0s autopkgtest [15:16:48]: starting date and time: 2024-03-23 15:16:48+0000
  0s autopkgtest [15:16:48]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [15:16:48]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6lvzmkck/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python-pysam,src:curl,src:gnutls28,src:htslib,src:libpsl,src:nettle,src:openssl --apt-upgrade bamkit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python-pysam/0.22.0+ds-1build1 curl/8.5.0-2ubuntu7 gnutls28/3.8.3-1.1ubuntu2 htslib/1.19+ds-1.1build2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-ppc64el-10.secgroup --name adt-noble-ppc64el-bamkit-20240323-151647-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-ppc64el-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
251s autopkgtest [15:20:59]: testbed dpkg architecture: ppc64el
251s autopkgtest [15:20:59]: testbed apt version: 2.7.12
251s autopkgtest [15:20:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup
252s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
252s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3969 kB]
253s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB]
253s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB]
253s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
253s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el Packages [659 kB]
253s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el c-n-f Metadata [3116 B]
253s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el Packages [1372 B]
253s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted ppc64el c-n-f Metadata [116 B]
253s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el Packages [4248 kB]
253s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe ppc64el c-n-f Metadata [8652 B]
253s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el Packages [60.8 kB]
253s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse ppc64el c-n-f Metadata [116 B]
256s Fetched 9623 kB in 2s (3911 kB/s)
257s Reading package lists...
259s Reading package lists...
259s Building dependency tree...
259s Reading state information...
260s Calculating upgrade...
260s The following packages will be REMOVED:
260s   libssl3
260s The following NEW packages will be installed:
260s   libssl3t64
260s The following packages have been kept back:
260s   curl
260s The following packages will be upgraded:
260s   openssl
260s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded.
260s Need to get 3151 kB of archives.
260s After this operation, 73.7 kB of additional disk space will be used.
260s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el openssl ppc64el 3.0.13-0ubuntu2 [1026 kB]
260s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main ppc64el libssl3t64 ppc64el 3.0.13-0ubuntu2 [2125 kB]
261s Fetched 3151 kB in 1s (4572 kB/s)
261s (Reading database ... 
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(Reading database ... 70156 files and directories currently installed.)
261s Preparing to unpack .../openssl_3.0.13-0ubuntu2_ppc64el.deb ...
261s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ...
261s dpkg: libssl3:ppc64el: dependency problems, but removing anyway as you requested:
261s  wget depends on libssl3 (>= 3.0.0).
261s  tnftp depends on libssl3 (>= 3.0.0).
261s  tcpdump depends on libssl3 (>= 3.0.0).
261s  systemd-resolved depends on libssl3 (>= 3.0.0).
261s  systemd depends on libssl3 (>= 3.0.0).
261s  sudo depends on libssl3 (>= 3.0.0).
261s  rsync depends on libssl3 (>= 3.0.0).
261s  python3-cryptography depends on libssl3 (>= 3.0.0).
261s  openssh-server depends on libssl3 (>= 3.0.10).
261s  openssh-client depends on libssl3 (>= 3.0.10).
261s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
261s  libsystemd-shared:ppc64el depends on libssl3 (>= 3.0.0).
261s  libssh-4:ppc64el depends on libssl3 (>= 3.0.0).
261s  libsasl2-modules:ppc64el depends on libssl3 (>= 3.0.0).
261s  libsasl2-2:ppc64el depends on libssl3 (>= 3.0.0).
261s  libpython3.12-minimal:ppc64el depends on libssl3 (>= 3.0.0).
261s  libpython3.11-minimal:ppc64el depends on libssl3 (>= 3.0.0).
261s  libnvme1 depends on libssl3 (>= 3.0.0).
261s  libkrb5-3:ppc64el depends on libssl3 (>= 3.0.0).
261s  libkmod2:ppc64el depends on libssl3 (>= 3.0.0).
261s  libfido2-1:ppc64el depends on libssl3 (>= 3.0.0).
261s  libcurl4:ppc64el depends on libssl3 (>= 3.0.0).
261s  libcryptsetup12:ppc64el depends on libssl3 (>= 3.0.0).
261s  kmod depends on libssl3 (>= 3.0.0).
261s  dhcpcd-base depends on libssl3 (>= 3.0.0).
261s  bind9-libs:ppc64el depends on libssl3 (>= 3.0.0).
261s 
261s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70156 files and directories currently installed.)
261s Removing libssl3:ppc64el (3.0.10-1ubuntu4) ...
261s Selecting previously unselected package libssl3t64:ppc64el.
261s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 70145 files and directories currently installed.)
261s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_ppc64el.deb ...
261s Unpacking libssl3t64:ppc64el (3.0.13-0ubuntu2) ...
261s Setting up libssl3t64:ppc64el (3.0.13-0ubuntu2) ...
261s Setting up openssl (3.0.13-0ubuntu2) ...
261s Processing triggers for man-db (2.12.0-3) ...
262s Processing triggers for libc-bin (2.39-0ubuntu6) ...
262s Reading package lists...
262s Building dependency tree...
262s Reading state information...
262s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
263s sh: Attempting to set up Debian/Ubuntu apt sources automatically
263s sh: Distribution appears to be Ubuntu
264s Reading package lists...
264s Building dependency tree...
264s Reading state information...
264s eatmydata is already the newest version (131-1).
264s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
264s Reading package lists...
264s Building dependency tree...
264s Reading state information...
265s dbus is already the newest version (1.14.10-4ubuntu1).
265s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
265s Reading package lists...
265s Building dependency tree...
265s Reading state information...
265s rng-tools-debian is already the newest version (2.4).
265s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
265s Reading package lists...
265s Building dependency tree...
265s Reading state information...
265s The following packages will be REMOVED:
265s   cloud-init* python3-configobj* python3-debconf*
266s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
266s After this operation, 3256 kB disk space will be freed.
266s (Reading database ... 
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(Reading database ... 70158 files and directories currently installed.)
266s Removing cloud-init (24.1.2-0ubuntu1) ...
266s Removing python3-configobj (5.0.8-3) ...
266s Removing python3-debconf (1.5.86) ...
266s Processing triggers for man-db (2.12.0-3) ...
267s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 69769 files and directories currently installed.)
267s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
267s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
267s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
267s invoke-rc.d: policy-rc.d denied execution of try-restart.
267s Reading package lists...
268s Building dependency tree...
268s Reading state information...
268s linux-generic is already the newest version (6.8.0-11.11+1).
268s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
268s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
268s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
268s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
271s Reading package lists...
271s Reading package lists...
271s Building dependency tree...
271s Reading state information...
271s Calculating upgrade...
271s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
271s Reading package lists...
272s Building dependency tree...
272s Reading state information...
272s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
272s autopkgtest [15:21:20]: rebooting testbed after setup commands that affected boot
440s autopkgtest [15:24:08]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP Wed Feb 14 00:33:03 UTC 2024
442s autopkgtest [15:24:10]: @@@@@@@@@@@@@@@@@@@@ apt-source bamkit
444s Get:1 http://ftpmaster.internal/ubuntu noble/universe bamkit 0.0.1+git20170413.ccd079d-3 (dsc) [2124 B]
444s Get:2 http://ftpmaster.internal/ubuntu noble/universe bamkit 0.0.1+git20170413.ccd079d-3 (tar) [7772 B]
444s Get:3 http://ftpmaster.internal/ubuntu noble/universe bamkit 0.0.1+git20170413.ccd079d-3 (diff) [6420 B]
444s gpgv: Signature made Mon Aug 16 11:31:23 2021 UTC
444s gpgv:                using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
444s gpgv:                issuer "npatra974@gmail.com"
444s gpgv: Can't check signature: No public key
444s dpkg-source: warning: cannot verify inline signature for ./bamkit_0.0.1+git20170413.ccd079d-3.dsc: no acceptable signature found
444s autopkgtest [15:24:12]: testing package bamkit version 0.0.1+git20170413.ccd079d-3
444s autopkgtest [15:24:12]: build not needed
445s autopkgtest [15:24:13]: test run-unit-test: preparing testbed
446s Reading package lists...
446s Building dependency tree...
446s Reading state information...
446s Starting pkgProblemResolver with broken count: 0
446s Starting 2 pkgProblemResolver with broken count: 0
446s Done
447s The following additional packages will be installed:
447s   bamkit libdeflate0 libhts3 libhtscodecs2 python3-pysam samtools
447s Suggested packages:
447s   cwltool
447s The following NEW packages will be installed:
447s   autopkgtest-satdep bamkit libdeflate0 libhts3 libhtscodecs2 python3-pysam
447s   samtools
447s 0 upgraded, 7 newly installed, 0 to remove and 0 not upgraded.
447s Need to get 6445 kB/6445 kB of archives.
447s After this operation, 49.4 MB of additional disk space will be used.
447s Get:1 /tmp/autopkgtest.7Bd8za/1-autopkgtest-satdep.deb autopkgtest-satdep ppc64el 0 [716 B]
447s Get:2 http://ftpmaster.internal/ubuntu noble/main ppc64el libdeflate0 ppc64el 1.19-1 [61.9 kB]
447s Get:3 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhtscodecs2 ppc64el 1.6.0-1 [110 kB]
447s Get:4 http://ftpmaster.internal/ubuntu noble/universe ppc64el libhts3 ppc64el 1.18+ds-1 [553 kB]
447s Get:5 http://ftpmaster.internal/ubuntu noble/universe ppc64el python3-pysam ppc64el 0.22.0+ds-1 [5037 kB]
447s Get:6 http://ftpmaster.internal/ubuntu noble/universe ppc64el bamkit all 0.0.1+git20170413.ccd079d-3 [14.9 kB]
447s Get:7 http://ftpmaster.internal/ubuntu noble/universe ppc64el samtools ppc64el 1.19.2-1 [669 kB]
448s Fetched 6445 kB in 1s (8466 kB/s)
448s Selecting previously unselected package libdeflate0:ppc64el.
448s (Reading database ... 
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(Reading database ... 69714 files and directories currently installed.)
448s Preparing to unpack .../0-libdeflate0_1.19-1_ppc64el.deb ...
448s Unpacking libdeflate0:ppc64el (1.19-1) ...
448s Selecting previously unselected package libhtscodecs2:ppc64el.
448s Preparing to unpack .../1-libhtscodecs2_1.6.0-1_ppc64el.deb ...
448s Unpacking libhtscodecs2:ppc64el (1.6.0-1) ...
448s Selecting previously unselected package libhts3:ppc64el.
448s Preparing to unpack .../2-libhts3_1.18+ds-1_ppc64el.deb ...
448s Unpacking libhts3:ppc64el (1.18+ds-1) ...
448s Selecting previously unselected package python3-pysam.
448s Preparing to unpack .../3-python3-pysam_0.22.0+ds-1_ppc64el.deb ...
448s Unpacking python3-pysam (0.22.0+ds-1) ...
448s Selecting previously unselected package bamkit.
448s Preparing to unpack .../4-bamkit_0.0.1+git20170413.ccd079d-3_all.deb ...
448s Unpacking bamkit (0.0.1+git20170413.ccd079d-3) ...
448s Selecting previously unselected package samtools.
448s Preparing to unpack .../5-samtools_1.19.2-1_ppc64el.deb ...
448s Unpacking samtools (1.19.2-1) ...
448s Selecting previously unselected package autopkgtest-satdep.
448s Preparing to unpack .../6-1-autopkgtest-satdep.deb ...
448s Unpacking autopkgtest-satdep (0) ...
448s Setting up libhtscodecs2:ppc64el (1.6.0-1) ...
448s Setting up libdeflate0:ppc64el (1.19-1) ...
448s Setting up libhts3:ppc64el (1.18+ds-1) ...
448s Setting up python3-pysam (0.22.0+ds-1) ...
448s Setting up bamkit (0.0.1+git20170413.ccd079d-3) ...
449s Setting up samtools (1.19.2-1) ...
449s Setting up autopkgtest-satdep (0) ...
449s Processing triggers for man-db (2.12.0-3) ...
449s Processing triggers for libc-bin (2.39-0ubuntu6) ...
451s (Reading database ... 70232 files and directories currently installed.)
451s Removing autopkgtest-satdep (0) ...
452s autopkgtest [15:24:20]: test run-unit-test: [-----------------------
452s PASS Tests
453s autopkgtest [15:24:21]: test run-unit-test: -----------------------]
453s autopkgtest [15:24:21]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
453s run-unit-test        PASS
454s autopkgtest [15:24:22]: @@@@@@@@@@@@@@@@@@@@ summary
454s run-unit-test        PASS
472s Creating nova instance adt-noble-ppc64el-bamkit-20240323-151647-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-ppc64el-server-20240323.img (UUID ff8abf95-5243-4ea5-b7f5-3bf690534a1d)...