s Setting up readline-common (8.2-4) ... 400s Setting up libxml2:ppc64el (2.9.14+dfsg-1.3ubuntu2) ... 400s Setting up libxmuu1:ppc64el (2:1.1.3-3build1) ... 400s Setting up dbus-bin (1.14.10-4ubuntu2) ... 400s Setting up info (7.1-3build1) ... 400s Setting up liblocale-gettext-perl (1.07-6ubuntu4) ... 400s Setting up gpg (2.4.4-2ubuntu15) ... 400s Setting up libgudev-1.0-0:ppc64el (1:238-3ubuntu2) ... 400s Setting up libpolkit-gobject-1-0:ppc64el (124-1ubuntu1) ... 400s Setting up libbpf1:ppc64el (1:1.3.0-2build1) ... 400s Setting up libmbim-glib4:ppc64el (1.31.2-0ubuntu2) ... 400s Setting up rsync (3.2.7-1build1) ... 401s rsync.service is a disabled or a static unit not running, not starting it. 401s Setting up libudisks2-0:ppc64el (2.10.1-6) ... 401s Setting up libkmod2:ppc64el (31+20240202-2ubuntu4) ... 401s Setting up bolt (0.9.6-2build1) ... 401s bolt.service is a disabled or a static unit not running, not starting it. 401s Setting up libllvm18:ppc64el (1:18.1.2-1ubuntu2) ... 401s Setting up gnupg-utils (2.4.4-2ubuntu15) ... 401s Setting up initramfs-tools-bin (0.142ubuntu23) ... 401s Setting up libjpeg8:ppc64el (8c-2ubuntu11) ... 401s Setting up cryptsetup-bin (2:2.7.0-1ubuntu2) ... 401s Setting up python3.11-minimal (3.11.8-1build4) ... 403s Setting up libclang1-18 (1:18.1.2-1ubuntu2) ... 403s Setting up manpages-dev (6.05.01-1) ... 403s Setting up linux-modules-extra-6.8.0-20-generic (6.8.0-20.20) ... 405s Setting up apt-utils (2.7.14) ... 405s Setting up gpg-agent (2.4.4-2ubuntu15) ... 405s Setting up libpython3.12-stdlib:ppc64el (3.12.2-4build3) ... 405s Setting up wget (1.21.4-1ubuntu2) ... 405s Setting up fontconfig-config (2.15.0-1.1ubuntu1) ... 405s Setting up libxmlb2:ppc64el (0.3.15-1build1) ... 405s Setting up libpython3.11-stdlib:ppc64el (3.11.8-1build4) ... 405s Setting up python3.12 (3.12.2-4build3) ... 407s Setting up gpgsm (2.4.4-2ubuntu15) ... 407s Setting up inetutils-telnet (2:2.5-3ubuntu3) ... 407s Setting up libreiserfscore0t64 (1:3.6.27-7.1) ... 407s Setting up e2fsprogs (1.47.0-2.4~exp1ubuntu2) ... 407s update-initramfs: deferring update (trigger activated) 408s e2scrub_all.service is a disabled or a static unit not running, not starting it. 408s Setting up linux-tools-6.8.0-20 (6.8.0-20.20) ... 408s Setting up libparted2t64:ppc64el (3.6-3.1build2) ... 408s Setting up linux-headers-generic (6.8.0-20.20+1) ... 408s Setting up dbus-daemon (1.14.10-4ubuntu2) ... 408s Setting up libmbim-proxy (1.31.2-0ubuntu2) ... 408s Setting up vim-tiny (2:9.1.0016-1ubuntu6) ... 408s Setting up kmod (31+20240202-2ubuntu4) ... 408s Setting up libnetplan1:ppc64el (1.0-1) ... 408s Setting up man-db (2.12.0-3build4) ... 408s Updating database of manual pages ... 411s man-db.service is a disabled or a static unit not running, not starting it. 411s Setting up fdisk (2.39.3-9ubuntu2) ... 411s Setting up libjson-glib-1.0-0:ppc64el (1.8.0-2build1) ... 411s Setting up libsasl2-modules-db:ppc64el (2.1.28+dfsg1-5ubuntu1) ... 411s Setting up libftdi1-2:ppc64el (1.5-6build4) ... 411s Setting up perl (5.38.2-3.2) ... 411s Setting up libfreetype6:ppc64el (2.13.2+dfsg-1build2) ... 411s Setting up linux-tools-6.8.0-20-generic (6.8.0-20.20) ... 411s Setting up gir1.2-girepository-2.0:ppc64el (1.79.1-1ubuntu6) ... 411s Setting up dbus (1.14.10-4ubuntu2) ... 411s A reboot is required to replace the running dbus-daemon. 411s Please reboot the system when convenient. 412s Setting up shared-mime-info (2.4-1build1) ... 412s Setting up libblockdev-utils3:ppc64el (3.1.0-1build1) ... 412s Setting up libgssapi-krb5-2:ppc64el (1.20.1-6ubuntu1) ... 412s Setting up udev (255.4-1ubuntu5) ... 413s Setting up ftp (20230507-2build1) ... 413s Setting up keyboxd (2.4.4-2ubuntu15) ... 413s Setting up libdpkg-perl (1.22.6ubuntu5) ... 413s Setting up libsasl2-2:ppc64el (2.1.28+dfsg1-5ubuntu1) ... 413s Setting up libssh-4:ppc64el (0.10.6-2build1) ... 413s Setting up libblockdev-nvme3:ppc64el (3.1.0-1build1) ... 413s Setting up libblockdev-fs3:ppc64el (3.1.0-1build1) ... 413s Setting up ieee-data (20220827.1) ... 413s Setting up libtiff6:ppc64el (4.5.1+git230720-4ubuntu1) ... 413s Setting up kpartx (0.9.4-5ubuntu6) ... 413s Setting up libpam-systemd:ppc64el (255.4-1ubuntu5) ... 413s Setting up libpolkit-agent-1-0:ppc64el (124-1ubuntu1) ... 413s Setting up libc6-dev:ppc64el (2.39-0ubuntu6) ... 413s Setting up libgpgme11t64:ppc64el (1.18.0-4.1ubuntu3) ... 413s Setting up libfontconfig1:ppc64el (2.15.0-1.1ubuntu1) ... 413s Setting up netplan-generator (1.0-1) ... 413s Removing 'diversion of /lib/systemd/system-generators/netplan to /lib/systemd/system-generators/netplan.usr-is-merged by netplan-generator' 413s Setting up initramfs-tools-core (0.142ubuntu23) ... 413s Setting up libclang-cpp18 (1:18.1.2-1ubuntu2) ... 413s Setting up libbpfcc:ppc64el (0.29.1+ds-1ubuntu4) ... 413s Setting up libarchive13t64:ppc64el (3.7.2-1.1ubuntu2) ... 413s Setting up libldap2:ppc64el (2.6.7+dfsg-1~exp1ubuntu6) ... 413s Setting up libpython3-stdlib:ppc64el (3.12.2-0ubuntu1) ... 413s Setting up systemd-resolved (255.4-1ubuntu5) ... 414s Setting up python3.11 (3.11.8-1build4) ... 416s Setting up telnet (0.17+2.5-3ubuntu3) ... 416s Setting up initramfs-tools (0.142ubuntu23) ... 416s update-initramfs: deferring update (trigger activated) 416s Setting up libblockdev-mdraid3:ppc64el (3.1.0-1build1) ... 416s Setting up linux-headers-virtual (6.8.0-20.20+1) ... 416s Setting up libcurl4t64:ppc64el (8.5.0-2ubuntu8) ... 416s Setting up bpftrace (0.20.2-1ubuntu1) ... 416s Setting up bind9-libs:ppc64el (1:9.18.24-0ubuntu3) ... 416s Setting up linux-image-6.8.0-20-generic (6.8.0-20.20) ... 418s I: /boot/vmlinux is now a symlink to vmlinux-6.8.0-20-generic 418s I: /boot/initrd.img is now a symlink to initrd.img-6.8.0-20-generic 418s Setting up libtirpc3t64:ppc64el (1.3.4+ds-1.1) ... 418s Setting up e2fsprogs-l10n (1.47.0-2.4~exp1ubuntu2) ... 418s Setting up libblockdev-swap3:ppc64el (3.1.0-1build1) ... 418s Setting up plymouth (24.004.60-1ubuntu6) ... 418s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 418s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 425s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 425s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 426s Setting up iproute2 (6.1.0-1ubuntu5) ... 426s Setting up openssh-client (1:9.6p1-3ubuntu11) ... 426s Setting up libgusb2:ppc64el (0.4.8-1build1) ... 426s Setting up btrfs-progs (6.6.3-1.1build1) ... 426s Setting up libblockdev-loop3:ppc64el (3.1.0-1build1) ... 426s Setting up libcurl3t64-gnutls:ppc64el (8.5.0-2ubuntu8) ... 426s Setting up parted (3.6-3.1build2) ... 426s Setting up libqmi-glib5:ppc64el (1.35.2-0ubuntu1) ... 426s Setting up python3 (3.12.2-0ubuntu1) ... 426s Setting up libblockdev3:ppc64el (3.1.0-1build1) ... 426s Setting up libjcat1:ppc64el (0.2.0-2build2) ... 426s Setting up multipath-tools (0.9.4-5ubuntu6) ... 427s Setting up dpkg-dev (1.22.6ubuntu5) ... 427s Setting up libblockdev-part3:ppc64el (3.1.0-1build1) ... 427s Setting up dirmngr (2.4.4-2ubuntu15) ... 427s Setting up dbus-user-session (1.14.10-4ubuntu2) ... 427s Setting up plymouth-theme-ubuntu-text (24.004.60-1ubuntu6) ... 427s update-initramfs: deferring update (trigger activated) 427s Setting up python3-cryptography (41.0.7-4build2) ... 428s Setting up python3-gi (3.47.0-3build1) ... 428s Setting up libgd3:ppc64el (2.3.3-9ubuntu3) ... 428s Setting up python3-typing-extensions (4.10.0-1) ... 428s Setting up lsof (4.95.0-1build2) ... 428s Setting up python3-pyrsistent:ppc64el (0.20.0-1build1) ... 428s Setting up python3-netaddr (0.8.0-2ubuntu1) ... 428s Setting up libnsl2:ppc64el (1.3.0-3build2) ... 428s Setting up gnupg (2.4.4-2ubuntu15) ... 428s Setting up python3-netplan (1.0-1) ... 428s Setting up curl (8.5.0-2ubuntu8) ... 428s Setting up libvolume-key1:ppc64el (0.3.12-7build1) ... 428s Setting up linux-image-virtual (6.8.0-20.20+1) ... 429s Setting up bind9-host (1:9.18.24-0ubuntu3) ... 429s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ... 429s Setting up python3-bpfcc (0.29.1+ds-1ubuntu4) ... 429s Setting up libc-devtools (2.39-0ubuntu6) ... 429s Setting up python3-pkg-resources (68.1.2-2ubuntu1) ... 429s Setting up python3-distutils (3.12.2-3ubuntu1.1) ... 430s python3.12: can't get files for byte-compilation 430s Setting up openssh-sftp-server (1:9.6p1-3ubuntu11) ... 430s Setting up linux-image-generic (6.8.0-20.20+1) ... 430s Setting up python3-dbus (1.3.2-5build2) ... 430s Setting up python3-setuptools (68.1.2-2ubuntu1) ... 430s Setting up gpg-wks-client (2.4.4-2ubuntu15) ... 430s Setting up openssh-server (1:9.6p1-3ubuntu11) ... 431s Replacing config file /etc/ssh/sshd_config with new version 433s Created symlink /etc/systemd/system/ssh.service.requires/ssh.socket → /usr/lib/systemd/system/ssh.socket. 434s Setting up linux-generic (6.8.0-20.20+1) ... 434s Setting up libblockdev-crypto3:ppc64el (3.1.0-1build1) ... 434s Setting up python3-gdbm:ppc64el (3.12.2-3ubuntu1.1) ... 434s Setting up python3-apt (2.7.7) ... 434s Setting up libfwupd2:ppc64el (1.9.15-2) ... 434s Setting up python3-yaml (6.0.1-2build1) ... 434s Setting up libqmi-proxy (1.35.2-0ubuntu1) ... 434s Setting up netplan.io (1.0-1) ... 434s Setting up linux-virtual (6.8.0-20.20+1) ... 434s Setting up grub-common (2.12-1ubuntu5) ... 435s Setting up bpfcc-tools (0.29.1+ds-1ubuntu4) ... 435s Setting up bind9-dnsutils (1:9.18.24-0ubuntu3) ... 435s Setting up ubuntu-pro-client (31.2.2) ... 437s Setting up fwupd (1.9.15-2) ... 438s fwupd-offline-update.service is a disabled or a static unit not running, not starting it. 438s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 438s fwupd.service is a disabled or a static unit not running, not starting it. 438s Setting up ubuntu-pro-client-l10n (31.2.2) ... 438s Setting up udisks2 (2.10.1-6) ... 438s Setting up grub2-common (2.12-1ubuntu5) ... 438s Setting up grub-ieee1275-bin (2.12-1ubuntu5) ... 438s Setting up grub-ieee1275 (2.12-1ubuntu5) ... 439s Installing for powerpc-ieee1275 platform. 439s Installation finished. No error reported. 439s Sourcing file `/etc/default/grub' 439s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 439s Generating grub configuration file ... 439s Found linux image: /boot/vmlinux-6.8.0-20-generic 439s Found linux image: /boot/vmlinux-6.8.0-11-generic 439s Found initrd image: /boot/initrd.img-6.8.0-11-generic 439s Warning: os-prober will not be executed to detect other bootable partitions. 439s Systems on them will not be added to the GRUB boot configuration. 439s Check GRUB_DISABLE_OS_PROBER documentation entry. 439s Adding boot menu entry for UEFI Firmware Settings ... 439s done 439s Processing triggers for ufw (0.36.2-5) ... 440s Processing triggers for systemd (255.4-1ubuntu5) ... 440s Processing triggers for debianutils (5.17) ... 440s Processing triggers for install-info (7.1-3build1) ... 440s Processing triggers for libc-bin (2.39-0ubuntu6) ... 440s Processing triggers for initramfs-tools (0.142ubuntu23) ... 440s update-initramfs: Generating /boot/initrd.img-6.8.0-11-generic 440s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 446s Processing triggers for linux-image-6.8.0-20-generic (6.8.0-20.20) ... 446s /etc/kernel/postinst.d/initramfs-tools: 446s update-initramfs: Generating /boot/initrd.img-6.8.0-20-generic 446s W: No lz4 in /usr/bin:/sbin:/bin, using gzip 453s /etc/kernel/postinst.d/zz-update-grub: 453s Sourcing file `/etc/default/grub' 453s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 453s Generating grub configuration file ... 453s Found linux image: /boot/vmlinux-6.8.0-20-generic 453s Found initrd image: /boot/initrd.img-6.8.0-20-generic 453s Found linux image: /boot/vmlinux-6.8.0-11-generic 453s Found initrd image: /boot/initrd.img-6.8.0-11-generic 453s Warning: os-prober will not be executed to detect other bootable partitions. 453s Systems on them will not be added to the GRUB boot configuration. 453s Check GRUB_DISABLE_OS_PROBER documentation entry. 453s Adding boot menu entry for UEFI Firmware Settings ... 453s done 455s Reading package lists... 455s Building dependency tree... 455s Reading state information... 455s The following packages will be REMOVED: 455s libaio1* libnetplan0* python3-distutils* python3-lib2to3* 455s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 455s After this operation, 1613 kB disk space will be freed. 455s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 112169 files and directories currently installed.) 455s Removing libaio1:ppc64el (0.3.113-5) ... 455s Removing libnetplan0:ppc64el (0.107.1-3) ... 455s Removing python3-distutils (3.12.2-3ubuntu1.1) ... 455s Removing python3-lib2to3 (3.12.2-3ubuntu1.1) ... 455s Processing triggers for libc-bin (2.39-0ubuntu6) ... 456s autopkgtest [12:01:12]: rebooting testbed after setup commands that affected boot 623s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 634s autopkgtest [12:04:10]: testbed running kernel: Linux 6.8.0-20-generic #20-Ubuntu SMP Mon Mar 18 11:46:05 UTC 2024 637s autopkgtest [12:04:13]: @@@@@@@@@@@@@@@@@@@@ apt-source bcftools 641s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe bcftools 1.19-1build1 (dsc) [2260 B] 641s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe bcftools 1.19-1build1 (tar) [3540 kB] 641s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe bcftools 1.19-1build1 (diff) [11.2 kB] 641s gpgv: Signature made Fri Mar 22 15:49:59 2024 UTC 641s gpgv: using RSA key 4FB588A84C2DDE79A74C77876FA458DD1DB03F71 641s gpgv: issuer "juliank@ubuntu.com" 641s gpgv: Can't check signature: No public key 641s dpkg-source: warning: cannot verify inline signature for ./bcftools_1.19-1build1.dsc: no acceptable signature found 641s autopkgtest [12:04:17]: testing package bcftools version 1.19-1build1 641s autopkgtest [12:04:17]: build not needed 681s autopkgtest [12:04:57]: test command1: preparing testbed 686s Reading package lists... 687s Building dependency tree... 687s Reading state information... 687s Starting pkgProblemResolver with broken count: 0 687s Starting 2 pkgProblemResolver with broken count: 0 687s Done 687s The following additional packages will be installed: 687s bcftools libhts3t64 libhtscodecs2 tabix 687s Suggested packages: 687s python3-numpy python3-matplotlib texlive-latex-recommended 687s The following NEW packages will be installed: 687s autopkgtest-satdep bcftools libhts3t64 libhtscodecs2 tabix 687s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 687s Need to get 2367 kB/2368 kB of archives. 687s After this operation, 10.4 MB of additional disk space will be used. 687s Get:1 /tmp/autopkgtest.mS6ftt/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B] 687s Get:2 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB] 688s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el libhts3t64 ppc64el 1.19+ds-1.1build2 [569 kB] 688s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el bcftools ppc64el 1.19-1build1 [979 kB] 688s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el tabix ppc64el 1.19+ds-1.1build2 [710 kB] 689s Fetched 2367 kB in 1s (1699 kB/s) 689s Selecting previously unselected package libhtscodecs2:ppc64el. 689s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 111945 files and directories currently installed.) 689s Preparing to unpack .../libhtscodecs2_1.6.0-1_ppc64el.deb ... 689s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ... 689s Selecting previously unselected package libhts3t64:ppc64el. 689s Preparing to unpack .../libhts3t64_1.19+ds-1.1build2_ppc64el.deb ... 689s Unpacking libhts3t64:ppc64el (1.19+ds-1.1build2) ... 689s Selecting previously unselected package bcftools. 689s Preparing to unpack .../bcftools_1.19-1build1_ppc64el.deb ... 689s Unpacking bcftools (1.19-1build1) ... 689s Selecting previously unselected package tabix. 689s Preparing to unpack .../tabix_1.19+ds-1.1build2_ppc64el.deb ... 689s Unpacking tabix (1.19+ds-1.1build2) ... 689s Selecting previously unselected package autopkgtest-satdep. 689s Preparing to unpack .../1-autopkgtest-satdep.deb ... 689s Unpacking autopkgtest-satdep (0) ... 689s Setting up libhtscodecs2:ppc64el (1.6.0-1) ... 689s Setting up libhts3t64:ppc64el (1.19+ds-1.1build2) ... 689s Setting up tabix (1.19+ds-1.1build2) ... 689s Setting up bcftools (1.19-1build1) ... 689s Setting up autopkgtest-satdep (0) ... 689s Processing triggers for man-db (2.12.0-3build4) ... 690s Processing triggers for libc-bin (2.39-0ubuntu6) ... 693s (Reading database ... 112031 files and directories currently installed.) 693s Removing autopkgtest-satdep (0) ... 694s autopkgtest [12:05:10]: test command1: mv -f bcftools bcftools.orig || /bin/true; ln -s /usr/bin/bcftools bcftools && ./test/test.pl --exec bgzip=/usr/bin/bgzip --exec tabix=/usr/bin/tabix && mv -f bcftools.orig bcftools || /bin/true 694s autopkgtest [12:05:10]: test command1: [----------------------- 694s mv: cannot stat 'bcftools': No such file or directory 694s ./test/test.pl: module IO::Pty not found; skipping usage tests 694s test_usage: 694s bcftools 694s test_tabix: 694s /usr/bin/tabix /tmp/R6lXcFh65m/merge.a.vcf.gz 2:3199812-3199812 695s .. ok 695s 695s test_tabix: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/merge.a.bcf 2:3199812-3199812 695s .. ok 695s 695s test_tabix: 695s /usr/bin/tabix /tmp/R6lXcFh65m/merge.a.vcf.gz 1:3000151-3000151 695s .. ok 695s 695s test_tabix: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/merge.a.bcf 1:3000151-3000151 695s .. ok 695s 695s test_index: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/large_chrom_csi_limit.vcf.gz chr20:1-2147483647 695s .. ok 695s 695s test_index: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/large_chrom_csi_limit.bcf chr20:1-2147483647 695s .. ok 695s 695s test_index: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/large_chrom_csi_limit.bcf chr20:1-2147483647 695s .. ok 695s 695s test_index: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/large_chrom_csi_limit.vcf.gz chr20:1-2147483647 695s .. ok 695s 695s test_index: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/large_chrom_csi_limit.bcf chr20:1-2147483647 695s .. ok 695s 695s test_index: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/large_chrom_csi_limit.vcf.gz chr20 695s .. ok 695s 695s test_index: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/large_chrom_csi_limit.bcf chr20 695s .. ok 695s 695s test_index: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/large_chrom_csi_limit.bcf chr20 695s .. ok 695s 695s test_index: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/large_chrom_csi_limit.vcf.gz chr20 695s .. ok 695s 695s test_index: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H /tmp/R6lXcFh65m/large_chrom_csi_limit.bcf chr20 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -s /tmp/R6lXcFh65m/idx.vcf.gz 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -s /tmp/R6lXcFh65m/idx.vcf.gz 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -s /tmp/R6lXcFh65m/idx.bcf 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -n /tmp/R6lXcFh65m/idx.vcf.gz 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -n /tmp/R6lXcFh65m/idx.vcf.gz 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -n /tmp/R6lXcFh65m/idx.vcf.gz.csi 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -n /tmp/R6lXcFh65m/idx.bcf 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -n /tmp/R6lXcFh65m/idx.bcf.csi 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -s /tmp/R6lXcFh65m/empty.vcf.gz 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -s /tmp/R6lXcFh65m/empty.vcf.gz 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -s /tmp/R6lXcFh65m/empty.bcf 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -n /tmp/R6lXcFh65m/empty.vcf.gz 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -n /tmp/R6lXcFh65m/empty.vcf.gz 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -n /tmp/R6lXcFh65m/empty.vcf.gz.csi 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -n /tmp/R6lXcFh65m/empty.bcf 695s .. ok 695s 695s test_vcf_idxstats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools index -n /tmp/R6lXcFh65m/empty.bcf.csi 695s .. ok 695s 695s test_vcf_check: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools stats -s - /tmp/R6lXcFh65m/check.vcf.gz | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID ' 695s .. ok 695s 695s test_vcf_check: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/check.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools stats -s - | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID ' 695s .. ok 695s 695s test_vcf_check_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/misc/plot-vcfstats -m /tmp/R6lXcFh65m/check.1.chk /tmp/R6lXcFh65m/check.2.chk /tmp/R6lXcFh65m/check.3.chk /tmp/R6lXcFh65m/check.4.chk | grep -v 'plot-vcfstats' | grep -v '^# The command' | grep -v '^# This' | grep -v '^ID ' 695s .. ok 695s 695s test_vcf_stats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools stats -s - /tmp/R6lXcFh65m/stats.a.vcf.gz /tmp/R6lXcFh65m/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID ' 695s .. ok 695s 695s test_vcf_stats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools stats -s B /tmp/R6lXcFh65m/stats.a.vcf.gz /tmp/R6lXcFh65m/stats.b.vcf.gz | grep -v '^#' | grep -v '^ID ' 695s .. ok 695s 695s test_vcf_stats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools stats -s - /tmp/R6lXcFh65m/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID ' 695s .. ok 695s 695s test_vcf_stats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools stats -s - -i 'type="snp"' /tmp/R6lXcFh65m/stats.counts.vcf.gz | grep -v '^#' | grep -v '^ID ' 695s .. ok 695s 695s test_vcf_stats: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools stats -s - /tmp/R6lXcFh65m/stats.vaf.vcf.gz | grep -v '^#' | grep -v '^ID ' 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -n =2 /tmp/R6lXcFh65m/isec.a.vcf.gz /tmp/R6lXcFh65m/isec.b.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -Ob -n =2 /tmp/R6lXcFh65m/isec.a.vcf.gz /tmp/R6lXcFh65m/isec.b.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -n =2 -i"STRLEN(REF)==2" /tmp/R6lXcFh65m/isec.a.vcf.gz /tmp/R6lXcFh65m/isec.b.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -Ob -n =2 -i"STRLEN(REF)==2" /tmp/R6lXcFh65m/isec.a.vcf.gz /tmp/R6lXcFh65m/isec.b.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -n =2 -c both /tmp/R6lXcFh65m/isec.a.vcf.gz /tmp/R6lXcFh65m/isec.b.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -Ob -n =2 -c both /tmp/R6lXcFh65m/isec.a.vcf.gz /tmp/R6lXcFh65m/isec.b.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -n =2 -c any /tmp/R6lXcFh65m/isec.a.vcf.gz /tmp/R6lXcFh65m/isec.b.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -Ob -n =2 -c any /tmp/R6lXcFh65m/isec.a.vcf.gz /tmp/R6lXcFh65m/isec.b.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -C -c any /tmp/R6lXcFh65m/isec.a.vcf.gz /tmp/R6lXcFh65m/isec.b.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -Ob -C -c any /tmp/R6lXcFh65m/isec.a.vcf.gz /tmp/R6lXcFh65m/isec.b.vcf.gz 695s .. ok 695s 695s test_vcf_isec2: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec --no-version -T /tmp/R6lXcFh65m/isec.tab.gz /tmp/R6lXcFh65m/isec.a.vcf.gz 695s .. ok 695s 695s test_vcf_isec2: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -Ob -T /tmp/R6lXcFh65m/isec.tab.gz /tmp/R6lXcFh65m/isec.a.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/R6lXcFh65m/isec-miss.1.1.vcf.gz /tmp/R6lXcFh65m/isec-miss.1.2.vcf.gz /tmp/R6lXcFh65m/isec-miss.1.3.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -Ob -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/R6lXcFh65m/isec-miss.1.1.vcf.gz /tmp/R6lXcFh65m/isec-miss.1.2.vcf.gz /tmp/R6lXcFh65m/isec-miss.1.3.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -R /tmp/autopkgtest.mS6ftt/build.qze/src/test/isec-miss.1.regs.txt -n +1 /tmp/R6lXcFh65m/isec-miss.1.1.vcf.gz /tmp/R6lXcFh65m/isec-miss.1.2.vcf.gz /tmp/R6lXcFh65m/isec-miss.1.3.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -Ob -R /tmp/autopkgtest.mS6ftt/build.qze/src/test/isec-miss.1.regs.txt -n +1 /tmp/R6lXcFh65m/isec-miss.1.1.vcf.gz /tmp/R6lXcFh65m/isec-miss.1.2.vcf.gz /tmp/R6lXcFh65m/isec-miss.1.3.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/R6lXcFh65m/isec-miss.2.1.vcf.gz /tmp/R6lXcFh65m/isec-miss.2.2.vcf.gz /tmp/R6lXcFh65m/isec-miss.2.3.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -Ob -n +1 -r 20:100,20:140,12:55,20:140,20:100 /tmp/R6lXcFh65m/isec-miss.2.1.vcf.gz /tmp/R6lXcFh65m/isec-miss.2.2.vcf.gz /tmp/R6lXcFh65m/isec-miss.2.3.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -R /tmp/autopkgtest.mS6ftt/build.qze/src/test/isec-miss.1.regs.txt -n +1 /tmp/R6lXcFh65m/isec-miss.2.1.vcf.gz /tmp/R6lXcFh65m/isec-miss.2.2.vcf.gz /tmp/R6lXcFh65m/isec-miss.2.3.vcf.gz 695s .. ok 695s 695s test_vcf_isec: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools isec -Ob -R /tmp/autopkgtest.mS6ftt/build.qze/src/test/isec-miss.1.regs.txt -n +1 /tmp/R6lXcFh65m/isec-miss.2.1.vcf.gz /tmp/R6lXcFh65m/isec-miss.2.2.vcf.gz /tmp/R6lXcFh65m/isec-miss.2.3.vcf.gz 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -i AF:join /tmp/R6lXcFh65m/merge.join.a.vcf.gz /tmp/R6lXcFh65m/merge.join.b.vcf.gz 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -i AF:join /tmp/R6lXcFh65m/merge.join.a.vcf.gz /tmp/R6lXcFh65m/merge.join.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -i AF:join /tmp/R6lXcFh65m/merge.join.a.bcf /tmp/R6lXcFh65m/merge.join.b.bcf 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -i AF:join /tmp/R6lXcFh65m/merge.join.a.bcf /tmp/R6lXcFh65m/merge.join.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -L 1 /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -L 1 /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -L 1 /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -L 2 /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -L 2 /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -L 2 /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -L 3 /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -L 3 /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -L 3 /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -L 4 /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -L 4 /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -L 4 /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -L 5 /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/R6lXcFh65m/merge.LPL.a.vcf.gz /tmp/R6lXcFh65m/merge.LPL.b.vcf.gz /tmp/R6lXcFh65m/merge.LPL.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -L 5 /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -L 5 /tmp/R6lXcFh65m/merge.LPL.a.bcf /tmp/R6lXcFh65m/merge.LPL.b.bcf /tmp/R6lXcFh65m/merge.LPL.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples /tmp/R6lXcFh65m/merge.a.vcf.gz /tmp/R6lXcFh65m/merge.b.vcf.gz /tmp/R6lXcFh65m/merge.c.vcf.gz 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples /tmp/R6lXcFh65m/merge.a.vcf.gz /tmp/R6lXcFh65m/merge.b.vcf.gz /tmp/R6lXcFh65m/merge.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples /tmp/R6lXcFh65m/merge.a.bcf /tmp/R6lXcFh65m/merge.b.bcf /tmp/R6lXcFh65m/merge.c.bcf 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples /tmp/R6lXcFh65m/merge.a.bcf /tmp/R6lXcFh65m/merge.b.bcf /tmp/R6lXcFh65m/merge.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -Fx /tmp/R6lXcFh65m/merge.a.vcf.gz /tmp/R6lXcFh65m/merge.b.vcf.gz /tmp/R6lXcFh65m/merge.c.vcf.gz 695s .. ok 695s 695s test_vcf_merge: 695s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -Fx /tmp/R6lXcFh65m/merge.a.vcf.gz /tmp/R6lXcFh65m/merge.b.vcf.gz /tmp/R6lXcFh65m/merge.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -Fx /tmp/R6lXcFh65m/merge.a.bcf /tmp/R6lXcFh65m/merge.b.bcf /tmp/R6lXcFh65m/merge.c.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -Fx /tmp/R6lXcFh65m/merge.a.bcf /tmp/R6lXcFh65m/merge.b.bcf /tmp/R6lXcFh65m/merge.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -0 /tmp/R6lXcFh65m/merge.a.vcf.gz /tmp/R6lXcFh65m/merge.b.vcf.gz /tmp/R6lXcFh65m/merge.c.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -0 /tmp/R6lXcFh65m/merge.a.vcf.gz /tmp/R6lXcFh65m/merge.b.vcf.gz /tmp/R6lXcFh65m/merge.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -0 /tmp/R6lXcFh65m/merge.a.bcf /tmp/R6lXcFh65m/merge.b.bcf /tmp/R6lXcFh65m/merge.c.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -0 /tmp/R6lXcFh65m/merge.a.bcf /tmp/R6lXcFh65m/merge.b.bcf /tmp/R6lXcFh65m/merge.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -m none /tmp/R6lXcFh65m/merge.2.a.vcf.gz /tmp/R6lXcFh65m/merge.2.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -m none /tmp/R6lXcFh65m/merge.2.a.vcf.gz /tmp/R6lXcFh65m/merge.2.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -m none /tmp/R6lXcFh65m/merge.2.a.bcf /tmp/R6lXcFh65m/merge.2.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -m none /tmp/R6lXcFh65m/merge.2.a.bcf /tmp/R6lXcFh65m/merge.2.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -m both /tmp/R6lXcFh65m/merge.2.a.vcf.gz /tmp/R6lXcFh65m/merge.2.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -m both /tmp/R6lXcFh65m/merge.2.a.vcf.gz /tmp/R6lXcFh65m/merge.2.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -m both /tmp/R6lXcFh65m/merge.2.a.bcf /tmp/R6lXcFh65m/merge.2.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -m both /tmp/R6lXcFh65m/merge.2.a.bcf /tmp/R6lXcFh65m/merge.2.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -m all /tmp/R6lXcFh65m/merge.2.a.vcf.gz /tmp/R6lXcFh65m/merge.2.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -m all /tmp/R6lXcFh65m/merge.2.a.vcf.gz /tmp/R6lXcFh65m/merge.2.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -m all /tmp/R6lXcFh65m/merge.2.a.bcf /tmp/R6lXcFh65m/merge.2.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -m all /tmp/R6lXcFh65m/merge.2.a.bcf /tmp/R6lXcFh65m/merge.2.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/R6lXcFh65m/merge.3.a.vcf.gz /tmp/R6lXcFh65m/merge.3.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/R6lXcFh65m/merge.3.a.vcf.gz /tmp/R6lXcFh65m/merge.3.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -i TR:sum,TA:sum,TG:sum /tmp/R6lXcFh65m/merge.3.a.bcf /tmp/R6lXcFh65m/merge.3.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -i TR:sum,TA:sum,TG:sum /tmp/R6lXcFh65m/merge.3.a.bcf /tmp/R6lXcFh65m/merge.3.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -m id /tmp/R6lXcFh65m/merge.4.a.vcf.gz /tmp/R6lXcFh65m/merge.4.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -m id /tmp/R6lXcFh65m/merge.4.a.vcf.gz /tmp/R6lXcFh65m/merge.4.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples -m id /tmp/R6lXcFh65m/merge.4.a.bcf /tmp/R6lXcFh65m/merge.4.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples -m id /tmp/R6lXcFh65m/merge.4.a.bcf /tmp/R6lXcFh65m/merge.4.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/gvcf.merge.1.vcf.gz /tmp/R6lXcFh65m/gvcf.merge.2.vcf.gz /tmp/R6lXcFh65m/gvcf.merge.3.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/gvcf.merge.1.vcf.gz /tmp/R6lXcFh65m/gvcf.merge.2.vcf.gz /tmp/R6lXcFh65m/gvcf.merge.3.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/gvcf.merge.1.bcf /tmp/R6lXcFh65m/gvcf.merge.2.bcf /tmp/R6lXcFh65m/gvcf.merge.3.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/gvcf.merge.1.bcf /tmp/R6lXcFh65m/gvcf.merge.2.bcf /tmp/R6lXcFh65m/gvcf.merge.3.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.2.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.c.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.2.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - -m both,* /tmp/R6lXcFh65m/merge.gvcf.2.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.c.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - -m both,* /tmp/R6lXcFh65m/merge.gvcf.2.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - -m both,** /tmp/R6lXcFh65m/merge.gvcf.2.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.c.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - -m both,** /tmp/R6lXcFh65m/merge.gvcf.2.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.2.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - -i SRC:join /tmp/R6lXcFh65m/merge.gvcf.3.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.3.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - -i SRC:join /tmp/R6lXcFh65m/merge.gvcf.3.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.3.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.4.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.4.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.4.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.4.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.4.a.bcf /tmp/R6lXcFh65m/merge.gvcf.4.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.4.a.bcf /tmp/R6lXcFh65m/merge.gvcf.4.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.5.a.vcf.gz /tmp/R6lXcFh65m/merge.5.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.5.a.vcf.gz /tmp/R6lXcFh65m/merge.5.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.5.a.bcf /tmp/R6lXcFh65m/merge.5.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.5.a.bcf /tmp/R6lXcFh65m/merge.5.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.6.a.vcf.gz /tmp/R6lXcFh65m/merge.6.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.6.a.vcf.gz /tmp/R6lXcFh65m/merge.6.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.6.a.bcf /tmp/R6lXcFh65m/merge.6.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.6.a.bcf /tmp/R6lXcFh65m/merge.6.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.7.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.7.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.7.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.7.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.7.a.bcf /tmp/R6lXcFh65m/merge.gvcf.7.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.7.a.bcf /tmp/R6lXcFh65m/merge.gvcf.7.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.8.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.8.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.8.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.8.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.8.a.bcf /tmp/R6lXcFh65m/merge.gvcf.8.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.8.a.bcf /tmp/R6lXcFh65m/merge.gvcf.8.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples /tmp/R6lXcFh65m/merge.7.a.vcf.gz /tmp/R6lXcFh65m/merge.7.b.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples /tmp/R6lXcFh65m/merge.7.a.vcf.gz /tmp/R6lXcFh65m/merge.7.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --force-samples /tmp/R6lXcFh65m/merge.7.a.bcf /tmp/R6lXcFh65m/merge.7.b.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --force-samples /tmp/R6lXcFh65m/merge.7.a.bcf /tmp/R6lXcFh65m/merge.7.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa /tmp/R6lXcFh65m/merge.gvcf.9a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9c.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9d.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa /tmp/R6lXcFh65m/merge.gvcf.9a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9c.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9d.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa /tmp/R6lXcFh65m/merge.gvcf.9a.bcf /tmp/R6lXcFh65m/merge.gvcf.9b.bcf /tmp/R6lXcFh65m/merge.gvcf.9c.bcf /tmp/R6lXcFh65m/merge.gvcf.9d.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa /tmp/R6lXcFh65m/merge.gvcf.9a.bcf /tmp/R6lXcFh65m/merge.gvcf.9b.bcf /tmp/R6lXcFh65m/merge.gvcf.9c.bcf /tmp/R6lXcFh65m/merge.gvcf.9d.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa -r 22:21-23 /tmp/R6lXcFh65m/merge.gvcf.9a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9c.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9d.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa -r 22:21-23 /tmp/R6lXcFh65m/merge.gvcf.9a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9c.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9d.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa -r 22:21-23 /tmp/R6lXcFh65m/merge.gvcf.9a.bcf /tmp/R6lXcFh65m/merge.gvcf.9b.bcf /tmp/R6lXcFh65m/merge.gvcf.9c.bcf /tmp/R6lXcFh65m/merge.gvcf.9d.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa -r 22:21-23 /tmp/R6lXcFh65m/merge.gvcf.9a.bcf /tmp/R6lXcFh65m/merge.gvcf.9b.bcf /tmp/R6lXcFh65m/merge.gvcf.9c.bcf /tmp/R6lXcFh65m/merge.gvcf.9d.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa /tmp/R6lXcFh65m/merge.gvcf.9a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9c.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9d.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9e.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa /tmp/R6lXcFh65m/merge.gvcf.9a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9c.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9d.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9e.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa /tmp/R6lXcFh65m/merge.gvcf.9a.bcf /tmp/R6lXcFh65m/merge.gvcf.9b.bcf /tmp/R6lXcFh65m/merge.gvcf.9c.bcf /tmp/R6lXcFh65m/merge.gvcf.9d.bcf /tmp/R6lXcFh65m/merge.gvcf.9e.bcf 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa /tmp/R6lXcFh65m/merge.gvcf.9a.bcf /tmp/R6lXcFh65m/merge.gvcf.9b.bcf /tmp/R6lXcFh65m/merge.gvcf.9c.bcf /tmp/R6lXcFh65m/merge.gvcf.9d.bcf /tmp/R6lXcFh65m/merge.gvcf.9e.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa -r 22:21-23 /tmp/R6lXcFh65m/merge.gvcf.9a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9c.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9d.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9e.vcf.gz 696s .. ok 696s 696s test_vcf_merge: 696s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa -r 22:21-23 /tmp/R6lXcFh65m/merge.gvcf.9a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9c.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9d.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.9e.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 696s .. ok 696s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa -r 22:21-23 /tmp/R6lXcFh65m/merge.gvcf.9a.bcf /tmp/R6lXcFh65m/merge.gvcf.9b.bcf /tmp/R6lXcFh65m/merge.gvcf.9c.bcf /tmp/R6lXcFh65m/merge.gvcf.9d.bcf /tmp/R6lXcFh65m/merge.gvcf.9e.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa -r 22:21-23 /tmp/R6lXcFh65m/merge.gvcf.9a.bcf /tmp/R6lXcFh65m/merge.gvcf.9b.bcf /tmp/R6lXcFh65m/merge.gvcf.9c.bcf /tmp/R6lXcFh65m/merge.gvcf.9d.bcf /tmp/R6lXcFh65m/merge.gvcf.9e.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.gvcf.10.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.10.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.gvcf.10.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.10.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.gvcf.10.a.bcf /tmp/R6lXcFh65m/merge.gvcf.10.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.gvcf.10.a.bcf /tmp/R6lXcFh65m/merge.gvcf.10.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -m none /tmp/R6lXcFh65m/merge.gvcf.10.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.10.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -m none /tmp/R6lXcFh65m/merge.gvcf.10.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.10.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -m none /tmp/R6lXcFh65m/merge.gvcf.10.a.bcf /tmp/R6lXcFh65m/merge.gvcf.10.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -m none /tmp/R6lXcFh65m/merge.gvcf.10.a.bcf /tmp/R6lXcFh65m/merge.gvcf.10.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.gvcf.10.fa /tmp/R6lXcFh65m/merge.gvcf.10.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.10.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.gvcf.10.fa /tmp/R6lXcFh65m/merge.gvcf.10.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.10.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.gvcf.10.fa /tmp/R6lXcFh65m/merge.gvcf.10.a.bcf /tmp/R6lXcFh65m/merge.gvcf.10.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.gvcf.10.fa /tmp/R6lXcFh65m/merge.gvcf.10.a.bcf /tmp/R6lXcFh65m/merge.gvcf.10.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.gvcf.10.fa -m none /tmp/R6lXcFh65m/merge.gvcf.10.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.10.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.gvcf.10.fa -m none /tmp/R6lXcFh65m/merge.gvcf.10.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.10.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.gvcf.10.fa -m none /tmp/R6lXcFh65m/merge.gvcf.10.a.bcf /tmp/R6lXcFh65m/merge.gvcf.10.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.gvcf.10.fa -m none /tmp/R6lXcFh65m/merge.gvcf.10.a.bcf /tmp/R6lXcFh65m/merge.gvcf.10.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.noidx.a.vcf.gz /tmp/R6lXcFh65m/merge.noidx.b.vcf.gz /tmp/R6lXcFh65m/merge.noidx.c.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.noidx.a.vcf.gz /tmp/R6lXcFh65m/merge.noidx.b.vcf.gz /tmp/R6lXcFh65m/merge.noidx.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.noidx.a.bcf /tmp/R6lXcFh65m/merge.noidx.b.bcf /tmp/R6lXcFh65m/merge.noidx.c.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.noidx.a.bcf /tmp/R6lXcFh65m/merge.noidx.b.bcf /tmp/R6lXcFh65m/merge.noidx.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --no-index /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.noidx.a.vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.noidx.b.vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.noidx.c.vcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --no-index /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.noidx.a.vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.noidx.b.vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/merge.noidx.c.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --no-index /tmp/R6lXcFh65m/merge.noidx.a.bcf /tmp/R6lXcFh65m/merge.noidx.b.bcf /tmp/R6lXcFh65m/merge.noidx.c.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --no-index /tmp/R6lXcFh65m/merge.noidx.a.bcf /tmp/R6lXcFh65m/merge.noidx.b.bcf /tmp/R6lXcFh65m/merge.noidx.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.8.a.vcf.gz /tmp/R6lXcFh65m/merge.8.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.8.a.vcf.gz /tmp/R6lXcFh65m/merge.8.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.8.a.bcf /tmp/R6lXcFh65m/merge.8.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.8.a.bcf /tmp/R6lXcFh65m/merge.8.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -i AN:sum,AC:sum /tmp/R6lXcFh65m/merge.8.a.vcf.gz /tmp/R6lXcFh65m/merge.8.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/R6lXcFh65m/merge.8.a.vcf.gz /tmp/R6lXcFh65m/merge.8.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -i AN:sum,AC:sum /tmp/R6lXcFh65m/merge.8.a.bcf /tmp/R6lXcFh65m/merge.8.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/R6lXcFh65m/merge.8.a.bcf /tmp/R6lXcFh65m/merge.8.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.9.a.vcf.gz /tmp/R6lXcFh65m/merge.9.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.9.a.vcf.gz /tmp/R6lXcFh65m/merge.9.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version /tmp/R6lXcFh65m/merge.9.a.bcf /tmp/R6lXcFh65m/merge.9.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob /tmp/R6lXcFh65m/merge.9.a.bcf /tmp/R6lXcFh65m/merge.9.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -i AN:sum,AC:sum /tmp/R6lXcFh65m/merge.9.a.vcf.gz /tmp/R6lXcFh65m/merge.9.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/R6lXcFh65m/merge.9.a.vcf.gz /tmp/R6lXcFh65m/merge.9.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -i AN:sum,AC:sum /tmp/R6lXcFh65m/merge.9.a.bcf /tmp/R6lXcFh65m/merge.9.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -i AN:sum,AC:sum /tmp/R6lXcFh65m/merge.9.a.bcf /tmp/R6lXcFh65m/merge.9.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -m none /tmp/R6lXcFh65m/merge.10.a.vcf.gz /tmp/R6lXcFh65m/merge.10.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -m none /tmp/R6lXcFh65m/merge.10.a.vcf.gz /tmp/R6lXcFh65m/merge.10.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -m none /tmp/R6lXcFh65m/merge.10.a.bcf /tmp/R6lXcFh65m/merge.10.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -m none /tmp/R6lXcFh65m/merge.10.a.bcf /tmp/R6lXcFh65m/merge.10.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -m both /tmp/R6lXcFh65m/merge.10.a.vcf.gz /tmp/R6lXcFh65m/merge.10.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -m both /tmp/R6lXcFh65m/merge.10.a.vcf.gz /tmp/R6lXcFh65m/merge.10.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -m both /tmp/R6lXcFh65m/merge.10.a.bcf /tmp/R6lXcFh65m/merge.10.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -m both /tmp/R6lXcFh65m/merge.10.a.bcf /tmp/R6lXcFh65m/merge.10.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -m snp-ins-del /tmp/R6lXcFh65m/merge.10.a.vcf.gz /tmp/R6lXcFh65m/merge.10.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -m snp-ins-del /tmp/R6lXcFh65m/merge.10.a.vcf.gz /tmp/R6lXcFh65m/merge.10.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -m snp-ins-del /tmp/R6lXcFh65m/merge.10.a.bcf /tmp/R6lXcFh65m/merge.10.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob -m snp-ins-del /tmp/R6lXcFh65m/merge.10.a.bcf /tmp/R6lXcFh65m/merge.10.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.mrules.1.a.vcf.gz /tmp/R6lXcFh65m/merge.mrules.1.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.mrules.1.a.vcf.gz /tmp/R6lXcFh65m/merge.mrules.1.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.mrules.1.a.bcf /tmp/R6lXcFh65m/merge.mrules.1.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.mrules.1.a.bcf /tmp/R6lXcFh65m/merge.mrules.1.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/R6lXcFh65m/merge.mrules.1.a.vcf.gz /tmp/R6lXcFh65m/merge.mrules.1.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/R6lXcFh65m/merge.mrules.1.a.vcf.gz /tmp/R6lXcFh65m/merge.mrules.1.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - -M AD:.,PL:. /tmp/R6lXcFh65m/merge.mrules.1.a.bcf /tmp/R6lXcFh65m/merge.mrules.1.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - -M AD:.,PL:. /tmp/R6lXcFh65m/merge.mrules.1.a.bcf /tmp/R6lXcFh65m/merge.mrules.1.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.5.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.5.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.5.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.5.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.5.a.bcf /tmp/R6lXcFh65m/merge.gvcf.5.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.5.a.bcf /tmp/R6lXcFh65m/merge.gvcf.5.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - --merge none /tmp/R6lXcFh65m/merge.gvcf.5.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.5.b.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/R6lXcFh65m/merge.gvcf.5.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.5.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - --merge none /tmp/R6lXcFh65m/merge.gvcf.5.a.bcf /tmp/R6lXcFh65m/merge.gvcf.5.b.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - --merge none /tmp/R6lXcFh65m/merge.gvcf.5.a.bcf /tmp/R6lXcFh65m/merge.gvcf.5.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.11.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.11.b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.11.c.vcf.gz 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.11.a.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.11.b.vcf.gz /tmp/R6lXcFh65m/merge.gvcf.11.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version --gvcf - /tmp/R6lXcFh65m/merge.gvcf.11.a.bcf /tmp/R6lXcFh65m/merge.gvcf.11.b.bcf /tmp/R6lXcFh65m/merge.gvcf.11.c.bcf 697s .. ok 697s 697s test_vcf_merge: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools merge --no-version -Ob --gvcf - /tmp/R6lXcFh65m/merge.gvcf.11.a.bcf /tmp/R6lXcFh65m/merge.gvcf.11.b.bcf /tmp/R6lXcFh65m/merge.gvcf.11.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version | grep -v ^##bcftools_ 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"' /tmp/R6lXcFh65m/query.string.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.string.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided,_conflicting_interpretations"' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"' /tmp/R6lXcFh65m/query.string.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.string.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" || CLNREVSTAT="_conflicting_interpretations"' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"' /tmp/R6lXcFh65m/query.string.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.string.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%CLNREVSTAT\n' -i'CLNREVSTAT="criteria_provided" && CLNREVSTAT="_conflicting_interpretations"' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/tmp/autopkgtest.mS6ftt/build.qze/src/test/query.string.2.1.txt' /tmp/R6lXcFh65m/query.string.2.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.string.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%INFO/STR\n' -i'INFO/STR=@/tmp/autopkgtest.mS6ftt/build.qze/src/test/query.string.2.1.txt' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/tmp/autopkgtest.mS6ftt/build.qze/src/test/query.string.2.2.txt' /tmp/R6lXcFh65m/query.string.2.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.string.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS[\t%STR]\n' -i'FMT/STR=@/tmp/autopkgtest.mS6ftt/build.qze/src/test/query.string.2.2.txt' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' /tmp/R6lXcFh65m/query.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%REF\t%ALT\t%DP4\t%AN[\t%GT\t%TGT]\n' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%RSX\t%VKX\n' /tmp/R6lXcFh65m/query.variantkey.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.variantkey.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%RSX\t%VKX\n' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XRI\n' -i'XRI[*]>1111' /tmp/R6lXcFh65m/view.filter.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XRI\n' -i'XRI[*]>1111' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' /tmp/R6lXcFh65m/view.filter.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XRF\n' -i'XRF[*]=2e6' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' /tmp/R6lXcFh65m/view.filter.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XGS\n' -i'XGS[5]="PQR"' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' /tmp/R6lXcFh65m/view.filter.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XGS\n' -i'XGS[*]="GHI"' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' /tmp/R6lXcFh65m/view.filter.vcf.gz 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XGS\n' -i'XGS[2]~"H"' 697s .. ok 697s 697s test_vcf_query: 697s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XGS\n' -i'XGS[3]!~"H" && XGS!="."' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XGS\n' -i'XGS[*]~"H"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %REF %ALT\n' -i'REF~"C" && ALT[*]~"CT"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %REF %ALT\n' -i'N_ALT=2' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %AN\n' -i'AN!=2*N_SAMPLES' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[ %GL]\n' -i'min(abs(GL[*:0]))=10' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %CIGAR\n' -i'strlen(CIGAR[*])=4' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[ %GT]\n' -i'AC[0]=3' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[ %GT]\n' -i'AF[0]=3/4' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[ %GT]\n' -i'MAC[0]=1' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[ %GT]\n' -i'MAF[0]=1/4' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' /tmp/R6lXcFh65m/view.vectors.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.vectors.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'I8=%I8 I16=%I16 I32=%I32 IF=%IF IA8=%IA8 IA16=%IA16 IA32=%IA32 IAF=%IAF IA8=%IA8{1} IA16=%IA16{1} IA32=%IA32{1} IAF=%IAF{1} [ %F8:%F16:%F32:%FF]\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"' /tmp/R6lXcFh65m/query.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT ="1"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"' /tmp/R6lXcFh65m/query.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %GT\n]' -i'GT!="1"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"' /tmp/R6lXcFh65m/query.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT ="1"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"' /tmp/R6lXcFh65m/query.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %GT\n]' -e'GT!="1"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' /tmp/R6lXcFh65m/query.2.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%XX_A %XX.A %XX.A0 %xx.a0\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'IINT="."' -f'%POS %IINT\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'IINT="."' -f'%POS %IINT\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'IINT!="."' -f'%POS %IINT\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'IINT!="."' -f'%POS %IINT\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'IINT!="."' -f'%POS %IINT\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'IINT!="."' -f'%POS %IINT\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'IINT="."' -f'%POS %IINT\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'IINT="."' -f'%POS %IINT\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'IFLT="."' -f'%POS %IFLT\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'IFLT="."' -f'%POS %IFLT\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'IFLT!="."' -f'%POS %IFLT\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'IFLT!="."' -f'%POS %IFLT\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'IFLT="."' -f'%POS %IFLT\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'IFLT="."' -f'%POS %IFLT\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'ISTR="."' -f'%POS %ISTR\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'ISTR="."' -f'%POS %ISTR\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'ISTR!="."' -f'%POS %ISTR\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'ISTR="."' -f'%POS %ISTR\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'ISTR="."' -f'%POS %ISTR\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -e'ISTR!="."' -f'%POS %ISTR\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER="q11"' -f'%POS %ISTR\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n' /tmp/R6lXcFh65m/filter.11.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.11.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER="A"' -f'%POS %FILTER\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n' /tmp/R6lXcFh65m/filter.11.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.11.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER!="A"' -f'%POS %FILTER\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n' /tmp/R6lXcFh65m/filter.11.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.11.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER~"A"' -f'%POS %FILTER\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n' /tmp/R6lXcFh65m/filter.11.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.11.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER!~"A"' -f'%POS %FILTER\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%LINE' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%LINE' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"' /tmp/R6lXcFh65m/query.filter-type.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter-type.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type="snp"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"' /tmp/R6lXcFh65m/query.filter-type.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter-type.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type~"snp"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"' /tmp/R6lXcFh65m/query.filter-type.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter-type.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!="snp"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"' /tmp/R6lXcFh65m/query.filter-type.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter-type.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\n' -i'type!~"snp"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"' /tmp/R6lXcFh65m/query.filter-type.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter-type.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\n' -i'INFO/TYPE="xxx"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/R6lXcFh65m/filter-missing-floats.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter-missing-floats.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -i'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' /tmp/R6lXcFh65m/filter-missing-floats.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter-missing-floats.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%A_AF\t%B_AF\t%C_AF\n' -e'A_AF>=0.0001 || B_AF >= 0.0001 || C_AF >= 0.0001' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n' /tmp/R6lXcFh65m/missing.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FMT/FINT!="."' -f'[\t%FINT]\n' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"' /tmp/R6lXcFh65m/query.filter.2.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%GT]\n' -i'GT~"0/[1-9]" || GT~"[1-9]/0"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:1-2,4]="EE"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'"EE"=FGS[*:1-2,4]' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]=6' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'6=FGI[*:1-2,5]' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGF\n]\n' -i'FGF[*:1-3,4]=5e-5' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="EE"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]="."' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGS\n]\n' -i'FGS[*:4]!="."' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]="."' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %FGI\n]\n' -i'FGI[*:1-2,5]!="."' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2' /tmp/R6lXcFh65m/filter.5.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP=2' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."' /tmp/R6lXcFh65m/filter.5.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=1 | FMT/DP="."' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 | FMT/DP="."' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 | FMT/DP="."' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP=19 || FMT/DP="."' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]=19' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP\n]\n' -i'FMT/DP[0]!=19' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 & FMT/GQ=589' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 & FMT/GQ=589' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1' /tmp/R6lXcFh65m/view.filter.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.filter.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %DP %GQ\n]\n' -i'FMT/DP=19 && FMT/GQ=1' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"' /tmp/R6lXcFh65m/query.filter.3.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.3.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" && GT~"2"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" & GT~"2"' /tmp/R6lXcFh65m/query.filter.3.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.3.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[\t%GT\n]\n' -i'GT~"1" & GT~"2"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1' /tmp/R6lXcFh65m/query.filter.3.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.3.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS[\t%GT]\n' -i'COUNT(GT="het")=1' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %AD\n]\n' -i'AD[:0]+AD[:1] > 12' /tmp/R6lXcFh65m/filter.5.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %AD\n]\n' -i'AD[:0]+AD[:1] > 12' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"' /tmp/R6lXcFh65m/query.filter.4.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.4.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT[\t%GT]\n' -e'TYPE!="snp" || ALT="*"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%ID\n' -i 'ID=@/tmp/autopkgtest.mS6ftt/build.qze/src/test/query.56.out' /tmp/R6lXcFh65m/view.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%ID\n' -i 'ID=@/tmp/autopkgtest.mS6ftt/build.qze/src/test/query.56.out' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01' /tmp/R6lXcFh65m/query.filter.5.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD)>0.01' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01' /tmp/R6lXcFh65m/query.filter.5.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\t%AD\n]' -i'GT="het" & binom(FMT/AD[:0],FMT/AD[:1])>0.01' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01' /tmp/R6lXcFh65m/query.filter.5.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%AD\n' -i'binom(INFO/AD[0],INFO/AD[1])>0.01' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10' /tmp/R6lXcFh65m/query.filter.5.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[GT]==10' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210' /tmp/R6lXcFh65m/query.filter.5.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'sSUM(FMT/AD[GT])==210' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30' /tmp/R6lXcFh65m/query.filter.5.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%GT\t%SAMPLE\t%AD\n]' -i'FMT/AD[0:GT]==30' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS\n' -i'CHROM="4"' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)' /tmp/R6lXcFh65m/query.negative.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.negative.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%TAG1\n' -i'(TAG1>=-129 && TAG1<=-120) || (TAG1>=-32769 && TAG1<=-32760)' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)' /tmp/R6lXcFh65m/query.negative.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.negative.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%TAGV1\n' -i'(TAGV1>=-129 && TAGV1<=-120) || (TAGV1>=-32769 && TAGV1<=-32760)' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)' /tmp/R6lXcFh65m/query.negative.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.negative.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%TAG2\n' -i'(TAG2>=-129 && TAG2<=-120) || (TAG2>=-32769 && TAG2<=-32760)' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)' /tmp/R6lXcFh65m/query.negative.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.negative.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%TAGV2\n' -i'(TAGV2>=-129 && TAGV2<=-120) || (TAGV2>=-32769 && TAGV2<=-32760)' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1' /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GQ\n]' -i'N_PASS(GQ<20)==1' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1' /tmp/R6lXcFh65m/query.filter.11.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.11.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")==1' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1' /tmp/R6lXcFh65m/query.filter.11.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.11.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -i'N_PASS(GT="alt")!=1' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1' /tmp/R6lXcFh65m/query.filter.11.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.11.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")==1' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1' /tmp/R6lXcFh65m/query.filter.11.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.11.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%SAMPLE\t%GT\n]' -e'N_PASS(GT="alt")!=1' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C /tmp/R6lXcFh65m/query.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM\t%POS\t%INFO\t%FORMAT\n' -s D,C 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904' /tmp/R6lXcFh65m/query.filter.6.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.6.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\n' -i'POS==16777217 || POS==33554432 || POS=118673904' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6' /tmp/R6lXcFh65m/query.filter.7.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.7.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(II)==6' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7' /tmp/R6lXcFh65m/query.filter.7.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.7.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'sum(FORMAT/FI)==7' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2' /tmp/R6lXcFh65m/query.filter.7.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.7.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(II)==2' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75' /tmp/R6lXcFh65m/query.filter.7.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.7.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'avg(FORMAT/FI)==1.75' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2' /tmp/R6lXcFh65m/query.filter.7.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.7.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(II)==2' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75' /tmp/R6lXcFh65m/query.filter.7.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.7.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'mean(FORMAT/FI)==1.75' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2' /tmp/R6lXcFh65m/query.filter.7.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.7.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(II)==2' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5' /tmp/R6lXcFh65m/query.filter.7.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.7.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%II[\t%FI]\n' -i'median(FORMAT/FI)==1.5' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1' /tmp/R6lXcFh65m/query.filter.8.vcf.gz 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.8.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'%ILEN==1' 698s .. ok 698s 698s test_vcf_query: 698s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1' /tmp/R6lXcFh65m/query.filter.8.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.8.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%ILEN\n' -i'ILEN==1' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]' /tmp/R6lXcFh65m/query.filter.9.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.9.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %AD\n]' -i'FMT/AD[:0] < FMT/AD[:1]' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]' /tmp/R6lXcFh65m/query.filter.9.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.9.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS %SAMPLE %AD\n]' -i'FMT/AD[:0] > FMT/AD[:1]' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5' /tmp/R6lXcFh65m/query.filter.13.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.13.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[ %AD\n]' -i'AD[:1] / sum(AD[*]) > 0.5' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2' /tmp/R6lXcFh65m/query.filter.10.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.10.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %NUM_TAG\n' -i'COUNT(INFO/NUM_TAG)=2' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2' /tmp/R6lXcFh65m/query.filter.10.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.10.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS %STR_TAG\n' -i'COUNT(INFO/STR_TAG)=2' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n' /tmp/R6lXcFh65m/query.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM:%POS\t%N_PASS(GT="alt" & GQ>110)\t[\t%GT]\t[\t%GQ]\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0 /tmp/R6lXcFh65m/query.filter.12.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.12.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 1,3,0 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3 /tmp/R6lXcFh65m/query.filter.12.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.12.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM:%POS[\t%SAMPLE=%GT]\n' -e 'GT="mis"' -s 0,1,3 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f "[%SAMPLE %GT\n]" -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.11.txt /tmp/R6lXcFh65m/query.smpl.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.smpl.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f "[%SAMPLE %GT\n]" -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.11.txt 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -l -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.11.txt /tmp/R6lXcFh65m/query.smpl.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.smpl.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -l -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.11.txt 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f "[%SAMPLE %GT\n]" -S ^/tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.11.txt /tmp/R6lXcFh65m/query.smpl.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.smpl.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f "[%SAMPLE %GT\n]" -S ^/tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.11.txt 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -l -S ^/tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.11.txt /tmp/R6lXcFh65m/query.smpl.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.smpl.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -l -S ^/tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.11.txt 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f "[%SAMPLE %GT\n]" -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.txt /tmp/R6lXcFh65m/query.smpl.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.smpl.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f "[%SAMPLE %GT\n]" -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.txt 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -l -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.txt /tmp/R6lXcFh65m/query.smpl.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.smpl.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -l -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/query.smpl.txt 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%ID\n' -i'ID~"s12"' /tmp/R6lXcFh65m/query.filter.id.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.id.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%ID\n' -i'ID~"s12"' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%ID\n' -i'ID="rs123"' /tmp/R6lXcFh65m/query.filter.id.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.filter.id.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%ID\n' -i'ID="rs123"' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER="A"' -f'%FILTER\n' /tmp/R6lXcFh65m/filter.12.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.12.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER="A"' -f'%FILTER\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER~"A"' -f'%FILTER\n' /tmp/R6lXcFh65m/filter.12.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.12.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER~"A"' -f'%FILTER\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER="A;B"' -f'%FILTER\n' /tmp/R6lXcFh65m/filter.12.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.12.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER="A;B"' -f'%FILTER\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n' /tmp/R6lXcFh65m/filter.12.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.12.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER!="A;B"' -f'%FILTER\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n' /tmp/R6lXcFh65m/filter.12.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.12.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER~"A;B"' -f'%FILTER\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n' /tmp/R6lXcFh65m/filter.12.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.12.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'FILTER!~"A;B"' -f'%FILTER\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'DP%10==2' -f'[ %DP]\n' /tmp/R6lXcFh65m/filter.10.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.10.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'DP%10==2' -f'[ %DP]\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n' /tmp/R6lXcFh65m/filter.13.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/filter.13.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -i'REF="N"' -f'%CHROM %POS %REF %ALT %QUAL\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'[%CHROM %POS %SAMPLE %DP %GT\n]' /tmp/R6lXcFh65m/query.header.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.header.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'[%CHROM %POS %SAMPLE %DP %GT\n]' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'[%CHROM %POS %SAMPLE %DP %GT\t]\n' /tmp/R6lXcFh65m/query.header.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.header.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'[%CHROM %POS %SAMPLE %DP %GT\t]\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n' /tmp/R6lXcFh65m/query.header.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.header.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]' /tmp/R6lXcFh65m/query.header.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.header.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'%CHROM %POS[ %SAMPLE %DP %GT]' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n' /tmp/R6lXcFh65m/query.header.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.header.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]\n' 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' /tmp/R6lXcFh65m/query.header.vcf.gz 699s .. ok 699s 699s test_vcf_query: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/query.header.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -H -f'%CHROM %POS[ %SAMPLE][ %DP][ %GT]' 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -cx -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.fa /tmp/R6lXcFh65m/norm.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -cx -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.fa /tmp/R6lXcFh65m/norm.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m- /tmp/R6lXcFh65m/norm.split.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m- /tmp/R6lXcFh65m/norm.split.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m- /tmp/R6lXcFh65m/norm.split.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m- /tmp/R6lXcFh65m/norm.split.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m- --force /tmp/R6lXcFh65m/norm.split.3.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m- --force /tmp/R6lXcFh65m/norm.split.3.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m- /tmp/R6lXcFh65m/norm.split.4.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m- /tmp/R6lXcFh65m/norm.split.4.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m- --keep-sum AD /tmp/R6lXcFh65m/norm.split.4.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m- --keep-sum AD /tmp/R6lXcFh65m/norm.split.4.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m- -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.fa /tmp/R6lXcFh65m/norm.split.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m- -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.fa /tmp/R6lXcFh65m/norm.split.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m+ /tmp/R6lXcFh65m/norm.merge.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m+ /tmp/R6lXcFh65m/norm.merge.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m+ /tmp/R6lXcFh65m/norm.merge.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m+ /tmp/R6lXcFh65m/norm.merge.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m+ /tmp/R6lXcFh65m/norm.merge.3.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m+ /tmp/R6lXcFh65m/norm.merge.3.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m+ -s /tmp/R6lXcFh65m/norm.merge.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m+ -s /tmp/R6lXcFh65m/norm.merge.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -Nc s -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.fa /tmp/R6lXcFh65m/norm.setref.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -Nc s -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.fa /tmp/R6lXcFh65m/norm.setref.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.fa /tmp/R6lXcFh65m/norm.telomere.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.fa /tmp/R6lXcFh65m/norm.telomere.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d snps /tmp/R6lXcFh65m/norm.rmdup.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d snps /tmp/R6lXcFh65m/norm.rmdup.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d indels /tmp/R6lXcFh65m/norm.rmdup.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d indels /tmp/R6lXcFh65m/norm.rmdup.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d both /tmp/R6lXcFh65m/norm.rmdup.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d both /tmp/R6lXcFh65m/norm.rmdup.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d all /tmp/R6lXcFh65m/norm.rmdup.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d all /tmp/R6lXcFh65m/norm.rmdup.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d none /tmp/R6lXcFh65m/norm.rmdup.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d none /tmp/R6lXcFh65m/norm.rmdup.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d exact /tmp/R6lXcFh65m/norm.rmdup.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d exact /tmp/R6lXcFh65m/norm.rmdup.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d none /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d none /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d exact /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d exact /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d indels /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d indels /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d any /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d any /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d both /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d both /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -d snps /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -d snps /tmp/R6lXcFh65m/norm.rmdup.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -c s -a -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.2.fa /tmp/R6lXcFh65m/norm.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -c s -a -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.2.fa /tmp/R6lXcFh65m/norm.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -c s -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.iupac.fa /tmp/R6lXcFh65m/norm.iupac.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -c s -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.iupac.fa /tmp/R6lXcFh65m/norm.iupac.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -c s -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.3.fa /tmp/R6lXcFh65m/norm.3.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -c s -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.3.fa /tmp/R6lXcFh65m/norm.3.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --atomize --old-rec-tag OLD_REC -m -any /tmp/R6lXcFh65m/atomize.split.1.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --atomize --old-rec-tag OLD_REC -m -any /tmp/R6lXcFh65m/atomize.split.1.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/R6lXcFh65m/atomize.split.1.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --atomize --old-rec-tag OLD_REC /tmp/R6lXcFh65m/atomize.split.1.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/R6lXcFh65m/atomize.split.1.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/R6lXcFh65m/atomize.split.1.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --atomize --old-rec-tag OLD_REC /tmp/R6lXcFh65m/atomize.split.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --atomize --old-rec-tag OLD_REC /tmp/R6lXcFh65m/atomize.split.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/R6lXcFh65m/atomize.split.2.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/R6lXcFh65m/atomize.split.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --atomize --atom-overlaps . /tmp/R6lXcFh65m/atomize.split.3.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --atomize --atom-overlaps . /tmp/R6lXcFh65m/atomize.split.3.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/R6lXcFh65m/atomize.split.4.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --atomize --atom-overlaps . --old-rec-tag OLD_REC /tmp/R6lXcFh65m/atomize.split.4.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m +both /tmp/R6lXcFh65m/norm.4.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m +both /tmp/R6lXcFh65m/norm.4.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m +any /tmp/R6lXcFh65m/norm.4.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m +any /tmp/R6lXcFh65m/norm.4.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m - --multi-overlaps 0 /tmp/R6lXcFh65m/norm.5.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m - --multi-overlaps 0 /tmp/R6lXcFh65m/norm.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m - --multi-overlaps . /tmp/R6lXcFh65m/norm.5.vcf.gz 699s .. ok 699s 699s test_vcf_norm: 699s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m - --multi-overlaps . /tmp/R6lXcFh65m/norm.5.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m -any /tmp/R6lXcFh65m/norm.m-any.vcf.gz 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m -any /tmp/R6lXcFh65m/norm.m-any.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m -any /tmp/R6lXcFh65m/norm.phased-split.vcf.gz 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m -any /tmp/R6lXcFh65m/norm.phased-split.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version -m +any /tmp/R6lXcFh65m/norm.phased-join.vcf.gz 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob -m +any /tmp/R6lXcFh65m/norm.phased-join.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --old-rec-tag ORI -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.symbolic.fa /tmp/R6lXcFh65m/norm.symbolic.vcf.gz 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --old-rec-tag ORI -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.symbolic.fa /tmp/R6lXcFh65m/norm.symbolic.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --old-rec-tag ORI -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.symbolic.fa /tmp/R6lXcFh65m/norm.symbolic.2.vcf.gz 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --old-rec-tag ORI -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.symbolic.fa /tmp/R6lXcFh65m/norm.symbolic.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --old-rec-tag ORI -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.right-align.fa /tmp/R6lXcFh65m/norm.right-align.vcf.gz 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --old-rec-tag ORI -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.right-align.fa /tmp/R6lXcFh65m/norm.right-align.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm --no-version --old-rec-tag ORI -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.right-align.gff -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.right-align.fa /tmp/R6lXcFh65m/norm.right-align.vcf.gz 700s .. ok 700s 700s test_vcf_norm: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools norm -Ob --old-rec-tag ORI -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.right-align.gff -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/norm.right-align.fa /tmp/R6lXcFh65m/norm.right-align.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -HA /tmp/R6lXcFh65m/merge.gvcf.2.a.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -HAA /tmp/R6lXcFh65m/merge.gvcf.2.a.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r 1 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r 1 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r 1:1-2 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r 1:1-2 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r 1:1,1:2 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r 1:1,1:2 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r 1:1-1 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r 1:1-1 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1} 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1} | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1}:1-2 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1}:1-2 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1}:1,{1:1}:2 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1}:1-1 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1}:1-1 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1-1} 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1-1} | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1-1}:1-2 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1-1}:1-2 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1-1}:1,{1:1-1}:2 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1-1}:1-1 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1-1}:1-1 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1-1}-2 700s .. ok, expected non-zero status 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/weird-chr-names.vcf.gz -r {1:1-1}-2 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok, expected non-zero status 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -aUc1 -C1 -s NA00002 -v snps /tmp/R6lXcFh65m/view.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -aUc1 -C1 -s NA00002 -v snps /tmp/R6lXcFh65m/view.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -f PASS -Xks NA00003 /tmp/R6lXcFh65m/view.vcf.gz -r20,Y 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -f PASS -Xks NA00003 /tmp/R6lXcFh65m/view.vcf.gz -r20,Y | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -xs NA00003 /tmp/R6lXcFh65m/view.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -xs NA00003 /tmp/R6lXcFh65m/view.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/R6lXcFh65m/view.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -i 'QUAL==999 && (FS<20 || FS>=41.02) && ICF>-0.1 && HWE*2>1.2' /tmp/R6lXcFh65m/view.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -p /tmp/R6lXcFh65m/view.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -p /tmp/R6lXcFh65m/view.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -P /tmp/R6lXcFh65m/view.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -P /tmp/R6lXcFh65m/view.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -hm2 -M2 -q0.3 -Q0.7 /tmp/R6lXcFh65m/view.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -hm2 -M2 -q0.3 -Q0.7 /tmp/R6lXcFh65m/view.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -Hu /tmp/R6lXcFh65m/view.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -GVsnps /tmp/R6lXcFh65m/view.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -GVsnps /tmp/R6lXcFh65m/view.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -ne 'INDEL=1 || PV4[0]<0.006' /tmp/R6lXcFh65m/view.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -ne 'INDEL=1 || PV4[0]<0.006' /tmp/R6lXcFh65m/view.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -s ^NA00003 /tmp/R6lXcFh65m/view.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -s ^NA00003 /tmp/R6lXcFh65m/view.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version /tmp/R6lXcFh65m/view.omitgenotypes.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/view.omitgenotypes.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -G /tmp/R6lXcFh65m/view.omitgenotypes.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -G /tmp/R6lXcFh65m/view.omitgenotypes.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -HG /tmp/R6lXcFh65m/view.omitgenotypes.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -a /tmp/R6lXcFh65m/many.alleles.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -a /tmp/R6lXcFh65m/many.alleles.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -asA /tmp/R6lXcFh65m/view.vectors.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -asA /tmp/R6lXcFh65m/view.vectors.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -asB /tmp/R6lXcFh65m/view.vectors.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -asB /tmp/R6lXcFh65m/view.vectors.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -asA /tmp/R6lXcFh65m/view.vectors.2.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -asA /tmp/R6lXcFh65m/view.vectors.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -i'FMT/FGS[*:0]="AAAAAA"' /tmp/R6lXcFh65m/view.filter.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -i'FMT/FGS[*:2]="C"' /tmp/R6lXcFh65m/view.filter.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -i'FMT/FGS[*:4]="EE"' /tmp/R6lXcFh65m/view.filter.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -i'FMT/FRS[*:1]="BB"' /tmp/R6lXcFh65m/view.filter.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -i'TXT0="text"' /tmp/R6lXcFh65m/view.filter.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -T /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.chrs.tab /tmp/R6lXcFh65m/view.chrs.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -T /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.chrs.tab /tmp/R6lXcFh65m/view.chrs.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -i 'POS>=3062917' /tmp/R6lXcFh65m/filter.2.vcf.gz 1:3062917-3157410 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -i 'POS>=3062917' /tmp/R6lXcFh65m/filter.2.vcf.gz 1:3062917-3157410 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -r 1:10,1:12,1:10 /tmp/R6lXcFh65m/idx.1.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -r 1:1172777-1172804,1:1172806-1172808 /tmp/R6lXcFh65m/idx.2.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -R /tmp/autopkgtest.mS6ftt/build.qze/src/test/idx.2.bed /tmp/R6lXcFh65m/idx.2.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -R /tmp/autopkgtest.mS6ftt/build.qze/src/test/idx.3.bed /tmp/R6lXcFh65m/idx.3.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -R /tmp/autopkgtest.mS6ftt/build.qze/src/test/idx.4.bed /tmp/R6lXcFh65m/idx.4.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -Ht 2 /tmp/R6lXcFh65m/view-t.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -Ht 3 /tmp/R6lXcFh65m/view-t.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 0 /tmp/R6lXcFh65m/overlap.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 1 /tmp/R6lXcFh65m/overlap.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -r chr1:100-200 --regions-overlap 2 /tmp/R6lXcFh65m/overlap.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 0 /tmp/R6lXcFh65m/overlap.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 1 /tmp/R6lXcFh65m/overlap.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -t chr1:100-200 --targets-overlap 2 /tmp/R6lXcFh65m/overlap.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 0 /tmp/R6lXcFh65m/overlap.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 1 /tmp/R6lXcFh65m/overlap.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -t ^chr1:100-200 --targets-overlap 2 /tmp/R6lXcFh65m/overlap.vcf.gz 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.1.vcf -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.1.vcf -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.2.vcf -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.2.vcf -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.3.vcf -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.4.vcf -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.4.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.4.vcf -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.5.vcf -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 700s .. ok 700s 700s test_vcf_64bit: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view /tmp/autopkgtest.mS6ftt/build.qze/src/test/view64bit.5.vcf -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -C5:nonmajor /tmp/R6lXcFh65m/view.minmaxac.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -c6:nonmajor /tmp/R6lXcFh65m/view.minmaxac.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -q0.3:major /tmp/R6lXcFh65m/view.minmaxac.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -i 'Gene.refGene=="RAD21L1"' /tmp/R6lXcFh65m/view.filter.annovar.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -i 'Gene.refGene~"NOD"' /tmp/R6lXcFh65m/view.filter.annovar.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -i 'LJB2_MutationTaster=="0.291000"' /tmp/R6lXcFh65m/view.filter.annovar.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -H -a /tmp/R6lXcFh65m/view-a.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -T /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.sites.txt /tmp/R6lXcFh65m/view.sites.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -T /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.sites.txt /tmp/R6lXcFh65m/view.sites.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -T /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.sites.txt.gz /tmp/R6lXcFh65m/view.sites.vcf.gz 700s .. ok 700s 700s test_vcf_view: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob -T /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.sites.txt.gz /tmp/R6lXcFh65m/view.sites.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_head: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 700s .. ok 700s 700s test_vcf_head: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -h 0 /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 700s .. ok 700s 700s test_vcf_head: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -h 1 /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 700s .. ok 700s 700s test_vcf_head: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -h 5 /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 700s .. ok 700s 700s test_vcf_head: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -h 22 /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 700s .. ok 700s 700s test_vcf_head: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -h 23 /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 700s .. ok 700s 700s test_vcf_head: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -n 0 /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 700s .. ok 700s 700s test_vcf_head: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -n 1 /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 700s .. ok 700s 700s test_vcf_head: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -n 5 /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 700s .. ok 700s 700s test_vcf_head: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -h 5 -n 5 < /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 700s .. ok 700s 700s test_vcf_head2: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -s0 /tmp/R6lXcFh65m/mpileup.2.vcf.gz 700s .. ok 700s 700s test_vcf_head2: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -Ob /tmp/R6lXcFh65m/mpileup.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -s0 700s .. ok 700s 700s test_vcf_head2: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -s1 /tmp/R6lXcFh65m/mpileup.2.vcf.gz 700s .. ok 700s 700s test_vcf_head2: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -Ob /tmp/R6lXcFh65m/mpileup.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -s1 700s .. ok 700s 700s test_vcf_head2: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -s2 -h2 /tmp/R6lXcFh65m/mpileup.2.vcf.gz 700s .. ok 700s 700s test_vcf_head2: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version -Ob /tmp/R6lXcFh65m/mpileup.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools head -s2 -h2 700s .. ok 700s 700s test_vcf_call: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf 700s .. ok 700s 700s test_vcf_call: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 700s .. ok 700s 700s test_vcf_call: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mg0 /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf 700s .. ok 700s 700s test_vcf_call: 700s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mg0 /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.3.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.3.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.4.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.4.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.5.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.5.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.X.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.X.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ped /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.X.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ped /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.X.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.X.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.X.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.NA19213.NA19129.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.NA19213.NA19129.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv -G - --group-samples-tag AD /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.NA19213.NA19129.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv -G - --group-samples-tag AD /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.NA19213.NA19129.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.hwe.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.hwe.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv -G - --group-samples-tag AD /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.hwe.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv -G - --group-samples-tag AD /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.hwe.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.hwe.samples --group-samples-tag AD /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.hwe.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.hwe.samples --group-samples-tag AD /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.hwe.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.tab.gz /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.tab.gz /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.2.tab.gz /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.2.tab.gz /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.3.tab.gz -i /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.3.vcf 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.3.tab.gz -i /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.4.tab.gz -i /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.3.vcf 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.4.tab.gz -i /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.5.tab.gz -i /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.3.vcf 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.5.tab.gz -i /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.6.tab.gz -i /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.4.vcf 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.6.tab.gz -i /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.4.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.7.tab.gz -i /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.5.vcf 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.7.tab.gz -i /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.cals.1.tab.gz /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.cals.1.vcf 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.cals.1.tab.gz /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.cals.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.cals.2.tab.gz /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.cals.2.vcf 701s .. ok 701s 701s test_vcf_call_cAls: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mA -C alleles -T /tmp/R6lXcFh65m/mpileup.cals.2.tab.gz /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.cals.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -cv /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.c.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -cv /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.c.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -cv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.c.X.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -cv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.c.X.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -cv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ped /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.c.X.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -cv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ped /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.c.X.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -cv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.c.X.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -cv --ploidy-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.ploidy -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.2.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup.c.X.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv /tmp/autopkgtest.mS6ftt/build.qze/src/test/call-G.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv /tmp/autopkgtest.mS6ftt/build.qze/src/test/call-G.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv -G - --group-samples-tag AD /tmp/autopkgtest.mS6ftt/build.qze/src/test/call-G.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv -G - --group-samples-tag AD /tmp/autopkgtest.mS6ftt/build.qze/src/test/call-G.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -mv -F AN_POP,AC_POP /tmp/autopkgtest.mS6ftt/build.qze/src/test/call-G.2.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -mv -F AN_POP,AC_POP /tmp/autopkgtest.mS6ftt/build.qze/src/test/call-G.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/call.af-fixation.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/call.af-fixation.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -m -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/call.af-fixation.txt /tmp/autopkgtest.mS6ftt/build.qze/src/test/call.af-fixation.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -m -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/call.af-fixation.txt /tmp/autopkgtest.mS6ftt/build.qze/src/test/call.af-fixation.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call --no-version -m -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/call.af-fixation.txt -a GP,GQ /tmp/autopkgtest.mS6ftt/build.qze/src/test/call.af-fixation.vcf 701s .. ok 701s 701s test_vcf_call: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools call -Ob -m -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/call.af-fixation.txt -a GP,GQ /tmp/autopkgtest.mS6ftt/build.qze/src/test/call.af-fixation.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S. -e'TXT0="text"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S. -e'TXT0="text"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S. -e'FMT/FRS[*:1]="BB"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S. -e'FMT/FRS[*:1]="BB"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S. -e'FMT/FGS[*:0]="AAAAAA"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S. -e'FMT/FGS[*:0]="AAAAAA"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S. -e'FMT/FGS[*:1]="BBB"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S. -e'FMT/FGS[*:1]="BBB"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S. -e'FMT/FGS[*:4]="EE"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S. -e'FMT/FGS[*:4]="EE"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S. -e'FMT/STR="XX"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S. -e'FMT/STR="XX"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S. -e'FMT/FILTER="aaa"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.2.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S. -e'FMT/FILTER="aaa"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/view.filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -mx -g2 -G2 /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.1.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -mx -g2 -G2 /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'QUAL==59.2 || (INDEL=0 & (FMT/GQ=25 | FMT/DP=10))' -sModified -S. /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'INFO/DP=19' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'INFO/DP=19' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'INFO/DP=19' -s XX /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'INFO/DP=19' -s XX /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'INFO/DP=19' -s XX -m+ /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+ /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'INFO/DP=19' -s XX -mx /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'INFO/DP=19' -s XX -mx /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'INFO/DP=19' -s XX -m+x /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'INFO/DP=19' -s XX -m+x /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'FMT/GT="0/2"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'FMT/GT="0/2"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'FMT/GT="0/2"' -s XX /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'FMT/GT="0/2"' -s XX -m+ /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+ /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'FMT/GT="0/2"' -s XX -mx /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -mx /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -e'FMT/GT="0/2"' -s XX -m+x /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -e'FMT/GT="0/2"' -s XX -m+x /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%FILTER\t%DP[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'FMT/GT="0/0" && AC[*]=2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%AC[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'FMT/GT="0/0" && AC[*]=2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%AC[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'AC[*]=2 && FMT/GT="0/0"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%AC[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'AC[*]=2 && FMT/GT="0/0"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%AC[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'ALT="."' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%AC[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'ALT="."' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%AC[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -i 'FORMAT/TEST3<25' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.4.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -i 'FORMAT/TEST3<25' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.4.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -i 'FORMAT/TEST4<25' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.4.vcf | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -i 'FORMAT/TEST4<25' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.4.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'GT="A"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'GT="A"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'GT="RR"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'GT="RR"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'GT="RA"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 701s .. ok 701s 701s test_vcf_filter: 701s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'GT="RA"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'GT="AR"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'GT="AR"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'GT="AA"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'GT="AA"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'GT="aA"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'GT="aA"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'GT="Aa"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'GT="Aa"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'GT="HOM"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'GT="HOM"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'GT="HET"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'GT="HET"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'GT="HAP"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'GT="HAP"' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%GT]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'AD[:1]=11' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%AD]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'AD[:1]=11' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%AD]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'AD[1:]=11' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%AD]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'AD[1:]=11' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%AD]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'FR[0:1]=11' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%FR]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'FR[0:1]=11' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%FR]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'AD[*]="."' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%AD]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'AD[*]="."' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%AD]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'AD[0:0]=="."' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%AD]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'AD[0:0]=="."' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%AD]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'AD[0:0]!="."' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%AD]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'AD[0:0]!="."' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS[\t%AD]\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'QUAL=="."' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%QUAL\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'QUAL=="."' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\t%QUAL\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'N_PASS(DP>32)=1' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'N_PASS(DP>32)=1' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'F_PASS(DP>32)=0.5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'F_PASS(DP>32)=0.5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '[%POS\t%SAMPLE\t%DP\n]' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'F_MISSING>=1/5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.6.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'F_MISSING>=1/5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.6.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'F_MISSING>=0.2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.6.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'F_MISSING>=0.2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.6.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'F_PASS(GT=="mis")>=1/5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.6.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'F_PASS(GT=="mis")>=1/5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.6.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i'F_PASS(GT=="mis")>=0.2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.6.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i'F_PASS(GT=="mis")>=0.2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.6.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%POS\n' 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -mx -s + -g2:mnp,indel,other /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.7.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -mx -s + -g2:mnp,indel,other /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.7.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'FORMAT/AO==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'FORMAT/AO==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'MAX(FORMAT/AO[0:])==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO[0:])==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'MAX(FORMAT/AO)==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'MAX(FORMAT/AO)==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'MIN(FORMAT/AO)==2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO)==2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'MIN(FORMAT/AO[0:])==3' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'MIN(FORMAT/AO[0:])==3' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'AVG(FORMAT/AO[2:])==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'AVG(FORMAT/AO[2:])==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'MEDIAN(FORMAT/AO[2:])==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'STDEV(FORMAT/AO[0:])=0.5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'SUM(FORMAT/AO[0:])=7' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'SUM(FORMAT/AO[0:])=7' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'SMPL_MAX(FORMAT/AO)==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'SMPL_MAX(FORMAT/AO)==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'sMIN(FORMAT/AO)==2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'sMIN(FORMAT/AO)==2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'ABS(sAVG(FORMAT/AO)-3.66666)<1e-5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'sMEDIAN(FORMAT/AO)==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'sMEDIAN(FORMAT/AO)==4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'ABS(sSTDEV(FORMAT/AO)-1.2472191)<1e-5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'sSUM(FORMAT/AO)==11' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'sSUM(FORMAT/AO)==11' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i 'QUAL/FMT/AD==55' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.9.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i 'QUAL/FMT/AD==55' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.9.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i 'QUAL/INFO/AD==10' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.9.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i 'QUAL/INFO/AD==10' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.9.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'ABS(SMPL_MAX(FORMAT/AO))=5' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'PHRED(AO[1:])>-4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'PHRED(AO[1:])>-4' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -S . -e 'ABS(AO[1:])==2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -S . -e 'ABS(AO[1:])==2' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i 'sum(AD[*]) > FORMAT/DP' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.10.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i 'sum(AD[*]) > FORMAT/DP' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.10.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i 'FORMAT/DP < sum(AD[*])' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.10.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i 'FORMAT/DP < sum(AD[*])' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.10.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i 'sum(AD[*]) < FORMAT/DP' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.10.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i 'sum(AD[*]) < FORMAT/DP' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.10.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -i 'FORMAT/DP > sum(AD[*])' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.10.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob -i 'FORMAT/DP > sum(AD[*])' /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.10.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.1.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 0 /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.1.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 1 /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.1.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob --soft-filter xxx --mask 2:1005-1008 --mask-overlap 2 /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter --soft-filter xxx --mask ^2:1005-1008 /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.1.vcf | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_filter: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools filter -Ob --soft-filter xxx --mask ^2:1005-1008 /tmp/autopkgtest.mS6ftt/build.qze/src/test/filter.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_sort: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools sort -m 0 /tmp/autopkgtest.mS6ftt/build.qze/src/test/sort.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n' 702s .. ok 702s 702s test_vcf_sort: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools sort -Ob -m 0 /tmp/autopkgtest.mS6ftt/build.qze/src/test/sort.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n' 702s .. ok 702s 702s test_vcf_sort: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools sort -m 1000 /tmp/autopkgtest.mS6ftt/build.qze/src/test/sort.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n' 702s .. ok 702s 702s test_vcf_sort: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools sort -Ob -m 1000 /tmp/autopkgtest.mS6ftt/build.qze/src/test/sort.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f '%CHROM\t%POS\t%REF,%ALT\n' 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/autopkgtest.mS6ftt/build.qze/src/test/regions.tab /tmp/R6lXcFh65m/regions.vcf.gz 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/regions.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/autopkgtest.mS6ftt/build.qze/src/test/regions.tab 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/autopkgtest.mS6ftt/build.qze/src/test/regions.tab /tmp/R6lXcFh65m/regions.vcf.gz 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/R6lXcFh65m/regions.tab.gz /tmp/R6lXcFh65m/regions.vcf.gz 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/regions.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/R6lXcFh65m/regions.tab.gz 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/R6lXcFh65m/regions.tab.gz /tmp/R6lXcFh65m/regions.vcf.gz 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/R6lXcFh65m/regions.bed /tmp/R6lXcFh65m/regions.vcf.gz 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/regions.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/R6lXcFh65m/regions.bed 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/R6lXcFh65m/regions.bed /tmp/R6lXcFh65m/regions.vcf.gz 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/R6lXcFh65m/regions.bed.gz /tmp/R6lXcFh65m/regions.vcf.gz 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/regions.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -T /tmp/R6lXcFh65m/regions.bed.gz 702s .. ok 702s 702s test_vcf_regions: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM %POS %REF,%ALT\n' -R /tmp/R6lXcFh65m/regions.bed.gz /tmp/R6lXcFh65m/regions.vcf.gz 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.hdr -c CHROM,POS,REF,ALT,ID,QUAL,INFO/T_INT,INFO/T_FLOAT,INDEL /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate2.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.hdr -c CHROM,POS,-,T_STR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate2.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.hdr -c CHROM,POS,-,T_STR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate2.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.hdr -c CHROM,FROM,TO,T_STR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate2.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.hdr -c CHROM,FROM,TO,T_STR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots.vcf.gz -c STR,ID,QUAL,FILTER /tmp/R6lXcFh65m/annotate.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots.vcf.gz -c STR,ID,QUAL,FILTER /tmp/R6lXcFh65m/annotate.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots2.vcf.gz -c ID,QUAL,FILTER,INFO,FMT /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots2.vcf.gz -c ID,QUAL,FILTER,INFO,FMT /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s A /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A B" /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "A C" /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots2.vcf.gz -c ID,QUAL,+FILTER,+INFO,FMT/GT -s "B C" /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -x ID,QUAL,^FILTER/fltA,FILTER/fltB,^INFO/AA,INFO/BB,^FMT/GT,FMT/PL /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -x FORMAT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -x FORMAT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots4.vcf.gz -c +INFO /tmp/R6lXcFh65m/annotate4.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots4.vcf.gz -c +INFO /tmp/R6lXcFh65m/annotate4.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots4.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate4.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots4.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate4.hdr -c CHROM,POS,REF,ALT,+FA,+FR,+IA,+IR,+SA,+SR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate4.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 702s .. ok 702s 702s test_vcf_annotate: 702s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots10.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate10.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots10.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate10.hdr -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate10.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots2.vcf.gz -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots2.vcf.gz -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots11.tab.gz -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots11.tab.gz -c CHROM,POS,FMT/FINT,FMT/FFLT,FMT/FSTR -s A /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots2.vcf.gz -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots2.vcf.gz -c AAA:=IINT,FMT/BBB:=FMT/FINT /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots2.vcf.gz -x INFO -c INFO/IINT /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots2.vcf.gz -x INFO -c INFO/IINT /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots2.vcf.gz -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots2.vcf.gz -x INFO -c INFO/IINT -e'POS=3000001' -k /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots11.vcf.gz -c FMT /tmp/R6lXcFh65m/annotate11.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots11.vcf.gz -c FMT /tmp/R6lXcFh65m/annotate11.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots2.vcf.gz -c FMT/newGT:=GT /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots2.vcf.gz -c FMT/newGT:=GT /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots12.vcf.gz -c FMT/GT:=newGT /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots12.vcf.gz -c FMT/GT:=newGT /tmp/R6lXcFh65m/annotate2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots13.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.hdr -c CHROM,BEG,END,ABC /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots13.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.hdr -c CHROM,BEG,END,ABC /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots13.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots13.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots13.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots13.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.hdr -c CHROM,BEG,END,ABC -l ABC:unique /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate13.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -x FILTER/XX,INFO/XX --force /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate14.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -x FILTER/XX,INFO/XX --force /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate14.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate15.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate15.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate15.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate15.hdr -s SAMPLE1 -c CHROM,FROM,TO,FMT/FOO,BAR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate15.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate15.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate15.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate15.tab.gz -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate15.hdr -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate15.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate15.tab.gz -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=' -H '##INFO=' /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate15.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate15.tab.gz -s SAMPLE2 -c CHROM,FROM,TO,FMT/FOO,BAR -H '##FORMAT=' -H '##INFO=' /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate15.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -x FILTER /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate16.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -x FILTER /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate16.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate17.1.tab.gz -c CHROM,BEG,END,A,B -l A:append,B:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate17.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate17.1.tab.gz -c CHROM,BEG,END,A,B -l A:append,B:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate17.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate17.1.tab.gz -c CHROM,BEG,END,A,B -l A:append,B:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate17.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate17.1.tab.gz -c CHROM,BEG,END,A,B -l A:append,B:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate17.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate17.3.tab.gz -c CHROM,BEG,END,A,B -l A:append,B:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate17.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate17.3.tab.gz -c CHROM,BEG,END,A,B -l A:append,B:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate17.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate18.1.tab.gz -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate18.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate18.1.tab.gz -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate18.1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate18.2.tab.gz -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate18.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate18.2.tab.gz -c CHROM,BEG,END,A,B,C,D,E -l A:sum,B:avg,C:min,D:max,E:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate18.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c INFO/ID:=ID,INFO/INFO_ID:=INFO/ID,ID,=ID:=INFO/ID /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c FILTER,INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c INFO/FILTER:=FILTER,INFO/INFO_FILTER:=INFO/FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -c INFO/FILTER:=FILTER /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate19.dst.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -c INFO/FILTER:=FILTER /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate19.dst.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c INFO/FILTER:=FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c INFO/FILTER:=FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c INFO/FILTER:=./FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c INFO/FILTER:=./FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c INFO/FILTER:=./FILTER,FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c INFO/FILTER:=./FILTER,FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c FILTER,INFO/FILTER:=./FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate19.src.vcf.gz -c FILTER,INFO/FILTER:=./FILTER /tmp/R6lXcFh65m/annotate19.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate20.src.vcf.gz -c FMT/GT /tmp/R6lXcFh65m/annotate20.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate20.src.vcf.gz -c FMT/GT /tmp/R6lXcFh65m/annotate20.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate20.src.vcf.gz -c +FMT/GT /tmp/R6lXcFh65m/annotate20.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate20.src.vcf.gz -c +FMT/GT /tmp/R6lXcFh65m/annotate20.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate20.src.vcf.gz -c -FMT/GT /tmp/R6lXcFh65m/annotate20.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate20.src.vcf.gz -c -FMT/GT /tmp/R6lXcFh65m/annotate20.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate.multi.tab.gz -c CHROM,POS,REF,ALT,ANN -l ANN:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.multi.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate.multi.tab.gz -c CHROM,POS,REF,ALT,ANN -l ANN:append /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.multi.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate.missing-append.tab.gz -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing-append.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate.missing-append.tab.gz -c CHROM,POS,REF,ALT,STR,INT,FLT -l STR:append-missing,INT:append-missing,FLT:append-missing /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing-append.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots9.tab.gz -c CHROM,POS,REF,ALT,+ID /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate9.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots9.tab.gz -c CHROM,POS,REF,ALT,+ID /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate9.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate --rename-annots /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate21.txt /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate21.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob --rename-annots /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate21.txt /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate21.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate21.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -c XX:=FORMAT/X-X,YY:=FORMAT/Y-Y,AA:=FORMAT/A-A,AA:=INFO/A-A,BB:=INFO/B-B,XX:=INFO/X-X,YY:=INFO/Y-Y,fltA:=FILTER/flt-A,fltB:=FILTER/flt-B,fltX:=FILTER/flt-X,fltY:=FILTER/flt-Y /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate21.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate22.vcf.gz -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/R6lXcFh65m/annotate22.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate22.vcf.gz -c FMT/XX,INFO/XX -x FMT/XX,INFO/XX /tmp/R6lXcFh65m/annotate22.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate23.tab.gz -c CHROM,POS,~ID,REF,ALT,INFO/END /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate23.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate23.tab.gz -c CHROM,POS,~ID,REF,ALT,INFO/END /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate23.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate24.src.vcf.gz -c XX /tmp/R6lXcFh65m/annotate24.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate24.src.vcf.gz -c XX /tmp/R6lXcFh65m/annotate24.dst.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate25.tab.gz -c CHROM,POS,ID,REF,ALT,~INFO/END /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate25.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate25.tab.gz -c CHROM,POS,ID,REF,ALT,~INFO/END /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate25.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate26.tab.gz -c CHROM,POS,~POS /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate26.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate26.tab.gz -c CHROM,POS,~POS /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate26.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,TSTR,TFLT,TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,.TSTR,.TFLT,.TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,.+TSTR,.+TFLT,.+TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,+TSTR,+TFLT,+TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,.=TSTR,.=TFLT,.=TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate.missing.tab.gz -c CHROM,POS,REF,ALT,=TSTR,=TFLT,=TINT /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.missing.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots.olap.tab.gz -c CHROM,BEG,END,DB -l DB:unique /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.olap.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots.olap.tab.gz -c CHROM,BEG,END,DB -l DB:unique /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.olap.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots.olap.tab.gz -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.olap.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots.olap.tab.gz -c CHROM,BEG,END,DB -l DB:unique --min-overlap 0.4:0.5 -m XXX /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.olap.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots.id.vcf.gz -c ALT /tmp/R6lXcFh65m/annotate.id.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots.id.vcf.gz -c ALT /tmp/R6lXcFh65m/annotate.id.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots.id.vcf.gz -c +ALT /tmp/R6lXcFh65m/annotate.id.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots.id.vcf.gz -c +ALT /tmp/R6lXcFh65m/annotate.id.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots.id.2.vcf.gz --pair-logic some -c +ID /tmp/R6lXcFh65m/annotate.id.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots.id.2.vcf.gz --pair-logic some -c +ID /tmp/R6lXcFh65m/annotate.id.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 703s .. ok 703s 703s test_vcf_annotate: 703s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots.id.2.vcf.gz --pair-logic any -c +ID /tmp/R6lXcFh65m/annotate.id.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots.id.2.vcf.gz --pair-logic any -c +ID /tmp/R6lXcFh65m/annotate.id.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annotate27.tab.gz -c CHROM,POS,REF,ALT,EVIDENCE /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate27.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annotate27.tab.gz -c CHROM,POS,REF,ALT,EVIDENCE /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate27.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots28.tab.gz -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate28.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots28.tab.gz -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1,smpl2 /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate28.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots28.tab.gz -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate28.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots28.tab.gz -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2,smpl1 /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate28.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots28.tab.gz -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate28.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots28.tab.gz -c CHROM,POS,REF,ALT,FMT/TEST -s smpl1 /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate28.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots28.tab.gz -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate28.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots28.tab.gz -c CHROM,POS,REF,ALT,FMT/TEST -s smpl2 /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate28.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -m XXX /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -m XXX /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots34.tab.gz -c CHROM,FROM,TO,INFO/END -H '##INFO=' /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate34.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots34.tab.gz -c CHROM,FROM,TO,INFO/END -H '##INFO=' /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate34.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -a /tmp/R6lXcFh65m/annots-mark.bed.gz -c CHROM,FROM,TO -m TAG /tmp/autopkgtest.mS6ftt/build.qze/src/test/annots-mark.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_annotate: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate -Ob -a /tmp/R6lXcFh65m/annots-mark.bed.gz -c CHROM,FROM,TO -m TAG /tmp/autopkgtest.mS6ftt/build.qze/src/test/annots-mark.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version /tmp/R6lXcFh65m/concat.1.a.vcf.gz /tmp/R6lXcFh65m/concat.1.b.vcf.gz 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob /tmp/R6lXcFh65m/concat.1.a.vcf.gz /tmp/R6lXcFh65m/concat.1.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version /tmp/R6lXcFh65m/concat.1.a.bcf /tmp/R6lXcFh65m/concat.1.b.bcf 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob /tmp/R6lXcFh65m/concat.1.a.bcf /tmp/R6lXcFh65m/concat.1.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -a /tmp/R6lXcFh65m/concat.2.a.vcf.gz /tmp/R6lXcFh65m/concat.2.b.vcf.gz 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -a /tmp/R6lXcFh65m/concat.2.a.vcf.gz /tmp/R6lXcFh65m/concat.2.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -a /tmp/R6lXcFh65m/concat.2.a.bcf /tmp/R6lXcFh65m/concat.2.b.bcf 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -a /tmp/R6lXcFh65m/concat.2.a.bcf /tmp/R6lXcFh65m/concat.2.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -aD /tmp/R6lXcFh65m/concat.2.a.vcf.gz /tmp/R6lXcFh65m/concat.2.b.vcf.gz 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -aD /tmp/R6lXcFh65m/concat.2.a.vcf.gz /tmp/R6lXcFh65m/concat.2.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -aD /tmp/R6lXcFh65m/concat.2.a.bcf /tmp/R6lXcFh65m/concat.2.b.bcf 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -aD /tmp/R6lXcFh65m/concat.2.a.bcf /tmp/R6lXcFh65m/concat.2.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -l --ligate-warn /tmp/R6lXcFh65m/concat.3.a.vcf.gz /tmp/R6lXcFh65m/concat.3.b.vcf.gz /tmp/R6lXcFh65m/concat.3.0.vcf.gz /tmp/R6lXcFh65m/concat.3.c.vcf.gz /tmp/R6lXcFh65m/concat.3.d.vcf.gz /tmp/R6lXcFh65m/concat.3.e.vcf.gz /tmp/R6lXcFh65m/concat.3.f.vcf.gz 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -l --ligate-warn /tmp/R6lXcFh65m/concat.3.a.vcf.gz /tmp/R6lXcFh65m/concat.3.b.vcf.gz /tmp/R6lXcFh65m/concat.3.0.vcf.gz /tmp/R6lXcFh65m/concat.3.c.vcf.gz /tmp/R6lXcFh65m/concat.3.d.vcf.gz /tmp/R6lXcFh65m/concat.3.e.vcf.gz /tmp/R6lXcFh65m/concat.3.f.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -l --ligate-warn /tmp/R6lXcFh65m/concat.3.a.bcf /tmp/R6lXcFh65m/concat.3.b.bcf /tmp/R6lXcFh65m/concat.3.0.bcf /tmp/R6lXcFh65m/concat.3.c.bcf /tmp/R6lXcFh65m/concat.3.d.bcf /tmp/R6lXcFh65m/concat.3.e.bcf /tmp/R6lXcFh65m/concat.3.f.bcf 704s .. ok 704s 704s test_vcf_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -l --ligate-warn /tmp/R6lXcFh65m/concat.3.a.bcf /tmp/R6lXcFh65m/concat.3.b.bcf /tmp/R6lXcFh65m/concat.3.0.bcf /tmp/R6lXcFh65m/concat.3.c.bcf /tmp/R6lXcFh65m/concat.3.d.bcf /tmp/R6lXcFh65m/concat.3.e.bcf /tmp/R6lXcFh65m/concat.3.f.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 704s Random seed for test_naive_concat: 3846107309 704s .. ok 704s 704s test_naive_concat: 704s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --naive-force /tmp/R6lXcFh65m/naive_concat.0.bcf /tmp/R6lXcFh65m/naive_concat.1.bcf /tmp/R6lXcFh65m/naive_concat.2.bcf /tmp/R6lXcFh65m/naive_concat.3.bcf /tmp/R6lXcFh65m/naive_concat.4.bcf /tmp/R6lXcFh65m/naive_concat.5.bcf /tmp/R6lXcFh65m/naive_concat.6.bcf /tmp/R6lXcFh65m/naive_concat.7.bcf /tmp/R6lXcFh65m/naive_concat.8.bcf /tmp/R6lXcFh65m/naive_concat.9.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 705s .. ok 705s 705s test_naive_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --naive /tmp/R6lXcFh65m/naive_concat.0.vcf.gz /tmp/R6lXcFh65m/naive_concat.1.vcf.gz /tmp/R6lXcFh65m/naive_concat.2.vcf.gz /tmp/R6lXcFh65m/naive_concat.3.vcf.gz /tmp/R6lXcFh65m/naive_concat.4.vcf.gz /tmp/R6lXcFh65m/naive_concat.5.vcf.gz /tmp/R6lXcFh65m/naive_concat.6.vcf.gz /tmp/R6lXcFh65m/naive_concat.7.vcf.gz /tmp/R6lXcFh65m/naive_concat.8.vcf.gz /tmp/R6lXcFh65m/naive_concat.9.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -H 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -l /tmp/R6lXcFh65m/concat.4.a.vcf.gz /tmp/R6lXcFh65m/concat.4.b.vcf.gz 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -l /tmp/R6lXcFh65m/concat.4.a.vcf.gz /tmp/R6lXcFh65m/concat.4.b.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -l /tmp/R6lXcFh65m/concat.4.a.bcf /tmp/R6lXcFh65m/concat.4.b.bcf 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -l /tmp/R6lXcFh65m/concat.4.a.bcf /tmp/R6lXcFh65m/concat.4.b.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -l --ligate-warn /tmp/R6lXcFh65m/concat.5.a.vcf.gz /tmp/R6lXcFh65m/concat.5.b.vcf.gz /tmp/R6lXcFh65m/concat.5.c.vcf.gz 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -l --ligate-warn /tmp/R6lXcFh65m/concat.5.a.vcf.gz /tmp/R6lXcFh65m/concat.5.b.vcf.gz /tmp/R6lXcFh65m/concat.5.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -l --ligate-warn /tmp/R6lXcFh65m/concat.5.a.bcf /tmp/R6lXcFh65m/concat.5.b.bcf /tmp/R6lXcFh65m/concat.5.c.bcf 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -l --ligate-warn /tmp/R6lXcFh65m/concat.5.a.bcf /tmp/R6lXcFh65m/concat.5.b.bcf /tmp/R6lXcFh65m/concat.5.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -l --ligate-force /tmp/R6lXcFh65m/concat.5.a.bcf /tmp/R6lXcFh65m/concat.5.b.bcf /tmp/R6lXcFh65m/concat.5.c.bcf 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -l --ligate-force /tmp/R6lXcFh65m/concat.5.a.bcf /tmp/R6lXcFh65m/concat.5.b.bcf /tmp/R6lXcFh65m/concat.5.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -G -a -D /tmp/R6lXcFh65m/concat.5.a.vcf.gz /tmp/R6lXcFh65m/concat.5.b.vcf.gz /tmp/R6lXcFh65m/concat.5.c.vcf.gz 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -G -a -D /tmp/R6lXcFh65m/concat.5.a.vcf.gz /tmp/R6lXcFh65m/concat.5.b.vcf.gz /tmp/R6lXcFh65m/concat.5.c.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat --no-version -G -a -D /tmp/R6lXcFh65m/concat.5.a.bcf /tmp/R6lXcFh65m/concat.5.b.bcf /tmp/R6lXcFh65m/concat.5.c.bcf 705s .. ok 705s 705s test_vcf_concat: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools concat -Ob -G -a -D /tmp/R6lXcFh65m/concat.5.a.bcf /tmp/R6lXcFh65m/concat.5.b.bcf /tmp/R6lXcFh65m/concat.5.c.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.hdr /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.hdr | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.hdr /tmp/R6lXcFh65m/reheader.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/reheader.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.hdr | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.hdr /tmp/R6lXcFh65m/reheader.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/reheader.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.hdr | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples /tmp/R6lXcFh65m/reheader.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/reheader.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples /tmp/R6lXcFh65m/reheader.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/reheader.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples2 /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples2 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples2 /tmp/R6lXcFh65m/reheader.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/reheader.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples2 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples2 /tmp/R6lXcFh65m/reheader.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/reheader.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples2 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples3 /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples3 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples3 /tmp/R6lXcFh65m/reheader.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/reheader.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples3 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples3 /tmp/R6lXcFh65m/reheader.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/reheader.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples3 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples4 /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples4 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples4 /tmp/R6lXcFh65m/reheader.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/reheader.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples4 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples4 /tmp/R6lXcFh65m/reheader.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/reheader.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -s /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.samples4 | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.empty.hdr /tmp/autopkgtest.mS6ftt/build.qze/src/test/empty.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/autopkgtest.mS6ftt/build.qze/src/test/empty.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.empty.hdr | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.empty.hdr /tmp/R6lXcFh65m/empty.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/empty.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.empty.hdr | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.empty.hdr /tmp/R6lXcFh65m/empty.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s cat /tmp/R6lXcFh65m/empty.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.empty.hdr | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.fai /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.fai /tmp/R6lXcFh65m/reheader.2.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.fai /tmp/R6lXcFh65m/reheader.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.2.hdr -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.fai /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.2.hdr -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.fai /tmp/R6lXcFh65m/reheader.2.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -h /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.2.hdr -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.fai /tmp/R6lXcFh65m/reheader.2.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.3.fai /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.3.fai /tmp/R6lXcFh65m/reheader.3.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_vcf_reheader: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools reheader -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/reheader.3.fai /tmp/R6lXcFh65m/reheader.3.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view --no-version 705s .. ok 705s 705s test_rename_chrs: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate --rename-chrs /tmp/R6lXcFh65m/rename.map -Ov /tmp/R6lXcFh65m/annotate.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM\t%POS\n' 705s .. ok 705s 705s test_rename_chrs: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate --rename-chrs /tmp/R6lXcFh65m/rename.map -Ob /tmp/R6lXcFh65m/annotate.bcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM\t%POS\n' 705s .. ok 705s 705s test_rename_chrs: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate --rename-chrs /tmp/R6lXcFh65m/rename.map -Ov /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM\t%POS\n' 705s .. ok 705s 705s test_rename_chrs: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools annotate --rename-chrs /tmp/R6lXcFh65m/rename.map -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/annotate.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%CHROM\t%POS\n' 705s .. ok 705s 705s test_vcf_convert: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. /tmp/R6lXcFh65m/convert.vcf.gz 705s .. ok 705s 705s test_vcf_convert: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. 705s .. ok 705s 705s test_vcf_convert: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --vcf-ids /tmp/R6lXcFh65m/convert.vcf.gz 705s .. ok 705s 705s test_vcf_convert: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --vcf-ids 705s .. ok 705s 705s test_vcf_convert: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --vcf-ids --3N6 /tmp/R6lXcFh65m/convert.vcf.gz 705s .. ok 705s 705s test_vcf_convert: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --vcf-ids --3N6 705s .. ok 705s 705s test_vcf_convert: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g .,- /tmp/R6lXcFh65m/convert.vcf.gz 705s .. ok 705s 705s test_vcf_convert: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g .,- 705s .. ok 705s 705s test_vcf_convert_hs2vcf: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --vcf-ids -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.ids.gen,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.samples | grep -v ^## 705s .. ok 705s 705s test_vcf_convert_hs2vcf: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --vcf-ids -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.ids.gen,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.samples -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^## 705s .. ok 705s 705s test_vcf_convert_hs2vcf: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.ids.gen,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.samples | grep -v ^## 705s .. ok 705s 705s test_vcf_convert_hs2vcf: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.ids.gen,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.samples -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^## 705s .. ok 705s 705s test_vcf_convert_hs2vcf: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --3N6 -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.ids.3N6.gen,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.samples | grep -v ^## 705s .. ok 705s 705s test_vcf_convert_hs2vcf: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --3N6 -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.ids.3N6.gen,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.samples -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^## 705s .. ok 705s 705s test_vcf_convert_hs2vcf: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --vcf-ids -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.ids.gen.rev,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.samples | grep -v ^## 705s .. ok 705s 705s test_vcf_convert_hs2vcf: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --vcf-ids -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.ids.gen.rev,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.samples -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^## 705s .. ok 705s 705s test_vcf_convert_hs2vcf: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.ids.gen.rev,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.samples | grep -v ^## 705s .. ok 705s 705s test_vcf_convert_hs2vcf: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.ids.gen.rev,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.gs.gt.samples -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^## 705s .. ok 705s 705s test_vcf_convert: 705s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --tag PL /tmp/R6lXcFh65m/convert.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --tag PL 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g .,- --tag PL /tmp/R6lXcFh65m/convert.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g .,- --tag PL 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --vcf-ids /tmp/R6lXcFh65m/check.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/check.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --vcf-ids 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g .,- --vcf-ids /tmp/R6lXcFh65m/check.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/check.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g .,- --vcf-ids 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --3N6 /tmp/R6lXcFh65m/check.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/check.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --3N6 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g .,- --3N6 /tmp/R6lXcFh65m/check.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/check.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g .,- --3N6 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --3N6 --vcf-ids /tmp/R6lXcFh65m/check.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/check.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g -,. --3N6 --vcf-ids 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g .,- --3N6 --vcf-ids /tmp/R6lXcFh65m/check.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/check.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -g .,- --3N6 --vcf-ids 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -h -,.,. /tmp/R6lXcFh65m/convert.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -h -,.,. 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -h .,-,. /tmp/R6lXcFh65m/convert.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -h .,-,. 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -h .,-,. --vcf-ids /tmp/R6lXcFh65m/convert.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -h .,-,. --vcf-ids 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -h .,.,- /tmp/R6lXcFh65m/convert.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -h .,.,- 706s .. ok 706s 706s test_vcf_convert_hls2vcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -H /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hls.gt.hap,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hls.gt.legend,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hls.gt.samples | grep -v ^## 706s .. ok 706s 706s test_vcf_convert_hls2vcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -H /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hls.gt.hap,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hls.gt.legend,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hls.gt.samples -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^## 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --haplegendsample -,.,. /tmp/R6lXcFh65m/convert.hap-missing.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.hap-missing.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --haplegendsample -,.,. 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --hapsample -,. /tmp/R6lXcFh65m/convert.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --hapsample -,. 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --hapsample -,. --vcf-ids /tmp/R6lXcFh65m/convert.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --hapsample -,. --vcf-ids 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --hapsample .,- /tmp/R6lXcFh65m/convert.vcf.gz 706s .. ok 706s 706s test_vcf_convert: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --hapsample .,- 706s .. ok 706s 706s test_vcf_convert_hs2vcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --hapsample2vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hs.gt.hap,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hs.gt.samples | grep -v ^## 706s .. ok 706s 706s test_vcf_convert_hs2vcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --hapsample2vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hs.gt.hap,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hs.gt.samples -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^## 706s .. ok 706s 706s test_vcf_convert_hs2vcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --vcf-ids --hapsample2vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hs.gt.ids.hap,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hs.gt.samples | grep -v ^## 706s .. ok 706s 706s test_vcf_convert_hs2vcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --vcf-ids --hapsample2vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hs.gt.ids.hap,/tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.hs.gt.samples -Ou | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^## 706s .. ok 706s 706s test_vcf_convert_gvcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --no-version --gvcf2vcf -i'FILTER="PASS"' -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa /tmp/R6lXcFh65m/convert.gvcf.vcf.gz 706s .. ok 706s 706s test_vcf_convert_gvcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view -Ob /tmp/R6lXcFh65m/convert.gvcf.vcf.gz | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --gvcf2vcf -i'FILTER="PASS"' -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/gvcf.fa | grep -v ^##bcftools 706s .. ok 706s 706s test_vcf_convert_tsv2vcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --no-version -c ID,CHROM,POS,AA -s SAMPLE1 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/23andme.fa --tsv2vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.23andme 706s .. ok 706s 706s test_vcf_convert_tsv2vcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -Ou -c ID,CHROM,POS,AA -s SAMPLE1 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/23andme.fa --tsv2vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.23andme | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 706s .. ok 706s 706s test_vcf_convert_tsv2vcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert --no-version -c -,CHROM,POS,REF,ALT -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/23andme.fa --tsv2vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.tsv 706s .. ok 706s 706s test_vcf_convert_tsv2vcf: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools convert -Ou -c -,CHROM,POS,REF,ALT -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/23andme.fa --tsv2vcf /tmp/autopkgtest.mS6ftt/build.qze/src/test/convert.tsv | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools_ 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab 706s .. ok 706s 706s test_vcf_consensus_chain: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab -c /tmp/R6lXcFh65m/consensus.1.chain.new >/dev/null; cat /tmp/R6lXcFh65m/consensus.1.chain.new 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -H 1 -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -H 1 -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab 706s .. ok 706s 706s test_vcf_consensus_chain: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -H 1 -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab -c /tmp/R6lXcFh65m/consensus.2.chain.new >/dev/null; cat /tmp/R6lXcFh65m/consensus.2.chain.new 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -I -s - -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -I -s - -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -I -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab --mask-with X -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab --mask-with lc 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -I -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab --mask-with X -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab --mask-with lc 706s .. ok 706s 706s test_vcf_consensus_chain: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -I -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.tab -c /tmp/R6lXcFh65m/consensus.3.chain.new >/dev/null; cat /tmp/R6lXcFh65m/consensus.3.chain.new 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -H 1 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -H 1 706s .. ok 706s 706s test_vcf_consensus_chain: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -H 1 -c /tmp/R6lXcFh65m/consensus.4.chain.new >/dev/null; cat /tmp/R6lXcFh65m/consensus.4.chain.new 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus2.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -H 1 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus2.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -H 1 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus2.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -H 2 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus2.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -H 2 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/empty.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/empty.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus3.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -H 2 -M "?" 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus3.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -H 2 -M "?" 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus3.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -H 2 -M "?" -p xx_ 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus3.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -H 2 -M "?" -p xx_ 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus4.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus4.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus5.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus5.fa --haplotype LA 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus5.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus5.fa --haplotype LA 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus6.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus6.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus6.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus6.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 2 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 2 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 4 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 4 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 2pIu 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 2pIu 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 4pIu 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 4pIu 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 1 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 1 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 3 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 3 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 1pIu 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 1pIu 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 3pIu 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus7.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus7.fa -H 3pIu 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -a . 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -a . 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"' 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -a . -i 'type="snp" || type="ref"' 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -a . -i 'ALT!=""' 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -a . -i 'ALT!=""' 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -a . -e 'MinDP>15' 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -a . -e 'MinDP>15' 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -a . -e 'MinDP<15' 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus8.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -a . -e 'MinDP<15' 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.9.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.9.1.fa -H A 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.9.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.9.1.fa -H A 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.9.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.9.2.fa -H A 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.9.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.9.2.fa -H A 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.10.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.9.1.fa -H A 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.10.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.9.1.fa -H A 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.10.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.9.2.fa -H A 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.10.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.9.2.fa -H A 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.11.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.11.fa -s smpl 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.11.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.11.fa -s smpl 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.11.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.11.fa -s smpl -a N 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.11.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.11.fa -s smpl -a N 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.12.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.12.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.12.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.12.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.13.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.13.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.13.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.13.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.14.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.14.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.14.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.14.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.12.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.12.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.12.fa -s - --mark-del - --mark-ins uc --mark-snv uc 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.12.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv : 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.12.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.12.fa -s - --mark-del - --mark-ins + --mark-snv : 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.15.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.15.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.15.fa -H I --mark-ins lc --mark-snv lc 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.16.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -I 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.16.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -s - -I 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.16.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -H I 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.16.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.fa -H I 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.17.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -s - -M N -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.17.bed 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.17.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus2.fa -s - -M N -m /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.17.bed 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.18.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.18.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.18.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.18.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.19.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.19.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.19.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.19.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.20.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.20.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.20.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.20.fa -s - 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.20.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.20.fa 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.20.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.20.fa 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.20.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.20.fa -M . -s b 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.20.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.20.fa -M . -s b 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.20.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.20.fa -M . -s a 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.20.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.20.fa -M . -s a 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.21.vcf.gz -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.21.fa 706s .. ok 706s 706s test_vcf_consensus: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools consensus /tmp/R6lXcFh65m/consensus.21.bcf -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/consensus.21.fa 706s .. ok 706s 706s test_mpileup: 706s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 707s .. ok 707s 707s test_mpileup: 707s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 707s .. ok 707s 707s test_mpileup: 707s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -b /tmp/R6lXcFh65m/mpileup.bam.list --no-version | grep -v ^##reference 707s .. ok 707s 707s test_mpileup: 707s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob -b /tmp/R6lXcFh65m/mpileup.bam.urllist | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 707s .. ok 707s 707s test_mpileup: 707s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 707s .. ok 707s 707s test_mpileup: 707s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 707s .. ok 707s 707s test_mpileup: 707s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -b /tmp/R6lXcFh65m/mpileup.cram.list --no-version | grep -v ^##reference 708s .. ok 708s 708s test_mpileup: 708s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob -b /tmp/R6lXcFh65m/mpileup.cram.urllist | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 708s .. ok 708s 708s test_mpileup: 708s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 708s .. ok 708s 708s test_mpileup: 708s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 708s .. ok 708s 708s test_mpileup: 708s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 708s .. ok 708s 708s test_mpileup: 708s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 708s .. ok 708s 708s test_mpileup: 708s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam | grep -v ^##bcftools | grep -v ^##reference 708s .. ok 708s 708s test_mpileup: 708s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 709s .. ok 709s 709s test_mpileup: 709s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram | grep -v ^##bcftools | grep -v ^##reference 709s .. ok 709s 709s test_mpileup: 709s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -B --ff 0x14 -r17:1050-1060 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 709s .. ok 709s 709s test_mpileup: 709s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 709s .. ok 709s 709s test_mpileup: 709s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 709s .. ok 709s 709s test_mpileup: 709s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 709s .. ok 709s 709s test_mpileup: 709s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DPR,DV,DP4,INFO/DPR,SP -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 709s .. ok 709s 709s test_mpileup: 709s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 710s .. ok 710s 710s test_mpileup: 710s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 710s .. ok 710s 710s test_mpileup: 710s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 710s .. ok 710s 710s test_mpileup: 710s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,AD,ADF,ADR,SP,INFO/AD,INFO/ADF,INFO/ADR -r17:100-600 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 710s .. ok 710s 710s test_mpileup: 710s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 710s .. ok 710s 710s test_mpileup: 710s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 710s .. ok 710s 710s test_mpileup: 710s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 711s .. ok 711s 711s test_mpileup: 711s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-600 --gvcf 0,2,5 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 711s .. ok 711s 711s test_mpileup: 711s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 711s .. ok 711s 711s test_mpileup: 711s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 711s .. ok 711s 711s test_mpileup: 711s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 711s .. ok 711s 711s test_mpileup: 711s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a DP,DV -r17:100-200,17:201-300,17:301-400,17:401-500,17:501-600 --gvcf 0,2,5 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 711s .. ok 711s 711s test_mpileup: 711s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 711s .. ok 711s 711s test_mpileup: 711s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 712s .. ok 712s 712s test_mpileup: 712s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 712s .. ok 712s 712s test_mpileup: 712s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -s HG00101,HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 712s .. ok 712s 712s test_mpileup: 712s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 712s .. ok 712s 712s test_mpileup: 712s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 712s .. ok 712s 712s test_mpileup: 712s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 712s .. ok 712s 712s test_mpileup: 712s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 712s .. ok 713s 713s test_mpileup: 713s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 713s .. ok 713s 713s test_mpileup: 713s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 713s .. ok 713s 713s test_mpileup: 713s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 713s .. ok 713s 713s test_mpileup: 713s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -s ^HG00101,HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 713s .. ok 713s 713s test_mpileup: 713s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -S ^/tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 713s .. ok 713s 713s test_mpileup: 713s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -S ^/tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 713s .. ok 713s 713s test_mpileup: 713s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -S ^/tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 713s .. ok 713s 713s test_mpileup: 713s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -r17:100-150 -S ^/tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 714s .. ok 714s 714s test_mpileup: 714s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.9.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference 714s .. ok 714s 714s test_mpileup: 714s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.9.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 714s .. ok 714s 714s test_mpileup: 714s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.9.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 714s .. ok 714s 714s test_mpileup: 714s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.9.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 714s .. ok 714s 714s test_mpileup: 714s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.9.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 714s .. ok 714s 714s test_mpileup: 714s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -S /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.9.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 715s .. ok 715s 715s test_mpileup: 715s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.10.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference 715s .. ok 715s 715s test_mpileup: 715s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.10.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 715s .. ok 715s 715s test_mpileup: 715s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.10.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 715s .. ok 715s 715s test_mpileup: 715s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.10.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 715s .. ok 715s 715s test_mpileup: 715s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.10.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 715s .. ok 715s 715s test_mpileup: 715s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t17:100-150 -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.10.samples -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.1.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.2.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 715s .. ok 715s 715s test_mpileup: 715s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam | grep -v ^##bcftools | grep -v ^##reference 716s .. ok 716s 716s test_mpileup: 716s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 716s .. ok 716s 716s test_mpileup: 716s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | grep -v ^##bcftools | grep -v ^##reference 716s .. ok 716s 716s test_mpileup: 716s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 716s .. ok 716s 716s test_mpileup: 716s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | grep -v ^##bcftools | grep -v ^##reference 716s .. ok 716s 716s test_mpileup: 716s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 716s .. ok 716s 716s test_mpileup: 716s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference 717s .. ok 717s 717s test_mpileup: 717s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 717s .. ok 717s 717s test_mpileup: 717s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference 717s .. ok 717s 717s test_mpileup: 717s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 717s .. ok 717s 717s test_mpileup: 717s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference 717s .. ok 717s 717s test_mpileup: 717s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s HG00102 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 717s .. ok 717s 717s test_mpileup: 717s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s ^HG99999 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference 718s .. ok 718s 718s test_mpileup: 718s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s ^HG99999 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 718s .. ok 718s 718s test_mpileup: 718s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s ^HG99999 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference 718s .. ok 718s 718s test_mpileup: 718s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s ^HG99999 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 718s .. ok 718s 718s test_mpileup: 718s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s ^HG99999 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference 718s .. ok 718s 718s test_mpileup: 718s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -s ^HG99999 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 718s .. ok 718s 718s test_mpileup: 718s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference 719s .. ok 719s 719s test_mpileup: 719s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 719s .. ok 719s 719s test_mpileup: 719s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference 719s .. ok 719s 719s test_mpileup: 719s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 719s .. ok 719s 719s test_mpileup: 719s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference 719s .. ok 719s 719s test_mpileup: 719s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 722s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.sam | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.sam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.bam | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.cram | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -G /tmp/autopkgtest.mS6ftt/build.qze/src/test/mplp.11.rgs -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.ref.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.3.cram /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup.4.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.sam | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.bam | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.cram | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.1.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.bam | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.cram | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a AD -r 11:75 --ambig-reads incAD0 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/indel-AD.2.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a INFO/SCR,FMT/SCR -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.bam | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a INFO/SCR,FMT/SCR -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 723s .. ok 723s 723s test_mpileup: 723s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a INFO/SCR,FMT/SCR -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.cram | grep -v ^##bcftools | grep -v ^##reference 724s .. ok 724s 724s test_mpileup: 724s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a INFO/SCR,FMT/SCR -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.cram | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 724s .. ok 724s 724s test_mpileup: 724s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference 724s .. ok 724s 724s test_mpileup: 724s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t 1:100 --skip-all-set PAIRED,PROPER_PAIR,MREVERSE -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-filter.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 724s .. ok 724s 724s test_mpileup: 724s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t 1:100 --skip-any-set READ1 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference 724s .. ok 724s 724s test_mpileup: 724s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t 1:100 --skip-any-set READ1 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-filter.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 724s .. ok 724s 724s test_mpileup: 724s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t 1:100 --skip-all-unset READ1 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference 724s .. ok 724s 724s test_mpileup: 724s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t 1:100 --skip-all-unset READ1 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-filter.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 725s .. ok 725s 725s test_mpileup: 725s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t 1:100 --skip-any-unset READ1 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-filter.sam | grep -v ^##bcftools | grep -v ^##reference 725s .. ok 725s 725s test_mpileup: 725s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -t 1:100 --skip-any-unset READ1 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-SCR.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/mpileup-filter.sam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 725s .. ok 725s 725s test_mpileup: 725s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a INFO/NMBZ -r chr19:69-99 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.1.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.1.bam | grep -v ^##bcftools | grep -v ^##reference 725s .. ok 725s 725s test_mpileup: 725s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a INFO/NMBZ -r chr19:69-99 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.1.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.1.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 725s .. ok 725s 725s test_mpileup: 725s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a INFO/NMBZ -r chr6:75 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.2.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.2.bam | grep -v ^##bcftools | grep -v ^##reference 725s .. ok 725s 725s test_mpileup: 725s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a INFO/NMBZ -r chr6:75 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.2.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.2.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 725s .. ok 725s 725s test_mpileup: 725s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a INFO/NMBZ -r chr16:75 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.3.fa /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.3.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.3.2.bam | grep -v ^##bcftools | grep -v ^##reference 726s .. ok 726s 726s test_mpileup: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools mpileup -a INFO/NMBZ -r chr16:75 -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.3.fa -Ob /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.3.1.bam /tmp/autopkgtest.mS6ftt/build.qze/src/test/mpileup/annot-NMBZ.3.2.bam | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools view | grep -v ^##bcftools | grep -v ^##reference 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.gff3 /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.chr.gff3 /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.2.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.2.gff --ncsq 64 /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort 726s .. ok 726s 726s test_csq: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.nchr.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq.ychr.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%TBCSQ\n]' | perl -pe 's/[\t,]/\n/g' | sort 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000227471/ENST00000227471.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000227471/ENST00000227471.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000227471/insert-splice-vs-frameshift.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000382647/ENST00000382647.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000382647/ENST00000382647.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000382647/synon-splice-region-insert.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000357367/ENST00000357367.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000357367/ENST00000357367.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000357367/stop-retained.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000409523/ENST00000409523.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000409523/ENST00000409523.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000409523/long-overlapping-del.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000303039/ENST00000303039.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000303039/ENST00000303039.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000303039/not-a-stop.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000303039/ENST00000303039.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000303039/ENST00000303039.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000303039/not-a-stop.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000413103/ENST00000413103.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000413103/ENST00000413103.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000413103/long-deletion.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000536784/ENST00000536784.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000536784/ENST00000536784.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000536784/not-a-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000536784/ENST00000536784.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000536784/ENST00000536784.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000536784/not-a-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000422159 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000422159.fa -g ENST00000422159.gff multiallelic.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000422159.fa -g short.gff multiallelic.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%REF\t%ALT\t%GT\t%TBCSQ\n]' | ../sort-csq -q 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000400151/ENST00000400151.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000400151/ENST00000400151.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000400151/long-del.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000373833/ENST00000373833.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000373833/ENST00000373833.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000373833/boundary-insertion.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000373833/ENST00000373833.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000373833/ENST00000373833.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000373833/boundary-insertion.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000420670/ENST00000420670.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000420670/ENST00000420670.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000420670/segfault.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000420670/ENST00000420670.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000420670/ENST00000420670.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000420670/start-stop-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000448695/ENST00000448695.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000448695/ENST00000448695.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000448695/syn-and-splice-reg.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000269081/ENST00000269081.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000269081/ENST00000269081.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000269081/stop-gained-not-inframe-insertion.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000360372/ENST00000360372.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000360372/ENST00000360372.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000360372/mnp.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENSG00000173376/ENSG00000173376.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENSG00000173376/ENSG00000173376.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENSG00000173376/synon.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000318249/ENST00000318249.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000318249/ENST00000318249.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000318249/start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000318249/ENST00000318249.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000318249/ENST00000318249.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000318249/start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000295641/ENST00000295641.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000295641/ENST00000295641.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000295641/not-a-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000295641/ENST00000295641.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000295641/ENST00000295641.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000295641/not-a-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 726s .. ok 726s 726s test_csq_real: 726s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000580206 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.ins-snv.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000580206.fa -g short.gff compound.ins-snv.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff single.ins-snv.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000580206.fa -g short.gff single.ins-snv.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-snv.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-snv.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000580206.fa -g short.gff single.del-snv.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000580206.fa -g ENST00000580206.gff compound.del-ins.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000580206.fa -g short.gff compound.del-ins.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENST00000580206.fa -g short.gff single.del-ins.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 726s .. ok 726s 726s test_csq_real: 726s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000479739/ENST00000479739.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000479739/ENST00000479739.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000479739/short-cds-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000479739/ENST00000479739.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000479739/ENST00000479739.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000479739/short-cds-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0002/EDUMMY0002.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0002/EDUMMY0002.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0002/boundaries.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000528237/ENST00000528237.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000528237/ENST00000528237.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000528237/retained-stop-incomplete-cds.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000545279/ENST00000545279.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000545279/ENST00000545279.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000545279/splice-region-insert.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000543077/ENST00000543077.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000543077/ENST00000543077.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000543077/not-a-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000543077/ENST00000543077.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000543077/ENST00000543077.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000543077/not-a-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000294661/ENST00000294661.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000294661/ENST00000294661.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000294661/non-coding-boundary.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000294661/ENST00000294661.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000294661/ENST00000294661.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000294661/non-coding-boundary.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000593942/ENST00000593942.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000593942/ENST00000593942.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000593942/last-codon-deletion.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000381157/ENST00000381157.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000381157/ENST00000381157.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000381157/haploid-diploid.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000420190/ENST00000420190.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000420190/ENST00000420190.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000420190/abort-in-csq-push.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%REF\t%ALT\t%TBCSQ\n]\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/ENST00000423372.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/ENST00000423372.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/snps.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/ENST00000423372.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/ENST00000423372.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/snps.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/ENST00000423372.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/ENST00000423372.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/insert3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/ENST00000423372.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/ENST00000423372.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000423372/insert3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000573314/ENST00000573314.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000573314/ENST00000573314.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000573314/ENST00000573314.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000573314/ENST00000573314.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000573314/incorrect-insertion-overlap.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000318249.2/ENST00000318249.2.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000318249.2/ENST00000318249.2.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000318249.2/synonymous-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000271583/ENST00000271583.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000271583/ENST00000271583.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000271583/splice-acceptor.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000436063/ENST00000436063.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000436063/ENST00000436063.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000436063/insert-before-utr.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000368801/ENST00000368801.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000368801/ENST00000368801.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000368801/compound-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000557788/ENST00000557788.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000557788/ENST00000557788.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000557788/long-overlap-del.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000624631/ENST00000624631.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000624631/ENST00000624631.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000624631/ambiguous.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000256452/ENST00000256452.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000256452/ENST00000256452.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000256452/intron.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENSMUST00000133836 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENSMUST00000133836.fa -g ENSMUST00000133836.gff filter-problem.vcf -i 'FILTER="PASS"' --phase m | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000301246/ENST00000301246.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000301246/ENST00000301246.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000301246/15bp-insert.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000379416 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.del-snp.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-del.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-ins.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff compound.ins-snp.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' ; echo ; /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -B 3 -f ENST00000379416.fa -g ENST00000379416.gff single.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0001/EDUMMY0001.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0001/EDUMMY0001.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0001/starts-with-1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0001/EDUMMY0001.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0001/EDUMMY0001.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0001/starts-with-1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000520868/ENST00000520868.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000520868/ENST00000520868.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000520868/long-deletion.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EMN908947 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f EMN908947.fa -g simple.gff simple.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EMN908947 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f EMN908947.fa -g ribosomal-slippage.gff ribosomal-slippage.vcf --force | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000375992/ENST00000375992.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000375992/ENST00000375992.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000375992/incorrect-synon-del-not-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000520795/ENST00000520795.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000520795/ENST00000520795.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000520795/long-inside-del.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000520795/ENST00000520795.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000520795/ENST00000520795.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000520795/long-inside-del.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000519442/ENST00000519442.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000519442/ENST00000519442.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000519442/synon-splice-region-del.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENSMUST00000121418 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25105' --phase m | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENSMUST00000121418 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25496' --phase m | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENSMUST00000121418 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f ENSMUST00000121418.fa -g ENSMUST00000121418.gff filter-problem.vcf -i 'POS!=25500' --phase m | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000285021/ENST00000285021.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000285021/ENST00000285021.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000285021/stop-gained-inframe-indel.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000410009 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -lb -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000410009 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -b -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000410009 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -B 5 -f ENST00000410009.fa -g ENST00000410009.gff frameshift.vcf | ../sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%BCSQ\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000410009/ENST00000410009.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000410009/ENST00000410009.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000410009/frameshift.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s cd /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000000000 && /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -p a -f ENST00000000000.fa -g ENST00000000000.gff upstream-stop.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'[%POS\t%REF\t%ALT\t%SAMPLE\t%GT\t%TBCSQ\n]' | ../sort-csq -q 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000378322/ENST00000378322.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000378322/ENST00000378322.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000378322/end-overlap-tscript.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000378322/ENST00000378322.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000378322/ENST00000378322.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000378322/end-overlap-tscript.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000518414/ENST00000518414.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000518414/ENST00000518414.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000518414/incorrect-inframe-del.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor4.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/frame3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/frame3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 727s .. ok 727s 727s test_csq_real: 727s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor7.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor5.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor8.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor3.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor6.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/frame2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/frame2.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/not-a-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/not-a-start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/splice-acceptor-donor9.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/frame1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/ENST00000341065.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000341065/frame1.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000230048/ENST00000230048.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000230048/ENST00000230048.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000230048/start-del.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0003/EDUMMY0003.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0003/EDUMMY0003.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/EDUMMY0003/long-del.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000329454/ENST00000329454.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000329454/ENST00000329454.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000329454/boundary-deletion.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000329454/ENST00000329454.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000329454/ENST00000329454.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000329454/boundary-deletion.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000390520/ENST00000390520.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000390520/ENST00000390520.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000390520/deletion-overlap.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000263103-INS/ENST00000263103-INS.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000263103-INS/ENST00000263103-INS.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000263103-INS/insertions.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000218032/ENST00000218032.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000218032/ENST00000218032.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000218032/start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000218032/ENST00000218032.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000218032/ENST00000218032.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000218032/start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000218032/ENST00000218032.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000218032/ENST00000218032.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000218032/start-lost-del.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000368801.2/ENST00000368801.2.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000368801.2/ENST00000368801.2.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000368801.2/start-lost.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000571540/ENST00000571540.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000571540/ENST00000571540.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000571540/nmd.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000518414-ENST00000521270/ENST00000518414-ENST00000521270.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000518414-ENST00000521270/valgrind.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000542803/ENST00000542803.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000542803/ENST00000542803.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000542803/splice-region.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_csq_real: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools csq -l -f /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000542803/ENST00000542803.fa -g /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000542803/ENST00000542803.gff /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/ENST00000542803/splice-region.vcf | /tmp/autopkgtest.mS6ftt/build.qze/src/test/csq/sort-csq | /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools query -f'%POS\t%REF\t%ALT\t%EXP\n%POS\t%REF\t%ALT\t%BCSQ\n\n' 728s .. ok 728s 728s test_roh: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools roh /tmp/autopkgtest.mS6ftt/build.qze/src/test/roh.1.vcf.gz -Or -G30 --AF-dflt 0.4| grep -v ^# 728s .. ok 728s 728s test_roh: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools roh /tmp/autopkgtest.mS6ftt/build.qze/src/test/roh.1.vcf.gz -Or -G30 --AF-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/roh.1.tab.gz| grep -v ^# 728s .. ok 728s 728s test_roh: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools roh /tmp/autopkgtest.mS6ftt/build.qze/src/test/roh.1.vcf.gz -Or -G30 --AF-file /tmp/autopkgtest.mS6ftt/build.qze/src/test/roh.1.tab.gz --ignore-homref| grep -v ^# 728s .. ok 728s 728s test_roh: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools roh /tmp/autopkgtest.mS6ftt/build.qze/src/test/roh.1.vcf.gz -G30 --AF-dflt 0.4 -r 1:100174876-100318245| grep -v ^# 728s .. ok 728s 728s test_roh: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools roh /tmp/autopkgtest.mS6ftt/build.qze/src/test/roh.1.vcf.gz -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref| grep -v ^# 728s .. ok 728s 728s test_roh: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools roh /tmp/autopkgtest.mS6ftt/build.qze/src/test/roh.1.vcf.gz -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --ignore-homref --include-noalt| grep -v ^# 728s .. ok 728s 728s test_roh: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools roh /tmp/autopkgtest.mS6ftt/build.qze/src/test/roh.1.vcf.gz -G30 --AF-dflt 0.4 -r 1:100174876-100318245 --include-noalt| grep -v ^# 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -u GT,GT /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -u GT,PL /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -u PL,GT /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -u PL,PL /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -p s1,s1 /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 /tmp/R6lXcFh65m/gtcheck.2.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -p B,A,C,A,C,B,D,A,D,B,D,C,E,A,E,B,E,C,E,D /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -P /tmp/autopkgtest.mS6ftt/build.qze/src/test/gtcheck.3.pairs /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -u PL /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 --n-matches 4 /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO | sort 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -s qry:E,D,C /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -s qry:E,D,C -u PL /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -s qry:B -s gt:D /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -s qry:B -s gt:D -u PL /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -s qry:B -s gt:D,C /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -p B,C,B,D /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -u GT,GT -H /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -u GT,PL -H /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -u PL,GT -H /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -u PL,PL -H /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -P /tmp/autopkgtest.mS6ftt/build.qze/src/test/gtcheck.4.pairs --distinctive-sites 3 /tmp/R6lXcFh65m/gtcheck.4.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -e 0 -P /tmp/autopkgtest.mS6ftt/build.qze/src/test/gtcheck.4.pairs --distinctive-sites 3,1 /tmp/R6lXcFh65m/gtcheck.4.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -u GT -e 30 /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -u GT -e 30 -p s1,s1 /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -u GT -e 300 /tmp/R6lXcFh65m/gtcheck.1.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.1.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -u PL -e 30 /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck /tmp/R6lXcFh65m/gtcheck.ntop.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck --n-matches 2 /tmp/R6lXcFh65m/gtcheck.ntop.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.ntop.gts.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck /tmp/R6lXcFh65m/gtcheck.5.vcf.gz -g /tmp/R6lXcFh65m/gtcheck.5.gts.vcf.gz | grep -v ^# | grep -v Time 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -p A,B,B,C /tmp/R6lXcFh65m/gtcheck.6.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s test_gtcheck: 728s /tmp/autopkgtest.mS6ftt/build.qze/src/bcftools gtcheck -t 11:33 -p A,D,A,E,D,E -u GT -e 10 /tmp/R6lXcFh65m/gtcheck.3.vcf.gz | grep -v ^# | grep -v ^INFO 728s .. ok 728s 728s 728s Number of tests: 728s total .. 1662 728s passed .. 1662 728s failed .. 0 728s 728s mv: cannot stat 'bcftools.orig': No such file or directory 729s autopkgtest [12:05:45]: test command1: -----------------------] 730s autopkgtest [12:05:46]: test command1: - - - - - - - - - - results - - - - - - - - - - 730s command1 PASS 730s autopkgtest [12:05:46]: @@@@@@@@@@@@@@@@@@@@ summary 730s command1 PASS 758s Creating nova instance adt-noble-ppc64el-bcftools-20240327-115336-juju-7f2275-prod-proposed-migration-environment-3-1fbe8d76-a780-48a8-a370-211342df4941 from image adt/ubuntu-noble-ppc64el-server-20240326.img (UUID a856d654-cf86-4db9-9789-e03c818e8ed3)...