0s autopkgtest [01:50:08]: starting date and time: 2024-03-22 01:50:08+0000
  0s autopkgtest [01:50:08]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [01:50:08]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.bv5l9vmi/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:ncbi-blast+ --apt-upgrade resfinder --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=ncbi-blast+/2.12.0+ds-4build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-52.secgroup --name adt-noble-i386-resfinder-20240322-015008-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
368s autopkgtest [01:56:16]: testbed dpkg architecture: amd64
368s autopkgtest [01:56:16]: testbed apt version: 2.7.12
368s autopkgtest [01:56:16]: test architecture: i386
368s autopkgtest [01:56:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup
368s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
368s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
368s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB]
368s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3801 kB]
368s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [53.9 kB]
368s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [467 kB]
368s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [703 kB]
368s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
368s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB]
368s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
368s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
368s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4251 kB]
369s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1280 kB]
369s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
369s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [93.7 kB]
369s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [26.8 kB]
369s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
372s Fetched 11.3 MB in 1s (7835 kB/s)
372s Reading package lists...
374s Reading package lists...
374s Building dependency tree...
374s Reading state information...
375s Calculating upgrade...
375s The following packages will be upgraded:
375s   cloud-init fonts-ubuntu-console python3-markupsafe
375s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
375s Need to get 629 kB of archives.
375s After this operation, 11.3 kB disk space will be freed.
375s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-ubuntu-console all 0.869+git20240321-0ubuntu1 [18.7 kB]
375s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3-markupsafe amd64 2.1.5-1build1 [12.6 kB]
375s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 cloud-init all 24.1.2-0ubuntu1 [597 kB]
375s Preconfiguring packages ...
375s Fetched 629 kB in 0s (13.8 MB/s)
375s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71865 files and directories currently installed.)
375s Preparing to unpack .../fonts-ubuntu-console_0.869+git20240321-0ubuntu1_all.deb ...
375s Unpacking fonts-ubuntu-console (0.869+git20240321-0ubuntu1) over (0.869-0ubuntu1) ...
375s Preparing to unpack .../python3-markupsafe_2.1.5-1build1_amd64.deb ...
376s Unpacking python3-markupsafe (2.1.5-1build1) over (2.1.5-1) ...
376s Preparing to unpack .../cloud-init_24.1.2-0ubuntu1_all.deb ...
376s Unpacking cloud-init (24.1.2-0ubuntu1) over (24.1.1-0ubuntu1) ...
376s Setting up fonts-ubuntu-console (0.869+git20240321-0ubuntu1) ...
376s Setting up cloud-init (24.1.2-0ubuntu1) ...
377s Setting up python3-markupsafe (2.1.5-1build1) ...
378s Processing triggers for man-db (2.12.0-3) ...
378s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
378s Reading package lists...
379s Building dependency tree...
379s Reading state information...
379s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
380s sh: Attempting to set up Debian/Ubuntu apt sources automatically
380s sh: Distribution appears to be Ubuntu
380s Reading package lists...
381s Building dependency tree...
381s Reading state information...
381s eatmydata is already the newest version (131-1).
381s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
381s Reading package lists...
381s Building dependency tree...
381s Reading state information...
382s dbus is already the newest version (1.14.10-4ubuntu1).
382s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
382s Reading package lists...
382s Building dependency tree...
382s Reading state information...
382s rng-tools-debian is already the newest version (2.4).
382s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
382s Reading package lists...
383s Building dependency tree...
383s Reading state information...
383s The following packages will be REMOVED:
383s   cloud-init* python3-configobj* python3-debconf*
383s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
383s After this operation, 3256 kB disk space will be freed.
383s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
383s Removing cloud-init (24.1.2-0ubuntu1) ...
384s Removing python3-configobj (5.0.8-3) ...
384s Removing python3-debconf (1.5.86) ...
384s Processing triggers for man-db (2.12.0-3) ...
384s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
384s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
385s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
385s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
385s invoke-rc.d: policy-rc.d denied execution of try-restart.
385s Reading package lists...
386s Building dependency tree...
386s Reading state information...
386s linux-generic is already the newest version (6.8.0-11.11+1).
386s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
386s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
386s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
386s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
388s Reading package lists...
388s Reading package lists...
389s Building dependency tree...
389s Reading state information...
389s Calculating upgrade...
389s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
389s Reading package lists...
389s Building dependency tree...
389s Reading state information...
390s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
390s autopkgtest [01:56:38]: rebooting testbed after setup commands that affected boot
411s autopkgtest [01:56:59]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
412s autopkgtest [01:57:00]: @@@@@@@@@@@@@@@@@@@@ apt-source resfinder
413s Get:1 http://ftpmaster.internal/ubuntu noble/universe resfinder 4.4.2-1 (dsc) [2539 B]
413s Get:2 http://ftpmaster.internal/ubuntu noble/universe resfinder 4.4.2-1 (tar) [89.1 kB]
413s Get:3 http://ftpmaster.internal/ubuntu noble/universe resfinder 4.4.2-1 (tar) [359 kB]
413s Get:4 http://ftpmaster.internal/ubuntu noble/universe resfinder 4.4.2-1 (diff) [8332 B]
413s gpgv: Signature made Tue Jan 16 07:05:55 2024 UTC
413s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
413s gpgv:                issuer "tille@debian.org"
413s gpgv: Can't check signature: No public key
413s dpkg-source: warning: cannot verify inline signature for ./resfinder_4.4.2-1.dsc: no acceptable signature found
413s autopkgtest [01:57:01]: testing package resfinder version 4.4.2-1
415s autopkgtest [01:57:03]: build not needed
415s run-unit-test        SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
415s autopkgtest [01:57:03]: test version-test: preparing testbed
419s Note, using file '/tmp/autopkgtest.XDveR2/1-autopkgtest-satdep.dsc' to get the build dependencies
419s Reading package lists...
419s Building dependency tree...
419s Reading state information...
419s Starting pkgProblemResolver with broken count: 0
419s Starting 2 pkgProblemResolver with broken count: 0
419s Done
420s The following NEW packages will be installed:
420s   build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu
420s   fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono
420s   fonts-urw-base35 g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc
420s   gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu git git-man kma libasan8
420s   libatomic1 libblas3 libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
420s   libdeflate0 liberror-perl libfontconfig1 libfontenc1 libgcc-13-dev
420s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libimagequant0
420s   libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2
420s   liblerc4 liblsan0 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpc3
420s   libnsl-dev libopenjp2-7 libpixman-1-0 libquadmath0 libraqm0 libsharpyuv0
420s   libstdc++-13-dev libtiff6 libtirpc-dev libtsan2 libubsan1 libwebp7
420s   libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1
420s   linux-libc-dev ncbi-blast+ ncbi-blast+-legacy ncbi-data python3-biopython
420s   python3-cairo python3-cgecore python3-cgelib python3-dateutil
420s   python3-freetype python3-git python3-gitdb python3-numpy python3-pandas
420s   python3-pandas-lib python3-pil python3-reportlab python3-rlpycairo
420s   python3-smmap python3-tabulate resfinder resfinder-db resfinder-example
420s   rpcsvc-proto sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils
420s   xml-core
420s 0 upgraded, 100 newly installed, 0 to remove and 0 not upgraded.
420s Need to get 145 MB of archives.
420s After this operation, 623 MB of additional disk space will be used.
420s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 sgml-base all 1.31 [11.4 kB]
420s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu2 [20.4 kB]
420s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB]
420s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB]
420s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1build1 [222 kB]
420s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB]
420s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB]
420s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu2 [2126 kB]
420s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB]
420s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB]
420s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB]
420s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B]
420s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B]
420s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB]
420s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB]
420s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
420s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB]
420s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
420s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB]
420s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB]
420s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB]
420s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB]
420s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB]
420s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB]
420s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB]
420s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB]
420s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB]
420s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B]
420s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B]
420s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB]
420s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB]
420s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB]
420s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B]
420s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B]
420s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B]
420s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
420s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
421s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libfontenc1 amd64 1:1.1.8-1 [14.0 kB]
421s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
421s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
421s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 xfonts-utils amd64 1:7.7+6build2 [94.6 kB]
421s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB]
421s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB]
421s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-extra all 2.37-8 [1947 kB]
421s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 liberror-perl all 0.17029-2 [25.6 kB]
421s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 git-man all 1:2.43.0-1ubuntu1 [1100 kB]
421s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 git amd64 1:2.43.0-1ubuntu1 [3677 kB]
421s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 kma amd64 1.4.14-2 [223 kB]
421s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
421s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB]
421s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB]
421s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB]
421s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B]
421s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB]
421s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB]
421s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB]
421s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
421s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB]
421s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB]
421s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libimagequant0 amd64 2.18.0-1 [36.3 kB]
421s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB]
421s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
421s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
421s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB]
421s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB]
421s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 libmbedcrypto7 amd64 2.28.7-1ubuntu1 [206 kB]
421s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libmbedx509-1 amd64 2.28.7-1ubuntu1 [46.4 kB]
421s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 libmbedtls14 amd64 2.28.7-1ubuntu1 [82.1 kB]
421s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libraqm0 amd64 0.10.1-1 [14.6 kB]
421s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB]
421s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB]
421s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB]
421s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB]
421s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libwebpdemux2 amd64 1.3.2-0.4 [12.4 kB]
421s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libwebpmux3 amd64 1.3.2-0.4 [25.6 kB]
421s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 ncbi-data all 6.1.20170106+dfsg1-10 [4395 kB]
421s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 ncbi-blast+ amd64 2.12.0+ds-4 [12.6 MB]
421s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 ncbi-blast+-legacy all 2.12.0+ds-4 [4984 B]
421s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 python3-numpy amd64 1:1.24.2-2 [7141 kB]
421s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB]
421s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 python3-pil amd64 10.2.0-1 [487 kB]
421s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 python3-cairo amd64 1.25.1-2 [148 kB]
421s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-freetype all 2.4.0-1 [83.1 kB]
421s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B]
421s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-reportlab all 4.1.0-1 [683 kB]
421s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 xml-core all 0.19 [20.3 kB]
421s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB]
421s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-biopython amd64 1.81+dfsg-3 [1670 kB]
421s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-cgecore all 1.5.6+ds-1 [28.8 kB]
421s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 python3-dateutil all 2.8.2-3 [79.2 kB]
421s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-smmap all 6.0.0-1 [20.5 kB]
421s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-gitdb all 4.0.11-1 [46.2 kB]
421s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-git all 3.1.37-3 [138 kB]
421s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-4ubuntu2 [8348 kB]
421s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB]
421s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-cgelib all 0.7.3-3 [48.2 kB]
421s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 python3-tabulate all 0.8.10-1 [38.2 kB]
421s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 resfinder-db all 0.0+git20220524.fa32d9a-1 [11.3 MB]
421s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 resfinder all 4.4.2-1 [66.5 kB]
421s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 resfinder-example all 4.4.2-1 [572 kB]
422s Fetched 145 MB in 1s (126 MB/s)
422s Selecting previously unselected package sgml-base.
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422s Preparing to unpack .../00-sgml-base_1.31_all.deb ...
422s Unpacking sgml-base (1.31) ...
422s Selecting previously unselected package libc-dev-bin.
422s Preparing to unpack .../01-libc-dev-bin_2.39-0ubuntu2_amd64.deb ...
422s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
422s Selecting previously unselected package linux-libc-dev:amd64.
422s Preparing to unpack .../02-linux-libc-dev_6.8.0-11.11_amd64.deb ...
422s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ...
422s Selecting previously unselected package libcrypt-dev:amd64.
422s Preparing to unpack .../03-libcrypt-dev_1%3a4.4.36-4_amd64.deb ...
422s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ...
422s Selecting previously unselected package libtirpc-dev:amd64.
422s Preparing to unpack .../04-libtirpc-dev_1.3.4+ds-1build1_amd64.deb ...
422s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
422s Selecting previously unselected package libnsl-dev:amd64.
422s Preparing to unpack .../05-libnsl-dev_1.3.0-3_amd64.deb ...
422s Unpacking libnsl-dev:amd64 (1.3.0-3) ...
422s Selecting previously unselected package rpcsvc-proto.
422s Preparing to unpack .../06-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ...
422s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
422s Selecting previously unselected package libc6-dev:amd64.
422s Preparing to unpack .../07-libc6-dev_2.39-0ubuntu2_amd64.deb ...
422s Unpacking libc6-dev:amd64 (2.39-0ubuntu2) ...
422s Selecting previously unselected package libisl23:amd64.
422s Preparing to unpack .../08-libisl23_0.26-3_amd64.deb ...
422s Unpacking libisl23:amd64 (0.26-3) ...
423s Selecting previously unselected package libmpc3:amd64.
423s Preparing to unpack .../09-libmpc3_1.3.1-1_amd64.deb ...
423s Unpacking libmpc3:amd64 (1.3.1-1) ...
423s Selecting previously unselected package cpp-13-x86-64-linux-gnu.
423s Preparing to unpack .../10-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
423s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
423s Selecting previously unselected package cpp-13.
423s Preparing to unpack .../11-cpp-13_13.2.0-17ubuntu2_amd64.deb ...
423s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
423s Selecting previously unselected package cpp-x86-64-linux-gnu.
423s Preparing to unpack .../12-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
423s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
423s Selecting previously unselected package cpp.
423s Preparing to unpack .../13-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ...
423s Unpacking cpp (4:13.2.0-7ubuntu1) ...
423s Selecting previously unselected package libcc1-0:amd64.
423s Preparing to unpack .../14-libcc1-0_14-20240303-1ubuntu1_amd64.deb ...
423s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ...
423s Selecting previously unselected package libgomp1:amd64.
423s Preparing to unpack .../15-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
423s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
423s Selecting previously unselected package libitm1:amd64.
423s Preparing to unpack .../16-libitm1_14-20240303-1ubuntu1_amd64.deb ...
423s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ...
423s Selecting previously unselected package libatomic1:amd64.
423s Preparing to unpack .../17-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
423s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
423s Selecting previously unselected package libasan8:amd64.
423s Preparing to unpack .../18-libasan8_14-20240303-1ubuntu1_amd64.deb ...
423s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ...
423s Selecting previously unselected package liblsan0:amd64.
423s Preparing to unpack .../19-liblsan0_14-20240303-1ubuntu1_amd64.deb ...
423s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ...
423s Selecting previously unselected package libtsan2:amd64.
423s Preparing to unpack .../20-libtsan2_14-20240303-1ubuntu1_amd64.deb ...
423s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ...
423s Selecting previously unselected package libubsan1:amd64.
423s Preparing to unpack .../21-libubsan1_14-20240303-1ubuntu1_amd64.deb ...
423s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ...
423s Selecting previously unselected package libhwasan0:amd64.
423s Preparing to unpack .../22-libhwasan0_14-20240303-1ubuntu1_amd64.deb ...
423s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ...
423s Selecting previously unselected package libquadmath0:amd64.
423s Preparing to unpack .../23-libquadmath0_14-20240303-1ubuntu1_amd64.deb ...
423s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ...
423s Selecting previously unselected package libgcc-13-dev:amd64.
423s Preparing to unpack .../24-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ...
423s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
423s Selecting previously unselected package gcc-13-x86-64-linux-gnu.
423s Preparing to unpack .../25-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
423s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
424s Selecting previously unselected package gcc-13.
424s Preparing to unpack .../26-gcc-13_13.2.0-17ubuntu2_amd64.deb ...
424s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
424s Selecting previously unselected package gcc-x86-64-linux-gnu.
424s Preparing to unpack .../27-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
424s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
424s Selecting previously unselected package gcc.
424s Preparing to unpack .../28-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ...
424s Unpacking gcc (4:13.2.0-7ubuntu1) ...
424s Selecting previously unselected package libstdc++-13-dev:amd64.
424s Preparing to unpack .../29-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ...
424s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
424s Selecting previously unselected package g++-13-x86-64-linux-gnu.
424s Preparing to unpack .../30-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ...
424s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
424s Selecting previously unselected package g++-13.
425s Preparing to unpack .../31-g++-13_13.2.0-17ubuntu2_amd64.deb ...
425s Unpacking g++-13 (13.2.0-17ubuntu2) ...
425s Selecting previously unselected package g++-x86-64-linux-gnu.
425s Preparing to unpack .../32-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ...
425s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
425s Selecting previously unselected package g++.
425s Preparing to unpack .../33-g++_4%3a13.2.0-7ubuntu1_amd64.deb ...
425s Unpacking g++ (4:13.2.0-7ubuntu1) ...
425s Selecting previously unselected package build-essential.
425s Preparing to unpack .../34-build-essential_12.10ubuntu1_amd64.deb ...
425s Unpacking build-essential (12.10ubuntu1) ...
425s Selecting previously unselected package fonts-dejavu-mono.
425s Preparing to unpack .../35-fonts-dejavu-mono_2.37-8_all.deb ...
425s Unpacking fonts-dejavu-mono (2.37-8) ...
425s Selecting previously unselected package fonts-dejavu-core.
425s Preparing to unpack .../36-fonts-dejavu-core_2.37-8_all.deb ...
425s Unpacking fonts-dejavu-core (2.37-8) ...
425s Selecting previously unselected package libfontenc1:amd64.
425s Preparing to unpack .../37-libfontenc1_1%3a1.1.8-1_amd64.deb ...
425s Unpacking libfontenc1:amd64 (1:1.1.8-1) ...
425s Selecting previously unselected package x11-common.
425s Preparing to unpack .../38-x11-common_1%3a7.7+23ubuntu2_all.deb ...
425s Unpacking x11-common (1:7.7+23ubuntu2) ...
425s Selecting previously unselected package xfonts-encodings.
425s Preparing to unpack .../39-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
425s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
425s Selecting previously unselected package xfonts-utils.
425s Preparing to unpack .../40-xfonts-utils_1%3a7.7+6build2_amd64.deb ...
425s Unpacking xfonts-utils (1:7.7+6build2) ...
425s Selecting previously unselected package fonts-urw-base35.
425s Preparing to unpack .../41-fonts-urw-base35_20200910-8_all.deb ...
425s Unpacking fonts-urw-base35 (20200910-8) ...
425s Selecting previously unselected package fontconfig-config.
425s Preparing to unpack .../42-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ...
425s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
425s Selecting previously unselected package fonts-dejavu-extra.
425s Preparing to unpack .../43-fonts-dejavu-extra_2.37-8_all.deb ...
425s Unpacking fonts-dejavu-extra (2.37-8) ...
425s Selecting previously unselected package liberror-perl.
425s Preparing to unpack .../44-liberror-perl_0.17029-2_all.deb ...
425s Unpacking liberror-perl (0.17029-2) ...
425s Selecting previously unselected package git-man.
425s Preparing to unpack .../45-git-man_1%3a2.43.0-1ubuntu1_all.deb ...
425s Unpacking git-man (1:2.43.0-1ubuntu1) ...
425s Selecting previously unselected package git.
425s Preparing to unpack .../46-git_1%3a2.43.0-1ubuntu1_amd64.deb ...
425s Unpacking git (1:2.43.0-1ubuntu1) ...
426s Selecting previously unselected package kma.
426s Preparing to unpack .../47-kma_1.4.14-2_amd64.deb ...
426s Unpacking kma (1.4.14-2) ...
426s Selecting previously unselected package libblas3:amd64.
426s Preparing to unpack .../48-libblas3_3.12.0-3_amd64.deb ...
426s Unpacking libblas3:amd64 (3.12.0-3) ...
426s Selecting previously unselected package libfontconfig1:amd64.
426s Preparing to unpack .../49-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ...
426s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
426s Selecting previously unselected package libpixman-1-0:amd64.
426s Preparing to unpack .../50-libpixman-1-0_0.42.2-1_amd64.deb ...
426s Unpacking libpixman-1-0:amd64 (0.42.2-1) ...
426s Selecting previously unselected package libxcb-render0:amd64.
426s Preparing to unpack .../51-libxcb-render0_1.15-1_amd64.deb ...
426s Unpacking libxcb-render0:amd64 (1.15-1) ...
426s Selecting previously unselected package libxcb-shm0:amd64.
426s Preparing to unpack .../52-libxcb-shm0_1.15-1_amd64.deb ...
426s Unpacking libxcb-shm0:amd64 (1.15-1) ...
426s Selecting previously unselected package libxrender1:amd64.
426s Preparing to unpack .../53-libxrender1_1%3a0.9.10-1.1_amd64.deb ...
426s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ...
426s Selecting previously unselected package libcairo2:amd64.
426s Preparing to unpack .../54-libcairo2_1.18.0-1_amd64.deb ...
426s Unpacking libcairo2:amd64 (1.18.0-1) ...
426s Selecting previously unselected package libdeflate0:amd64.
426s Preparing to unpack .../55-libdeflate0_1.19-1_amd64.deb ...
426s Unpacking libdeflate0:amd64 (1.19-1) ...
426s Selecting previously unselected package libgfortran5:amd64.
426s Preparing to unpack .../56-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
426s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
426s Selecting previously unselected package libgraphite2-3:amd64.
426s Preparing to unpack .../57-libgraphite2-3_1.3.14-2_amd64.deb ...
426s Unpacking libgraphite2-3:amd64 (1.3.14-2) ...
426s Selecting previously unselected package libharfbuzz0b:amd64.
426s Preparing to unpack .../58-libharfbuzz0b_8.3.0-2_amd64.deb ...
426s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ...
426s Selecting previously unselected package libimagequant0:amd64.
426s Preparing to unpack .../59-libimagequant0_2.18.0-1_amd64.deb ...
426s Unpacking libimagequant0:amd64 (2.18.0-1) ...
426s Selecting previously unselected package libjpeg-turbo8:amd64.
426s Preparing to unpack .../60-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ...
426s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
426s Selecting previously unselected package libjpeg8:amd64.
426s Preparing to unpack .../61-libjpeg8_8c-2ubuntu11_amd64.deb ...
426s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
426s Selecting previously unselected package liblapack3:amd64.
426s Preparing to unpack .../62-liblapack3_3.12.0-3_amd64.deb ...
426s Unpacking liblapack3:amd64 (3.12.0-3) ...
426s Selecting previously unselected package liblcms2-2:amd64.
426s Preparing to unpack .../63-liblcms2-2_2.14-2_amd64.deb ...
426s Unpacking liblcms2-2:amd64 (2.14-2) ...
426s Selecting previously unselected package liblerc4:amd64.
426s Preparing to unpack .../64-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ...
426s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
426s Selecting previously unselected package libmbedcrypto7:amd64.
426s Preparing to unpack .../65-libmbedcrypto7_2.28.7-1ubuntu1_amd64.deb ...
426s Unpacking libmbedcrypto7:amd64 (2.28.7-1ubuntu1) ...
426s Selecting previously unselected package libmbedx509-1:amd64.
426s Preparing to unpack .../66-libmbedx509-1_2.28.7-1ubuntu1_amd64.deb ...
426s Unpacking libmbedx509-1:amd64 (2.28.7-1ubuntu1) ...
427s Selecting previously unselected package libmbedtls14:amd64.
427s Preparing to unpack .../67-libmbedtls14_2.28.7-1ubuntu1_amd64.deb ...
427s Unpacking libmbedtls14:amd64 (2.28.7-1ubuntu1) ...
427s Selecting previously unselected package libraqm0:amd64.
427s Preparing to unpack .../68-libraqm0_0.10.1-1_amd64.deb ...
427s Unpacking libraqm0:amd64 (0.10.1-1) ...
427s Selecting previously unselected package libsharpyuv0:amd64.
427s Preparing to unpack .../69-libsharpyuv0_1.3.2-0.4_amd64.deb ...
427s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ...
427s Selecting previously unselected package libjbig0:amd64.
427s Preparing to unpack .../70-libjbig0_2.1-6.1ubuntu1_amd64.deb ...
427s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ...
427s Selecting previously unselected package libwebp7:amd64.
427s Preparing to unpack .../71-libwebp7_1.3.2-0.4_amd64.deb ...
427s Unpacking libwebp7:amd64 (1.3.2-0.4) ...
427s Selecting previously unselected package libtiff6:amd64.
427s Preparing to unpack .../72-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ...
427s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
427s Selecting previously unselected package libwebpdemux2:amd64.
427s Preparing to unpack .../73-libwebpdemux2_1.3.2-0.4_amd64.deb ...
427s Unpacking libwebpdemux2:amd64 (1.3.2-0.4) ...
427s Selecting previously unselected package libwebpmux3:amd64.
427s Preparing to unpack .../74-libwebpmux3_1.3.2-0.4_amd64.deb ...
427s Unpacking libwebpmux3:amd64 (1.3.2-0.4) ...
427s Selecting previously unselected package ncbi-data.
427s Preparing to unpack .../75-ncbi-data_6.1.20170106+dfsg1-10_all.deb ...
427s Unpacking ncbi-data (6.1.20170106+dfsg1-10) ...
427s Selecting previously unselected package ncbi-blast+.
427s Preparing to unpack .../76-ncbi-blast+_2.12.0+ds-4_amd64.deb ...
427s Unpacking ncbi-blast+ (2.12.0+ds-4) ...
427s Selecting previously unselected package ncbi-blast+-legacy.
427s Preparing to unpack .../77-ncbi-blast+-legacy_2.12.0+ds-4_all.deb ...
427s Unpacking ncbi-blast+-legacy (2.12.0+ds-4) ...
427s Selecting previously unselected package python3-numpy.
427s Preparing to unpack .../78-python3-numpy_1%3a1.24.2-2_amd64.deb ...
427s Unpacking python3-numpy (1:1.24.2-2) ...
428s Selecting previously unselected package libopenjp2-7:amd64.
428s Preparing to unpack .../79-libopenjp2-7_2.5.0-2_amd64.deb ...
428s Unpacking libopenjp2-7:amd64 (2.5.0-2) ...
428s Selecting previously unselected package python3-pil:amd64.
428s Preparing to unpack .../80-python3-pil_10.2.0-1_amd64.deb ...
428s Unpacking python3-pil:amd64 (10.2.0-1) ...
428s Selecting previously unselected package python3-cairo.
428s Preparing to unpack .../81-python3-cairo_1.25.1-2_amd64.deb ...
428s Unpacking python3-cairo (1.25.1-2) ...
428s Selecting previously unselected package python3-freetype.
428s Preparing to unpack .../82-python3-freetype_2.4.0-1_all.deb ...
428s Unpacking python3-freetype (2.4.0-1) ...
428s Selecting previously unselected package python3-rlpycairo.
428s Preparing to unpack .../83-python3-rlpycairo_0.3.0-3_all.deb ...
428s Unpacking python3-rlpycairo (0.3.0-3) ...
428s Selecting previously unselected package python3-reportlab.
428s Preparing to unpack .../84-python3-reportlab_4.1.0-1_all.deb ...
428s Unpacking python3-reportlab (4.1.0-1) ...
428s Selecting previously unselected package xml-core.
428s Preparing to unpack .../85-xml-core_0.19_all.deb ...
428s Unpacking xml-core (0.19) ...
428s Selecting previously unselected package w3c-sgml-lib.
428s Preparing to unpack .../86-w3c-sgml-lib_1.3-3_all.deb ...
428s Unpacking w3c-sgml-lib (1.3-3) ...
428s Selecting previously unselected package python3-biopython.
428s Preparing to unpack .../87-python3-biopython_1.81+dfsg-3_amd64.deb ...
428s Unpacking python3-biopython (1.81+dfsg-3) ...
428s Selecting previously unselected package python3-cgecore.
428s Preparing to unpack .../88-python3-cgecore_1.5.6+ds-1_all.deb ...
428s Unpacking python3-cgecore (1.5.6+ds-1) ...
428s Selecting previously unselected package python3-dateutil.
428s Preparing to unpack .../89-python3-dateutil_2.8.2-3_all.deb ...
428s Unpacking python3-dateutil (2.8.2-3) ...
428s Selecting previously unselected package python3-smmap.
428s Preparing to unpack .../90-python3-smmap_6.0.0-1_all.deb ...
428s Unpacking python3-smmap (6.0.0-1) ...
428s Selecting previously unselected package python3-gitdb.
428s Preparing to unpack .../91-python3-gitdb_4.0.11-1_all.deb ...
428s Unpacking python3-gitdb (4.0.11-1) ...
428s Selecting previously unselected package python3-git.
428s Preparing to unpack .../92-python3-git_3.1.37-3_all.deb ...
428s Unpacking python3-git (3.1.37-3) ...
428s Selecting previously unselected package python3-pandas-lib:amd64.
428s Preparing to unpack .../93-python3-pandas-lib_2.1.4+dfsg-4ubuntu2_amd64.deb ...
428s Unpacking python3-pandas-lib:amd64 (2.1.4+dfsg-4ubuntu2) ...
429s Selecting previously unselected package python3-pandas.
429s Preparing to unpack .../94-python3-pandas_2.1.4+dfsg-4ubuntu2_all.deb ...
429s Unpacking python3-pandas (2.1.4+dfsg-4ubuntu2) ...
429s Selecting previously unselected package python3-cgelib.
429s Preparing to unpack .../95-python3-cgelib_0.7.3-3_all.deb ...
429s Unpacking python3-cgelib (0.7.3-3) ...
429s Selecting previously unselected package python3-tabulate.
429s Preparing to unpack .../96-python3-tabulate_0.8.10-1_all.deb ...
429s Unpacking python3-tabulate (0.8.10-1) ...
429s Selecting previously unselected package resfinder-db.
429s Preparing to unpack .../97-resfinder-db_0.0+git20220524.fa32d9a-1_all.deb ...
429s Unpacking resfinder-db (0.0+git20220524.fa32d9a-1) ...
430s Selecting previously unselected package resfinder.
430s Preparing to unpack .../98-resfinder_4.4.2-1_all.deb ...
430s Unpacking resfinder (4.4.2-1) ...
430s Selecting previously unselected package resfinder-example.
430s Preparing to unpack .../99-resfinder-example_4.4.2-1_all.deb ...
430s Unpacking resfinder-example (4.4.2-1) ...
430s Setting up libgraphite2-3:amd64 (1.3.14-2) ...
430s Setting up liblcms2-2:amd64 (2.14-2) ...
430s Setting up ncbi-data (6.1.20170106+dfsg1-10) ...
430s Setting up libpixman-1-0:amd64 (0.42.2-1) ...
430s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ...
430s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ...
430s Setting up resfinder-db (0.0+git20220524.fa32d9a-1) ...
430s Setting up libxrender1:amd64 (1:0.9.10-1.1) ...
430s Setting up libxcb-render0:amd64 (1.15-1) ...
430s Setting up x11-common (1:7.7+23ubuntu2) ...
430s Setting up libdeflate0:amd64 (1.19-1) ...
430s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ...
430s Setting up python3-tabulate (0.8.10-1) ...
430s Setting up libxcb-shm0:amd64 (1.15-1) ...
430s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
430s Setting up python3-freetype (2.4.0-1) ...
430s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ...
430s Setting up liberror-perl (0.17029-2) ...
430s Setting up libfontenc1:amd64 (1:1.1.8-1) ...
430s Setting up libblas3:amd64 (3.12.0-3) ...
430s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
430s Setting up libtirpc-dev:amd64 (1.3.4+ds-1build1) ...
430s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
430s Setting up libmbedcrypto7:amd64 (2.28.7-1ubuntu1) ...
430s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
430s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ...
430s Setting up libimagequant0:amd64 (2.18.0-1) ...
430s Setting up fonts-dejavu-mono (2.37-8) ...
430s Setting up libmpc3:amd64 (1.3.1-1) ...
430s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ...
430s Setting up fonts-dejavu-core (2.37-8) ...
431s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ...
431s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ...
431s Setting up libwebp7:amd64 (1.3.2-0.4) ...
431s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ...
431s Setting up fonts-dejavu-extra (2.37-8) ...
431s Setting up libnsl-dev:amd64 (1.3.0-3) ...
431s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ...
431s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ...
431s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ...
431s Setting up kma (1.4.14-2) ...
431s Setting up libopenjp2-7:amd64 (2.5.0-2) ...
431s Setting up git-man (1:2.43.0-1ubuntu1) ...
431s Setting up libharfbuzz0b:amd64 (8.3.0-2) ...
431s Setting up python3-dateutil (2.8.2-3) ...
431s Setting up sgml-base (1.31) ...
431s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ...
431s Setting up resfinder-example (4.4.2-1) ...
431s Setting up libisl23:amd64 (0.26-3) ...
431s Setting up libc-dev-bin (2.39-0ubuntu2) ...
431s Setting up libwebpmux3:amd64 (1.3.2-0.4) ...
431s Setting up python3-smmap (6.0.0-1) ...
431s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ...
431s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ...
431s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ...
431s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
431s Setting up liblapack3:amd64 (3.12.0-3) ...
431s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
431s Setting up libmbedx509-1:amd64 (2.28.7-1ubuntu1) ...
431s Setting up libmbedtls14:amd64 (2.28.7-1ubuntu1) ...
431s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
431s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
431s Setting up libwebpdemux2:amd64 (1.3.2-0.4) ...
431s Setting up python3-gitdb (4.0.11-1) ...
431s Setting up xfonts-utils (1:7.7+6build2) ...
431s Setting up ncbi-blast+ (2.12.0+ds-4) ...
431s Setting up libraqm0:amd64 (0.10.1-1) ...
431s Setting up git (1:2.43.0-1ubuntu1) ...
431s Setting up python3-numpy (1:1.24.2-2) ...
433s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ...
433s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ...
433s Setting up xml-core (0.19) ...
433s Setting up libc6-dev:amd64 (2.39-0ubuntu2) ...
433s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ...
433s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ...
433s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
433s Setting up ncbi-blast+-legacy (2.12.0+ds-4) ...
433s Setting up cpp-13 (13.2.0-17ubuntu2) ...
433s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
433s Setting up python3-pandas-lib:amd64 (2.1.4+dfsg-4ubuntu2) ...
433s Setting up fonts-urw-base35 (20200910-8) ...
433s Setting up libcairo2:amd64 (1.18.0-1) ...
433s Setting up python3-pil:amd64 (10.2.0-1) ...
434s Setting up python3-pandas (2.1.4+dfsg-4ubuntu2) ...
438s Setting up python3-git (3.1.37-3) ...
438s Setting up gcc-13 (13.2.0-17ubuntu2) ...
438s Setting up cpp (4:13.2.0-7ubuntu1) ...
438s Setting up python3-cairo (1.25.1-2) ...
438s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ...
438s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
438s Setting up python3-cgelib (0.7.3-3) ...
438s Setting up gcc (4:13.2.0-7ubuntu1) ...
438s Setting up python3-rlpycairo (0.3.0-3) ...
438s Setting up python3-reportlab (4.1.0-1) ...
439s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ...
439s Setting up g++-13 (13.2.0-17ubuntu2) ...
439s Setting up g++ (4:13.2.0-7ubuntu1) ...
439s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
439s Setting up build-essential (12.10ubuntu1) ...
439s Processing triggers for libc-bin (2.39-0ubuntu2) ...
439s Processing triggers for man-db (2.12.0-3) ...
440s Processing triggers for sgml-base (1.31) ...
441s Setting up w3c-sgml-lib (1.3-3) ...
467s Setting up python3-biopython (1.81+dfsg-3) ...
468s Setting up python3-cgecore (1.5.6+ds-1) ...
468s /usr/lib/python3/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w'
468s   start = re.search("^-*(\w+)", align_query).start(1)
468s /usr/lib/python3/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w'
468s   end = re.search("\w+(-*)$", align_query).start(1)
468s /usr/lib/python3/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{'
468s   """
468s /usr/lib/python3/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w'
468s   src = re.sub('[^\w/\-\.\*]', '', src)
468s /usr/lib/python3/dist-packages/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w'
468s   dst = re.sub('[^\w/\-\.\*]', '', dst)
468s /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
468s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
468s /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
468s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
468s /usr/lib/python3/dist-packages/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w'
468s   invalid_chars = re.findall('[^\w/\-\.\*]', os.path.basename(file_))
468s /usr/lib/python3/dist-packages/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w'
468s   src = re.sub('[^\w/\-\.\*]', '', src)
468s /usr/lib/python3/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w'
468s   dst = re.sub('[^\w/\-\.\*]', '', dst)
468s /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
468s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
468s /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
468s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
468s Setting up resfinder (4.4.2-1) ...
487s Reading package lists...
487s Building dependency tree...
487s Reading state information...
488s Starting pkgProblemResolver with broken count: 0
488s Starting 2 pkgProblemResolver with broken count: 0
488s Done
488s The following NEW packages will be installed:
488s   autopkgtest-satdep
488s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
488s Need to get 0 B/700 B of archives.
488s After this operation, 0 B of additional disk space will be used.
488s Get:1 /tmp/autopkgtest.XDveR2/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B]
489s Selecting previously unselected package autopkgtest-satdep.
489s (Reading database ... 
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489s Preparing to unpack .../2-autopkgtest-satdep.deb ...
489s Unpacking autopkgtest-satdep (0) ...
489s Setting up autopkgtest-satdep (0) ...
490s (Reading database ... 81370 files and directories currently installed.)
491s Removing autopkgtest-satdep (0) ...
491s autopkgtest [01:58:19]: test version-test: [-----------------------
491s PASS
492s autopkgtest [01:58:20]: test version-test: -----------------------]
492s autopkgtest [01:58:20]: test version-test:  - - - - - - - - - - results - - - - - - - - - -
492s version-test         PASS (superficial)
492s autopkgtest [01:58:20]: @@@@@@@@@@@@@@@@@@@@ summary
492s run-unit-test        SKIP Test lists explicitly supported architectures, but the current architecture i386 isn't listed.
492s version-test         PASS (superficial)
503s Creating nova instance adt-noble-i386-resfinder-20240322-015008-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240321.img (UUID 6f9effbc-61d8-4d0a-a7e9-883547f42ac1)...