0s autopkgtest [03:21:45]: starting date and time: 2024-03-24 03:21:45+0000 0s autopkgtest [03:21:45]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [03:21:45]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.29w_5lus/out --timeout-copy=6000 -a i386 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base --apt-upgrade r-other-wasabi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-15.secgroup --name adt-noble-i386-r-other-wasabi-20240324-032145-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 118s autopkgtest [03:23:43]: testbed dpkg architecture: amd64 118s autopkgtest [03:23:43]: testbed apt version: 2.7.12 118s autopkgtest [03:23:43]: test architecture: i386 118s autopkgtest [03:23:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 118s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 118s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3986 kB] 118s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 118s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 118s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 118s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [483 kB] 118s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [725 kB] 118s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 118s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 118s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 118s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 118s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4424 kB] 118s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1304 kB] 118s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 118s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.1 kB] 118s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.1 kB] 118s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 122s Fetched 11.8 MB in 2s (7589 kB/s) 122s Reading package lists... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s Calculating upgrade... 125s The following packages will be upgraded: 125s libc-bin libc6 locales 125s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Need to get 8176 kB of archives. 125s After this operation, 2048 B of additional disk space will be used. 125s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] 125s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] 125s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB] 125s Preconfiguring packages ... 125s Fetched 8176 kB in 0s (70.0 MB/s) 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 126s Preparing to unpack .../libc6_2.39-0ubuntu6_amd64.deb ... 126s Unpacking libc6:amd64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 126s Setting up libc6:amd64 (2.39-0ubuntu6) ... 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 126s Preparing to unpack .../libc-bin_2.39-0ubuntu6_amd64.deb ... 126s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 126s Setting up libc-bin (2.39-0ubuntu6) ... 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 127s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 127s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 127s Setting up locales (2.39-0ubuntu6) ... 128s Generating locales (this might take a while)... 129s en_US.UTF-8... done 129s Generation complete. 129s Processing triggers for man-db (2.12.0-3) ... 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 131s sh: Attempting to set up Debian/Ubuntu apt sources automatically 131s sh: Distribution appears to be Ubuntu 132s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s eatmydata is already the newest version (131-1). 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s dbus is already the newest version (1.14.10-4ubuntu1). 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s rng-tools-debian is already the newest version (2.4). 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Reading package lists... 135s Building dependency tree... 135s Reading state information... 135s The following packages will be REMOVED: 135s cloud-init* python3-configobj* python3-debconf* 135s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 135s After this operation, 3256 kB disk space will be freed. 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 135s Removing cloud-init (24.1.2-0ubuntu1) ... 136s Removing python3-configobj (5.0.8-3) ... 136s Removing python3-debconf (1.5.86) ... 136s Processing triggers for man-db (2.12.0-3) ... 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 136s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 137s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 137s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 137s invoke-rc.d: policy-rc.d denied execution of try-restart. 137s Reading package lists... 137s Building dependency tree... 137s Reading state information... 138s linux-generic is already the newest version (6.8.0-11.11+1). 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 138s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 138s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 140s Reading package lists... 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s Calculating upgrade... 141s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s autopkgtest [03:24:07]: rebooting testbed after setup commands that affected boot 318s autopkgtest [03:27:03]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 319s autopkgtest [03:27:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-other-wasabi 320s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-other-wasabi 1.0.1-3 (dsc) [2089 B] 320s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-other-wasabi 1.0.1-3 (tar) [6709 B] 320s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-other-wasabi 1.0.1-3 (diff) [2396 B] 320s gpgv: Signature made Tue Dec 6 16:46:08 2022 UTC 320s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 320s gpgv: issuer "tille@debian.org" 320s gpgv: Can't check signature: No public key 320s dpkg-source: warning: cannot verify inline signature for ./r-other-wasabi_1.0.1-3.dsc: no acceptable signature found 320s autopkgtest [03:27:05]: testing package r-other-wasabi version 1.0.1-3 320s autopkgtest [03:27:05]: build not needed 324s autopkgtest [03:27:09]: test pkg-r-autopkgtest: preparing testbed 327s Note, using file '/tmp/autopkgtest.yzQxZ3/1-autopkgtest-satdep.dsc' to get the build dependencies 327s Reading package lists... 327s Building dependency tree... 327s Reading state information... 327s Starting pkgProblemResolver with broken count: 0 327s Starting 2 pkgProblemResolver with broken count: 0 327s Done 328s The following NEW packages will be installed: 328s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 328s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 328s g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 328s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 328s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu hdf5-helpers 328s icu-devtools libaec-dev libaec0 libasan8 libatomic1 libblas-dev libblas3 328s libblosc1 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 328s libcurl4-openssl-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 328s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 328s libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 328s libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 328s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 328s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 328s liblsan0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 328s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 328s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 328s libpng-dev libquadmath0 libreadline-dev libsharpyuv0 libsm6 libsnappy1v5 328s libssl-dev libstdc++-13-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 328s libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 328s libxrender1 libxss1 libxt6 linux-libc-dev pkg-config pkg-r-autopkgtest 328s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics r-bioc-rhdf5 328s r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4vectors r-cran-data.table 328s r-cran-littler r-cran-rjson r-other-wasabi rpcsvc-proto unzip x11-common 328s xdg-utils zip zlib1g-dev 328s 0 upgraded, 128 newly installed, 0 to remove and 0 not upgraded. 328s Need to get 151 MB of archives. 328s After this operation, 496 MB of additional disk space will be used. 328s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 328s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 328s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 328s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 328s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 328s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 328s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 328s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 328s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 328s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 328s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 328s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 328s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 328s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 328s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 328s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 328s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 328s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 328s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 328s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 328s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 328s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 328s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 328s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 328s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 328s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 328s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 328s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 328s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 328s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 328s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 328s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 328s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 328s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 328s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 328s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 328s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 328s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 328s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 328s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 328s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 328s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 328s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 328s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 328s Get:45 http://ftpmaster.internal/ubuntu noble/universe amd64 hdf5-helpers amd64 1.10.10+repack-3ubuntu1 [15.5 kB] 328s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 328s Get:47 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 328s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 328s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 328s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 328s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 328s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 328s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 328s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 328s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 328s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 328s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 328s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4-openssl-dev amd64 8.5.0-2ubuntu2 [446 kB] 328s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 328s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 328s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 328s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 328s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 328s Get:64 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 328s Get:65 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-cpp-103-1 amd64 1.10.10+repack-3ubuntu1 [128 kB] 328s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-fortran-102 amd64 1.10.10+repack-3ubuntu1 [86.4 kB] 328s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 328s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-fortran-100 amd64 1.10.10+repack-3ubuntu1 [32.5 kB] 328s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-cpp-100 amd64 1.10.10+repack-3ubuntu1 [11.0 kB] 328s Get:70 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 328s Get:71 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 328s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 328s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 328s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 328s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 328s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec-dev amd64 1.1.2-1 [19.5 kB] 328s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libssl-dev amd64 3.0.10-1ubuntu4 [2400 kB] 328s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-dev amd64 1.10.10+repack-3ubuntu1 [2826 kB] 328s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 328s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 328s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 329s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 329s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 329s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 329s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 329s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 329s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 329s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 329s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 329s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 329s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 329s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 329s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 329s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 329s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 329s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 329s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 329s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 329s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 329s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 329s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 329s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 329s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 329s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 329s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 329s Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 329s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 329s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 329s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 329s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 329s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 329s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 329s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 329s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 329s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 329s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 329s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 329s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 329s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 329s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 329s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5lib amd64 1.24.2+dfsg-1 [96.2 kB] 329s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5filters amd64 1.14.1+dfsg-3 [136 kB] 329s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 329s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhdf5 amd64 2.46.1+dfsg-1 [808 kB] 329s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-data.table amd64 1.14.10+dfsg-1 [1837 kB] 329s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 329s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 329s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-other-wasabi all 1.0.1-3 [27.9 kB] 329s Preconfiguring packages ... 330s Fetched 151 MB in 1s (128 MB/s) 330s Selecting previously unselected package libc-dev-bin. 330s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 330s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 330s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 330s Selecting previously unselected package linux-libc-dev:amd64. 330s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_amd64.deb ... 330s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 330s Selecting previously unselected package libcrypt-dev:amd64. 330s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_amd64.deb ... 330s Unpacking libcrypt-dev:amd64 (1:4.4.36-4) ... 330s Selecting previously unselected package rpcsvc-proto. 330s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_amd64.deb ... 330s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 330s Selecting previously unselected package libc6-dev:amd64. 330s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_amd64.deb ... 330s Unpacking libc6-dev:amd64 (2.39-0ubuntu6) ... 330s Selecting previously unselected package libisl23:amd64. 330s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 330s Unpacking libisl23:amd64 (0.26-3) ... 330s Selecting previously unselected package libmpc3:amd64. 330s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 330s Unpacking libmpc3:amd64 (1.3.1-1) ... 330s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 330s Preparing to unpack .../007-cpp-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 330s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 331s Selecting previously unselected package cpp-13. 331s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 331s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 331s Selecting previously unselected package cpp-x86-64-linux-gnu. 331s Preparing to unpack .../009-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 331s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 331s Selecting previously unselected package cpp. 331s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 331s Unpacking cpp (4:13.2.0-7ubuntu1) ... 331s Selecting previously unselected package libcc1-0:amd64. 331s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 331s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package libgomp1:amd64. 331s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 331s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package libitm1:amd64. 331s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_amd64.deb ... 331s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package libatomic1:amd64. 331s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 331s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package libasan8:amd64. 331s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_amd64.deb ... 331s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package liblsan0:amd64. 331s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 331s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package libtsan2:amd64. 331s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 331s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package libubsan1:amd64. 331s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 331s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package libhwasan0:amd64. 331s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_amd64.deb ... 331s Unpacking libhwasan0:amd64 (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package libquadmath0:amd64. 331s Preparing to unpack .../020-libquadmath0_14-20240303-1ubuntu1_amd64.deb ... 331s Unpacking libquadmath0:amd64 (14-20240303-1ubuntu1) ... 331s Selecting previously unselected package libgcc-13-dev:amd64. 331s Preparing to unpack .../021-libgcc-13-dev_13.2.0-17ubuntu2_amd64.deb ... 331s Unpacking libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 331s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 331s Preparing to unpack .../022-gcc-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 331s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 332s Selecting previously unselected package gcc-13. 332s Preparing to unpack .../023-gcc-13_13.2.0-17ubuntu2_amd64.deb ... 332s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 332s Selecting previously unselected package gcc-x86-64-linux-gnu. 332s Preparing to unpack .../024-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 332s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 332s Selecting previously unselected package gcc. 332s Preparing to unpack .../025-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 332s Unpacking gcc (4:13.2.0-7ubuntu1) ... 332s Selecting previously unselected package libstdc++-13-dev:amd64. 332s Preparing to unpack .../026-libstdc++-13-dev_13.2.0-17ubuntu2_amd64.deb ... 332s Unpacking libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 332s Selecting previously unselected package g++-13-x86-64-linux-gnu. 332s Preparing to unpack .../027-g++-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 332s Unpacking g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 332s Selecting previously unselected package g++-13. 332s Preparing to unpack .../028-g++-13_13.2.0-17ubuntu2_amd64.deb ... 332s Unpacking g++-13 (13.2.0-17ubuntu2) ... 332s Selecting previously unselected package g++-x86-64-linux-gnu. 332s Preparing to unpack .../029-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 332s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 332s Selecting previously unselected package g++. 332s Preparing to unpack .../030-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 332s Unpacking g++ (4:13.2.0-7ubuntu1) ... 332s Selecting previously unselected package build-essential. 332s Preparing to unpack .../031-build-essential_12.10ubuntu1_amd64.deb ... 332s Unpacking build-essential (12.10ubuntu1) ... 332s Selecting previously unselected package dctrl-tools. 332s Preparing to unpack .../032-dctrl-tools_2.24-3build2_amd64.deb ... 332s Unpacking dctrl-tools (2.24-3build2) ... 332s Selecting previously unselected package fonts-dejavu-mono. 332s Preparing to unpack .../033-fonts-dejavu-mono_2.37-8_all.deb ... 332s Unpacking fonts-dejavu-mono (2.37-8) ... 332s Selecting previously unselected package fonts-dejavu-core. 332s Preparing to unpack .../034-fonts-dejavu-core_2.37-8_all.deb ... 332s Unpacking fonts-dejavu-core (2.37-8) ... 332s Selecting previously unselected package fontconfig-config. 332s Preparing to unpack .../035-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 333s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 333s Selecting previously unselected package libfontconfig1:amd64. 333s Preparing to unpack .../036-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 333s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 333s Selecting previously unselected package fontconfig. 333s Preparing to unpack .../037-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 333s Unpacking fontconfig (2.15.0-1ubuntu1) ... 333s Selecting previously unselected package libgfortran5:amd64. 333s Preparing to unpack .../038-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 333s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 333s Selecting previously unselected package libgfortran-13-dev:amd64. 333s Preparing to unpack .../039-libgfortran-13-dev_13.2.0-17ubuntu2_amd64.deb ... 333s Unpacking libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 333s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 333s Preparing to unpack .../040-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 333s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 333s Selecting previously unselected package gfortran-13. 333s Preparing to unpack .../041-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 333s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 333s Selecting previously unselected package gfortran-x86-64-linux-gnu. 333s Preparing to unpack .../042-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 333s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 333s Selecting previously unselected package gfortran. 333s Preparing to unpack .../043-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 333s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 333s Selecting previously unselected package hdf5-helpers. 333s Preparing to unpack .../044-hdf5-helpers_1.10.10+repack-3ubuntu1_amd64.deb ... 333s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 333s Selecting previously unselected package icu-devtools. 333s Preparing to unpack .../045-icu-devtools_74.2-1ubuntu1_amd64.deb ... 333s Unpacking icu-devtools (74.2-1ubuntu1) ... 333s Selecting previously unselected package libaec0:amd64. 333s Preparing to unpack .../046-libaec0_1.1.2-1_amd64.deb ... 333s Unpacking libaec0:amd64 (1.1.2-1) ... 333s Selecting previously unselected package libblas3:amd64. 333s Preparing to unpack .../047-libblas3_3.12.0-3_amd64.deb ... 333s Unpacking libblas3:amd64 (3.12.0-3) ... 333s Selecting previously unselected package libblas-dev:amd64. 333s Preparing to unpack .../048-libblas-dev_3.12.0-3_amd64.deb ... 333s Unpacking libblas-dev:amd64 (3.12.0-3) ... 333s Selecting previously unselected package libsnappy1v5:amd64. 333s Preparing to unpack .../049-libsnappy1v5_1.1.10-1_amd64.deb ... 333s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 333s Selecting previously unselected package libblosc1:amd64. 333s Preparing to unpack .../050-libblosc1_1.21.5+ds-1_amd64.deb ... 333s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 333s Selecting previously unselected package libbz2-dev:amd64. 333s Preparing to unpack .../051-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 333s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 333s Selecting previously unselected package libpixman-1-0:amd64. 333s Preparing to unpack .../052-libpixman-1-0_0.42.2-1_amd64.deb ... 333s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 333s Selecting previously unselected package libxcb-render0:amd64. 333s Preparing to unpack .../053-libxcb-render0_1.15-1_amd64.deb ... 333s Unpacking libxcb-render0:amd64 (1.15-1) ... 333s Selecting previously unselected package libxcb-shm0:amd64. 333s Preparing to unpack .../054-libxcb-shm0_1.15-1_amd64.deb ... 333s Unpacking libxcb-shm0:amd64 (1.15-1) ... 333s Selecting previously unselected package libxrender1:amd64. 333s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 333s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 333s Selecting previously unselected package libcairo2:amd64. 333s Preparing to unpack .../056-libcairo2_1.18.0-1_amd64.deb ... 333s Unpacking libcairo2:amd64 (1.18.0-1) ... 333s Selecting previously unselected package libcurl4-openssl-dev:amd64. 333s Preparing to unpack .../057-libcurl4-openssl-dev_8.5.0-2ubuntu2_amd64.deb ... 333s Unpacking libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 334s Selecting previously unselected package libdatrie1:amd64. 334s Preparing to unpack .../058-libdatrie1_0.2.13-3_amd64.deb ... 334s Unpacking libdatrie1:amd64 (0.2.13-3) ... 334s Selecting previously unselected package libdeflate0:amd64. 334s Preparing to unpack .../059-libdeflate0_1.19-1_amd64.deb ... 334s Unpacking libdeflate0:amd64 (1.19-1) ... 334s Selecting previously unselected package libgraphite2-3:amd64. 334s Preparing to unpack .../060-libgraphite2-3_1.3.14-2_amd64.deb ... 334s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 334s Selecting previously unselected package libharfbuzz0b:amd64. 334s Preparing to unpack .../061-libharfbuzz0b_8.3.0-2_amd64.deb ... 334s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 334s Selecting previously unselected package libsz2:amd64. 334s Preparing to unpack .../062-libsz2_1.1.2-1_amd64.deb ... 334s Unpacking libsz2:amd64 (1.1.2-1) ... 334s Selecting previously unselected package libhdf5-103-1:amd64. 334s Preparing to unpack .../063-libhdf5-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 334s Unpacking libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 334s Selecting previously unselected package libhdf5-cpp-103-1:amd64. 334s Preparing to unpack .../064-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_amd64.deb ... 334s Unpacking libhdf5-cpp-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 334s Selecting previously unselected package libhdf5-fortran-102:amd64. 334s Preparing to unpack .../065-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_amd64.deb ... 334s Unpacking libhdf5-fortran-102:amd64 (1.10.10+repack-3ubuntu1) ... 334s Selecting previously unselected package libhdf5-hl-100:amd64. 334s Preparing to unpack .../066-libhdf5-hl-100_1.10.10+repack-3ubuntu1_amd64.deb ... 334s Unpacking libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 334s Selecting previously unselected package libhdf5-hl-fortran-100:amd64. 334s Preparing to unpack .../067-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_amd64.deb ... 334s Unpacking libhdf5-hl-fortran-100:amd64 (1.10.10+repack-3ubuntu1) ... 334s Selecting previously unselected package libhdf5-hl-cpp-100:amd64. 334s Preparing to unpack .../068-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_amd64.deb ... 334s Unpacking libhdf5-hl-cpp-100:amd64 (1.10.10+repack-3ubuntu1) ... 334s Selecting previously unselected package zlib1g-dev:amd64. 334s Preparing to unpack .../069-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 334s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 334s Selecting previously unselected package libjpeg-turbo8:amd64. 334s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 334s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 334s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 334s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 334s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 334s Selecting previously unselected package libjpeg8:amd64. 334s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_amd64.deb ... 334s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 334s Selecting previously unselected package libjpeg8-dev:amd64. 334s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 334s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 334s Selecting previously unselected package libjpeg-dev:amd64. 334s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 334s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 334s Selecting previously unselected package libaec-dev:amd64. 334s Preparing to unpack .../075-libaec-dev_1.1.2-1_amd64.deb ... 334s Unpacking libaec-dev:amd64 (1.1.2-1) ... 334s Selecting previously unselected package libssl-dev:amd64. 334s Preparing to unpack .../076-libssl-dev_3.0.10-1ubuntu4_amd64.deb ... 334s Unpacking libssl-dev:amd64 (3.0.10-1ubuntu4) ... 334s Selecting previously unselected package libhdf5-dev. 334s Preparing to unpack .../077-libhdf5-dev_1.10.10+repack-3ubuntu1_amd64.deb ... 334s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 334s Selecting previously unselected package x11-common. 334s Preparing to unpack .../078-x11-common_1%3a7.7+23ubuntu2_all.deb ... 334s Unpacking x11-common (1:7.7+23ubuntu2) ... 334s Selecting previously unselected package libice6:amd64. 334s Preparing to unpack .../079-libice6_2%3a1.0.10-1build2_amd64.deb ... 334s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 334s Selecting previously unselected package libicu-dev:amd64. 334s Preparing to unpack .../080-libicu-dev_74.2-1ubuntu1_amd64.deb ... 334s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 335s Selecting previously unselected package liblapack3:amd64. 335s Preparing to unpack .../081-liblapack3_3.12.0-3_amd64.deb ... 335s Unpacking liblapack3:amd64 (3.12.0-3) ... 335s Selecting previously unselected package liblapack-dev:amd64. 335s Preparing to unpack .../082-liblapack-dev_3.12.0-3_amd64.deb ... 335s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 335s Selecting previously unselected package liblerc4:amd64. 335s Preparing to unpack .../083-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 335s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 335s Selecting previously unselected package libncurses-dev:amd64. 335s Preparing to unpack .../084-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 335s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 335s Selecting previously unselected package libthai-data. 335s Preparing to unpack .../085-libthai-data_0.1.29-2_all.deb ... 335s Unpacking libthai-data (0.1.29-2) ... 335s Selecting previously unselected package libthai0:amd64. 335s Preparing to unpack .../086-libthai0_0.1.29-2_amd64.deb ... 335s Unpacking libthai0:amd64 (0.1.29-2) ... 335s Selecting previously unselected package libpango-1.0-0:amd64. 335s Preparing to unpack .../087-libpango-1.0-0_1.51.0+ds-4_amd64.deb ... 335s Unpacking libpango-1.0-0:amd64 (1.51.0+ds-4) ... 335s Selecting previously unselected package libpangoft2-1.0-0:amd64. 335s Preparing to unpack .../088-libpangoft2-1.0-0_1.51.0+ds-4_amd64.deb ... 335s Unpacking libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 335s Selecting previously unselected package libpangocairo-1.0-0:amd64. 335s Preparing to unpack .../089-libpangocairo-1.0-0_1.51.0+ds-4_amd64.deb ... 335s Unpacking libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 335s Selecting previously unselected package libpaper1:amd64. 335s Preparing to unpack .../090-libpaper1_1.1.29_amd64.deb ... 335s Unpacking libpaper1:amd64 (1.1.29) ... 335s Selecting previously unselected package libpaper-utils. 335s Preparing to unpack .../091-libpaper-utils_1.1.29_amd64.deb ... 335s Unpacking libpaper-utils (1.1.29) ... 335s Selecting previously unselected package libpcre2-16-0:amd64. 335s Preparing to unpack .../092-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 335s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 335s Selecting previously unselected package libpcre2-32-0:amd64. 335s Preparing to unpack .../093-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 335s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 335s Selecting previously unselected package libpcre2-posix3:amd64. 335s Preparing to unpack .../094-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 335s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 335s Selecting previously unselected package libpcre2-dev:amd64. 335s Preparing to unpack .../095-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 335s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 335s Selecting previously unselected package libpkgconf3:amd64. 335s Preparing to unpack .../096-libpkgconf3_1.8.1-2_amd64.deb ... 335s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 335s Selecting previously unselected package libpng-dev:amd64. 335s Preparing to unpack .../097-libpng-dev_1.6.43-1_amd64.deb ... 335s Unpacking libpng-dev:amd64 (1.6.43-1) ... 336s Selecting previously unselected package libreadline-dev:amd64. 336s Preparing to unpack .../098-libreadline-dev_8.2-3_amd64.deb ... 336s Unpacking libreadline-dev:amd64 (8.2-3) ... 336s Selecting previously unselected package libsharpyuv0:amd64. 336s Preparing to unpack .../099-libsharpyuv0_1.3.2-0.4_amd64.deb ... 336s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 336s Selecting previously unselected package libsm6:amd64. 336s Preparing to unpack .../100-libsm6_2%3a1.2.3-1build2_amd64.deb ... 336s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 336s Selecting previously unselected package libtcl8.6:amd64. 336s Preparing to unpack .../101-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 336s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 336s Selecting previously unselected package libjbig0:amd64. 336s Preparing to unpack .../102-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 336s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 336s Selecting previously unselected package libwebp7:amd64. 336s Preparing to unpack .../103-libwebp7_1.3.2-0.4_amd64.deb ... 336s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 336s Selecting previously unselected package libtiff6:amd64. 336s Preparing to unpack .../104-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 336s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 336s Selecting previously unselected package libxft2:amd64. 336s Preparing to unpack .../105-libxft2_2.3.6-1_amd64.deb ... 336s Unpacking libxft2:amd64 (2.3.6-1) ... 336s Selecting previously unselected package libxss1:amd64. 336s Preparing to unpack .../106-libxss1_1%3a1.2.3-1build2_amd64.deb ... 336s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 336s Selecting previously unselected package libtk8.6:amd64. 336s Preparing to unpack .../107-libtk8.6_8.6.14-1_amd64.deb ... 336s Unpacking libtk8.6:amd64 (8.6.14-1) ... 336s Selecting previously unselected package libxt6:amd64. 336s Preparing to unpack .../108-libxt6_1%3a1.2.1-1.1_amd64.deb ... 336s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 336s Selecting previously unselected package pkgconf-bin. 336s Preparing to unpack .../109-pkgconf-bin_1.8.1-2_amd64.deb ... 336s Unpacking pkgconf-bin (1.8.1-2) ... 336s Selecting previously unselected package pkgconf:amd64. 336s Preparing to unpack .../110-pkgconf_1.8.1-2_amd64.deb ... 336s Unpacking pkgconf:amd64 (1.8.1-2) ... 336s Selecting previously unselected package pkg-config:amd64. 336s Preparing to unpack .../111-pkg-config_1.8.1-2_amd64.deb ... 336s Unpacking pkg-config:amd64 (1.8.1-2) ... 336s Selecting previously unselected package zip. 336s Preparing to unpack .../112-zip_3.0-13_amd64.deb ... 336s Unpacking zip (3.0-13) ... 336s Selecting previously unselected package unzip. 336s Preparing to unpack .../113-unzip_6.0-28ubuntu3_amd64.deb ... 336s Unpacking unzip (6.0-28ubuntu3) ... 336s Selecting previously unselected package xdg-utils. 336s Preparing to unpack .../114-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 336s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 336s Selecting previously unselected package r-base-core. 336s Preparing to unpack .../115-r-base-core_4.3.2-1build1_amd64.deb ... 336s Unpacking r-base-core (4.3.2-1build1) ... 336s Selecting previously unselected package liblzma-dev:amd64. 336s Preparing to unpack .../116-liblzma-dev_5.4.5-0.3_amd64.deb ... 336s Unpacking liblzma-dev:amd64 (5.4.5-0.3) ... 336s Selecting previously unselected package r-base-dev. 336s Preparing to unpack .../117-r-base-dev_4.3.2-1build1_all.deb ... 336s Unpacking r-base-dev (4.3.2-1build1) ... 336s Selecting previously unselected package pkg-r-autopkgtest. 336s Preparing to unpack .../118-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 336s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 336s Selecting previously unselected package r-bioc-biocgenerics. 336s Preparing to unpack .../119-r-bioc-biocgenerics_0.48.1-2_all.deb ... 336s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 336s Selecting previously unselected package r-bioc-rhdf5lib. 337s Preparing to unpack .../120-r-bioc-rhdf5lib_1.24.2+dfsg-1_amd64.deb ... 337s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 337s Selecting previously unselected package r-bioc-rhdf5filters. 337s Preparing to unpack .../121-r-bioc-rhdf5filters_1.14.1+dfsg-3_amd64.deb ... 337s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 337s Selecting previously unselected package r-bioc-s4vectors. 337s Preparing to unpack .../122-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 337s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 337s Selecting previously unselected package r-bioc-rhdf5. 337s Preparing to unpack .../123-r-bioc-rhdf5_2.46.1+dfsg-1_amd64.deb ... 337s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 337s Selecting previously unselected package r-cran-data.table. 337s Preparing to unpack .../124-r-cran-data.table_1.14.10+dfsg-1_amd64.deb ... 337s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 337s Selecting previously unselected package r-cran-littler. 337s Preparing to unpack .../125-r-cran-littler_0.3.19-1_amd64.deb ... 337s Unpacking r-cran-littler (0.3.19-1) ... 337s Selecting previously unselected package r-cran-rjson. 337s Preparing to unpack .../126-r-cran-rjson_0.2.21-1_amd64.deb ... 337s Unpacking r-cran-rjson (0.2.21-1) ... 337s Selecting previously unselected package r-other-wasabi. 337s Preparing to unpack .../127-r-other-wasabi_1.0.1-3_all.deb ... 337s Unpacking r-other-wasabi (1.0.1-3) ... 337s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 337s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 337s Setting up libsharpyuv0:amd64 (1.3.2-0.4) ... 337s Setting up libpaper1:amd64 (1.1.29) ... 337s 337s Creating config file /etc/papersize with new version 337s Setting up liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 337s Setting up hdf5-helpers (1.10.10+repack-3ubuntu1) ... 337s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 337s Setting up libdatrie1:amd64 (0.2.13-3) ... 337s Setting up libxcb-render0:amd64 (1.15-1) ... 337s Setting up unzip (6.0-28ubuntu3) ... 337s Setting up x11-common (1:7.7+23ubuntu2) ... 337s Setting up libdeflate0:amd64 (1.19-1) ... 337s Setting up linux-libc-dev:amd64 (6.8.0-11.11) ... 337s Setting up libxcb-shm0:amd64 (1.15-1) ... 337s Setting up libpaper-utils (1.1.29) ... 337s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 337s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 337s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 337s Setting up libaec0:amd64 (1.1.2-1) ... 337s Setting up libsnappy1v5:amd64 (1.1.10-1) ... 337s Setting up zip (3.0-13) ... 337s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 337s Setting up libblas3:amd64 (3.12.0-3) ... 337s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 337s Setting up libpkgconf3:amd64 (1.8.1-2) ... 337s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 337s Setting up libcurl4-openssl-dev:amd64 (8.5.0-2ubuntu2) ... 337s Setting up libquadmath0:amd64 (14-20240303-1ubuntu1) ... 337s Setting up fonts-dejavu-mono (2.37-8) ... 337s Setting up libssl-dev:amd64 (3.0.10-1ubuntu4) ... 337s Setting up libmpc3:amd64 (1.3.1-1) ... 337s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ... 337s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 337s Setting up icu-devtools (74.2-1ubuntu1) ... 337s Setting up fonts-dejavu-core (2.37-8) ... 338s Setting up pkgconf-bin (1.8.1-2) ... 338s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 338s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 338s Setting up libwebp7:amd64 (1.3.2-0.4) ... 338s Setting up liblzma-dev:amd64 (5.4.5-0.3) ... 338s Setting up libubsan1:amd64 (14-20240303-1ubuntu1) ... 338s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 338s Setting up libhwasan0:amd64 (14-20240303-1ubuntu1) ... 338s Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... 338s Setting up libasan8:amd64 (14-20240303-1ubuntu1) ... 338s Setting up libblosc1:amd64 (1.21.5+ds-1) ... 338s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 338s Setting up libthai-data (0.1.29-2) ... 338s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 338s Setting up libtsan2:amd64 (14-20240303-1ubuntu1) ... 338s Setting up libisl23:amd64 (0.26-3) ... 338s Setting up libc-dev-bin (2.39-0ubuntu6) ... 338s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 338s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 338s Setting up libcc1-0:amd64 (14-20240303-1ubuntu1) ... 338s Setting up liblsan0:amd64 (14-20240303-1ubuntu1) ... 338s Setting up libblas-dev:amd64 (3.12.0-3) ... 338s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 338s Setting up libsz2:amd64 (1.1.2-1) ... 338s Setting up dctrl-tools (2.24-3build2) ... 338s Setting up libitm1:amd64 (14-20240303-1ubuntu1) ... 338s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 338s Setting up libice6:amd64 (2:1.0.10-1build2) ... 338s Setting up liblapack3:amd64 (3.12.0-3) ... 338s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 338s Setting up cpp-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 338s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 338s Setting up libaec-dev:amd64 (1.1.2-1) ... 338s Setting up pkgconf:amd64 (1.8.1-2) ... 338s Setting up libthai0:amd64 (0.1.29-2) ... 338s Setting up liblapack-dev:amd64 (3.12.0-3) ... 338s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 338s Setting up pkg-config:amd64 (1.8.1-2) ... 338s Setting up libhdf5-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 338s Setting up libgcc-13-dev:amd64 (13.2.0-17ubuntu2) ... 338s Setting up libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 338s Setting up libhdf5-cpp-103-1:amd64 (1.10.10+repack-3ubuntu1) ... 338s Setting up libc6-dev:amd64 (2.39-0ubuntu6) ... 338s Setting up libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 338s Setting up libgfortran-13-dev:amd64 (13.2.0-17ubuntu2) ... 338s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 338s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 338s Setting up libstdc++-13-dev:amd64 (13.2.0-17ubuntu2) ... 338s Setting up libhdf5-hl-100:amd64 (1.10.10+repack-3ubuntu1) ... 338s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 338s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 338s Setting up fontconfig (2.15.0-1ubuntu1) ... 340s Regenerating fonts cache... done. 340s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 340s Setting up libxft2:amd64 (2.3.6-1) ... 340s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 340s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 340s Setting up cpp-13 (13.2.0-17ubuntu2) ... 340s Setting up gcc-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 340s Setting up libtk8.6:amd64 (8.6.14-1) ... 340s Setting up libpango-1.0-0:amd64 (1.51.0+ds-4) ... 340s Setting up libreadline-dev:amd64 (8.2-3) ... 340s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 340s Setting up libcairo2:amd64 (1.18.0-1) ... 340s Setting up libhdf5-hl-cpp-100:amd64 (1.10.10+repack-3ubuntu1) ... 340s Setting up gcc-13 (13.2.0-17ubuntu2) ... 340s Setting up libhdf5-fortran-102:amd64 (1.10.10+repack-3ubuntu1) ... 340s Setting up libxt6:amd64 (1:1.2.1-1.1) ... 340s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... 340s Setting up cpp (4:13.2.0-7ubuntu1) ... 340s Setting up libhdf5-hl-fortran-100:amd64 (1.10.10+repack-3ubuntu1) ... 340s Setting up libpangoft2-1.0-0:amd64 (1.51.0+ds-4) ... 340s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 340s Setting up libpangocairo-1.0-0:amd64 (1.51.0+ds-4) ... 340s Setting up g++-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 340s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 340s Setting up libpng-dev:amd64 (1.6.43-1) ... 340s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 340s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 340s Setting up gcc (4:13.2.0-7ubuntu1) ... 340s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 340s Setting up r-base-core (4.3.2-1build1) ... 340s 340s Creating config file /etc/R/Renviron with new version 340s Setting up libhdf5-dev (1.10.10+repack-3ubuntu1) ... 340s update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 340s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 340s Setting up r-cran-littler (0.3.19-1) ... 340s Setting up g++-13 (13.2.0-17ubuntu2) ... 340s Setting up r-bioc-biocgenerics (0.48.1-2) ... 340s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 340s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 340s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 340s Setting up gfortran (4:13.2.0-7ubuntu1) ... 340s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 340s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 340s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 340s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 340s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 340s Setting up g++ (4:13.2.0-7ubuntu1) ... 340s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 340s Setting up build-essential (12.10ubuntu1) ... 340s Setting up r-cran-rjson (0.2.21-1) ... 340s Setting up r-base-dev (4.3.2-1build1) ... 340s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 340s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 340s Setting up r-other-wasabi (1.0.1-3) ... 340s Processing triggers for man-db (2.12.0-3) ... 342s Processing triggers for install-info (7.1-3) ... 342s Processing triggers for libc-bin (2.39-0ubuntu6) ... 348s Reading package lists... 348s Building dependency tree... 348s Reading state information... 348s Starting pkgProblemResolver with broken count: 0 349s Starting 2 pkgProblemResolver with broken count: 0 349s Done 349s The following NEW packages will be installed: 349s autopkgtest-satdep 349s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 349s Need to get 0 B/696 B of archives. 349s After this operation, 0 B of additional disk space will be used. 349s Get:1 /tmp/autopkgtest.yzQxZ3/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [696 B] 349s Selecting previously unselected package autopkgtest-satdep. 349s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 78066 files and directories currently installed.) 349s Preparing to unpack .../2-autopkgtest-satdep.deb ... 349s Unpacking autopkgtest-satdep (0) ... 349s Setting up autopkgtest-satdep (0) ... 351s (Reading database ... 78066 files and directories currently installed.) 351s Removing autopkgtest-satdep (0) ... 351s autopkgtest [03:27:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 351s autopkgtest [03:27:36]: test pkg-r-autopkgtest: [----------------------- 352s Test: Try to load the R library wasabi 352s 352s R version 4.3.2 (2023-10-31) -- "Eye Holes" 352s Copyright (C) 2023 The R Foundation for Statistical Computing 352s Platform: x86_64-pc-linux-gnu (64-bit) 352s 352s R is free software and comes with ABSOLUTELY NO WARRANTY. 352s You are welcome to redistribute it under certain conditions. 352s Type 'license()' or 'licence()' for distribution details. 352s 352s R is a collaborative project with many contributors. 352s Type 'contributors()' for more information and 352s 'citation()' on how to cite R or R packages in publications. 352s 352s Type 'demo()' for some demos, 'help()' for on-line help, or 352s 'help.start()' for an HTML browser interface to help. 352s Type 'q()' to quit R. 352s 352s > library('wasabi') 352s > 352s > 352s Other tests are currently unsupported! 352s They will be progressively added. 352s autopkgtest [03:27:37]: test pkg-r-autopkgtest: -----------------------] 352s autopkgtest [03:27:37]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 352s pkg-r-autopkgtest PASS 353s autopkgtest [03:27:38]: @@@@@@@@@@@@@@@@@@@@ summary 353s pkg-r-autopkgtest PASS 362s Creating nova instance adt-noble-i386-r-other-wasabi-20240324-032145-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)...